AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050216


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050216.t1 MTR_1g090380 95.406 283 5 2 43 325 1 275 0.0 547
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050216.t1 AT2G38680 67.944 287 86 5 42 325 40 323 4.83e-134 385

Find 64 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAATGGAGGATATCAAAT+TGG 0.201664 1.2:-67597649 MS.gene050216:CDS
ATGCCACATTAACAAAGTTT+TGG 0.238917 1.2:-67597060 MS.gene050216:CDS
CGCTGGTCCTCAAAAGCTTC+AGG 0.241520 1.2:-67597559 MS.gene050216:intron
TCCAATATTAACAGGTTCTA+AGG 0.257059 1.2:-67596133 MS.gene050216:intron
AGAACCAATGTTCTCCTTCT+TGG 0.265210 1.2:-67595497 MS.gene050216:CDS
TTCATATAACTGCTGCCTTT+TGG 0.338973 1.2:+67596879 None:intergenic
TCACCGAATCGTTCGTGAAC+AGG 0.376885 1.2:+67595560 None:intergenic
AGTTTGTTGTGGAGCAAAAC+AGG 0.387622 1.2:+67597597 None:intergenic
AAATGAGCATGCTCTTGATA+TGG 0.389669 1.2:-67595588 MS.gene050216:CDS
TTGTGGAAAACATTTGGAAA+TGG 0.410077 1.2:-67597664 MS.gene050216:CDS
GAAATGGAGGATATCAAATT+GGG 0.419430 1.2:-67597648 MS.gene050216:CDS
TTCAGAATTGACGCTGGTGG+TGG 0.419541 1.2:-67597625 MS.gene050216:CDS
CCTGTATTAATATTCTCTGC+AGG 0.422018 1.2:-67596283 MS.gene050216:CDS
CCCTTGGGCTGGAAGAGAAA+AGG 0.437854 1.2:-67596828 MS.gene050216:CDS
CCTGCAGAGAATATTAATAC+AGG 0.451901 1.2:+67596283 None:intergenic
ACGCATGCTCTTCTTATTGA+AGG 0.454576 1.2:-67596557 MS.gene050216:CDS
TGGTGATCACACTGGAGACT+TGG 0.455229 1.2:-67595477 MS.gene050216:CDS
GAACGATTCGGTGATATTGA+TGG 0.458869 1.2:-67595551 MS.gene050216:CDS
CTGGATTATCCTGCTGCAAA+AGG 0.467977 1.2:+67596911 None:intergenic
AACCCAAAACTTTGTTAATG+TGG 0.470399 1.2:+67597057 None:intergenic
ATGTGAAGATAGTATCCAAC+AGG 0.474848 1.2:-67596085 MS.gene050216:CDS
CTTGCTGCAATTCGTTCCGC+TGG 0.481743 1.2:-67597576 MS.gene050216:CDS
AGTTGGAGGCGATAGCTCAT+TGG 0.482900 1.2:+67597857 None:intergenic
AGTTGGTGGTGACGATGGAT+TGG 0.487760 1.2:+67597834 None:intergenic
AGCAAGTCATTGTCATCAGT+TGG 0.490335 1.2:+67595527 None:intergenic
TGGTGACGATGGATTGGAGT+TGG 0.494711 1.2:+67597840 None:intergenic
GAGCCTGTTCACGAACGATT+CGG 0.505027 1.2:-67595563 MS.gene050216:CDS
TACGATACTCGAATTTCTGT+GGG 0.505866 1.2:-67595434 MS.gene050216:CDS
TGGAAAACATTTGGAAATGG+AGG 0.511488 1.2:-67597661 MS.gene050216:CDS
CACCTTTAAAAGATACAAGT+TGG 0.511666 1.2:+67596045 None:intergenic
ATCCAGAATATGATGCCAAA+AGG 0.511735 1.2:-67596894 MS.gene050216:CDS
ATTGTTAAATACCATCCTGT+TGG 0.514081 1.2:+67596070 None:intergenic
ATATGAACATTACCATCCAT+TGG 0.515894 1.2:-67596863 MS.gene050216:CDS
CTGTATTAATATTCTCTGCA+GGG 0.521088 1.2:-67596282 MS.gene050216:CDS
GAGTCATTTGTAGGCAGTCA+TGG 0.540817 1.2:-67596934 MS.gene050216:intron
CTCCTTCTTGGTGATCACAC+TGG 0.541831 1.2:-67595485 MS.gene050216:CDS
GGTGATCACACTGGAGACTT+GGG 0.548044 1.2:-67595476 MS.gene050216:CDS
TCAGAATTGACGCTGGTGGT+GGG 0.550336 1.2:-67597624 MS.gene050216:CDS
GAATTGCAGCAAGTTTGTTG+TGG 0.553040 1.2:+67597586 None:intergenic
GCTACACTTCTTCAACATCA+AGG 0.560582 1.2:-67597790 MS.gene050216:intron
