AlfalfaGEDB | MS.gene055776

M. sativa cultivar XinJiangDaYe / MS.gene055776

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055776.t1	XP_013465151.1	98.3	424	6	1	1	423	1	424	3.80E-239	837

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055776.t1	Q9SIV3	46.4	394	153	13	56	423	59	420	1.6e-76	288.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055776.t1	A0A072VC54	98.3	424	6	1	1	423	1	424	2.7e-239	837.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene055776.t1	TF	GARP-G2-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene055776	0.868878	4.71E-66	-1.69E-46
MS.gene049173	MS.gene055776	0.837838	4.10E-57	-1.69E-46
MS.gene049181	MS.gene055776	-0.802423	5.65E-49	-1.69E-46
MS.gene049217	MS.gene055776	0.808902	2.47E-50	-1.69E-46
MS.gene049222	MS.gene055776	0.856729	2.64E-62	-1.69E-46
MS.gene049232	MS.gene055776	0.874228	7.96E-68	-1.69E-46
MS.gene049259	MS.gene055776	-0.809907	1.50E-50	-1.69E-46
MS.gene049285	MS.gene055776	0.89233	1.75E-74	-1.69E-46
MS.gene049320	MS.gene055776	0.91306	9.52E-84	-1.69E-46
MS.gene04939	MS.gene055776	0.803142	4.02E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055776.t1	MTR_2g090675	98.349	424	6	1	1	423	1	424	0.0	855
MS.gene055776.t1	MTR_4g078810	60.899	445	126	18	1	421	1	421	5.77e-149	429
MS.gene055776.t1	MTR_5g014040	36.194	268	126	8	154	416	305	532	4.16e-41	153
MS.gene055776.t1	MTR_4g098870	32.479	351	180	15	91	421	274	587	9.56e-41	153
MS.gene055776.t1	MTR_4g098870	32.479	351	180	15	91	421	235	548	9.64e-41	152
MS.gene055776.t1	MTR_4g098870	32.479	351	180	15	91	421	255	568	1.22e-40	152
MS.gene055776.t1	MTR_5g014040	35.531	273	126	9	154	416	305	537	6.42e-39	147
MS.gene055776.t1	MTR_5g014040	35.531	273	126	9	154	416	265	497	9.20e-39	146
MS.gene055776.t1	MTR_4g098870	33.482	224	119	11	91	298	255	464	1.11e-26	112
MS.gene055776.t1	MTR_4g098870	33.482	224	119	11	91	298	235	444	1.18e-26	112

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055776.t1	AT2G20570	49.239	394	142	14	56	423	59	420	3.90e-94	290
MS.gene055776.t1	AT2G20570	47.317	410	142	15	56	423	59	436	5.59e-90	279
MS.gene055776.t1	AT5G44190	42.754	414	147	16	28	420	40	384	1.48e-73	235
MS.gene055776.t1	AT5G44190	41.796	323	113	13	28	329	40	308	1.25e-58	196
MS.gene055776.t1	AT2G20570	38.832	394	136	15	56	423	59	373	1.26e-50	175
MS.gene055776.t1	AT4G18020	32.812	384	194	12	60	421	183	524	1.68e-34	135
MS.gene055776.t1	AT4G18020	32.812	384	194	12	60	421	183	524	1.68e-34	135
MS.gene055776.t1	AT4G18020	32.812	384	194	12	60	421	183	524	1.68e-34	135
MS.gene055776.t1	AT4G18020	32.812	384	194	12	60	421	183	524	1.68e-34	135
MS.gene055776.t1	AT4G18020	32.812	384	194	12	60	421	183	524	1.68e-34	135

