Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83939.t1 | XP_024634947.1 | 93.4 | 396 | 25 | 1 | 1 | 395 | 1 | 396 | 1.20E-205 | 725.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83939.t1 | A0A1S2Z1G2 | 70.0 | 397 | 115 | 3 | 1 | 395 | 1 | 395 | 3.7e-151 | 544.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051613 | MS.gene83939 | 0.811854 | 5.68E-51 | -1.69E-46 |
| MS.gene052447 | MS.gene83939 | 0.831269 | 1.84E-55 | -1.69E-46 |
| MS.gene060134 | MS.gene83939 | 0.829028 | 6.47E-55 | -1.69E-46 |
| MS.gene060135 | MS.gene83939 | 0.814478 | 1.51E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83939.t1 | MTR_2g021870 | 92.208 | 77 | 6 | 0 | 336 | 412 | 1 | 77 | 4.45e-42 | 143 |
| MS.gene83939.t1 | MTR_4g035745 | 86.538 | 52 | 7 | 0 | 84 | 135 | 1 | 52 | 7.22e-27 | 102 |
| MS.gene83939.t1 | MTR_4g125750 | 48.810 | 84 | 43 | 0 | 283 | 366 | 114 | 197 | 5.56e-17 | 79.3 |
| MS.gene83939.t1 | MTR_5g061300 | 25.806 | 217 | 129 | 8 | 97 | 289 | 73 | 281 | 8.99e-13 | 69.3 |
| MS.gene83939.t1 | MTR_6g012560 | 53.125 | 64 | 23 | 1 | 337 | 393 | 109 | 172 | 1.83e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83939.t1 | AT1G40087 | 27.666 | 347 | 221 | 12 | 86 | 416 | 56 | 388 | 1.45e-23 | 102 |
| MS.gene83939.t1 | AT3G30200 | 25.589 | 297 | 198 | 11 | 105 | 397 | 193 | 470 | 3.68e-13 | 71.6 |
Find 79 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGATGAGGAGGCTAATA+TGG | 0.216857 | 5.4:+28992349 | MS.gene83939:CDS |
| CAACAAGAATGTTAGATATA+TGG | 0.241965 | 5.4:+28990409 | MS.gene83939:CDS |
| AATAATGAAGATAATGAAAA+TGG | 0.293353 | 5.4:+28992216 | MS.gene83939:CDS |
| CATATATCTAACATTCTTGT+TGG | 0.301930 | 5.4:-28990408 | None:intergenic |
| TCTCGCAATTCATCAGTTAT+TGG | 0.316205 | 5.4:-28990727 | None:intergenic |
| CCCAAAATTTATTGATGAAA+AGG | 0.332658 | 5.4:+28991080 | MS.gene83939:CDS |
| ACAATGGAAGGGTGATTTAA+AGG | 0.335770 | 5.4:+28990783 | MS.gene83939:CDS |
| ACAGTAGATGAAATTGTATC+TGG | 0.337066 | 5.4:+28990829 | MS.gene83939:CDS |
| ACGAAATCGTGCCAAGTATC+AGG | 0.338596 | 5.4:+28991029 | MS.gene83939:CDS |
| GTTGGACCTCTACGTCGTTT+AGG | 0.354697 | 5.4:-28990390 | None:intergenic |
| AATGTTAGATATATGGGAAT+TGG | 0.359232 | 5.4:+28990416 | MS.gene83939:CDS |
| AACAAGAATGTTAGATATAT+GGG | 0.370254 | 5.4:+28990410 | MS.gene83939:CDS |
| ATGACACTTTCTGTATGATT+AGG | 0.370466 | 5.4:-28990198 | None:intergenic |
| ATTGTTAAGTTGGATAACTA+TGG | 0.378651 | 5.4:+28990453 | MS.gene83939:CDS |
| GGACTCAATGGTGCAGAAAC+TGG | 0.382474 | 5.4:+28990168 | MS.gene83939:CDS |
| ATCGTGGGTTGGTTGAATAT+TGG | 0.383055 | 5.4:+28990890 | MS.gene83939:CDS |