AAAGTGACGTGGGAGAAAGT+TGG 0.564371 1.2:+67597817 None:intergenic
GAGAAAGTTGGTGGTGACGA+TGG 0.566081 1.2:+67597829 None:intergenic
TAGGAGAAAATTCCAATGGA+TGG 0.567633 1.2:+67596851 None:intergenic
TGATGTTGAAGAAGTGTAGC+GGG 0.570667 1.2:+67597793 None:intergenic
GGAGACTTGGGAATGTCTGA+TGG 0.575829 1.2:-67595464 MS.gene050216:CDS
TTACGATACTCGAATTTCTG+TGG 0.585256 1.2:-67595435 MS.gene050216:CDS
TGACGATGGATTGGAGTTGG+AGG 0.602766 1.2:+67597843 None:intergenic
AAAGGAAACTCATGGTAGAG+TGG 0.614036 1.2:-67596810 MS.gene050216:CDS
TTCTCTTCCAGCCCAAGGGT+AGG 0.615641 1.2:+67596832 None:intergenic
CTCCAGTGTGATCACCAAGA+AGG 0.618740 1.2:+67595483 None:intergenic
CATGCTCTTCTTATTGAAGG+AGG 0.621492 1.2:-67596554 MS.gene050216:CDS
AGGGTAGGAGAAAATTCCAA+TGG 0.624608 1.2:+67596847 None:intergenic
GGAAGAGAAAAGGAAACTCA+TGG 0.628987 1.2:-67596818 MS.gene050216:CDS
GTGACGTGGGAGAAAGTTGG+TGG 0.633859 1.2:+67597820 None:intergenic
GCTTGCTGATATCATTGAAG+AGG 0.634896 1.2:-67596260 MS.gene050216:intron
AACAGGATGGTATTTAACAA+TGG 0.634907 1.2:-67596068 MS.gene050216:CDS
GAAGATAGTATCCAACAGGA+TGG 0.654156 1.2:-67596081 MS.gene050216:CDS
ATCACCAAGAAGGAGAACAT+TGG 0.655582 1.2:+67595493 None:intergenic
GTGTAGCGGGAAAAGTGACG+TGG 0.663698 1.2:+67597806 None:intergenic
ATTGGGTTCAGAATTGACGC+TGG 0.663874 1.2:-67597631 MS.gene050216:CDS
GGGTTCAGAATTGACGCTGG+TGG 0.671068 1.2:-67597628 MS.gene050216:CDS
TTGATGTTGAAGAAGTGTAG+CGG 0.688175 1.2:+67597792 None:intergenic
TAAGTGAGTTCTCAACGTTG+TGG 0.688216 1.2:+67595268 None:intergenic
TGTAGCGGGAAAAGTGACGT+GGG 0.689625 1.2:+67597807 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATAAATCTTAGAATT+TGG + chr1.2:67595980-67595999 None:intergenic 10.0%
!! AAATATAAATCTTAGAATTT+GGG + chr1.2:67595979-67595998 None:intergenic 10.0%
!!! ATGTAATTTTTTTTCTTTTA+AGG - chr1.2:67595380-67595399 MS.gene050216:intron 10.0%
!!! ATTTATATTTTCTTTTTTGT+AGG - chr1.2:67595989-67596008 MS.gene050216:intron 10.0%
!!! CTGTTTTTTTTTTTTTTTAT+GGG - chr1.2:67596364-67596383 MS.gene050216:intron 10.0%
!!! TCTGTTTTTTTTTTTTTTTA+TGG - chr1.2:67596363-67596382 MS.gene050216:intron 10.0%
!!! TGTAATTTTTTTTCTTTTAA+GGG - chr1.2:67595381-67595400 MS.gene050216:intron 10.0%
!! AAAAAAAATTACATGCAATA+AGG + chr1.2:67595374-67595393 None:intergenic 15.0%
!! AAAAAAATTACATGCAATAA+GGG + chr1.2:67595373-67595392 None:intergenic 15.0%
!! AAAAATAACAAAATGGAAAA+TGG + chr1.2:67596769-67596788 None:intergenic 15.0%
!! ATATATTTGTCAAAGAAAAA+TGG + chr1.2:67596656-67596675 None:intergenic 15.0%
!!! TCATCTTAAGTTTTTATATT+CGG + chr1.2:67595857-67595876 None:intergenic 15.0%
!! AAAAAATTACATGCAATAAG+GGG + chr1.2:67595372-67595391 None:intergenic 20.0%
!! AAACTCAATTATCAATGAAA+TGG + chr1.2:67595566-67595585 None:intergenic 20.0%
!! AACTCAATTATCAATGAAAT+GGG + chr1.2:67595565-67595584 None:intergenic 20.0%
!! AATACACAATAAATGAAAGT+TGG + chr1.2:67597079-67597098 None:intergenic 20.0%
!! CATAATAATTAATTGCCTTT+AGG - chr1.2:67597158-67597177 MS.gene050216:intron 20.0%