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Find 141 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGTGTACTGGTGGCA+TGG	0.584070	2.1:-10255948	None:intergenic
AAAGAGATATTGTGAATCAT+TGG	0.319597	2.1:+10255900	MS.gene055776:CDS
AAAGGTCTAAAATGGTGTAC+TGG	0.559020	2.1:-10255956	None:intergenic
AAATGGTGTACTGGTGGCAT+GGG	0.560870	2.1:-10255947	None:intergenic
AAGAGATATTGTGAATCATT+GGG	0.445666	2.1:+10255901	MS.gene055776:CDS
AAGCAGCAAGCTGGAGTCAA+AGG	0.486273	2.1:+10255840	MS.gene055776:CDS
AAGCATGGTGTTCCTGCAGT+TGG	0.575770	2.1:-10256999	None:intergenic
AATAGCAAATCTTGTAATGA+TGG	0.402167	2.1:+10254172	MS.gene055776:CDS
AATATATACTTGAAGGTGGC+TGG	0.504816	2.1:-10255471	None:intergenic
AATCAAAGAATAATCCTCAT+GGG	0.581361	2.1:+10254359	MS.gene055776:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAAAGAAAAATTACCGGA+TGG	-	chr2.1:10257374-10257393	None:intergenic	30.0%
ATCCAAGTCCTAAAATTCAA+AGG	+	chr2.1:10255149-10255168	MS.gene055776:intron	30.0%
ATGGCAATACCTTATGATTT+AGG	+	chr2.1:10254600-10254619	MS.gene055776:intron	30.0%
CAATCAAAGAATAATCCTCA+TGG	+	chr2.1:10254358-10254377	MS.gene055776:CDS	30.0%
CTCGAGACATAAAATTAGTT+AGG	+	chr2.1:10256479-10256498	MS.gene055776:intron	30.0%
GAATCGGATATAAATTCATC+AGG	+	chr2.1:10254145-10254164	MS.gene055776:CDS	30.0%
GATATATCTCATAACCTTGT+TGG	+	chr2.1:10254742-10254761	MS.gene055776:intron	30.0%
GATTATGTTACAAACTTGCA+AGG	+	chr2.1:10256652-10256671	MS.gene055776:intron	30.0%
GCTTCTTATAATTGCTTTGA+AGG	+	chr2.1:10257464-10257483	MS.gene055776:intron	30.0%
TAAAAGGAGAAAGACTTATG+TGG	+	chr2.1:10256219-10256238	MS.gene055776:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	10253911	10257989	10253911	ID=MS.gene055776
chr2.1	mRNA	10253911	10257989	10253911	ID=MS.gene055776.t1;Parent=MS.gene055776
chr2.1	exon	10253911	10254396	10253911	ID=MS.gene055776.t1.exon1;Parent=MS.gene055776.t1
chr2.1	CDS	10253911	10254396	10253911	ID=cds.MS.gene055776.t1;Parent=MS.gene055776.t1
chr2.1	exon	10255344	10255484	10255344	ID=MS.gene055776.t1.exon2;Parent=MS.gene055776.t1
chr2.1	CDS	10255344	10255484	10255344	ID=cds.MS.gene055776.t1;Parent=MS.gene055776.t1
chr2.1	exon	10255797	10256114	10255797	ID=MS.gene055776.t1.exon3;Parent=MS.gene055776.t1
chr2.1	CDS	10255797	10256114	10255797	ID=cds.MS.gene055776.t1;Parent=MS.gene055776.t1
chr2.1	exon	10256987	10257043	10256987	ID=MS.gene055776.t1.exon4;Parent=MS.gene055776.t1
chr2.1	CDS	10256987	10257043	10256987	ID=cds.MS.gene055776.t1;Parent=MS.gene055776.t1
chr2.1	exon	10257258	10257377	10257258	ID=MS.gene055776.t1.exon5;Parent=MS.gene055776.t1
chr2.1	CDS	10257258	10257377	10257258	ID=cds.MS.gene055776.t1;Parent=MS.gene055776.t1
chr2.1	exon	10257840	10257989	10257840	ID=MS.gene055776.t1.exon6;Parent=MS.gene055776.t1
chr2.1	CDS	10257840	10257989	10257840	ID=cds.MS.gene055776.t1;Parent=MS.gene055776.t1

