AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055776


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055776.t1 MTR_2g090675 98.349 424 6 1 1 423 1 424 0.0 855
MS.gene055776.t1 MTR_4g078810 60.899 445 126 18 1 421 1 421 5.77e-149 429
MS.gene055776.t1 MTR_5g014040 36.194 268 126 8 154 416 305 532 4.16e-41 153
MS.gene055776.t1 MTR_4g098870 32.479 351 180 15 91 421 274 587 9.56e-41 153
MS.gene055776.t1 MTR_4g098870 32.479 351 180 15 91 421 235 548 9.64e-41 152
MS.gene055776.t1 MTR_4g098870 32.479 351 180 15 91 421 255 568 1.22e-40 152
MS.gene055776.t1 MTR_5g014040 35.531 273 126 9 154 416 305 537 6.42e-39 147
MS.gene055776.t1 MTR_5g014040 35.531 273 126 9 154 416 265 497 9.20e-39 146
MS.gene055776.t1 MTR_4g098870 33.482 224 119 11 91 298 255 464 1.11e-26 112
MS.gene055776.t1 MTR_4g098870 33.482 224 119 11 91 298 235 444 1.18e-26 112
MS.gene055776.t1 MTR_3g106220 50.000 74 37 0 154 227 192 265 2.43e-17 84.7
MS.gene055776.t1 MTR_7g117705 34.146 164 94 7 155 309 186 344 3.06e-17 84.0
MS.gene055776.t1 MTR_2g450070 32.903 155 93 4 155 301 208 359 4.69e-17 84.0
MS.gene055776.t1 MTR_2g450070 32.903 155 93 4 155 301 208 359 5.64e-17 83.6
MS.gene055776.t1 MTR_1g032570 56.061 66 29 0 153 218 124 189 2.48e-16 81.3
MS.gene055776.t1 MTR_1g032570 56.061 66 29 0 153 218 193 258 3.12e-16 81.3
MS.gene055776.t1 MTR_4g121020 58.333 60 25 0 159 218 110 169 3.81e-16 80.9
MS.gene055776.t1 MTR_4g121020 45.977 87 45 1 159 243 214 300 4.04e-16 80.9
MS.gene055776.t1 MTR_4g121020 45.977 87 45 1 159 243 214 300 4.19e-16 80.9
MS.gene055776.t1 MTR_4g021760 39.362 94 54 2 124 216 134 225 1.50e-15 77.4
MS.gene055776.t1 MTR_1g013170 53.030 66 31 0 157 222 188 253 1.84e-15 78.6
MS.gene055776.t1 MTR_7g026400 48.193 83 42 1 149 231 146 227 3.78e-15 77.8
MS.gene055776.t1 MTR_7g089010 51.667 60 29 0 159 218 90 149 6.81e-15 75.5
MS.gene055776.t1 MTR_4g021790 43.678 87 44 1 130 216 143 224 2.90e-14 73.2
MS.gene055776.t1 MTR_3g102600 51.852 54 26 0 165 218 88 141 2.93e-14 71.2
MS.gene055776.t1 MTR_4g064730 43.038 79 43 1 159 237 130 206 4.65e-14 73.2
MS.gene055776.t1 MTR_2g034960 53.333 60 28 0 159 218 210 269 5.53e-14 74.3
MS.gene055776.t1 MTR_3g102600 51.852 54 26 0 165 218 137 190 5.82e-14 71.2
MS.gene055776.t1 MTR_1g013180 53.333 60 28 0 157 216 339 398 6.26e-14 74.3
MS.gene055776.t1 MTR_8g079940 46.377 69 37 0 159 227 208 276 1.37e-13 72.8
MS.gene055776.t1 MTR_3g102590 51.786 56 27 0 157 212 140 195 2.27e-13 69.7
MS.gene055776.t1 MTR_4g131600 33.333 153 62 5 106 218 107 259 5.87e-13 70.9
MS.gene055776.t1 MTR_3g086100 43.662 71 40 0 159 229 127 197 9.73e-13 70.1
MS.gene055776.t1 MTR_4g131580 34.247 146 81 5 109 242 139 281 1.05e-12 70.1
MS.gene055776.t1 MTR_4g021855 42.222 90 49 2 128 216 137 224 1.12e-12 68.9
MS.gene055776.t1 MTR_4g131570 50.909 55 27 0 158 212 201 255 1.15e-12 70.1
MS.gene055776.t1 MTR_4g086835 50.000 60 30 0 159 218 273 332 1.31e-12 69.3
MS.gene055776.t1 MTR_3g086100 43.662 71 40 0 159 229 198 268 1.35e-12 69.7
MS.gene055776.t1 MTR_3g102600 51.064 47 23 0 165 211 88 134 1.45e-12 65.1
MS.gene055776.t1 MTR_3g102600 51.064 47 23 0 165 211 137 183 4.77e-12 65.1
MS.gene055776.t1 MTR_6g032990 54.545 55 24 1 162 215 44 98 6.25e-12 67.4
MS.gene055776.t1 MTR_1g093080 50.000 60 29 1 158 216 209 268 9.64e-12 66.6
MS.gene055776.t1 MTR_4g021845 38.554 83 48 2 128 209 137 217 1.08e-11 64.7
MS.gene055776.t1 MTR_0450s0040 45.205 73 39 1 159 231 168 239 1.28e-11 65.9
MS.gene055776.t1 MTR_5g054300 35.922 103 58 2 122 216 153 255 1.45e-11 65.9
MS.gene055776.t1 MTR_2g086450 53.846 52 23 1 162 212 47 98 2.94e-11 65.1
MS.gene055776.t1 MTR_4g086835 49.180 61 30 1 159 218 273 333 4.13e-11 64.7
MS.gene055776.t1 MTR_5g017980 53.571 56 26 0 159 214 192 247 5.02e-11 63.9
MS.gene055776.t1 MTR_5g017980 53.571 56 26 0 159 214 191 246 5.31e-11 63.9
MS.gene055776.t1 MTR_3g102590 49.057 53 27 0 157 209 140 192 5.33e-11 62.0
MS.gene055776.t1 MTR_2g027860 53.704 54 24 1 160 212 49 102 7.05e-11 63.5
MS.gene055776.t1 MTR_5g041350 53.846 52 23 1 162 212 17 68 8.54e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055776.t1 AT2G20570 49.239 394 142 14 56 423 59 420 3.90e-94 290
MS.gene055776.t1 AT2G20570 47.317 410 142 15 56 423 59 436 5.59e-90 279
MS.gene055776.t1 AT5G44190 42.754 414 147 16 28 420 40 384 1.48e-73 235
MS.gene055776.t1 AT5G44190 41.796 323 113 13 28 329 40 308 1.25e-58 196
MS.gene055776.t1 AT2G20570 38.832 394 136 15 56 423 59 373 1.26e-50 175
MS.gene055776.t1 AT4G18020 32.812 384 194 12 60 421 183 524 1.68e-34 135
MS.gene055776.t1 AT4G18020 32.812 384 194 12 60 421 183 524 1.68e-34 135
MS.gene055776.t1 AT4G18020 32.812 384 194 12 60 421 183 524 1.68e-34 135
MS.gene055776.t1 AT4G18020 32.812 384 194 12 60 421 183 524 1.68e-34 135
MS.gene055776.t1 AT4G18020 32.812 384 194 12 60 421 183 524 1.68e-34 135
MS.gene055776.t1 AT4G18020 31.879 298 156 8 60 328 183 462 5.54e-31 124
MS.gene055776.t1 AT4G18020 31.879 298 156 8 60 328 183 462 5.54e-31 124
MS.gene055776.t1 AT4G18020 31.879 298 156 8 60 328 183 462 5.54e-31 124
MS.gene055776.t1 AT4G18020 31.879 298 156 8 60 328 183 462 5.54e-31 124
MS.gene055776.t1 AT4G18020 31.879 298 156 8 60 328 183 462 5.54e-31 124
MS.gene055776.t1 AT4G18020 31.879 298 156 8 60 328 183 462 5.54e-31 124
MS.gene055776.t1 AT5G59570 35.333 150 82 3 100 235 68 216 1.13e-18 86.3
MS.gene055776.t1 AT5G59570 35.333 150 82 3 100 235 68 216 1.13e-18 86.3