!! TAATTGCATAACACAAAATT+GGG - chr1.2:67595630-67595649 MS.gene050216:intron 20.0%
!! TTAATTATTATGTAATTCCC+CGG + chr1.2:67597150-67597169 None:intergenic 20.0%
!! TTTCCTGAAAAATAACAAAA+TGG + chr1.2:67596776-67596795 None:intergenic 20.0%
!!! AAGTCTATTTTGTTTTATGT+TGG - chr1.2:67596856-67596875 MS.gene050216:CDS 20.0%
!!! TATGCAAATATATTTTTCAG+AGG - chr1.2:67597124-67597143 MS.gene050216:intron 20.0%
!!! TGATATGTTCATTTTATATC+AGG - chr1.2:67596688-67596707 MS.gene050216:intron 20.0%
!!! TTAAGATTTGGTGTATTATT+AGG - chr1.2:67596499-67596518 MS.gene050216:CDS 20.0%
!!! TTTCCATTTTGTTATTTTTC+AGG - chr1.2:67596770-67596789 MS.gene050216:intron 20.0%
! AAAAATTACATGCAATAAGG+GGG + chr1.2:67595371-67595390 None:intergenic 25.0%
! AAATTCTCAATCCTACAAAA+CGG + chr1.2:67595953-67595972 None:intergenic 25.0%
! AATAGTCATGTAACATACTT+TGG + chr1.2:67596070-67596089 None:intergenic 25.0%
! ACCAGAAAAAAAATTAAGTC+AGG + chr1.2:67597779-67597798 None:intergenic 25.0%
! ACTCAATTATCAATGAAATG+GGG + chr1.2:67595564-67595583 None:intergenic 25.0%
! ATTTAATTATGTTTAAGCCC+TGG - chr1.2:67597228-67597247 MS.gene050216:intron 25.0%
! CAAGCATTATTATATAGTGT+GGG + chr1.2:67595736-67595755 None:intergenic 25.0%
! CCAGAAAAAAAATTAAGTCA+GGG + chr1.2:67597778-67597797 None:intergenic 25.0%
! GTAATTGCATAACACAAAAT+TGG - chr1.2:67595629-67595648 MS.gene050216:intron 25.0%
! TCAAGCATTATTATATAGTG+TGG + chr1.2:67595737-67595756 None:intergenic 25.0%
! TGTAAAATTGAGATACTAGT+GGG - chr1.2:67595784-67595803 MS.gene050216:intron 25.0%
! TTGTAAAATTGAGATACTAG+TGG - chr1.2:67595783-67595802 MS.gene050216:intron 25.0%
! TTTATTGTGTATTTGTTTGC+TGG - chr1.2:67597086-67597105 MS.gene050216:intron 25.0%
!! ATTTCTCTTCATTTTCTTGT+CGG - chr1.2:67596893-67596912 MS.gene050216:CDS 25.0%
!! ATTTTGTATAGGAGAAAACA+AGG + chr1.2:67597355-67597374 None:intergenic 25.0%
!! GTATCTCAATTTTACAAAAG+TGG + chr1.2:67595780-67595799 None:intergenic 25.0%
!! TAATGCTAACATAGCTTTTA+GGG - chr1.2:67596589-67596608 MS.gene050216:intron 25.0%
!! TACTATCTTCACATTTTTGA+AGG + chr1.2:67596996-67597015 None:intergenic 25.0%
!! TCGAAAATCTGATTTTGTAT+AGG + chr1.2:67597366-67597385 None:intergenic 25.0%
!!! ATTTTGTTGTGGAAAACATT+TGG - chr1.2:67595417-67595436 MS.gene050216:intron 25.0%
!!! TATTTTGTTTTATGTTGGCA+AGG - chr1.2:67596861-67596880 MS.gene050216:CDS 25.0%
!!! TGTTTAAGAGTCTCATTTTT+GGG - chr1.2:67595817-67595836 MS.gene050216:intron 25.0%
!!! TTAACAAAGTTTTGGGTTAA+TGG - chr1.2:67596035-67596054 MS.gene050216:intron 25.0%
AAAATTACATGCAATAAGGG+GGG + chr1.2:67595370-67595389 None:intergenic 30.0%
AAAGGTAAAAAAGAGAAGAG+GGG + chr1.2:67595341-67595360 None:intergenic 30.0%
AACAGGATGGTATTTAACAA+TGG - chr1.2:67597019-67597038 MS.gene050216:intron 30.0%
AACCCAAAACTTTGTTAATG+TGG + chr1.2:67596033-67596052 None:intergenic 30.0%
ATATGAACATTACCATCCAT+TGG - chr1.2:67596224-67596243 MS.gene050216:intron 30.0%
ATTGTTAAATACCATCCTGT+TGG + chr1.2:67597020-67597039 None:intergenic 30.0%
CTCCAAAAATTCAAAAAGCT+CGG + chr1.2:67596624-67596643 None:intergenic 30.0%
