AlfalfaGEDB | MS.gene83576

M. sativa cultivar XinJiangDaYe / MS.gene83576

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0046983
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83576.t1	XP_003597972.1	93.1	317	12	4	1	309	1	315	1.20E-149	539.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83576.t1	Q9T072	34.7	320	176	9	6	306	21	326	4.3e-31	136.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83576.t1	G7IMB3	93.1	317	12	4	1	309	1	315	8.6e-150	539.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene83576.t1	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050216	MS.gene83576	0.805414	1.35E-49	-1.69E-46
MS.gene052560	MS.gene83576	-0.808306	3.30E-50	-1.69E-46
MS.gene055776	MS.gene83576	0.802563	5.29E-49	-1.69E-46
MS.gene059514	MS.gene83576	-0.803153	3.99E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83576.t1	MTR_2g104550	93.060	317	12	4	1	309	1	315	0.0	570
MS.gene83576.t1	MTR_2g104490	79.288	309	56	6	1	304	1	306	1.11e-168	471
MS.gene83576.t1	MTR_2g104490	80.000	290	50	6	1	285	1	287	1.58e-158	444
MS.gene83576.t1	MTR_4g009540	45.429	350	126	15	1	305	1	330	3.36e-79	244
MS.gene83576.t1	MTR_4g009110	44.972	358	135	12	1	305	1	349	2.32e-78	243
MS.gene83576.t1	MTR_4g009540	44.545	330	118	14	1	285	1	310	1.67e-69	218
MS.gene83576.t1	MTR_2g104500	45.804	286	130	10	23	305	8	271	4.78e-66	208
MS.gene83576.t1	MTR_8g009020	49.388	245	108	5	77	308	84	325	4.77e-61	197
MS.gene83576.t1	MTR_2g104530	43.793	290	130	11	25	306	10	274	2.54e-58	189
MS.gene83576.t1	MTR_5g014600	40.523	306	131	12	42	305	38	334	1.68e-52	175

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83576.t1	AT4G37850	34.579	321	177	9	6	307	21	327	4.56e-45	156
MS.gene83576.t1	AT4G37850	34.579	321	177	9	6	307	21	327	4.56e-45	156
MS.gene83576.t1	AT2G22760	42.857	182	93	4	130	301	111	291	3.83e-38	137
MS.gene83576.t1	AT2G22750	37.657	239	127	6	78	300	65	297	2.48e-35	130
MS.gene83576.t1	AT2G22750	37.657	239	127	6	78	300	93	325	2.75e-35	130
MS.gene83576.t1	AT2G22750	37.657	239	127	6	78	300	89	321	3.12e-35	130
MS.gene83576.t1	AT2G22760	44.242	165	82	3	130	285	111	274	7.11e-35	128
MS.gene83576.t1	AT2G22750	37.657	239	126	7	78	300	65	296	6.71e-34	126
MS.gene83576.t1	AT2G22750	37.657	239	126	7	78	300	93	324	9.10e-34	126
MS.gene83576.t1	AT2G22770	36.161	224	108	4	116	304	95	318	7.87e-32	121

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Find 56 sgRNAs with CRISPR-Local