MS.gene055776.t1 AT5G58080 52.113 71 34 0 148 218 182 252 8.31e-17 83.2
MS.gene055776.t1 AT2G01760 54.688 64 29 0 155 218 130 193 7.97e-16 78.6
MS.gene055776.t1 AT4G31920 40.426 94 53 1 153 243 176 269 8.98e-16 79.7
MS.gene055776.t1 AT3G16857 46.250 80 43 0 139 218 146 225 1.07e-15 79.7
MS.gene055776.t1 AT3G16857 46.250 80 43 0 139 218 216 295 1.23e-15 79.7
MS.gene055776.t1 AT2G01760 54.688 64 29 0 155 218 195 258 1.52e-15 78.2
MS.gene055776.t1 AT3G16857 46.250 80 43 0 139 218 216 295 1.57e-15 79.3
MS.gene055776.t1 AT2G01760 54.688 64 29 0 155 218 223 286 1.78e-15 78.2
MS.gene055776.t1 AT3G10760 51.667 60 29 0 159 218 104 163 2.10e-15 77.4
MS.gene055776.t1 AT5G05090 51.667 60 29 0 159 218 80 139 2.56e-15 76.3
MS.gene055776.t1 AT2G25180 41.860 86 50 0 158 243 193 278 3.66e-15 77.8
MS.gene055776.t1 AT3G46640 32.258 155 83 4 84 231 76 215 4.37e-15 76.3
MS.gene055776.t1 AT3G46640 32.258 155 83 4 84 231 76 215 4.37e-15 76.3
MS.gene055776.t1 AT3G46640 32.258 155 83 4 84 231 76 215 1.22e-14 75.1
MS.gene055776.t1 AT5G07210 49.296 71 32 1 159 229 221 287 5.06e-14 74.3
MS.gene055776.t1 AT2G40970 50.877 57 28 0 162 218 107 163 5.10e-14 72.0
MS.gene055776.t1 AT5G07210 49.296 71 32 1 159 229 229 295 5.30e-14 74.3
MS.gene055776.t1 AT1G68670 36.508 126 68 4 137 260 193 308 1.21e-12 69.3
MS.gene055776.t1 AT1G13300 39.796 98 55 3 120 216 144 238 2.30e-12 68.2
MS.gene055776.t1 AT4G28610 46.377 69 36 1 148 215 213 281 3.43e-12 68.2
MS.gene055776.t1 AT2G03500 47.887 71 32 2 147 216 224 290 5.34e-12 67.8
MS.gene055776.t1 AT3G04030 55.556 54 23 1 160 212 45 98 6.14e-12 67.4
MS.gene055776.t1 AT2G27070 49.180 61 31 0 159 219 224 284 6.59e-12 67.8
MS.gene055776.t1 AT3G04030 55.769 52 22 1 162 212 47 98 7.01e-12 67.0
MS.gene055776.t1 AT5G18240 57.407 54 22 1 160 212 45 98 8.01e-12 67.0
MS.gene055776.t1 AT5G18240 57.407 54 22 1 160 212 45 98 8.01e-12 67.0
MS.gene055776.t1 AT3G62670 42.353 85 44 2 137 216 188 272 8.58e-12 67.0
MS.gene055776.t1 AT5G18240 57.407 54 22 1 160 212 45 98 8.90e-12 67.0
MS.gene055776.t1 AT5G18240 57.407 54 22 1 160 212 45 98 9.55e-12 66.6
MS.gene055776.t1 AT5G18240 57.407 54 22 1 160 212 45 98 9.55e-12 66.6
MS.gene055776.t1 AT1G25550 44.118 68 37 1 150 216 199 266 2.42e-11 65.1
MS.gene055776.t1 AT1G67710 53.448 58 26 1 162 218 121 178 3.12e-11 65.5
MS.gene055776.t1 AT1G67710 53.448 58 26 1 162 218 130 187 3.21e-11 65.5
MS.gene055776.t1 AT2G01060 49.180 61 29 2 153 212 9 68 3.96e-11 63.9
MS.gene055776.t1 AT1G67710 53.448 58 26 1 162 218 195 252 4.15e-11 65.1
MS.gene055776.t1 AT3G04030 50.943 53 26 0 160 212 45 97 9.68e-11 63.5

Find 141 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTGTACCTTCAAGAATTT+TGG 0.101691 2.1:+10255409 MS.gene055776:CDS
TCTTTCTGAAGGGAACTTAT+TGG 0.187055 2.1:+10254003 MS.gene055776:CDS
CTTCAAGTGCTGGAGCTTTA+AGG 0.188281 2.1:-10257908 None:intergenic
CTCACCAGCCACCGGCTAAC+TGG 0.189665 2.1:+10256041 MS.gene055776:CDS
GCACAAGAGGGTGGAATATT+TGG 0.198256 2.1:-10257963 None:intergenic
ACGAATCTTCTGTGCAATTC+TGG 0.206442 2.1:-10255356 None:intergenic
GTAGTTTCTTCTTCAGATTC+TGG 0.217213 2.1:+10254238 MS.gene055776:CDS
GAGAATTCAGCAAGCATTTC+CGG 0.225150 2.1:-10254106 None:intergenic
CGACAACACCGGGATCTAAT+TGG 0.291081 2.1:-10257308 None:intergenic
AATTCTCCTCCATTTCTCTT+TGG 0.309622 2.1:-10253952 None:intergenic
GTTCCTGCAGTTGGTGCATT+TGG 0.315113 2.1:-10256990 None:intergenic
AAAGAGATATTGTGAATCAT+TGG 0.319597 2.1:+10255900 MS.gene055776:CDS
ATACATGTAAAGGTCTAAAA+TGG 0.320147 2.1:-10255964 None:intergenic
CCAAGAGGCAATGGTAAATA+TGG 0.325980 2.1:-10257885 None:intergenic
ATCTTGTAATGATGGGAATA+TGG 0.342028 2.1:+10254180 MS.gene055776:CDS
ATTTGGCTCTCCAACCGTTC+CGG 0.346150 2.1:+10257260 MS.gene055776:CDS
CTTCCTTTCTCACCTTCCTT+AGG 0.364182 2.1:-10254322 None:intergenic
CGAATCTTCTGTGCAATTCT+GGG 0.366108 2.1:-10255355 None:intergenic
TTTGGCTCTCCAACCGTTCC+GGG 0.371933 2.1:+10257261 MS.gene055776:CDS
TACTATAAAATGCAGAGATT+TGG 0.372430 2.1:+10257243 MS.gene055776:intron
GGCTGGTGAGGCAAATATTT+AGG 0.383747 2.1:-10256028 None:intergenic
CGCGCAGGTGCCCAGTTAGC+CGG 0.396067 2.1:-10256052 None:intergenic
AATAGCAAATCTTGTAATGA+TGG 0.402167 2.1:+10254172 MS.gene055776:CDS
GCATGGGGTGGTGGAATGCC+CGG 0.416738 2.1:-10257279 None:intergenic
GGAGGTGGAGCCGGCCGCGC+AGG 0.417257 2.1:-10256067 None:intergenic
TTCTCACCTTCCTTAGGCAA+TGG 0.418890 2.1:-10254316 None:intergenic
ATAATTTCCAAAATTCTTGA+AGG 0.422640 2.1:-10255416 None:intergenic
TGGTACATGGCATGGGGTGG+TGG 0.423225 2.1:-10257288 None:intergenic
CCAGCACTTGAAGGTGTAAT+GGG 0.424238 2.1:+10257918 MS.gene055776:CDS
TTTGGAACAAATAGAGGAGT+TGG 0.424569 2.1:+10255872 MS.gene055776:CDS
AGATGAAAGCCAAAGAGAAA+TGG 0.427037 2.1:+10253943 MS.gene055776:CDS
CCTCAGCAGCGGTGAGGAAT+CGG 0.431327 2.1:+10254129 MS.gene055776:CDS
AGAATTCAGCAAGCATTTCC+GGG 0.434761 2.1:-10254105 None:intergenic
TGAGGAGATGGTTGACCGGC+GGG 0.442250 2.1:-10257333 None:intergenic
CCATATTTACCATTGCCTCT+TGG 0.445286 2.1:+10257885 MS.gene055776:CDS
AGTCAAAGGAGGCAATTGTT+TGG 0.445411 2.1:+10255854 MS.gene055776:CDS
AAGAGATATTGTGAATCATT+GGG 0.445666 2.1:+10255901 MS.gene055776:CDS
CCTTCCTTAGGCAATGGATT+CGG 0.447175 2.1:-10254310 None:intergenic
TCCAGCACTTGAAGGTGTAA+TGG 0.450202 2.1:+10257917 MS.gene055776:CDS
TAACTGGGCACCTGCGCGGC+CGG 0.450504 2.1:+10256057 MS.gene055776:CDS
GAAGGTGGCTGGCGATGTTA+TGG 0.452271 2.1:-10255460 None:intergenic
AGAGCAGCTAGGTGTGGATA+AGG 0.452338 2.1:+10255388 MS.gene055776:CDS