CTGTATTAATATTCTCTGCA+GGG - chr1.2:67596805-67596824 MS.gene050216:intron 30.0%
GAAAGGTAAAAAAGAGAAGA+GGG + chr1.2:67595342-67595361 None:intergenic 30.0%
GAAATGGAGGATATCAAATT+GGG - chr1.2:67595439-67595458 MS.gene050216:CDS 30.0%
GAGCTCAATTAATGTCTATA+AGG - chr1.2:67597731-67597750 MS.gene050216:intron 30.0%
GTAACTAGTAAGTAAACTCT+GGG + chr1.2:67596410-67596429 None:intergenic 30.0%
TAACTAGTAAGTAAACTCTG+GGG + chr1.2:67596409-67596428 None:intergenic 30.0%
TATCTAATCGAGTCATTTGT+AGG - chr1.2:67596144-67596163 MS.gene050216:intron 30.0%
TCCAATATTAACAGGTTCTA+AGG - chr1.2:67596954-67596973 MS.gene050216:intron 30.0%
TGATGCTGTAACTTAAGATT+TGG - chr1.2:67596487-67596506 MS.gene050216:CDS 30.0%
TGTAACTAGTAAGTAAACTC+TGG + chr1.2:67596411-67596430 None:intergenic 30.0%
TTGTGGAAAACATTTGGAAA+TGG - chr1.2:67595423-67595442 MS.gene050216:intron 30.0%
! ATGCCACATTAACAAAGTTT+TGG - chr1.2:67596027-67596046 MS.gene050216:intron 30.0%
! CACCTTTAAAAGATACAAGT+TGG + chr1.2:67597045-67597064 None:intergenic 30.0%
! CTAATGCTAACATAGCTTTT+AGG - chr1.2:67596588-67596607 MS.gene050216:intron 30.0%
! GTGTTTAAGAGTCTCATTTT+TGG - chr1.2:67595816-67595835 MS.gene050216:intron 30.0%
! TCCTAATTTTTGACGTGTAA+GGG + chr1.2:67596112-67596131 None:intergenic 30.0%
! TCGTTTTCTACATTTTGTTG+TGG - chr1.2:67595406-67595425 MS.gene050216:intron 30.0%
! TGCCACATTAACAAAGTTTT+GGG - chr1.2:67596028-67596047 MS.gene050216:intron 30.0%
! TTCCGAGCTTTTTGAATTTT+TGG - chr1.2:67596619-67596638 MS.gene050216:intron 30.0%
! TTCCTAATTTTTGACGTGTA+AGG + chr1.2:67596113-67596132 None:intergenic 30.0%
!! AAATATATTTTTCAGAGGCC+GGG - chr1.2:67597129-67597148 MS.gene050216:intron 30.0%
!! AGATTTGGTGTATTATTAGG+TGG - chr1.2:67596502-67596521 MS.gene050216:CDS 30.0%
!! ATTTGGTGTATTATTAGGTG+GGG - chr1.2:67596504-67596523 MS.gene050216:CDS 30.0%
!! CAAATATATTTTTCAGAGGC+CGG - chr1.2:67597128-67597147 MS.gene050216:intron 30.0%
!! GATTTGGTGTATTATTAGGT+GGG - chr1.2:67596503-67596522 MS.gene050216:CDS 30.0%
!! TACTTCTCAATTTTGATCAC+AGG - chr1.2:67597452-67597471 MS.gene050216:intron 30.0%
!!! CCCTGACTTAATTTTTTTTC+TGG - chr1.2:67597775-67597794 MS.gene050216:intron 30.0%
!!! TCGCTTTTTCCAATATTAAC+AGG - chr1.2:67596946-67596965 MS.gene050216:intron 30.0%
AAATCACAGCAATTAGAGTC+TGG + chr1.2:67597701-67597720 None:intergenic 35.0%
AAATGAGCATGCTCTTGATA+TGG - chr1.2:67597499-67597518 MS.gene050216:intron 35.0%
AACTAGTAAGTAAACTCTGG+GGG + chr1.2:67596408-67596427 None:intergenic 35.0%
AAGGTAAAAAAGAGAAGAGG+GGG + chr1.2:67595340-67595359 None:intergenic 35.0%
ATCCAGAATATGATGCCAAA+AGG - chr1.2:67596193-67596212 MS.gene050216:intron 35.0%
ATGTGAAGATAGTATCCAAC+AGG - chr1.2:67597002-67597021 MS.gene050216:intron 35.0%
ATTGAATATCACTGTACCTC+TGG + chr1.2:67596454-67596473 None:intergenic 35.0%
CCTGCAGAGAATATTAATAC+AGG + chr1.2:67596807-67596826 None:intergenic 35.0%
CCTGTATTAATATTCTCTGC+AGG - chr1.2:67596804-67596823 MS.gene050216:intron 35.0%
GCCTTAGAACCTGTTAATAT+TGG + chr1.2:67596958-67596977 None:intergenic 35.0%