Gene Sequence

>MS.gene055776

ATGCTAGCAGTAGCACCATTGAGTAGCATAAGAGATGAAAGCCAAAGAGAAATGGAGGAGAATTTATCAATTGAGACATGTGACTTTGCTGATCTTTCTGAAGGGAACTTATTGGAAAGCATCAATTTTGAATTTGATGATGATTTCTTCGTATGCTTCAACGACGGAGATGTGTTACCGGATCTTGAGATGGACCCGGAAATGCTTGCTGAATTCTCCCTCAGCAGCGGTGAGGAATCGGATATAAATTCATCAGGCGCAAATAGCAAATCTTGTAATGATGGGAATATGGTTAGTATTGAGAGAAAATTACAAGATGAAGAGAAAGTAGTTTCTTCTTCAGATTCTGGTTCGAGTCGTGTGGAAGAGATAATTAGCAAAAGAGATGAATCCGTTGTGCCGAATCCATTGCCTAAGGAAGGTGAGAAAGGAAGAAAATCATCATCTCAATCAAAGAATAATCCTCATGGGAAGAGAAAAGTGAAGGTGAGTTGCTATATATATAATTGCTATTTAATTTGGTATATGTTTGTTAATTAGTTACAAACCCTTAATTTTTTTTTTCTTTTCAAAAGACCCTTTGTTGATTGTTTATTATAAGAAATTGAACTTCTTAACCGAAGTTTACAACACTTACACAATCTGCGCAATAACCACTTGCGCTAGGTTTTTTCTCCTTCTTTGAGCACATGGCAATACCTTATGATTTAGGTAATATGAAGTTCATGTGAAGCTGAGATAACCTTGAATGATCTGTCGCTATCTTTATATTTAGTCTTATCAAGTTTTTGAATGCAAAAGAACTCACGGGTATACTGTAAGCAAGAGAGAGATATATCTCATAACCTTGTTGGAATAACTATTTTTGGTAGTTTTTTTTGTTGTAAATTAAGCTATTTTTAGAATAACTCCTTACAATTTTAGAGAGTTAATCACTCTCAACATATATTATACAATTTTGAAAATAGATTTTGTTGTAATTGCATGATGCAATAAATCTCAGCCAGTCGATCTAAATTAACGGACATATCATCTAACCCTGAAATTGATTGGTTAATCTAGACACTCTGATCTAGAATCAATGATCGAGAGCTAAGAATTATTTCTTAGGAGTTGTTTTTTTTTTCCTCTTGTGTGTTTGTTTGTTCCATGCATAATAGGTTAGAGTACCCCTTAGATTCACCATTCAAAAAATAGTGATCAAGATCTATTACTGCATGAACCACCAATAGTAGAAAATCCAAGTCCTAAAATTCAAAGGAATTTCTGACAACATACTTAAAAATCCTATTACATATCTAACTAACTAATGTCCCAGCACAAAATATATTCACACAATTTGACACTTTATTATTAAATTTGCCGGATTTGTACTTTATAGTATGATATAAATAATGATGTGTTTATGTTTGTTGTTGGGTTGTGTAAATTAGGTGGATTGGACCCCAGAATTGCACAGAAGATTCGTACAAGCAGTAGAGCAGCTAGGTGTGGATAAGGCTGTACCTTCAAGAATTTTGGAAATTATGGGAATTGACTGCCTCACCCGCCATAACATCGCCAGCCACCTTCAAGTATATATTCATTTTCATCCTCTCTTTAATTTCAAACCTCAATATACTGAAAAAAAAAGTGTTATTTTAAATCTATTTCTCTAGTAAATGATCGAGCTTGTTTTGATTTTCTTTTGATATTATTATACAAATTCACGTAAATTTAAGCATCTAATGGGAAAAAAATCTACGTAAATTAAATTGTTGGTTAGAGTTTAGATTTAAAACATAGATACATGAAAGAAAAATTTAAGTAAATTATAGTTGATTTATTTTAGCGAGGGAAGATTAAATTCTAAAATTAAATATTGAATTTTGAACGTATATATGCAGAAATATAGATCGCATAGGAAACATTTGTTAGCACGTGAAGCTGAAGCAGCAAGCTGGAGTCAAAGGAGGCAATTGTTTGGAACAAATAGAGGAGTTGGAGGAAAAAGAGATATTGTGAATCATTGGGTTGCACCAACCATGGGTTTCCCTCCCATGCCACCAGTACACCATTTTAGACCTTTACATGTATGGGGGCACCATCCCGTGGATCAGTCGTTTATGCATATGTGGCCTAAATATTTGCCTCACCAGCCACCGGCTAACTGGGCACCTGCGCGGCCGGCTCCACCTCCTAACGCTTCGTATTGGCATCAACGGGTAAGTAAATTAAGTTTCAAATGCATATCTCGAGTTGTTGAGCTGTAACGCCCAAAAGAGATCCAAAATTTTGATGATATATTGACAATTAACATTTTTATATATAAAAGGAGAAAGACTTATGTGGACCAGGACCACACAATTGGGTTTGGTCACACACATAGTTTTTTCTTTCTTTCTTTACTTTTTCCATTTTCTCTCTCTTCTCTCTTCTCTCTCTTCTCTCTCATTTCTTTGGTTGTGACCACACAATGGGGTTTGGTCCCTGGTCCACACAAGTATTTTCCATATAAAAGTCATTTTATTTGAGCTAGCAAACCCTAAGTTAATTGGATAGTAAACAAAAACTTAGTTTTTCTTTGGACTCGAGACATAAAATTAGTTAGGTCATACTTAATAACGGAGTCAAATTATAATCAATTAATTAAGCTTACTATATATAATGAGTCTGTACTCAAAATGTGGAACCACATTTAAATCTCTTCATTGTCAACAGCATAGAAGTTGTAGAGAGGATAAAAAGTTTAAGCTAGAAAAGATTATGTTACAAACTTGCAAGGACTCTCAAACATGATTAACATACTTTATATGCTTAGACTTAGCTTCACCAAAAGCTTGGATTCATATTCTCTCTCCTTTTGTATCACTAATGATCAAAATATAGCAGTTTAGGGTAAAAAGTTAAACAGTTAGTTTGAGATTTTTTTTTTCTTGAGCTGTTATATTTCATCAGCAGAAAAAACAAGTTATCTTAATTACTTTTTTTGACAAAAAGTTATCTTAGTTAGTTAAAACAGCATAGAAAATGACCAATCTCCTAATTCCCTATTTCATTTTATTTGTCTAAATAGTTTCTTTCTTTTTTTGTGTAGGCTCCAAATGCACCAACTGCAGGAACACCATGCTTTCCACAGCCTCTGACAACAACGGTAACTATTCACGTTACTCTTTTGTATTTACTAGAGTTGTCTTCTACTTCCAAATTTGGATTCTTATGTGAATTTACTTACACTACAAACAATGTCATTTTTATTACTCACAAAAGTCATGCATTATTTAACTTATTCATTTTTTTTTTTGTTACAATTATTTAACTTATTCATATTATTGAGGAAATTAATTCATAAATACTATAAAATGCAGAGATTTGGCTCTCCAACCGTTCCGGGCATTCCACCACCCCATGCCATGTACCAATTAGATCCCGGTGTTGTCGTCCCCGCCGGTCAACCATCTCCTCAGCCTCTCTTAGACTTCCATCCGGTAATTTTTCTTTTCTTTTATCTTGTAAATTTTTTAGAAAAACTATTCTTTATAATCTATGAAAAAACTATTAAATTTTATTTTTGGCTTCTTATAATTGCTTTGAAGGGAAAAAAAAAACTAATTTTTTTAATGGAAAACACTATTTTCAAATAATGTTTTAGGATCAGAATGACAATTTTTTTATTATGATTTAGTCTAATTATTTCTTCCATCCCGTCATTTTCTTGCTTGTCTCTCTCCATCCTCCTCTCTCTTTCTCCAAAACACACAGCATGAATTCACAACGCATTATTGTTCGTCCGTGTCTATAAATACAACCTTTTATTTTGTTGTTTTTCGTATCTTTCTTACCAGCAGTTTATTTCACGTTTTGATATTGTAACTTAGTCAAAAAAATTTAAGAGAATAATATTAAAATATTGCATGCTTGATGTGTACGTTATATTTTTGTTTTAACAGTCAAAGGAGAGCATCGACGCAGCTATTAGTGATGTATTATCAAAACCATATTTACCATTGCCTCTTGGCCTTAAAGCTCCAGCACTTGAAGGTGTAATGGGTGAATTACAGAAACAAGGAATTCCAAATATTCCACCCTCTTGTGCTTGA

Protein sequence

>MS.gene055776.t1

MLAVAPLSSIRDESQREMEENLSIETCDFADLSEGNLLESINFEFDDDFFVCFNDGDVLPDLEMDPEMLAEFSLSSGEESDINSSGANSKSCNDGNMVSIERKLQDEEKVVSSSDSGSSRVEEIISKRDESVVPNPLPKEGEKGRKSSSQSKNNPHGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWSQRRQLFGTNRGVGGKRDIVNHWVAPTMGFPPMPPVHHFRPLHVWGHHPVDQSFMHMWPKYLPHQPPANWAPARPAPPPNASYWHQRAPNAPTAGTPCFPQPLTTTRFGSPTVPGIPPPHAMYQLDPGVVVPAGQPSPQPLLDFHPSKESIDAAISDVLSKPYLPLPLGLKAPALEGVMGELQKQGIPNIPPSCA