CAATTGTTTGGAACAAATAG+AGG 0.452627 2.1:+10255866 MS.gene055776:CDS
ATCTAATTGGTACATGGCAT+GGG 0.454562 2.1:-10257295 None:intergenic
GTGCCCAGTTAGCCGGTGGC+TGG 0.461785 2.1:-10256045 None:intergenic
CCCATTACACCTTCAAGTGC+TGG 0.466502 2.1:-10257918 None:intergenic
CTTAAAGCTCCAGCACTTGA+AGG 0.470221 2.1:+10257909 MS.gene055776:CDS
CAACGACGGAGATGTGTTAC+CGG 0.474780 2.1:+10254069 MS.gene055776:CDS
ACCGTTGTTGTCAGAGGCTG+TGG 0.475841 2.1:-10257023 None:intergenic
AAGCAGCAAGCTGGAGTCAA+AGG 0.486273 2.1:+10255840 MS.gene055776:CDS
TCTAAGAGAGGCTGAGGAGA+TGG 0.487017 2.1:-10257345 None:intergenic
GGTGGAATGCCCGGAACGGT+TGG 0.487870 2.1:-10257270 None:intergenic
GTTGTGTAAATTAGGTGGAT+TGG 0.489509 2.1:+10255330 MS.gene055776:intron
TCACCAGCCACCGGCTAACT+GGG 0.490844 2.1:+10256042 MS.gene055776:CDS
CGCTTCGTATTGGCATCAAC+GGG 0.494965 2.1:+10256093 MS.gene055776:CDS
TCCGGGTCCATCTCAAGATC+CGG 0.498896 2.1:-10254088 None:intergenic
TGGCGATGTTATGGCGGGTG+AGG 0.501153 2.1:-10255451 None:intergenic
GAATCGGATATAAATTCATC+AGG 0.503029 2.1:+10254145 MS.gene055776:CDS
TGCATAAACGACTGATCCAC+GGG 0.503874 2.1:-10255998 None:intergenic
TCATCTCTTATGCTACTCAA+TGG 0.503989 2.1:-10253926 None:intergenic
CAATCAAAGAATAATCCTCA+TGG 0.504719 2.1:+10254358 MS.gene055776:CDS
AATATATACTTGAAGGTGGC+TGG 0.504816 2.1:-10255471 None:intergenic
GTGAAGCTGAAGCAGCAAGC+TGG 0.505371 2.1:+10255831 MS.gene055776:CDS
CAGTTAGCCGGTGGCTGGTG+AGG 0.505897 2.1:-10256040 None:intergenic
CATTGGGTTGCACCAACCAT+GGG 0.506502 2.1:+10255917 MS.gene055776:CDS
TGGTGTACTGGTGGCATGGG+AGG 0.508769 2.1:-10255944 None:intergenic
CCCGGTGTTGTCGTCCCCGC+CGG 0.509158 2.1:+10257318 MS.gene055776:CDS
CCGGCGGGGACGACAACACC+GGG 0.512001 2.1:-10257318 None:intergenic
TGGAAGTCTAAGAGAGGCTG+AGG 0.512815 2.1:-10257351 None:intergenic
TTGCCTAAGGAAGGTGAGAA+AGG 0.515531 2.1:+10254319 MS.gene055776:CDS
TGATGCCAATACGAAGCGTT+AGG 0.516711 2.1:-10256088 None:intergenic
CTCTCCTGTTCAAGCACAAG+AGG 0.517323 2.1:-10257976 None:intergenic
CGATTCCTCACCGCTGCTGA+GGG 0.520384 2.1:-10254128 None:intergenic
CACCTCCTAACGCTTCGTAT+TGG 0.524846 2.1:+10256083 MS.gene055776:CDS
GACTTTGCTGATCTTTCTGA+AGG 0.529725 2.1:+10253992 MS.gene055776:CDS
AGATTCTGGTTCGAGTCGTG+TGG 0.530001 2.1:+10254252 MS.gene055776:CDS
AGGCTGAGGAGATGGTTGAC+CGG 0.530628 2.1:-10257337 None:intergenic
TCATTGGGTTGCACCAACCA+TGG 0.531353 2.1:+10255916 MS.gene055776:CDS
GATCTAATTGGTACATGGCA+TGG 0.535864 2.1:-10257296 None:intergenic
GGAACAAATAGAGGAGTTGG+AGG 0.536832 2.1:+10255875 MS.gene055776:CDS
ATAGCAAATCTTGTAATGAT+GGG 0.538050 2.1:+10254173 MS.gene055776:CDS
GAAGCGTTAGGAGGTGGAGC+CGG 0.546304 2.1:-10256076 None:intergenic
TTCTTCGTATGCTTCAACGA+CGG 0.547987 2.1:+10254055 MS.gene055776:CDS
GTGGCTGGCGATGTTATGGC+GGG 0.549108 2.1:-10255456 None:intergenic
ATGGGAGGGAAACCCATGGT+TGG 0.554944 2.1:-10255929 None:intergenic
ACCGGCGGGGACGACAACAC+CGG 0.556465 2.1:-10257319 None:intergenic
AAAGGTCTAAAATGGTGTAC+TGG 0.559020 2.1:-10255956 None:intergenic
AAATGGTGTACTGGTGGCAT+GGG 0.560870 2.1:-10255947 None:intergenic
GCTTTAAGGCCAAGAGGCAA+TGG 0.562818 2.1:-10257894 None:intergenic
ATATTTGCCTCACCAGCCAC+CGG 0.564674 2.1:+10256033 MS.gene055776:CDS
CAATACGAAGCGTTAGGAGG+TGG 0.565122 2.1:-10256082 None:intergenic
GGTGGCTGGCGATGTTATGG+CGG 0.567885 2.1:-10255457 None:intergenic
CTGAGGAGATGGTTGACCGG+CGG 0.568454 2.1:-10257334 None:intergenic
GGTGTACTGGTGGCATGGGA+GGG 0.568499 2.1:-10255943 None:intergenic
GCTCCAAATGCACCAACTGC+AGG 0.571552 2.1:+10256987 MS.gene055776:CDS
CCGATTCCTCACCGCTGCTG+AGG 0.572056 2.1:-10254129 None:intergenic
TTTAGACCTTTACATGTATG+GGG 0.574340 2.1:+10255968 MS.gene055776:CDS
AAGCATGGTGTTCCTGCAGT+TGG 0.575770 2.1:-10256999 None:intergenic
ATGCATAAACGACTGATCCA+CGG 0.576558 2.1:-10255999 None:intergenic
GGGTGGTGGAATGCCCGGAA+CGG 0.578855 2.1:-10257274 None:intergenic
AATCAAAGAATAATCCTCAT+GGG 0.581361 2.1:+10254359 MS.gene055776:CDS
ACGCTTCGTATTGGCATCAA+CGG 0.582704 2.1:+10256092 MS.gene055776:CDS
ACCGGGATCTAATTGGTACA+TGG 0.582780 2.1:-10257301 None:intergenic
GCCATGTACCAATTAGATCC+CGG 0.583653 2.1:+10257300 MS.gene055776:CDS
AAAATGGTGTACTGGTGGCA+TGG 0.584070 2.1:-10255948 None:intergenic
CCGAATCCATTGCCTAAGGA+AGG 0.586652 2.1:+10254310 MS.gene055776:CDS
ATCAGTCGTTTATGCATATG+TGG 0.587048 2.1:+10256005 MS.gene055776:CDS
ACTTTGCTGATCTTTCTGAA+GGG 0.589658 2.1:+10253993 MS.gene055776:CDS
GTCAGAGGCTGTGGAAAGCA+TGG 0.590043 2.1:-10257014 None:intergenic
TGAAAGCCAAAGAGAAATGG+AGG 0.591450 2.1:+10253946 MS.gene055776:CDS
TGTGTTACCGGATCTTGAGA+TGG 0.596115 2.1:+10254081 MS.gene055776:CDS
AGCAGTAGAGCAGCTAGGTG+TGG 0.596354 2.1:+10255382 MS.gene055776:CDS
GGTCTAAAATGGTGTACTGG+TGG 0.597835 2.1:-10255953 None:intergenic
CCTGTTCAAGCACAAGAGGG+TGG 0.600264 2.1:-10257972 None:intergenic
ATAGTTACCGTTGTTGTCAG+AGG 0.601295 2.1:-10257029 None:intergenic
GCCTCTCTTAGACTTCCATC+CGG 0.604166 2.1:+10257356 MS.gene055776:CDS
AATTGGTACATGGCATGGGG+TGG 0.606215 2.1:-10257291 None:intergenic
TGTGCCGAATCCATTGCCTA+AGG 0.612555 2.1:+10254306 MS.gene055776:CDS
TGCCAATACGAAGCGTTAGG+AGG 0.617509 2.1:-10256085 None:intergenic
GAATCTTCTGTGCAATTCTG+GGG 0.619894 2.1:-10255354 None:intergenic
GCTGAATTCTCCCTCAGCAG+CGG 0.622418 2.1:+10254118 MS.gene055776:CDS
TCTCCTGTTCAAGCACAAGA+GGG 0.631508 2.1:-10257975 None:intergenic
GCAGGTGCCCAGTTAGCCGG+TGG 0.633297 2.1:-10256049 None:intergenic
CAGCAAGCTGGAGTCAAAGG+AGG 0.634073 2.1:+10255843 MS.gene055776:CDS
TCATGGGAAGAGAAAAGTGA+AGG 0.641795 2.1:+10254375 MS.gene055776:CDS