| TCATTATCTTCATTATTGAT+TGG | 0.384406 | 5.4:-28992210 | None:intergenic |
| TCTTAGGTAGTATTGTTAGA+AGG | 0.387853 | 5.4:+28990514 | MS.gene83939:CDS |
| TGATTTCATCATTGTTAAGT+TGG | 0.388733 | 5.4:+28990443 | MS.gene83939:CDS |
| GAAGAAGGAAATTGAGTATT+GGG | 0.388826 | 5.4:+28990079 | MS.gene83939:CDS |
| AAGGGGCGTGTGCGATGTAT+AGG | 0.410197 | 5.4:+28991759 | MS.gene83939:CDS |
| GATAACTATGGACGACCAAT+TGG | 0.442054 | 5.4:+28990465 | MS.gene83939:CDS |
| TAACAATACTACCTAAGAAA+CGG | 0.448034 | 5.4:-28990509 | None:intergenic |
| CTTCATTATTGATTGGACTA+GGG | 0.456427 | 5.4:-28992203 | None:intergenic |
| GTATCAGGATGTCCATTGTA+TGG | 0.456827 | 5.4:+28991044 | MS.gene83939:CDS |
| AACAATACTACCTAAGAAAC+GGG | 0.459809 | 5.4:-28990508 | None:intergenic |
| TCTTCATTATTGATTGGACT+AGG | 0.459814 | 5.4:-28992204 | None:intergenic |
| CGAAGAAGGAAATTGAGTAT+TGG | 0.459979 | 5.4:+28990078 | MS.gene83939:CDS |
| CACCCATCAACATCAAAACT+TGG | 0.461904 | 5.4:+28990547 | MS.gene83939:CDS |
| AGCTTCTATGTCGGAAGGAA+TGG | 0.463619 | 5.4:-28990244 | None:intergenic |
| GCGTGATAGAGTTAAGACTA+TGG | 0.466626 | 5.4:+28991836 | MS.gene83939:CDS |
| AGTACAAGGAGCTGCAAAGA+AGG | 0.477092 | 5.4:+28991740 | MS.gene83939:CDS |
| ACAAGCAGGGTCCTATGTCT+TGG | 0.485224 | 5.4:+28991697 | MS.gene83939:CDS |
| GCCGTCCCTTCGTCACCAAT+TGG | 0.487817 | 5.4:-28990480 | None:intergenic |
| AAGGGTGATTTAAAGGCAGC+TGG | 0.488397 | 5.4:+28990790 | MS.gene83939:CDS |
| ACAATGGACATCCTGATACT+TGG | 0.493353 | 5.4:-28991040 | None:intergenic |
| GATAATACAAGCTGCTAGAC+AGG | 0.497499 | 5.4:+28991923 | MS.gene83939:CDS |
| AATGGTGCAGAAACTGGTTC+TGG | 0.500925 | 5.4:+28990174 | MS.gene83939:CDS |
| ATTTGTTGAATCTGAATTTG+TGG | 0.503119 | 5.4:-28990139 | None:intergenic |
| ACAAATGTGCAAGGACTCAA+TGG | 0.507954 | 5.4:+28990156 | MS.gene83939:CDS |
| TTCATTATTGATTGGACTAG+GGG | 0.510352 | 5.4:-28992202 | None:intergenic |
| AGCGATGCTGGAACAAATAG+AGG | 0.510557 | 5.4:+28990596 | MS.gene83939:CDS |
| CGCAATTCATCAGTTATTGG+AGG | 0.513443 | 5.4:-28990724 | None:intergenic |
| GAGCAGCAATGGCTCGAAGA+AGG | 0.515414 | 5.4:+28990064 | None:intergenic |
| GTACAAGGAGCTGCAAAGAA+GGG | 0.517138 | 5.4:+28991741 | MS.gene83939:CDS |
| TTGGACTAGGGGAATTCAAA+GGG | 0.520133 | 5.4:-28992191 | None:intergenic |
| ATTGGACTAGGGGAATTCAA+AGG | 0.524515 | 5.4:-28992192 | None:intergenic |
| CTAGGGGAATTCAAAGGGTT+AGG | 0.527124 | 5.4:-28992186 | None:intergenic |
| ATGTAAATATCTTGACGTCC+AGG | 0.530259 | 5.4:-28991203 | None:intergenic |
| TCAATCAACTCAAAACAAGC+AGG | 0.532194 | 5.4:+28991683 | MS.gene83939:CDS |