GGAAAGGTAAAAAAGAGAAG+AGG + chr1.2:67595343-67595362 None:intergenic 35.0%
GGAAATGGAGGATATCAAAT+TGG - chr1.2:67595438-67595457 MS.gene050216:CDS 35.0%
GTATTACCAGTGAAACCTAA+AGG + chr1.2:67597176-67597195 None:intergenic 35.0%
TACGATACTCGAATTTCTGT+GGG - chr1.2:67597653-67597672 MS.gene050216:CDS 35.0%
TAGGAGAAAATTCCAATGGA+TGG + chr1.2:67596239-67596258 None:intergenic 35.0%
TCCCTTACACGTCAAAAATT+AGG - chr1.2:67596108-67596127 MS.gene050216:CDS 35.0%
TGGAAAACATTTGGAAATGG+AGG - chr1.2:67595426-67595445 MS.gene050216:intron 35.0%
TTACGATACTCGAATTTCTG+TGG - chr1.2:67597652-67597671 MS.gene050216:CDS 35.0%
! ACCTTACAAATCCGTTTTGT+AGG - chr1.2:67595939-67595958 MS.gene050216:intron 35.0%
! CAATGCTGGTCTACATATAT+AGG - chr1.2:67596317-67596336 MS.gene050216:intron 35.0%
! GAAAAAACCTGAAGCTTTTG+AGG + chr1.2:67595538-67595557 None:intergenic 35.0%
! GGCCAACTTGTATCTTTTAA+AGG - chr1.2:67597040-67597059 MS.gene050216:CDS 35.0%
! TAATTGCCTTTAGGTTTCAC+TGG - chr1.2:67597167-67597186 MS.gene050216:intron 35.0%
! TCCTACAAAACGGATTTGTA+AGG + chr1.2:67595943-67595962 None:intergenic 35.0%
! TTCATATAACTGCTGCCTTT+TGG + chr1.2:67596211-67596230 None:intergenic 35.0%
! TTGATGTTGAAGAAGTGTAG+CGG + chr1.2:67595298-67595317 None:intergenic 35.0%
!! AATATATTTTTCAGAGGCCG+GGG - chr1.2:67597130-67597149 MS.gene050216:intron 35.0%
!! CGAGCTTTTTGAATTTTTGG+AGG - chr1.2:67596622-67596641 MS.gene050216:intron 35.0%
!! CTGGTATTTTGAATTGTTGC+AGG - chr1.2:67597794-67597813 MS.gene050216:CDS 35.0%
!! TAAGAGTCTCATTTTTGGGA+GGG - chr1.2:67595821-67595840 MS.gene050216:intron 35.0%
!! TTAAGAGTCTCATTTTTGGG+AGG - chr1.2:67595820-67595839 MS.gene050216:intron 35.0%
AAAGGAAACTCATGGTAGAG+TGG - chr1.2:67596277-67596296 MS.gene050216:CDS 40.0%
ACGCATGCTCTTCTTATTGA+AGG - chr1.2:67596530-67596549 MS.gene050216:CDS 40.0%
AGAACCAATGTTCTCCTTCT+TGG - chr1.2:67597590-67597609 MS.gene050216:CDS 40.0%
AGCAAGTCATTGTCATCAGT+TGG + chr1.2:67597563-67597582 None:intergenic 40.0%
AGGGTAGGAGAAAATTCCAA+TGG + chr1.2:67596243-67596262 None:intergenic 40.0%
ATCACCAAGAAGGAGAACAT+TGG + chr1.2:67597597-67597616 None:intergenic 40.0%
CATGCTCTTCTTATTGAAGG+AGG - chr1.2:67596533-67596552 MS.gene050216:CDS 40.0%
GAAGATAGTATCCAACAGGA+TGG - chr1.2:67597006-67597025 MS.gene050216:intron 40.0%
GAAGATTCGATTGCTGACAT+TGG - chr1.2:67596740-67596759 MS.gene050216:intron 40.0%
GCTACACTTCTTCAACATCA+AGG - chr1.2:67595297-67595316 MS.gene050216:intron 40.0%
GGAAGAGAAAAGGAAACTCA+TGG - chr1.2:67596269-67596288 MS.gene050216:CDS 40.0%
TAAGTGAGTTCTCAACGTTG+TGG + chr1.2:67597822-67597841 None:intergenic 40.0%
TATATAGTGTGGGACTTCTC+AGG + chr1.2:67595726-67595745 None:intergenic 40.0%
TGGTAGAGTGGTATGTGATT+CGG - chr1.2:67596289-67596308 MS.gene050216:CDS 40.0%
! GCTTGCTGATATCATTGAAG+AGG - chr1.2:67596827-67596846 MS.gene050216:CDS 40.0%
! TGATGTTGAAGAAGTGTAGC+GGG + chr1.2:67595297-67595316 None:intergenic 40.0%
! TGCCTTTTGGCATCATATTC+TGG + chr1.2:67596198-67596217 None:intergenic 40.0%
! TGGAATTTTCTCCTACCCTT+GGG - chr1.2:67596244-67596263 MS.gene050216:intron 40.0%