TGGCATGGGAGGGAAACCCA+TGG 0.641923 2.1:-10255933 None:intergenic
ATGGGTGAATTACAGAAACA+AGG 0.642979 2.1:+10257936 MS.gene055776:CDS
ACCGGATCTTGAGATGGACC+CGG 0.646579 2.1:+10254087 MS.gene055776:CDS
TCTAATTGGTACATGGCATG+GGG 0.646732 2.1:-10257294 None:intergenic
TTAGACCTTTACATGTATGG+GGG 0.649002 2.1:+10255969 MS.gene055776:CDS
AATGAATATATACTTGAAGG+TGG 0.660387 2.1:-10255475 None:intergenic
ATTCTCCCTCAGCAGCGGTG+AGG 0.665828 2.1:+10254123 MS.gene055776:CDS
TAAACGACTGATCCACGGGA+TGG 0.666201 2.1:-10255994 None:intergenic
TGCAGAAATATAGATCGCAT+AGG 0.669423 2.1:+10255792 MS.gene055776:intron
CGGCTAACTGGGCACCTGCG+CGG 0.670548 2.1:+10256053 MS.gene055776:CDS
ACCGGATGGAAGTCTAAGAG+AGG 0.673915 2.1:-10257357 None:intergenic
GTACAAGCAGTAGAGCAGCT+AGG 0.685057 2.1:+10255377 MS.gene055776:CDS
AGGCAATGGATTCGGCACAA+CGG 0.686412 2.1:-10254302 None:intergenic
GCTGGAGCTTTAAGGCCAAG+AGG 0.694599 2.1:-10257900 None:intergenic
GAGGAGATGGTTGACCGGCG+GGG 0.701590 2.1:-10257332 None:intergenic
TCCACAGCCTCTGACAACAA+CGG 0.702383 2.1:+10257022 MS.gene055776:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAAGAAAAAAAAAATTAA+GGG - chr2.1:10254461-10254480 None:intergenic 10.0%
!! TGAAAAGAAAAAAAAAATTA+AGG - chr2.1:10254462-10254481 None:intergenic 10.0%
!!! TATATAATTGCTATTTAATT+TGG + chr2.1:10254410-10254429 MS.gene055776:intron 10.0%
!! TAAAAGAAAAGAAAAATTAC+CGG - chr2.1:10257378-10257397 None:intergenic 15.0%
!! TAGACAAATAAAATGAAATA+GGG - chr2.1:10256941-10256960 None:intergenic 15.0%
!! TATAATAAACAATCAACAAA+GGG - chr2.1:10254490-10254509 None:intergenic 15.0%
!! TTAACTTATTCATATTATTG+AGG + chr2.1:10257205-10257224 MS.gene055776:intron 15.0%
!! TTAGACAAATAAAATGAAAT+AGG - chr2.1:10256942-10256961 None:intergenic 15.0%
!! TTATAATAAACAATCAACAA+AGG - chr2.1:10254491-10254510 None:intergenic 15.0%
!!! CAAATAAAATGACTTTTATA+TGG - chr2.1:10256403-10256422 None:intergenic 15.0%
!!! CTATTTTCAAATAATGTTTT+AGG + chr2.1:10257520-10257539 MS.gene055776:intron 15.0%
!!! TCAATATATCATCAAAATTT+TGG - chr2.1:10256180-10256199 None:intergenic 15.0%
!! ACGAAAAACAACAAAATAAA+AGG - chr2.1:10257701-10257720 None:intergenic 20.0%
!! ATAAAATGAAATAGGGAATT+AGG - chr2.1:10256934-10256953 None:intergenic 20.0%
!! ATAATTTCCAAAATTCTTGA+AGG - chr2.1:10255419-10255438 None:intergenic 20.0%
!! ATCTACGTAAATTAAATTGT+TGG + chr2.1:10255649-10255668 MS.gene055776:intron 20.0%
!! CACTTTATTATTAAATTTGC+CGG + chr2.1:10255254-10255273 MS.gene055776:intron 20.0%
!! GAAAATGAATATATACTTGA+AGG - chr2.1:10255481-10255500 None:intergenic 20.0%
!! TAGTTAGTTAGATATGTAAT+AGG - chr2.1:10255200-10255219 None:intergenic 20.0%
!! TTCATATTACCTAAATCATA+AGG - chr2.1:10254612-10254631 None:intergenic 20.0%
!! TTTACTATCCAATTAACTTA+GGG - chr2.1:10256436-10256455 None:intergenic 20.0%
!!! ACAAAAACTTAGTTTTTCTT+TGG + chr2.1:10256455-10256474 MS.gene055776:intron 20.0%
!!! ATTAACTCTCTAAAATTGTA+AGG - chr2.1:10254824-10254843 None:intergenic 20.0%
!!! ATTTTTGTTTTAACAGTCAA+AGG + chr2.1:10257824-10257843 MS.gene055776:intron 20.0%
!!! CTTTTTTTTTCAGTATATTG+AGG - chr2.1:10255524-10255543 None:intergenic 20.0%
!!! TCAAGAATTTTGGAAATTAT+GGG + chr2.1:10255419-10255438 MS.gene055776:CDS 20.0%
!!! TTCAAGAATTTTGGAAATTA+TGG + chr2.1:10255418-10255437 MS.gene055776:CDS 20.0%
! AAAGAGATATTGTGAATCAT+TGG + chr2.1:10255900-10255919 MS.gene055776:CDS 25.0%
! AAAGGTTGTATTTATAGACA+CGG - chr2.1:10257683-10257702 None:intergenic 25.0%
! AAGAGATATTGTGAATCATT+GGG + chr2.1:10255901-10255920 MS.gene055776:CDS 25.0%
! AATAGCAAATCTTGTAATGA+TGG + chr2.1:10254172-10254191 MS.gene055776:CDS 25.0%
! AATCAAAGAATAATCCTCAT+GGG + chr2.1:10254359-10254378 MS.gene055776:CDS 25.0%
! AATGAATATATACTTGAAGG+TGG - chr2.1:10255478-10255497 None:intergenic 25.0%
! ACAATGAAGAGATTTAAATG+TGG - chr2.1:10256585-10256604 None:intergenic 25.0%
! ACGTAAATTTAAGCATCTAA+TGG + chr2.1:10255619-10255638 MS.gene055776:intron 25.0%
! AGATTAACCAATCAATTTCA+GGG - chr2.1:10254951-10254970 None:intergenic 25.0%
! AGTTAGGTCATACTTAATAA+CGG + chr2.1:10256495-10256514 MS.gene055776:intron 25.0%
! ATACATGTAAAGGTCTAAAA+TGG - chr2.1:10255967-10255986 None:intergenic 25.0%
! ATAGCAAATCTTGTAATGAT+GGG + chr2.1:10254173-10254192 MS.gene055776:CDS 25.0%
! CAAAAATAGTTATTCCAACA+AGG - chr2.1:10254759-10254778 None:intergenic 25.0%
! CATACTATAAAGTACAAATC+CGG - chr2.1:10255276-10255295 None:intergenic 25.0%
! CGTAAATTTAAGCATCTAAT+GGG + chr2.1:10255620-10255639 MS.gene055776:intron 25.0%
! GATCAAAATATAGCAGTTTA+GGG + chr2.1:10256766-10256785 MS.gene055776:intron 25.0%
! GTTTACTATCCAATTAACTT+AGG - chr2.1:10256437-10256456 None:intergenic 25.0%
! TACTATAAAATGCAGAGATT+TGG + chr2.1:10257243-10257262 MS.gene055776:intron 25.0%
! TAGATTAACCAATCAATTTC+AGG - chr2.1:10254952-10254971 None:intergenic 25.0%
! TGATCAAAATATAGCAGTTT+AGG + chr2.1:10256765-10256784 MS.gene055776:intron 25.0%
! TTATATGGAAAATACTTGTG+TGG - chr2.1:10256388-10256407 None:intergenic 25.0%
! TTCACATAAGAATCCAAATT+TGG - chr2.1:10257096-10257115 None:intergenic 25.0%
! TTGATCATTAGTGATACAAA+AGG - chr2.1:10256752-10256771 None:intergenic 25.0%
!! AGAGCTAAGAATTATTTCTT+AGG + chr2.1:10254999-10255018 MS.gene055776:intron 25.0%
!! ATTTTAGACCTTTACATGTA+TGG + chr2.1:10255966-10255985 MS.gene055776:CDS 25.0%
!! CAAAATTTTGGATCTCTTTT+GGG - chr2.1:10256168-10256187 None:intergenic 25.0%
!! CAGAAATTCCTTTGAATTTT+AGG - chr2.1:10255160-10255179 None:intergenic 25.0%