| TATCAGGATGTCCATTGTAT+GGG | 0.534129 | 5.4:+28991045 | MS.gene83939:CDS |
| GAATTGAGTTACGTGATGCT+AGG | 0.534756 | 5.4:+28990851 | MS.gene83939:CDS |
| AAGGGAAAAGGAGTGATGCC+TGG | 0.537898 | 5.4:+28991185 | MS.gene83939:CDS |
| CATCGAGAAAATAACAATGA+AGG | 0.539941 | 5.4:+28990102 | MS.gene83939:CDS |
| TCTTCAGCTTCTATGTCGGA+AGG | 0.543783 | 5.4:-28990249 | None:intergenic |
| GAAACTCGCACACGTAAAGA+TGG | 0.550872 | 5.4:+28991227 | MS.gene83939:CDS |
| AGTGAGATTCTACAGACTCA+TGG | 0.552321 | 5.4:-28990221 | None:intergenic |
| TTCTTCTTCAGCTTCTATGT+CGG | 0.560378 | 5.4:-28990253 | None:intergenic |
| ATTTCTTGTAGGTGAAGATG+AGG | 0.564889 | 5.4:+28992337 | MS.gene83939:intron |
| CGAAGCTCAATATCGTGGGT+TGG | 0.565385 | 5.4:+28990879 | MS.gene83939:CDS |
| TGAATCTGAATTTGTGGGAA+GGG | 0.575098 | 5.4:-28990133 | None:intergenic |
| GACGACCAATTGGTGACGAA+GGG | 0.579583 | 5.4:+28990475 | MS.gene83939:CDS |
| ACCAATTGGTGACGAAGGGA+CGG | 0.581959 | 5.4:+28990479 | MS.gene83939:CDS |
| GCAGGGTCCTATGTCTTGGA+AGG | 0.592209 | 5.4:+28991701 | MS.gene83939:CDS |
| TTTGTTGAATCTGAATTTGT+GGG | 0.594863 | 5.4:-28990138 | None:intergenic |
| ATGTCATCCTTCCAAGACAT+AGG | 0.596668 | 5.4:-28991708 | None:intergenic |
| GAAGAAGAACGTATTGTCGA+AGG | 0.600104 | 5.4:+28990270 | MS.gene83939:CDS |
| GGACGACCAATTGGTGACGA+AGG | 0.609775 | 5.4:+28990474 | MS.gene83939:CDS |
| TCAGATTCAACAAATGTGCA+AGG | 0.614371 | 5.4:+28990147 | MS.gene83939:CDS |
| TCTTGTAGGTGAAGATGAGG+AGG | 0.617773 | 5.4:+28992340 | MS.gene83939:intron |
| TTGACGAAGCTCAATATCGT+GGG | 0.624589 | 5.4:+28990875 | MS.gene83939:CDS |
| TTGAATCTGAATTTGTGGGA+AGG | 0.627288 | 5.4:-28990134 | None:intergenic |
| TACAAGGAGCTGCAAAGAAG+GGG | 0.632795 | 5.4:+28991742 | MS.gene83939:CDS |
| GATAGAGTTAAGACTATGGA+GGG | 0.632932 | 5.4:+28991840 | MS.gene83939:CDS |
| ATTGACGAAGCTCAATATCG+TGG | 0.636862 | 5.4:+28990874 | MS.gene83939:CDS |
| TGATAGAGTTAAGACTATGG+AGG | 0.640558 | 5.4:+28991839 | MS.gene83939:CDS |
| ATCAGGATGTCCATTGTATG+GGG | 0.646013 | 5.4:+28991046 | MS.gene83939:CDS |
| CAATCAACTCAAAACAAGCA+GGG | 0.651054 | 5.4:+28991684 | MS.gene83939:CDS |
| GAAGAACCTAAACGACGTAG+AGG | 0.676471 | 5.4:+28990384 | MS.gene83939:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATATTTTCTTTGTTTTTT+AGG | + | chr5.4:28992266-28992285 | MS.gene83939:intron | 10.0% |
| !! | AATAATGAAGATAATGAAAA+TGG | + | chr5.4:28992216-28992235 | MS.gene83939:CDS | 15.0% |
| !!! | TTGATTTTTGTATTTTTCAT+TGG | + | chr5.4:28991104-28991123 | MS.gene83939:intron | 15.0% |
| !! | AAAACAGAATTAAAAACAGT+TGG | - | chr5.4:28991616-28991635 | None:intergenic | 20.0% |