! TTGGAATTTTCTCCTACCCT+TGG - chr1.2:67596243-67596262 MS.gene050216:intron 40.0%
!! AGTTTGTTGTGGAGCAAAAC+AGG + chr1.2:67595493-67595512 None:intergenic 40.0%
!! GAACGATTCGGTGATATTGA+TGG - chr1.2:67597536-67597555 MS.gene050216:intron 40.0%
!! GAATTGCAGCAAGTTTGTTG+TGG + chr1.2:67595504-67595523 None:intergenic 40.0%
!! GCTAACATAGCTTTTAGGGA+AGG - chr1.2:67596593-67596612 MS.gene050216:intron 40.0%
!!! TTTTGGGTTAATGGAACTCG+CGG - chr1.2:67596044-67596063 MS.gene050216:intron 40.0%
AAAGTGACGTGGGAGAAAGT+TGG + chr1.2:67595273-67595292 None:intergenic 45.0%
AGAGGGGGTGAAGAAGAAAA+AGG + chr1.2:67595325-67595344 None:intergenic 45.0%
ATTGGGTTCAGAATTGACGC+TGG - chr1.2:67595456-67595475 MS.gene050216:CDS 45.0%
CTGGATTATCCTGCTGCAAA+AGG + chr1.2:67596179-67596198 None:intergenic 45.0%
GAGTCATTTGTAGGCAGTCA+TGG - chr1.2:67596153-67596172 MS.gene050216:intron 45.0%
GAGTGTGACTCGATTGATCT+TGG + chr1.2:67595893-67595912 None:intergenic 45.0%
! TCACACATTTTGTGCACCAG+AGG - chr1.2:67596435-67596454 MS.gene050216:intron 45.0%
!! ACGTGTAAGGGAGCATTAGA+GGG + chr1.2:67596100-67596119 None:intergenic 45.0%
!! GTGATTCGGTTTCTCAATGC+TGG - chr1.2:67596303-67596322 MS.gene050216:intron 45.0%
!! TTTTTCAGACTCACTCGCCA+GGG + chr1.2:67597248-67597267 None:intergenic 45.0%
!!! TTTTTTCAGACTCACTCGCC+AGG + chr1.2:67597249-67597268 None:intergenic 45.0%
ACACTCCAAATGTGCAGTGG+TGG - chr1.2:67595907-67595926 MS.gene050216:intron 50.0%
CACTCCAAATGTGCAGTGGT+GGG - chr1.2:67595908-67595927 MS.gene050216:intron 50.0%
CTCCAGTGTGATCACCAAGA+AGG + chr1.2:67597607-67597626 None:intergenic 50.0%
GAGCCTGTTCACGAACGATT+CGG - chr1.2:67597524-67597543 MS.gene050216:intron 50.0%
GGAGACTTGGGAATGTCTGA+TGG - chr1.2:67597623-67597642 MS.gene050216:CDS 50.0%
GGTGATCACACTGGAGACTT+GGG - chr1.2:67597611-67597630 MS.gene050216:CDS 50.0%
GTCACACTCCAAATGTGCAG+TGG - chr1.2:67595904-67595923 MS.gene050216:intron 50.0%
TCACCGAATCGTTCGTGAAC+AGG + chr1.2:67597530-67597549 None:intergenic 50.0%
TCAGAATTGACGCTGGTGGT+GGG - chr1.2:67595463-67595482 MS.gene050216:CDS 50.0%
TGGTGATCACACTGGAGACT+TGG - chr1.2:67597610-67597629 MS.gene050216:CDS 50.0%
TTCAGAATTGACGCTGGTGG+TGG - chr1.2:67595462-67595481 MS.gene050216:CDS 50.0%
! ACATGCAATAAGGGGGGTGT+AGG + chr1.2:67595364-67595383 None:intergenic 50.0%
! ATTTTCTCCTACCCTTGGGC+TGG - chr1.2:67596248-67596267 MS.gene050216:intron 50.0%
! CAATAAGGGGGGTGTAGGAA+AGG + chr1.2:67595359-67595378 None:intergenic 50.0%
! CCTTTTCTCTTCCAGCCCAA+GGG + chr1.2:67596262-67596281 None:intergenic 50.0%
! CTCCTTCTTGGTGATCACAC+TGG - chr1.2:67597602-67597621 MS.gene050216:CDS 50.0%
! TCCTTTTCTCTTCCAGCCCA+AGG + chr1.2:67596263-67596282 None:intergenic 50.0%
! TGTAGCGGGAAAAGTGACGT+GGG + chr1.2:67595283-67595302 None:intergenic 50.0%
! TTGAGATACTAGTGGGCGTG+AGG - chr1.2:67595791-67595810 MS.gene050216:intron 50.0%
!! AGTTGGTGGTGACGATGGAT+TGG + chr1.2:67595256-67595275 None:intergenic 50.0%
!! CGTGTAAGGGAGCATTAGAG+GGG + chr1.2:67596099-67596118 None:intergenic 50.0%