!! CTTCTTATAATTGCTTTGAA+GGG + chr2.1:10257465-10257484 MS.gene055776:intron 25.0%
!! CTTGTTGGAATAACTATTTT+TGG + chr2.1:10254757-10254776 MS.gene055776:intron 25.0%
!! TCAAAATTTTGGATCTCTTT+TGG - chr2.1:10256169-10256188 None:intergenic 25.0%
!! TTTTAGACCTTTACATGTAT+GGG + chr2.1:10255967-10255986 MS.gene055776:CDS 25.0%
!! TTTTTGAATGGTGAATCTAA+GGG - chr2.1:10255084-10255103 None:intergenic 25.0%
!!! ATAGTTGATTTATTTTAGCG+AGG + chr2.1:10255724-10255743 MS.gene055776:intron 25.0%
!!! ATGTGTTTATGTTTGTTGTT+GGG + chr2.1:10255308-10255327 MS.gene055776:intron 25.0%
!!! CTTGATCACTATTTTTTGAA+TGG - chr2.1:10255096-10255115 None:intergenic 25.0%
!!! GTTTCTTTCTTTTTTTGTGT+AGG + chr2.1:10256965-10256984 MS.gene055776:intron 25.0%
!!! TAGTTGATTTATTTTAGCGA+GGG + chr2.1:10255725-10255744 MS.gene055776:intron 25.0%
!!! TTTTTTGAATGGTGAATCTA+AGG - chr2.1:10255085-10255104 None:intergenic 25.0%
AGAAAAGAAAAATTACCGGA+TGG - chr2.1:10257374-10257393 None:intergenic 30.0%
ATCCAAGTCCTAAAATTCAA+AGG + chr2.1:10255149-10255168 MS.gene055776:intron 30.0%
ATGGCAATACCTTATGATTT+AGG + chr2.1:10254600-10254619 MS.gene055776:intron 30.0%
CAATCAAAGAATAATCCTCA+TGG + chr2.1:10254358-10254377 MS.gene055776:CDS 30.0%
CTCGAGACATAAAATTAGTT+AGG + chr2.1:10256479-10256498 MS.gene055776:intron 30.0%
GAATCGGATATAAATTCATC+AGG + chr2.1:10254145-10254164 MS.gene055776:CDS 30.0%
GATATATCTCATAACCTTGT+TGG + chr2.1:10254742-10254761 MS.gene055776:intron 30.0%
GATTATGTTACAAACTTGCA+AGG + chr2.1:10256652-10256671 MS.gene055776:intron 30.0%
GCTTCTTATAATTGCTTTGA+AGG + chr2.1:10257464-10257483 MS.gene055776:intron 30.0%
TAAAAGGAGAAAGACTTATG+TGG + chr2.1:10256219-10256238 MS.gene055776:intron 30.0%
TTGTCTTCTACTTCCAAATT+TGG + chr2.1:10257080-10257099 MS.gene055776:intron 30.0%
TTGTTTGTTCCATGCATAAT+AGG + chr2.1:10255049-10255068 MS.gene055776:intron 30.0%
TTTAGACCTTTACATGTATG+GGG + chr2.1:10255968-10255987 MS.gene055776:CDS 30.0%
TTTGAATGCAAAAGAACTCA+CGG + chr2.1:10254698-10254717 MS.gene055776:intron 30.0%
! AGAATATGAATCCAAGCTTT+TGG - chr2.1:10256725-10256744 None:intergenic 30.0%
! ATCTTGTAATGATGGGAATA+TGG + chr2.1:10254180-10254199 MS.gene055776:CDS 30.0%
! CAATTGTTTGGAACAAATAG+AGG + chr2.1:10255866-10255885 MS.gene055776:CDS 30.0%
! GTGTGAATATATTTTGTGCT+GGG - chr2.1:10255227-10255246 None:intergenic 30.0%
! TGAGGTTTGAAATTAAAGAG+AGG - chr2.1:10255506-10255525 None:intergenic 30.0%
! TGTGTAAGTGTTGTAAACTT+CGG - chr2.1:10254531-10254550 None:intergenic 30.0%
! TGTGTGAATATATTTTGTGC+TGG - chr2.1:10255228-10255247 None:intergenic 30.0%
! TTTTGAATGGTGAATCTAAG+GGG - chr2.1:10255083-10255102 None:intergenic 30.0%
!! GATGTGTTTATGTTTGTTGT+TGG + chr2.1:10255307-10255326 MS.gene055776:intron 30.0%
!!! TTCCTTTGAATTTTAGGACT+TGG - chr2.1:10255154-10255173 None:intergenic 30.0%
AAGAGAGAAGAGAGAGAAAA+TGG - chr2.1:10256307-10256326 None:intergenic 35.0%
AATATATACTTGAAGGTGGC+TGG - chr2.1:10255474-10255493 None:intergenic 35.0%
AATTCTCCTCCATTTCTCTT+TGG - chr2.1:10253955-10253974 None:intergenic 35.0%
ACTTTGCTGATCTTTCTGAA+GGG + chr2.1:10253993-10254012 MS.gene055776:CDS 35.0%
AGAGACAAGCAAGAAAATGA+CGG - chr2.1:10257597-10257616 None:intergenic 35.0%
AGATGAAAGCCAAAGAGAAA+TGG + chr2.1:10253943-10253962 MS.gene055776:CDS 35.0%
AGCCAGTCGATCTAAATTAA+CGG + chr2.1:10254912-10254931 MS.gene055776:intron 35.0%
ATCAGTCGTTTATGCATATG+TGG + chr2.1:10256005-10256024 MS.gene055776:CDS 35.0%
ATCTAATTGGTACATGGCAT+GGG - chr2.1:10257298-10257317 None:intergenic 35.0%
ATGAGTCTGTACTCAAAATG+TGG + chr2.1:10256557-10256576 MS.gene055776:intron 35.0%
ATGGGTGAATTACAGAAACA+AGG + chr2.1:10257936-10257955 MS.gene055776:CDS 35.0%
CAAAACGTGAAATAAACTGC+TGG - chr2.1:10257734-10257753 None:intergenic 35.0%
CATCTAACCCTGAAATTGAT+TGG + chr2.1:10254941-10254960 MS.gene055776:intron 35.0%
CTAGCAAACCCTAAGTTAAT+TGG + chr2.1:10256425-10256444 MS.gene055776:intron 35.0%
GAAATAGGGAATTAGGAGAT+TGG - chr2.1:10256927-10256946 None:intergenic 35.0%
GTACTCTAACCTATTATGCA+TGG - chr2.1:10255061-10255080 None:intergenic 35.0%
GTAGTTTCTTCTTCAGATTC+TGG + chr2.1:10254238-10254257 MS.gene055776:CDS 35.0%
GTTGTGTAAATTAGGTGGAT+TGG + chr2.1:10255330-10255349 MS.gene055776:intron 35.0%
TCATCTCTTATGCTACTCAA+TGG - chr2.1:10253929-10253948 None:intergenic 35.0%
TCTCTTCTCTCTCATTTCTT+TGG + chr2.1:10256330-10256349 MS.gene055776:intron 35.0%
TGCAGAAATATAGATCGCAT+AGG + chr2.1:10255792-10255811 MS.gene055776:intron 35.0%
TTAGACCTTTACATGTATGG+GGG + chr2.1:10255969-10255988 MS.gene055776:CDS 35.0%
TTGAATGCAAAAGAACTCAC+GGG + chr2.1:10254699-10254718 MS.gene055776:intron 35.0%
! AAAGGTCTAAAATGGTGTAC+TGG - chr2.1:10255959-10255978 None:intergenic 35.0%
! CTTGGATTTTCTACTATTGG+TGG - chr2.1:10255136-10255155 None:intergenic 35.0%
! GGACTTGGATTTTCTACTAT+TGG - chr2.1:10255139-10255158 None:intergenic 35.0%
! GTTGTTGGGTTGTGTAAATT+AGG + chr2.1:10255322-10255341 MS.gene055776:intron 35.0%
! TCTTTCTGAAGGGAACTTAT+TGG + chr2.1:10254003-10254022 MS.gene055776:CDS 35.0%
! TGAATTCATGCTGTGTGTTT+TGG - chr2.1:10257642-10257661 None:intergenic 35.0%
! TTTGGAACAAATAGAGGAGT+TGG + chr2.1:10255872-10255891 MS.gene055776:CDS 35.0%
ACAGCATAGAAGTTGTAGAG+AGG + chr2.1:10256607-10256626 MS.gene055776:intron 40.0%
ACGAATCTTCTGTGCAATTC+TGG - chr2.1:10255359-10255378 None:intergenic 40.0%
ACTTAGCTTCACCAAAAGCT+TGG + chr2.1:10256711-10256730 MS.gene055776:intron 40.0%
AGAATTCAGCAAGCATTTCC+GGG - chr2.1:10254108-10254127 None:intergenic 40.0%