| !! | AACAAGAATGTTAGATATAT+GGG | + | chr5.4:28990410-28990429 | MS.gene83939:CDS | 20.0% |
| !! | ACCTAAATCTAAAAAATCAA+AGG | + | chr5.4:28991788-28991807 | MS.gene83939:CDS | 20.0% |
| !! | ACTAAAAAAACATAGTAATG+AGG | + | chr5.4:28991650-28991669 | MS.gene83939:CDS | 20.0% |
| !! | CAAATGAACAAAATAGAAAA+TGG | - | chr5.4:28990309-28990328 | None:intergenic | 20.0% |
| !! | TCATTATCTTCATTATTGAT+TGG | - | chr5.4:28992213-28992232 | None:intergenic | 20.0% |
| !!! | AACTGTTTTTAATTCTGTTT+TGG | + | chr5.4:28991615-28991634 | MS.gene83939:intron | 20.0% |
| !!! | AATCTGATTTGAATGAAAAA+TGG | + | chr5.4:28990758-28990777 | MS.gene83939:CDS | 20.0% |
| !!! | ACCTTTGATTTTTTAGATTT+AGG | - | chr5.4:28991792-28991811 | None:intergenic | 20.0% |
| !!! | ACCTTTTCATCAATAAATTT+TGG | - | chr5.4:28991084-28991103 | None:intergenic | 20.0% |
| !!! | ACTGTTTTTAATTCTGTTTT+GGG | + | chr5.4:28991616-28991635 | MS.gene83939:intron | 20.0% |
| !!! | CCTTTTCATCAATAAATTTT+GGG | - | chr5.4:28991083-28991102 | None:intergenic | 20.0% |
| !!! | CTTTTCTTTTTATTTCTTGT+AGG | + | chr5.4:28992326-28992345 | MS.gene83939:intron | 20.0% |
| !!! | TTTGGTTTTTAGATGAAAAA+GGG | + | chr5.4:28991167-28991186 | MS.gene83939:intron | 20.0% |
| !!! | TTTTCGATTTTATGTGATAT+AGG | + | chr5.4:28992143-28992162 | MS.gene83939:intron | 20.0% |
| ! | AAACCAAACAAACATGTTAT+AGG | - | chr5.4:28991155-28991174 | None:intergenic | 25.0% |
| ! | AAACCTATAACATGTTTGTT+TGG | + | chr5.4:28991149-28991168 | MS.gene83939:intron | 25.0% |
| ! | AATGTTAGATATATGGGAAT+TGG | + | chr5.4:28990416-28990435 | MS.gene83939:CDS | 25.0% |
| ! | ATACTTTCAAATGGTATAAC+AGG | - | chr5.4:28991351-28991370 | None:intergenic | 25.0% |
| ! | CAACAAGAATGTTAGATATA+TGG | + | chr5.4:28990409-28990428 | MS.gene83939:CDS | 25.0% |
| ! | CAAGATATCATACTTTCAAA+TGG | - | chr5.4:28991360-28991379 | None:intergenic | 25.0% |
| ! | CATATATCTAACATTCTTGT+TGG | - | chr5.4:28990411-28990430 | None:intergenic | 25.0% |
| ! | CCCAAAATTTATTGATGAAA+AGG | + | chr5.4:28991080-28991099 | MS.gene83939:CDS | 25.0% |
| ! | TAACAATACTACCTAAGAAA+CGG | - | chr5.4:28990512-28990531 | None:intergenic | 25.0% |
| ! | TACGTATAATATGTATGACT+TGG | - | chr5.4:28990940-28990959 | None:intergenic | 25.0% |
| ! | TGATTTCATCATTGTTAAGT+TGG | + | chr5.4:28990443-28990462 | MS.gene83939:CDS | 25.0% |
| ! | TTCTTGTAGTAACTATGATT+TGG | + | chr5.4:28991392-28991411 | MS.gene83939:intron | 25.0% |
| ! | TTTGTTGAATCTGAATTTGT+GGG | - | chr5.4:28990141-28990160 | None:intergenic | 25.0% |
| !! | ATTTGTTGAATCTGAATTTG+TGG | - | chr5.4:28990142-28990161 | None:intergenic | 25.0% |