!! CTGAAGCTTTTGAGGACCAG+CGG + chr1.2:67595530-67595549 None:intergenic 50.0%
!! GACGTGTAAGGGAGCATTAG+AGG + chr1.2:67596101-67596120 None:intergenic 50.0%
!! GAGAAAGTTGGTGGTGACGA+TGG + chr1.2:67595261-67595280 None:intergenic 50.0%
!! TGACGATGGATTGGAGTTGG+AGG + chr1.2:67595247-67595266 None:intergenic 50.0%
!! TGGTGACGATGGATTGGAGT+TGG + chr1.2:67595250-67595269 None:intergenic 50.0%
ACTGCCCACCACTGCACATT+TGG + chr1.2:67595915-67595934 None:intergenic 55.0%
CGCTGGTCCTCAAAAGCTTC+AGG - chr1.2:67595528-67595547 MS.gene050216:CDS 55.0%
CTTGCTGCAATTCGTTCCGC+TGG - chr1.2:67595511-67595530 MS.gene050216:CDS 55.0%
GGGTTCAGAATTGACGCTGG+TGG - chr1.2:67595459-67595478 MS.gene050216:CDS 55.0%
GTGACGTGGGAGAAAGTTGG+TGG + chr1.2:67595270-67595289 None:intergenic 55.0%
TTCTCTTCCAGCCCAAGGGT+AGG + chr1.2:67596258-67596277 None:intergenic 55.0%
! AGATACTAGTGGGCGTGAGG+TGG - chr1.2:67595794-67595813 MS.gene050216:intron 55.0%
! CAGTCATGGCCTTTTGCAGC+AGG - chr1.2:67596167-67596186 MS.gene050216:intron 55.0%
! CCCTTGGGCTGGAAGAGAAA+AGG - chr1.2:67596259-67596278 MS.gene050216:intron 55.0%
! GTGTAGCGGGAAAAGTGACG+TGG + chr1.2:67595284-67595303 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 67595233 67597876 67595233 ID=MS.gene050216
chr1.2 mRNA 67595233 67597876 67595233 ID=MS.gene050216.t1;Parent=MS.gene050216
chr1.2 exon 67597791 67597876 67597791 ID=MS.gene050216.t1.exon1;Parent=MS.gene050216.t1
chr1.2 CDS 67597791 67597876 67597791 ID=cds.MS.gene050216.t1;Parent=MS.gene050216.t1
chr1.2 exon 67597560 67597707 67597560 ID=MS.gene050216.t1.exon2;Parent=MS.gene050216.t1
chr1.2 CDS 67597560 67597707 67597560 ID=cds.MS.gene050216.t1;Parent=MS.gene050216.t1
chr1.2 exon 67597038 67597098 67597038 ID=MS.gene050216.t1.exon3;Parent=MS.gene050216.t1
chr1.2 CDS 67597038 67597098 67597038 ID=cds.MS.gene050216.t1;Parent=MS.gene050216.t1
chr1.2 exon 67596807 67596943 67596807 ID=MS.gene050216.t1.exon4;Parent=MS.gene050216.t1
chr1.2 CDS 67596807 67596943 67596807 ID=cds.MS.gene050216.t1;Parent=MS.gene050216.t1
chr1.2 exon 67596466 67596588 67596466 ID=MS.gene050216.t1.exon5;Parent=MS.gene050216.t1
chr1.2 CDS 67596466 67596588 67596466 ID=cds.MS.gene050216.t1;Parent=MS.gene050216.t1
chr1.2 exon 67596261 67596317 67596261 ID=MS.gene050216.t1.exon6;Parent=MS.gene050216.t1
chr1.2 CDS 67596261 67596317 67596261 ID=cds.MS.gene050216.t1;Parent=MS.gene050216.t1
chr1.2 exon 67596048 67596141 67596048 ID=MS.gene050216.t1.exon7;Parent=MS.gene050216.t1
chr1.2 CDS 67596048 67596141 67596048 ID=cds.MS.gene050216.t1;Parent=MS.gene050216.t1
chr1.2 exon 67595428 67595635 67595428 ID=MS.gene050216.t1.exon8;Parent=MS.gene050216.t1
chr1.2 CDS 67595428 67595635 67595428 ID=cds.MS.gene050216.t1;Parent=MS.gene050216.t1
chr1.2 exon 67595233 67595293 67595233 ID=MS.gene050216.t1.exon9;Parent=MS.gene050216.t1
chr1.2 CDS 67595233 67595293 67595233 ID=cds.MS.gene050216.t1;Parent=MS.gene050216.t1
Gene Sequence

>MS.gene050216