AGATAGCGACAGATCATTCA+AGG - chr2.1:10254656-10254675 None:intergenic 40.0%
AGTCAAAGGAGGCAATTGTT+TGG + chr2.1:10255854-10255873 MS.gene055776:CDS 40.0%
ATAGTTACCGTTGTTGTCAG+AGG - chr2.1:10257032-10257051 None:intergenic 40.0%
ATGCATAAACGACTGATCCA+CGG - chr2.1:10256002-10256021 None:intergenic 40.0%
CCAAGAGGCAATGGTAAATA+TGG - chr2.1:10257888-10257907 None:intergenic 40.0%
CCATATTTACCATTGCCTCT+TGG + chr2.1:10257885-10257904 MS.gene055776:CDS 40.0%
CGAATCTTCTGTGCAATTCT+GGG - chr2.1:10255358-10255377 None:intergenic 40.0%
GAAAATACTTGTGTGGACCA+GGG - chr2.1:10256381-10256400 None:intergenic 40.0%
GAATCTTCTGTGCAATTCTG+GGG - chr2.1:10255357-10255376 None:intergenic 40.0%
GACTTTGCTGATCTTTCTGA+AGG + chr2.1:10253992-10254011 MS.gene055776:CDS 40.0%
GAGAATTCAGCAAGCATTTC+CGG - chr2.1:10254109-10254128 None:intergenic 40.0%
GAGACAAGCAAGAAAATGAC+GGG - chr2.1:10257596-10257615 None:intergenic 40.0%
GATCTAATTGGTACATGGCA+TGG - chr2.1:10257299-10257318 None:intergenic 40.0%
GGAACAAACAAACACACAAG+AGG - chr2.1:10255040-10255059 None:intergenic 40.0%
GTCCGTTAATTTAGATCGAC+TGG - chr2.1:10254917-10254936 None:intergenic 40.0%
TATTGCCATGTGCTCAAAGA+AGG - chr2.1:10254589-10254608 None:intergenic 40.0%
TCATGGGAAGAGAAAAGTGA+AGG + chr2.1:10254375-10254394 MS.gene055776:CDS 40.0%
TCTAATTGGTACATGGCATG+GGG - chr2.1:10257297-10257316 None:intergenic 40.0%
TGAAAGCCAAAGAGAAATGG+AGG + chr2.1:10253946-10253965 MS.gene055776:CDS 40.0%
TTCTTCGTATGCTTCAACGA+CGG + chr2.1:10254055-10254074 MS.gene055776:CDS 40.0%
TTTCTCCTTCTTTGAGCACA+TGG + chr2.1:10254581-10254600 MS.gene055776:intron 40.0%
TTTGGTTGTGACCACACAAT+GGG + chr2.1:10256348-10256367 MS.gene055776:intron 40.0%
! GGCTGTACCTTCAAGAATTT+TGG + chr2.1:10255409-10255428 MS.gene055776:CDS 40.0%
! GTTGGGTTGTGTAAATTAGG+TGG + chr2.1:10255325-10255344 MS.gene055776:intron 40.0%
!! TTCACTTTTCTCTTCCCATG+AGG - chr2.1:10254376-10254395 None:intergenic 40.0%
!!! TGTGTTTTGGAGAAAGAGAG+AGG - chr2.1:10257629-10257648 None:intergenic 40.0%
ACCGGGATCTAATTGGTACA+TGG - chr2.1:10257304-10257323 None:intergenic 45.0%
CTTCCTTTCTCACCTTCCTT+AGG - chr2.1:10254325-10254344 None:intergenic 45.0%
CTTTGGTTGTGACCACACAA+TGG + chr2.1:10256347-10256366 MS.gene055776:intron 45.0%
GAGAAAAAACCTAGCGCAAG+TGG - chr2.1:10254567-10254586 None:intergenic 45.0%
GAGAAAGACTTATGTGGACC+AGG + chr2.1:10256225-10256244 MS.gene055776:intron 45.0%
GCACAAGAGGGTGGAATATT+TGG - chr2.1:10257966-10257985 None:intergenic 45.0%
GCCATGTACCAATTAGATCC+CGG + chr2.1:10257300-10257319 MS.gene055776:CDS 45.0%
GGAAAATACTTGTGTGGACC+AGG - chr2.1:10256382-10256401 None:intergenic 45.0%
GGAACAAATAGAGGAGTTGG+AGG + chr2.1:10255875-10255894 MS.gene055776:CDS 45.0%
GGCTGGTGAGGCAAATATTT+AGG - chr2.1:10256031-10256050 None:intergenic 45.0%
TGCATAAACGACTGATCCAC+GGG - chr2.1:10256001-10256020 None:intergenic 45.0%
TGTGACCAAACCCAATTGTG+TGG - chr2.1:10256252-10256271 None:intergenic 45.0%
TGTGTTACCGGATCTTGAGA+TGG + chr2.1:10254081-10254100 MS.gene055776:CDS 45.0%
TTCTCACCTTCCTTAGGCAA+TGG - chr2.1:10254319-10254338 None:intergenic 45.0%
TTGCCTAAGGAAGGTGAGAA+AGG + chr2.1:10254319-10254338 MS.gene055776:CDS 45.0%
TTGGTTGTGACCACACAATG+GGG + chr2.1:10256349-10256368 MS.gene055776:intron 45.0%
! AAAATGGTGTACTGGTGGCA+TGG - chr2.1:10255951-10255970 None:intergenic 45.0%
! AAATGGTGTACTGGTGGCAT+GGG - chr2.1:10255950-10255969 None:intergenic 45.0%
! ACGCTTCGTATTGGCATCAA+CGG + chr2.1:10256092-10256111 MS.gene055776:CDS 45.0%
! CAAGCAAGAAAATGACGGGA+TGG - chr2.1:10257592-10257611 None:intergenic 45.0%
! CCAGCACTTGAAGGTGTAAT+GGG + chr2.1:10257918-10257937 MS.gene055776:CDS 45.0%
! CCTTCCTTAGGCAATGGATT+CGG - chr2.1:10254313-10254332 None:intergenic 45.0%
! GGTCTAAAATGGTGTACTGG+TGG - chr2.1:10255956-10255975 None:intergenic 45.0%
! TCCAGCACTTGAAGGTGTAA+TGG + chr2.1:10257917-10257936 MS.gene055776:CDS 45.0%
! TGATGCCAATACGAAGCGTT+AGG - chr2.1:10256091-10256110 None:intergenic 45.0%
!!! GTTTTGGAGAAAGAGAGAGG+AGG - chr2.1:10257626-10257645 None:intergenic 45.0%
!!! AAAAAAACTAATTTTTTTAA+TGG + chr2.1:10257491-10257510 MS.gene055776:intron 5.0%
!!! AAACTATTAAATTTTATTTT+TGG + chr2.1:10257442-10257461 MS.gene055776:intron 5.0%
!!! TTAACATTTTTATATATAAA+AGG + chr2.1:10256203-10256222 MS.gene055776:intron 5.0%
AAGCAGCAAGCTGGAGTCAA+AGG + chr2.1:10255840-10255859 MS.gene055776:CDS 50.0%
AAGCATGGTGTTCCTGCAGT+TGG - chr2.1:10257002-10257021 None:intergenic 50.0%
AATTGGTACATGGCATGGGG+TGG - chr2.1:10257294-10257313 None:intergenic 50.0%
ACCGGATGGAAGTCTAAGAG+AGG - chr2.1:10257360-10257379 None:intergenic 50.0%
AGAGCAGCTAGGTGTGGATA+AGG + chr2.1:10255388-10255407 MS.gene055776:CDS 50.0%
ATATTTGCCTCACCAGCCAC+CGG + chr2.1:10256033-10256052 MS.gene055776:CDS 50.0%
CAAACCCAATTGTGTGGTCC+TGG - chr2.1:10256246-10256265 None:intergenic 50.0%
CAACGACGGAGATGTGTTAC+CGG + chr2.1:10254069-10254088 MS.gene055776:CDS 50.0%
CACCTCCTAACGCTTCGTAT+TGG + chr2.1:10256083-10256102 MS.gene055776:CDS 50.0%
CAGGACCACACAATTGGGTT+TGG + chr2.1:10256244-10256263 MS.gene055776:intron 50.0%
CCCATTACACCTTCAAGTGC+TGG - chr2.1:10257921-10257940 None:intergenic 50.0%
CCGAATCCATTGCCTAAGGA+AGG + chr2.1:10254310-10254329 MS.gene055776:CDS 50.0%
CGACAACACCGGGATCTAAT+TGG - chr2.1:10257311-10257330 None:intergenic 50.0%
GCCTCTCTTAGACTTCCATC+CGG + chr2.1:10257356-10257375 MS.gene055776:CDS 50.0%
GTACAAGCAGTAGAGCAGCT+AGG + chr2.1:10255377-10255396 MS.gene055776:CDS 50.0%
TAAACGACTGATCCACGGGA+TGG - chr2.1:10255997-10256016 None:intergenic 50.0%