Find 423 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGACACAAATTCTGATC+AGG	0.480808	2.2:+1138107	MS.gene83576:CDS
AAGGAGAGAATGAATGTCCT+TGG	0.473742	2.2:-1133055	None:intergenic
AAGTAATAATAAGAGGAGTT+TGG	0.391916	2.2:+1133150	MS.gene83576:CDS
AATACTCTTGCTTTAACATC+GGG	0.413771	2.2:-1138153	None:intergenic
ACTACTTCAAGAACGTGTGA+AGG	0.641075	2.2:+1138020	MS.gene83576:CDS
AGAACGTGTGAAGGAGTTAG+AGG	0.469057	2.2:+1138029	MS.gene83576:CDS
AGAGTAGAAGTAATAATAAG+AGG	0.424376	2.2:+1133143	MS.gene83576:CDS
AGCAATTGCTTCTGAATATG+AGG	0.510804	2.2:+1139161	MS.gene83576:CDS
AGTGGAAAGAAGAGTAGAAG+TGG	0.563816	2.2:+1133199	MS.gene83576:CDS
AGTGTTATTACCGAATGAAG+AGG	0.617526	2.2:-1132682	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGATAATCAAGTACCAT+GGG	+	chr2.2:1135652-1135671	MS.gene83576:intron	30.0%
AAATGACACAAATTCTGATC+AGG	+	chr2.2:1138107-1138126	MS.gene83576:CDS	30.0%
AAGGGTTTAGAAATCAAACT+AGG	+	chr2.2:1135203-1135222	MS.gene83576:intron	30.0%
AATACTCTTGCTTTAACATC+GGG	-	chr2.2:1138156-1138175	None:intergenic	30.0%
ACCTTAATCTCTTCAATCAT+CGG	-	chr2.2:1137041-1137060	None:intergenic	30.0%
AGATTTGGATTCTCTTGAAT+TGG	-	chr2.2:1134323-1134342	None:intergenic	30.0%
AGGGTTTAGAAATCAAACTA+GGG	+	chr2.2:1135204-1135223	MS.gene83576:intron	30.0%
CAATACTCTTGCTTTAACAT+CGG	-	chr2.2:1138157-1138176	None:intergenic	30.0%
CATTATACACACCATGTAAA+AGG	+	chr2.2:1133602-1133621	MS.gene83576:intron	30.0%
CATTCTCTTTCTAATTGAAC+TGG	+	chr2.2:1138423-1138442	MS.gene83576:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	1132658	1139189	1132658	ID=MS.gene83576
chr2.2	mRNA	1132658	1139189	1132658	ID=MS.gene83576.t1;Parent=MS.gene83576
chr2.2	exon	1132658	1132693	1132658	ID=MS.gene83576.t1.exon1;Parent=MS.gene83576.t1
chr2.2	CDS	1132658	1132693	1132658	ID=cds.MS.gene83576.t1;Parent=MS.gene83576.t1
chr2.2	exon	1132860	1133321	1132860	ID=MS.gene83576.t1.exon2;Parent=MS.gene83576.t1
chr2.2	CDS	1132860	1133321	1132860	ID=cds.MS.gene83576.t1;Parent=MS.gene83576.t1
chr2.2	exon	1137976	1138329	1137976	ID=MS.gene83576.t1.exon3;Parent=MS.gene83576.t1
chr2.2	CDS	1137976	1138329	1137976	ID=cds.MS.gene83576.t1;Parent=MS.gene83576.t1
chr2.2	exon	1139112	1139189	1139112	ID=MS.gene83576.t1.exon4;Parent=MS.gene83576.t1
chr2.2	CDS	1139112	1139189	1139112	ID=cds.MS.gene83576.t1;Parent=MS.gene83576.t1