| !! | TGGCTTGTAAAATATAGTTT+AGG | + | chr5.4:28991459-28991478 | MS.gene83939:intron | 25.0% |
| !! | TTGTAAGCATCTAACATTTT+TGG | + | chr5.4:28991282-28991301 | MS.gene83939:intron | 25.0% |
| !! | TTTTAGATGAAAAAGGGAAA+AGG | + | chr5.4:28991173-28991192 | MS.gene83939:intron | 25.0% |
| !!! | AAATCAAGAGTATTGCTAAA+TGG | - | chr5.4:28992102-28992121 | None:intergenic | 25.0% |
| !!! | ATCGCTTTTTTATTATCTGA+GGG | - | chr5.4:28990582-28990601 | None:intergenic | 25.0% |
| !!! | ATTGTTAAGTTGGATAACTA+TGG | + | chr5.4:28990453-28990472 | MS.gene83939:CDS | 25.0% |
| !!! | GACATATTTTCTAAAGTACA+AGG | + | chr5.4:28991726-28991745 | MS.gene83939:CDS | 25.0% |
| !!! | GTTTGGTTTTTAGATGAAAA+AGG | + | chr5.4:28991166-28991185 | MS.gene83939:intron | 25.0% |
| !!! | TTAATTCTGTTTTGGGTTTT+AGG | + | chr5.4:28991623-28991642 | MS.gene83939:intron | 25.0% |
| !!! | TTCATTGATTTAAGAGAACA+TGG | + | chr5.4:28991988-28992007 | MS.gene83939:intron | 25.0% |
| AAAAAACATAGTAATGAGGC+TGG | + | chr5.4:28991654-28991673 | MS.gene83939:CDS | 30.0% | |
| AACAATACTACCTAAGAAAC+GGG | - | chr5.4:28990511-28990530 | None:intergenic | 30.0% | |
| ACAGTAGATGAAATTGTATC+TGG | + | chr5.4:28990829-28990848 | MS.gene83939:CDS | 30.0% | |
| AGATAATAAAAAAGCGATGC+TGG | + | chr5.4:28990584-28990603 | MS.gene83939:CDS | 30.0% | |
| ATGACACTTTCTGTATGATT+AGG | - | chr5.4:28990201-28990220 | None:intergenic | 30.0% | |
| ATTAAAAACAGTTGGCAATC+AGG | - | chr5.4:28991608-28991627 | None:intergenic | 30.0% | |
| CATCGAGAAAATAACAATGA+AGG | + | chr5.4:28990102-28990121 | MS.gene83939:CDS | 30.0% | |
| GAAGAAGGAAATTGAGTATT+GGG | + | chr5.4:28990079-28990098 | MS.gene83939:CDS | 30.0% | |
| GTTCTTCATTCACAAGTAAA+AGG | - | chr5.4:28990371-28990390 | None:intergenic | 30.0% | |
| TCTTAGGTAGTATTGTTAGA+AGG | + | chr5.4:28990514-28990533 | MS.gene83939:CDS | 30.0% | |
| TGAATGAAAAATGGAGACAA+TGG | + | chr5.4:28990767-28990786 | MS.gene83939:CDS | 30.0% | |
| ! | AATTCGTTGAATTTTACTCG+TGG | + | chr5.4:28992067-28992086 | MS.gene83939:intron | 30.0% |
| ! | CTTCATTATTGATTGGACTA+GGG | - | chr5.4:28992206-28992225 | None:intergenic | 30.0% |
| ! | TCTTCATTATTGATTGGACT+AGG | - | chr5.4:28992207-28992226 | None:intergenic | 30.0% |
| ! | TTCATTATTGATTGGACTAG+GGG | - | chr5.4:28992205-28992224 | None:intergenic | 30.0% |
| !! | AACTATGATTTGGTGAGATA+TGG | + | chr5.4:28991402-28991421 | MS.gene83939:intron | 30.0% |
| !! | TTCCAAGTTTTGATGTTGAT+GGG | - | chr5.4:28990552-28990571 | None:intergenic | 30.0% |
| !! | TTGATTCAAAGTCGATTTTC+TGG | + | chr5.4:28991885-28991904 | MS.gene83939:CDS | 30.0% |