TCCACAGCCTCTGACAACAA+CGG + chr2.1:10257022-10257041 MS.gene055776:CDS 50.0%
TCTAAGAGAGGCTGAGGAGA+TGG - chr2.1:10257348-10257367 None:intergenic 50.0%
TGGAAGTCTAAGAGAGGCTG+AGG - chr2.1:10257354-10257373 None:intergenic 50.0%
TGGACCAGGACCACACAATT+GGG + chr2.1:10256239-10256258 MS.gene055776:intron 50.0%
TGGAGAAAGAGAGAGGAGGA+TGG - chr2.1:10257622-10257641 None:intergenic 50.0%
TGGTGCCCCCATACATGTAA+AGG - chr2.1:10255977-10255996 None:intergenic 50.0%
TGTGACCACACAATGGGGTT+TGG + chr2.1:10256354-10256373 MS.gene055776:intron 50.0%
TGTGCCGAATCCATTGCCTA+AGG + chr2.1:10254306-10254325 MS.gene055776:CDS 50.0%
! AGGCAATGGATTCGGCACAA+CGG - chr2.1:10254305-10254324 None:intergenic 50.0%
! CAATACGAAGCGTTAGGAGG+TGG - chr2.1:10256085-10256104 None:intergenic 50.0%
! CATTGGGTTGCACCAACCAT+GGG + chr2.1:10255917-10255936 MS.gene055776:CDS 50.0%
! CGCTTCGTATTGGCATCAAC+GGG + chr2.1:10256093-10256112 MS.gene055776:CDS 50.0%
! GTTCCTGCAGTTGGTGCATT+TGG - chr2.1:10256993-10257012 None:intergenic 50.0%
! TCATTGGGTTGCACCAACCA+TGG + chr2.1:10255916-10255935 MS.gene055776:CDS 50.0%
! TGCCAATACGAAGCGTTAGG+AGG - chr2.1:10256088-10256107 None:intergenic 50.0%
!! AGATTCTGGTTCGAGTCGTG+TGG + chr2.1:10254252-10254271 MS.gene055776:CDS 50.0%
!! ATTTGGCTCTCCAACCGTTC+CGG + chr2.1:10257260-10257279 MS.gene055776:CDS 50.0%
ACCGGATCTTGAGATGGACC+CGG + chr2.1:10254087-10254106 MS.gene055776:CDS 55.0%
ACCGTTGTTGTCAGAGGCTG+TGG - chr2.1:10257026-10257045 None:intergenic 55.0%
AGCAGTAGAGCAGCTAGGTG+TGG + chr2.1:10255382-10255401 MS.gene055776:CDS 55.0%
AGGCTGAGGAGATGGTTGAC+CGG - chr2.1:10257340-10257359 None:intergenic 55.0%
AGGGACCAAACCCCATTGTG+TGG - chr2.1:10256362-10256381 None:intergenic 55.0%
ATGGGAGGGAAACCCATGGT+TGG - chr2.1:10255932-10255951 None:intergenic 55.0%
CAGCAAGCTGGAGTCAAAGG+AGG + chr2.1:10255843-10255862 MS.gene055776:CDS 55.0%
GAAGGTGGCTGGCGATGTTA+TGG - chr2.1:10255463-10255482 None:intergenic 55.0%
GCGCAATAACCACTTGCGCT+AGG + chr2.1:10254555-10254574 MS.gene055776:intron 55.0%
GCTCCAAATGCACCAACTGC+AGG + chr2.1:10256987-10257006 MS.gene055776:CDS 55.0%
GCTGAATTCTCCCTCAGCAG+CGG + chr2.1:10254118-10254137 MS.gene055776:CDS 55.0%
GTCAGAGGCTGTGGAAAGCA+TGG - chr2.1:10257017-10257036 None:intergenic 55.0%
GTGAAGCTGAAGCAGCAAGC+TGG + chr2.1:10255831-10255850 MS.gene055776:CDS 55.0%
GTGGACCAGGACCACACAAT+TGG + chr2.1:10256238-10256257 MS.gene055776:intron 55.0%
TCCGGGTCCATCTCAAGATC+CGG - chr2.1:10254091-10254110 None:intergenic 55.0%
! ACACAATGGGGTTTGGTCCC+TGG + chr2.1:10256361-10256380 MS.gene055776:intron 55.0%
!! TTTGGCTCTCCAACCGTTCC+GGG + chr2.1:10257261-10257280 MS.gene055776:CDS 55.0%
ATTCTCCCTCAGCAGCGGTG+AGG + chr2.1:10254123-10254142 MS.gene055776:CDS 60.0%
CCTCAGCAGCGGTGAGGAAT+CGG + chr2.1:10254129-10254148 MS.gene055776:CDS 60.0%
CGATTCCTCACCGCTGCTGA+GGG - chr2.1:10254131-10254150 None:intergenic 60.0%
CTGAGGAGATGGTTGACCGG+CGG - chr2.1:10257337-10257356 None:intergenic 60.0%
GGTGGCTGGCGATGTTATGG+CGG - chr2.1:10255460-10255479 None:intergenic 60.0%
GTGGCTGGCGATGTTATGGC+GGG - chr2.1:10255459-10255478 None:intergenic 60.0%
TGAGGAGATGGTTGACCGGC+GGG - chr2.1:10257336-10257355 None:intergenic 60.0%
TGGCATGGGAGGGAAACCCA+TGG - chr2.1:10255936-10255955 None:intergenic 60.0%
TGGTACATGGCATGGGGTGG+TGG - chr2.1:10257291-10257310 None:intergenic 60.0%
! GAAGCGTTAGGAGGTGGAGC+CGG - chr2.1:10256079-10256098 None:intergenic 60.0%
! GGTGTACTGGTGGCATGGGA+GGG - chr2.1:10255946-10255965 None:intergenic 60.0%
! TCACCAGCCACCGGCTAACT+GGG + chr2.1:10256042-10256061 MS.gene055776:CDS 60.0%
! TGGTGTACTGGTGGCATGGG+AGG - chr2.1:10255947-10255966 None:intergenic 60.0%
!! TGGCGATGTTATGGCGGGTG+AGG - chr2.1:10255454-10255473 None:intergenic 60.0%
CAGTTAGCCGGTGGCTGGTG+AGG - chr2.1:10256043-10256062 None:intergenic 65.0%
CCGATTCCTCACCGCTGCTG+AGG - chr2.1:10254132-10254151 None:intergenic 65.0%
GAGGAGATGGTTGACCGGCG+GGG - chr2.1:10257335-10257354 None:intergenic 65.0%
GGTGGAATGCCCGGAACGGT+TGG - chr2.1:10257273-10257292 None:intergenic 65.0%
! CTCACCAGCCACCGGCTAAC+TGG + chr2.1:10256041-10256060 MS.gene055776:CDS 65.0%
!! GCATGGGGTGGTGGAATGCC+CGG - chr2.1:10257282-10257301 None:intergenic 65.0%
!! GGGTGGTGGAATGCCCGGAA+CGG - chr2.1:10257277-10257296 None:intergenic 65.0%
!! TGTATGGGGGCACCATCCCG+TGG + chr2.1:10255982-10256001 MS.gene055776:CDS 65.0%
ACCGGCGGGGACGACAACAC+CGG - chr2.1:10257322-10257341 None:intergenic 70.0%
CGCGCAGGTGCCCAGTTAGC+CGG - chr2.1:10256055-10256074 None:intergenic 70.0%
CGGCTAACTGGGCACCTGCG+CGG + chr2.1:10256053-10256072 MS.gene055776:CDS 70.0%
GCAGGTGCCCAGTTAGCCGG+TGG - chr2.1:10256052-10256071 None:intergenic 70.0%
GTGCCCAGTTAGCCGGTGGC+TGG - chr2.1:10256048-10256067 None:intergenic 70.0%
TAACTGGGCACCTGCGCGGC+CGG + chr2.1:10256057-10256076 MS.gene055776:CDS 70.0%
CCGGCGGGGACGACAACACC+GGG - chr2.1:10257321-10257340 None:intergenic 75.0%
!! CCCGGTGTTGTCGTCCCCGC+CGG + chr2.1:10257318-10257337 MS.gene055776:CDS 75.0%
! GGAGGTGGAGCCGGCCGCGC+AGG - chr2.1:10256070-10256089 None:intergenic 85.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 10253911 10257989 10253911 ID=MS.gene055776
chr2.1 mRNA 10253911 10257989 10253911 ID=MS.gene055776.t1;Parent=MS.gene055776
chr2.1 exon 10253911 10254396 10253911 ID=MS.gene055776.t1.exon1;Parent=MS.gene055776.t1
chr2.1 CDS 10253911 10254396 10253911 ID=cds.MS.gene055776.t1;Parent=MS.gene055776.t1
chr2.1 exon 10255344 10255484 10255344 ID=MS.gene055776.t1.exon2;Parent=MS.gene055776.t1