Gene Sequence

>MS.gene83576

ATGGAGCAATCATGGGAAAATTGGCCTCTTCATTCGGTAATAACACTAGCTACACATATCATTATTTCTCATAAGTTATACTATTTGTTTTTTTTTATAAACCGTAAATCATTATGATCAACAAAAAAAAATGTTATGTATCATTTATATTTTCTCATAAACCCTGATTTAATTTTTGAATTAACTGTTATTATTACAATAGGAAGTGGTTGATGTAGAGAATATGCAAGGGCAATATTGTCATCAAACAAGTATTGATGATGAAGAAGAGTTCTTGAGAGACATAATTCTTCAGCAACCTGTTACATATTCTGGAAGCAGTTTATCATCTTCTAGTGAGATGGACGGCTCAGATAGCTCAGGGAAAAAGCTTCATCCTTCATCAACACCGTCCACTCCAAGGACATTCATTCTCTCCTTTGATAAATCAACCATAATACCAGCTACTACTACACCAGAATCAGAACAAGAAGTACCAAGAACAAAGAGTAGAAGTAATAATAAGAGGAGTTTGGAAACAAAAGCAAAAGCTAGTAACCAAAGTGGAAAGAAGAGTAGAAGTGGTTCTCAGTGTTTGGATCACATTATGGCTGAGAGAAAAAGAAGATTAGAACTATCACAGAAGTTCATTGCACTTTCAGCTACTATTCCTGGCTTGAAGAAGGTAATAATTAAATTAAACTTGTCATTTTCATTTAATATTTACTTGCATATATGTGCTATTTTTTGTAGAGACATATATATATGTGCTATTTGTTTTTATCAAATAACCTAGAAATTGGAAATTCACTTAGGATAAATTAGGAGATTCTGGAGTTCAAACTTCACTCTCTGACTATCGTAATGTCTCTGTCAACTGAGATATTCTACTATAACCAAAATTGTATTTGTGTTATTATTATTTACAATAATGTTATGTTCACAACATTTTTTCCTCATGCTTCCATTATACACACCATGTAAAAGGACATTTTAGTAATTTTCATCTCATGTGAAAAATAGTGTTTGATGGGGTGGTATGACCACATATCACATTTGTGTGTCATGGTAGAAGATGTGTGTGCCATCTATGATGGTCAACATATAACCACTCGTTTGTTTACGCTAACTATATTTTTAGATCTGTGATAATTGTTGATTTCACTATTTTATTATTACATGGTATCATTCTGCTTCACTTTGATTCAACAGAGATACTGTTATAATTTTGCGAGAAACTATTTTCTTATTAAGATGATAAGATAATAAAATTATCAAGATCAAGTTTGTATAGTTGAAATTAAATATTCGTATAATTTATTATGAACTCAGAGTTTGGCAATATAATACTGAAAAAACAGTTACGAAGATGAAGCACGGATACAGGCACGGACACTGAACATGCGACACCATTAGTAATTAAGAAAATCACATAATTCAATATAATTATACATAATTTAGTATAACTATGTGTTGGTCTCGTGTCGGTGTCGGATACAATACGTGTCCAACATCAGAACACGCATAACTGATAAGTATCCGTCCTTCATAGATACTGAGAACAAAAAGTCTTCGCATTGATACTCACACTTGTGATGAGCAGCGAGCGGTGCTGCCAATGACACGGGATCTTGACATTTCCAAGATATAACTCATCAGAACAGAACAAATCCATATTCAAATCCAATTCAAGAGAATCCAAATCTTATAGTGATAGAGAGTCAATTTGATACTAAATACTCTATTATTACAAGTGGCTCGAGTAAGTTTCACGTAGTTGTAAGAATAATTTTGTTTTTTTGAAGGAGTAAGAATAAATTTGTTAAAAAATATACTACCATCCATGCCATACGTAGTGAAAAAATAAAAGTTGAGTTAATAAAAATTGATGTTCTGTCGGATTACCCTTTTTTAATGTATAATAAATAAAAATATGTATAAATGTGAAATTTAAAAGTTTAAGTAAATCGTAATATTTACTAGAAATAGTAAATGTCTACTGTTTACTAAAAATAAATAAAGGATGGATTTGTAAAAAAAACTCACAAATAAACATTAAGACAACAAAACAAACAATGGCGCCAAGATGAGAAGTAAAACAACATCAAACTTGGATGAAATTGTGAACAAGTTCACAAAACAAAATTAAAACGACAAAACAAACAATATCGTATCAAGATGACAAAAAAAATGTTACAAAAACATGATGATAAGAAAAAACAATATATATGTGATATTGACTTCTTTTCTTTTGGGACTAATTTTCTGATAATAAATTTTCTTTCCAAAAAAAAAAAAAGAACTAATTTTAATGTTGTGAAAGTGACTCAAAATTGGAGTTTGGAGGCCAAAATTGATGTTTGCTGAAAGTACAAATCGGTGGCCGATTTTGGCTGCCTTTTGGGAGGTTTTCTGTTCGGGAAAAATCGGTGGCCGATTTCGCGTGCTGTTATTTTTCAGAAACGTATTTTTGGGCCAGATTTGTTACAATTTTATGGGAGTTTCTTTTACTATAAATATAGGCCTTGTATCAGACTATTTTGAGAGAGATAGAGGGGGCTGAAACAAGGGTTTAGAAATCAAACTAGGGTTTGTATAGAGTTTGTCTCTTGGCAACAAACTAGGGTTTGAAGGTTGATTCACCTTGGGAAACACTATTAGGATTGAGTCTCTTGGTTACGGGAAGAGGCTGGGATTTGGGTAGAATTAGGCGGGAGACTTATTCTTGTAACCCATTGAAATCTCTTTTGTAACGTTACTCATCATATAGTGGAATGGAGGGCTGCTCTCTCCCCCAGACTAGGTCAATTTGGACCGAACTGGGTCAACAAATTCTTTGTGTTCTCTCTTCCTTTTCTCTCGCTGTTGTTTTCTACTTTTGGCTTGTGTTTATAATTGTTCCATACACTTTGATTTTGGTTGCTTAATTATCCCTTGCTCCACACATCAAGTTGTTATTGGTGTGAGTTTTTCATCGAATTCGCAACAATTGGCGCCCACCGTGGGGCAAAGGTCAAAGGATAATCAAGTACCATGGGTTCGAAGTGGGATATTGAGAAGTTTACCGGAGATAACGATTTTGGGTTATGGAAGGTAAAGATGGAAGCGGTGTTAATACAACAGAAGTGTGAGAAAGCTTTGAAGGGTGAAGGTTCGTTACCAGTCACCATGACACGAGCGGAGAAGACCGAGATGGTGGACAAGGCCAGGAGTGCCATTGTCTTGTGCCTCGGAGATAAAGTTTTGAGAGAAGTGGCAAAGGAACCAACCGCGGCATCGATGTGGGCAAAGTTGGAATCTTTGTATATGACAAAGTCTTTGGCTCATCGGCAATTCCTAAAGCAACAACTCTACTCATTCAAGATGGTGGAGTCAAAGGCCATCATGGAGCAACTTACGGAGTTCAACAAAATCCTTGATGACTTGGAGAATATTGAGGTGAATCTTGAGGATGAAGATAAAGCTATACTCTTGTTGTGTGCTCTACCTAGATCTTTTGAATCGTTTAAAGATACCATGCTCTATGGAAAAGAAGGCACTGTTACCTTGGAAGAAGTTCAAGCAGCTTTGAGAACCAAGGAGTTGACTAAGTCGAAGGACTTGAGAGTTGATGAAAACGGGGAAGGCCTAAGTGTTTCAAGAGGGAATGATGGAGGTAGAGGTAACCGGGGAAAGAGTAGTAACAAGACAAAGTTTAAATGCTTTAAGTGTAACAAGATGGGTCACTTCAAGAAGGATTGTCCGGAGATTAGTAATTCCGTACAAATTGTCTCTGAGGGTTATGAGGATGCAGGTGCTTTGATGGTGTGCTGTTTAGAGGATGAAGGTGATGTTTCTCACCTTGGGGGTGATGCCTGGTAGAGCGGTGATCGTCTGGAGAGACGTTATACACTCAACATCAGCCTGGAGAGGCGGTGGTAAGAATACTCATGATCTACCGGTTGAGGTGGAGGTTCAAGGAAGACATAGTGGGATGTACTCATTTGCTAGTTGAGAGGTTGGAAGCTCAGCTTTAGGTGGAGTTGAACACACCGGGAGTGGTACGACTATGAAGGACCTTGGGTGCTATGCTCTAGTGGTGAGCAAGGGTTTTCTTCATGAAGACGGAAGGCATTCCGGAGGTTGAAGAATGTATAGCACGGCTTGTGGAATTACCCTAAAAGTCCAAGGGTGATTGGATGCAAGGTGATCTTCAAGGAAGCGGGAGATGTCTCGTATTGAAGAGGTATGGTGTAGTCTTGTAGAACTACCTGAAATTCCTAGTGTAGTTTGGATACAAGGATCTTCGAGAAGGCGGAAGACATTCCGATGGCTGAAGAGGTTAAGGTGTGTACTTGTGGAACTACCTAAAATTCCTTGAGTAGTTTGGACACAAGGATCTTCAAAGGGGCGGAAGGCATTCCGATGATTGAAGAGATTAAGGTGTAAACTTGTGGAGCTACTTGGTGTAGTGGGAAGCAAGGGAAAGAGCAGCAAGGTGTTGATGTTAAATGGGCATCATCACTAATTTGGAGTCAAGGTGGAGATTGTTGTGAAAGTGACTCAAAATTGGAGTTTGGAGGCCAAAATTGATGTTTGCTGAAAGTACAAATCGGTGGCCGATTTGGAAAATCGGTGGCCGATTTTGGCTGCCTTTTGGGAGGTTTTCTGTTCGGGAAAAATCGGTGGCCGATTGGGAAAAATCGGTGGCCGATTGGGAAAAATCGGTGGCCGATTTCGCGTGCTGTTATTTTTCAGAAACATATTTTTGGGCCAGATTTGTTACAATTTTATGGGAGTTTCTTTTACTATAAATATAGGCCTTGTATCAGACTATTTTGAGAGAGATAGAGGGGGCTGAAACAAGGGTTTAGAAATCAAACTAGGGTTTGTATAGAGTTTGTCTCTTGGCAACAAACTAGGGTTTGAAGGTTGATTCACCTTGGGAAACACTATTAGGATTGAGTCTCTTGGTTACGGGAAGAGGCTGGGATTTGGGTAGAATTAGGCGGGAGACTTATTCTTGTAACCCATTGAAATCTCTTTTGTAACGTTACTCATCATATAGTGGAACGGAGGGCTGCTCTCTCCCCCAGACTAGGTCAATTTGGACCGAACTGGGTCAACAAATTCTTTGTGTTCTCTCTTCCTTTTCTCTCGCTGTTGTTTTCTACTTTTGGCTTGTGTTTATAATTGTTCCATACACTTTGATTTTGGTTGCTTAATTATCCCTTGCTCCACACATCAAGTTGTTATTGGTGTGAGTTTTTCATCGAATTCGCAACATTTAAGATCCTCAACTACTACTATCTTAAAGTAGCATTAACATATTGAATGATTCTGCATAAATTAATTGATAGATGGACAAGACCTCTATACTTGGTGAAGCAATCAATTATGTGAAACTACTTCAAGAACGTGTGAAGGAGTTAGAGGAACGGAACAAGAGGAACATCGAATCAACAATAATCCACAAAAGTGATTTGTGTACAAATGACACAAATTCTGATCAGGATTGTTGTAAACCATCATCACTCCCCGATGTTAAAGCAAGAGTATTGGAAAATGAAGTGCTCATTGAGATCCACTGTGAGAAGGAAAATGGCATTGAGATCAAAATATTGAACTTGCTTGAAAATCTTCATCTTATTGTCACTGCCAGCAGTGTATTTCCTTTTGGGAATTCAACTCTTGGCTTCACTATTGTTGCTCAGGTACGTAAGCATTGCATTTTGCAAGACTTTCATGAGACAAGTTTATGATTCTATAAGCTTTTAAATAAACCATCCCATTTAATTATTAAATATCATTCTCTTTCTAATTGAACTGGTGTACTCAATTCTTTAAAAGTTTATACAATGCATTCATTTCTCAATATAAAACTTCTTAGCATTACCCTAAATATATTTATTTATTGTTAAAATGATCTATAACAAAATTTGTCACTTTAAAGACAAGTAGTGGTGTAAAATCGTGAAAGATTCTTGAGACATTTTAGTGTTATTCTTTTAAAAATACCTCATTTAAAAATTTGTTTTAGACTTAGAAATGTGTTGGGCCTACTATGATTTAGAGTACTTTTTTTTACATAATGATTAAGAAAAATTGCTCTAGCTATCCCTCAAGTTGTTCAACTCCTAAAAATAAGTTGATCATGAGTCACGTTCGAGTAATAAAAAATTGATCCGGTCATAACTTCCGATTGATTTATGCGACCGGAGTTATGGTCTGATAGATCCGAAGAACTTTTAAACAACTTGAGAGACGGATAGAGCAATTGCCATGACTTAGAGTACTTGAAAACTAACAAACAGGCTAATAGTATTACAACTGAGGGCCCTTGGAGCGTACGATGATAAATAGCATTTATTAAAGTATGCTTTCAACAAGGCTGGTGAAAAAATTAAGAGCCATGAAATATGACATGACATGACATGATTGTAAGGTAAAATTTATTACAATTTGTTTTGCATTGCAATAACATGATGTCTTGCAGATGGGTGACGAGTACAAAATGAAGGTGAATGATCTGGTGAAAACCATGCAGCAATTGCTTCTGAATATGAGGAGTTGA

Protein sequence

>MS.gene83576.t1

MEQSWENWPLHSEVVDVENMQGQYCHQTSIDDEEEFLRDIILQQPVTYSGSSLSSSSEMDGSDSSGKKLHPSSTPSTPRTFILSFDKSTIIPATTTPESEQEVPRTKSRSNNKRSLETKAKASNQSGKKSRSGSQCLDHIMAERKRRLELSQKFIALSATIPGLKKMDKTSILGEAINYVKLLQERVKELEERNKRNIESTIIHKSDLCTNDTNSDQDCCKPSSLPDVKARVLENEVLIEIHCEKENGIEIKILNLLENLHLIVTASSVFPFGNSTLGFTIVAQMGDEYKMKVNDLVKTMQQLLLNMRS