ATGAGCTATCGCCTCCAACTCCAATCCATCGTCACCACCAACTTTCTCCCACGTCACTTTTCCCGCTACACTTCTTCAACATCAAGGTTCCTTTTTCTTCTTCACCCCCTCTTCTCTTTTTTACCTTTCCTACACCCCCCTTATTGCATGTAATTTTTTTTCTTTTAAGGGTTTCGTTTTCTACATTTTGTTGTGGAAAACATTTGGAAATGGAGGATATCAAATTGGGTTCAGAATTGACGCTGGTGGTGGGTGATCCTGTTTTGCTCCACAACAAACTTGCTGCAATTCGTTCCGCTGGTCCTCAAAAGCTTCAGGTTTTTTCAAACCCCATTTCATTGATAATTGAGTTTCATGCAAATCAATGATTGCATTTTATTATGTGATCATTTCATTGTAATTGCATAACACAAAATTGGGTCTCATTTATAAAAAAAAAAAAAACGATTTTTTTAATTCATTACTACTAGTAGTTCAATTCAATATGTTTCCTGAGAAGTCCCACACTATATAATAATGCTTGAAAATGTGTTTACTTTACAAGCCACTTTTGTAAAATTGAGATACTAGTGGGCGTGAGGTGGTGTTTAAGAGTCTCATTTTTGGGAGGGTTGAATTATACCGAATATAAAAACTTAAGATGATATCAGAGATGATCCAAGATCAATCGAGTCACACTCCAAATGTGCAGTGGTGGGCAGTCTTCACCTTACAAATCCGTTTTGTAGGATTGAGAATTTCAACCCAAATTCTAAGATTTATATTTTCTTTTTTGTAGGTGATCGCTGATTTTGATGCCACATTAACAAAGTTTTGGGTTAATGGAACTCGCGGCCAAAGTATGTTACATGACTATTATATTTCCCCTCTAATGCTCCCTTACACGTCAAAAATTAGGAATATGTATTATATATCTAATCGAGTCATTTGTAGGCAGTCATGGCCTTTTGCAGCAGGATAATCCAGAATATGATGCCAAAAGGCAGCAGTTATATGAACATTACCATCCATTGGAATTTTCTCCTACCCTTGGGCTGGAAGAGAAAAGGAAACTCATGGTAGAGTGGTATGTGATTCGGTTTCTCAATGCTGGTCTACATATATAGGCTTTAACTTGAATAGTGTTGTATTCTGTTTTTTTTTTTTTTTATGGGTAGAAATCAAATTCAGTACCCCCAGAGTTTACTTACTAGTTACAACACTCACACATTTTGTGCACCAGAGGTACAGTGATATTCAATTGACATTAATCTTTGATGCTGTAACTTAAGATTTGGTGTATTATTAGGTGGGGAAAACGCATGCTCTTCTTATTGAAGGAGGACTTACATATGAATCAATAAAACAATCAGTTGCTAATGCTAACATAGCTTTTAGGGAAGGTGTTTCCGAGCTTTTTGAATTTTTGGAGGTATATATTCCATTTTTCTTTGACAAATATATGTTCTTACATGTTGATATGTTCATTTTATATCAGGAGAATTTATGAAATGTAATATATATGTGTGAAGATTCGATTGCTGACATTGGATACCATTTTCCATTTTGTTATTTTTCAGGAAAGAGACATTCCTGTATTAATATTCTCTGCAGGGCTTGCTGATATCATTGAAGAGGTGTGAAAAGTCTATTTTGTTTTATGTTGGCAAGGTTACTAAGAATTTCTCTTCATTTTCTTGTCGGTTATTGATTGTGCTTCTCAATATCTCTGTCTCGCTTTTTCCAATATTAACAGGTTCTAAGGCAGAAGCTTCGCAGATCCTTCAAAAATGTGAAGATAGTATCCAACAGGATGGTATTTAACAATGGCCAACTTGTATCTTTTAAAGGTGATTCTATGTTTCCAACTTTCATTTATTGTGTATTTGTTTGCTGGTCTTCTCAATGTTCATATGCAAATATATTTTTCAGAGGCCGGGGAATTACATAATAATTAATTGCCTTTAGGTTTCACTGGTAATACAGAAAAGCACACTTGTATTACAATGTTTGTTTATTTAATTATGTTTAAGCCCTGGCGAGTGAGTCTGAAAAAAAATAAACATTCTGTAATTTGATAGTGAAAAGTACATTTGTATTACAATGTAGTTCTGCAATTTGATATTGACTTCACATATAGCCTTGTTTTCTCCTATACAAAATCAGATTTTCGAAGCTTATTGCTGAGTTGAAAATAAACATTTCATATGCGTACTTAACAAGAACTAGTTCTTAATTTTTACTTCTCAATTTTGATCACAGGAAAATTGATTCACAGCTTAAATAAAAATGAGCATGCTCTTGATATGGCTGAGCCTGTTCACGAACGATTCGGTGATATTGATGGTCCAACTGATGACAATGACTTGCTCAAGAAGAGAACCAATGTTCTCCTTCTTGGTGATCACACTGGAGACTTGGGAATGTCTGATGGTTTAAATTACGATACTCGAATTTCTGTGGGATTTTTGTAAGTAAAGCATTTGCCAGACTCTAATTGCTGTGATTTTGTTAAAGTTGAGCTCAATTAATGTCTATAAGGCATTTATGATTGTGACTTGATCCCTGACTTAATTTTTTTTCTGGTATTTTGAATTGTTGCAGGAACCACAACGTTGAGAACTCACTTAGCTGCTATCGAGAAGCTTTTGATGTTGTTTTAATG

Protein sequence

>MS.gene050216.t1

MSYRLQLQSIVTTNFLPRHFSRYTSSTSRVSFSTFCCGKHLEMEDIKLGSELTLVVGDPVLLHNKLAAIRSAGPQKLQVIADFDATLTKFWVNGTRGQSSHGLLQQDNPEYDAKRQQLYEHYHPLEFSPTLGLEEKRKLMVEWYVGKTHALLIEGGLTYESIKQSVANANIAFREGVSELFEFLEERDIPVLIFSAGLADIIEEVLRQKLRRSFKNVKIVSNRMVFNNGQLVSFKGKLIHSLNKNEHALDMAEPVHERFGDIDGPTDDNDLLKKRTNVLLLGDHTGDLGMSDGLNYDTRISVGFLNHNVENSLSCYREAFDVVLM