chr2.1 CDS 10255344 10255484 10255344 ID=cds.MS.gene055776.t1;Parent=MS.gene055776.t1
chr2.1 exon 10255797 10256114 10255797 ID=MS.gene055776.t1.exon3;Parent=MS.gene055776.t1
chr2.1 CDS 10255797 10256114 10255797 ID=cds.MS.gene055776.t1;Parent=MS.gene055776.t1
chr2.1 exon 10256987 10257043 10256987 ID=MS.gene055776.t1.exon4;Parent=MS.gene055776.t1
chr2.1 CDS 10256987 10257043 10256987 ID=cds.MS.gene055776.t1;Parent=MS.gene055776.t1
chr2.1 exon 10257258 10257377 10257258 ID=MS.gene055776.t1.exon5;Parent=MS.gene055776.t1
chr2.1 CDS 10257258 10257377 10257258 ID=cds.MS.gene055776.t1;Parent=MS.gene055776.t1
chr2.1 exon 10257840 10257989 10257840 ID=MS.gene055776.t1.exon6;Parent=MS.gene055776.t1
chr2.1 CDS 10257840 10257989 10257840 ID=cds.MS.gene055776.t1;Parent=MS.gene055776.t1
Gene Sequence

>MS.gene055776

ATGCTAGCAGTAGCACCATTGAGTAGCATAAGAGATGAAAGCCAAAGAGAAATGGAGGAGAATTTATCAATTGAGACATGTGACTTTGCTGATCTTTCTGAAGGGAACTTATTGGAAAGCATCAATTTTGAATTTGATGATGATTTCTTCGTATGCTTCAACGACGGAGATGTGTTACCGGATCTTGAGATGGACCCGGAAATGCTTGCTGAATTCTCCCTCAGCAGCGGTGAGGAATCGGATATAAATTCATCAGGCGCAAATAGCAAATCTTGTAATGATGGGAATATGGTTAGTATTGAGAGAAAATTACAAGATGAAGAGAAAGTAGTTTCTTCTTCAGATTCTGGTTCGAGTCGTGTGGAAGAGATAATTAGCAAAAGAGATGAATCCGTTGTGCCGAATCCATTGCCTAAGGAAGGTGAGAAAGGAAGAAAATCATCATCTCAATCAAAGAATAATCCTCATGGGAAGAGAAAAGTGAAGGTGAGTTGCTATATATATAATTGCTATTTAATTTGGTATATGTTTGTTAATTAGTTACAAACCCTTAATTTTTTTTTTCTTTTCAAAAGACCCTTTGTTGATTGTTTATTATAAGAAATTGAACTTCTTAACCGAAGTTTACAACACTTACACAATCTGCGCAATAACCACTTGCGCTAGGTTTTTTCTCCTTCTTTGAGCACATGGCAATACCTTATGATTTAGGTAATATGAAGTTCATGTGAAGCTGAGATAACCTTGAATGATCTGTCGCTATCTTTATATTTAGTCTTATCAAGTTTTTGAATGCAAAAGAACTCACGGGTATACTGTAAGCAAGAGAGAGATATATCTCATAACCTTGTTGGAATAACTATTTTTGGTAGTTTTTTTTGTTGTAAATTAAGCTATTTTTAGAATAACTCCTTACAATTTTAGAGAGTTAATCACTCTCAACATATATTATACAATTTTGAAAATAGATTTTGTTGTAATTGCATGATGCAATAAATCTCAGCCAGTCGATCTAAATTAACGGACATATCATCTAACCCTGAAATTGATTGGTTAATCTAGACACTCTGATCTAGAATCAATGATCGAGAGCTAAGAATTATTTCTTAGGAGTTGTTTTTTTTTTCCTCTTGTGTGTTTGTTTGTTCCATGCATAATAGGTTAGAGTACCCCTTAGATTCACCATTCAAAAAATAGTGATCAAGATCTATTACTGCATGAACCACCAATAGTAGAAAATCCAAGTCCTAAAATTCAAAGGAATTTCTGACAACATACTTAAAAATCCTATTACATATCTAACTAACTAATGTCCCAGCACAAAATATATTCACACAATTTGACACTTTATTATTAAATTTGCCGGATTTGTACTTTATAGTATGATATAAATAATGATGTGTTTATGTTTGTTGTTGGGTTGTGTAAATTAGGTGGATTGGACCCCAGAATTGCACAGAAGATTCGTACAAGCAGTAGAGCAGCTAGGTGTGGATAAGGCTGTACCTTCAAGAATTTTGGAAATTATGGGAATTGACTGCCTCACCCGCCATAACATCGCCAGCCACCTTCAAGTATATATTCATTTTCATCCTCTCTTTAATTTCAAACCTCAATATACTGAAAAAAAAAGTGTTATTTTAAATCTATTTCTCTAGTAAATGATCGAGCTTGTTTTGATTTTCTTTTGATATTATTATACAAATTCACGTAAATTTAAGCATCTAATGGGAAAAAAATCTACGTAAATTAAATTGTTGGTTAGAGTTTAGATTTAAAACATAGATACATGAAAGAAAAATTTAAGTAAATTATAGTTGATTTATTTTAGCGAGGGAAGATTAAATTCTAAAATTAAATATTGAATTTTGAACGTATATATGCAGAAATATAGATCGCATAGGAAACATTTGTTAGCACGTGAAGCTGAAGCAGCAAGCTGGAGTCAAAGGAGGCAATTGTTTGGAACAAATAGAGGAGTTGGAGGAAAAAGAGATATTGTGAATCATTGGGTTGCACCAACCATGGGTTTCCCTCCCATGCCACCAGTACACCATTTTAGACCTTTACATGTATGGGGGCACCATCCCGTGGATCAGTCGTTTATGCATATGTGGCCTAAATATTTGCCTCACCAGCCACCGGCTAACTGGGCACCTGCGCGGCCGGCTCCACCTCCTAACGCTTCGTATTGGCATCAACGGGTAAGTAAATTAAGTTTCAAATGCATATCTCGAGTTGTTGAGCTGTAACGCCCAAAAGAGATCCAAAATTTTGATGATATATTGACAATTAACATTTTTATATATAAAAGGAGAAAGACTTATGTGGACCAGGACCACACAATTGGGTTTGGTCACACACATAGTTTTTTCTTTCTTTCTTTACTTTTTCCATTTTCTCTCTCTTCTCTCTTCTCTCTCTTCTCTCTCATTTCTTTGGTTGTGACCACACAATGGGGTTTGGTCCCTGGTCCACACAAGTATTTTCCATATAAAAGTCATTTTATTTGAGCTAGCAAACCCTAAGTTAATTGGATAGTAAACAAAAACTTAGTTTTTCTTTGGACTCGAGACATAAAATTAGTTAGGTCATACTTAATAACGGAGTCAAATTATAATCAATTAATTAAGCTTACTATATATAATGAGTCTGTACTCAAAATGTGGAACCACATTTAAATCTCTTCATTGTCAACAGCATAGAAGTTGTAGAGAGGATAAAAAGTTTAAGCTAGAAAAGATTATGTTACAAACTTGCAAGGACTCTCAAACATGATTAACATACTTTATATGCTTAGACTTAGCTTCACCAAAAGCTTGGATTCATATTCTCTCTCCTTTTGTATCACTAATGATCAAAATATAGCAGTTTAGGGTAAAAAGTTAAACAGTTAGTTTGAGATTTTTTTTTTCTTGAGCTGTTATATTTCATCAGCAGAAAAAACAAGTTATCTTAATTACTTTTTTTGACAAAAAGTTATCTTAGTTAGTTAAAACAGCATAGAAAATGACCAATCTCCTAATTCCCTATTTCATTTTATTTGTCTAAATAGTTTCTTTCTTTTTTTGTGTAGGCTCCAAATGCACCAACTGCAGGAACACCATGCTTTCCACAGCCTCTGACAACAACGGTAACTATTCACGTTACTCTTTTGTATTTACTAGAGTTGTCTTCTACTTCCAAATTTGGATTCTTATGTGAATTTACTTACACTACAAACAATGTCATTTTTATTACTCACAAAAGTCATGCATTATTTAACTTATTCATTTTTTTTTTTGTTACAATTATTTAACTTATTCATATTATTGAGGAAATTAATTCATAAATACTATAAAATGCAGAGATTTGGCTCTCCAACCGTTCCGGGCATTCCACCACCCCATGCCATGTACCAATTAGATCCCGGTGTTGTCGTCCCCGCCGGTCAACCATCTCCTCAGCCTCTCTTAGACTTCCATCCGGTAATTTTTCTTTTCTTTTATCTTGTAAATTTTTTAGAAAAACTATTCTTTATAATCTATGAAAAAACTATTAAATTTTATTTTTGGCTTCTTATAATTGCTTTGAAGGGAAAAAAAAAACTAATTTTTTTAATGGAAAACACTATTTTCAAATAATGTTTTAGGATCAGAATGACAATTTTTTTATTATGATTTAGTCTAATTATTTCTTCCATCCCGTCATTTTCTTGCTTGTCTCTCTCCATCCTCCTCTCTCTTTCTCCAAAACACACAGCATGAATTCACAACGCATTATTGTTCGTCCGTGTCTATAAATACAACCTTTTATTTTGTTGTTTTTCGTATCTTTCTTACCAGCAGTTTATTTCACGTTTTGATATTGTAACTTAGTCAAAAAAATTTAAGAGAATAATATTAAAATATTGCATGCTTGATGTGTACGTTATATTTTTGTTTTAACAGTCAAAGGAGAGCATCGACGCAGCTATTAGTGATGTATTATCAAAACCATATTTACCATTGCCTCTTGGCCTTAAAGCTCCAGCACTTGAAGGTGTAATGGGTGAATTACAGAAACAAGGAATTCCAAATATTCCACCCTCTTGTGCTTGA

Protein sequence

>MS.gene055776.t1

MLAVAPLSSIRDESQREMEENLSIETCDFADLSEGNLLESINFEFDDDFFVCFNDGDVLPDLEMDPEMLAEFSLSSGEESDINSSGANSKSCNDGNMVSIERKLQDEEKVVSSSDSGSSRVEEIISKRDESVVPNPLPKEGEKGRKSSSQSKNNPHGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWSQRRQLFGTNRGVGGKRDIVNHWVAPTMGFPPMPPVHHFRPLHVWGHHPVDQSFMHMWPKYLPHQPPANWAPARPAPPPNASYWHQRAPNAPTAGTPCFPQPLTTTRFGSPTVPGIPPPHAMYQLDPGVVVPAGQPSPQPLLDFHPSKESIDAAISDVLSKPYLPLPLGLKAPALEGVMGELQKQGIPNIPPSCA