| !! | TTTCCAAGTTTTGATGTTGA+TGG | - | chr5.4:28990553-28990572 | None:intergenic | 30.0% |
| !!! | CATCGCTTTTTTATTATCTG+AGG | - | chr5.4:28990583-28990602 | None:intergenic | 30.0% |
| !!! | GTAGAGTATTGTTTGTTTTG+TGG | + | chr5.4:28991439-28991458 | MS.gene83939:intron | 30.0% |
| ACAATGGAAGGGTGATTTAA+AGG | + | chr5.4:28990783-28990802 | MS.gene83939:CDS | 35.0% | |
| ATGTAAATATCTTGACGTCC+AGG | - | chr5.4:28991206-28991225 | None:intergenic | 35.0% | |
| ATTTCTTGTAGGTGAAGATG+AGG | + | chr5.4:28992337-28992356 | MS.gene83939:intron | 35.0% | |
| CAATCAACTCAAAACAAGCA+GGG | + | chr5.4:28991684-28991703 | MS.gene83939:CDS | 35.0% | |
| CGAAGAAGGAAATTGAGTAT+TGG | + | chr5.4:28990078-28990097 | MS.gene83939:CDS | 35.0% | |
| GAAAAATGGAGACAATGGAA+GGG | + | chr5.4:28990772-28990791 | MS.gene83939:CDS | 35.0% | |
| GATAGAGTTAAGACTATGGA+GGG | + | chr5.4:28991840-28991859 | MS.gene83939:CDS | 35.0% | |
| GCTGTTAATACAAAAGCAGT+TGG | - | chr5.4:28991555-28991574 | None:intergenic | 35.0% | |
| TATCAGGATGTCCATTGTAT+GGG | + | chr5.4:28991045-28991064 | MS.gene83939:CDS | 35.0% | |
| TCAATCAACTCAAAACAAGC+AGG | + | chr5.4:28991683-28991702 | MS.gene83939:CDS | 35.0% | |
| TCAGATTCAACAAATGTGCA+AGG | + | chr5.4:28990147-28990166 | MS.gene83939:CDS | 35.0% | |
| TCTCGCAATTCATCAGTTAT+TGG | - | chr5.4:28990730-28990749 | None:intergenic | 35.0% | |
| TGAAAAATGGAGACAATGGA+AGG | + | chr5.4:28990771-28990790 | MS.gene83939:CDS | 35.0% | |
| TGAATCTGAATTTGTGGGAA+GGG | - | chr5.4:28990136-28990155 | None:intergenic | 35.0% | |
| TGATAGAGTTAAGACTATGG+AGG | + | chr5.4:28991839-28991858 | MS.gene83939:CDS | 35.0% | |
| TGCTTTATCATGTTAGCAAC+AGG | + | chr5.4:28991482-28991501 | MS.gene83939:intron | 35.0% | |
| TTCTTCTTCAGCTTCTATGT+CGG | - | chr5.4:28990256-28990275 | None:intergenic | 35.0% | |
| TTGAATCTGAATTTGTGGGA+AGG | - | chr5.4:28990137-28990156 | None:intergenic | 35.0% | |
| !! | GAAAAGGCATTAGAGTTTCT+TGG | - | chr5.4:28991582-28991601 | None:intergenic | 35.0% |
| AACAATACTCTACTCACTCC+TGG | - | chr5.4:28991432-28991451 | None:intergenic | 40.0% | |
| ACAAATGTGCAAGGACTCAA+TGG | + | chr5.4:28990156-28990175 | MS.gene83939:CDS | 40.0% | |
| ACAATGGACATCCTGATACT+TGG | - | chr5.4:28991043-28991062 | None:intergenic | 40.0% | |
| AGTGAGATTCTACAGACTCA+TGG | - | chr5.4:28990224-28990243 | None:intergenic | 40.0% | |
| ATCAGGATGTCCATTGTATG+GGG | + | chr5.4:28991046-28991065 | MS.gene83939:CDS | 40.0% | |
| ATGTCATCCTTCCAAGACAT+AGG | - | chr5.4:28991711-28991730 | None:intergenic | 40.0% | |
| ATTGACGAAGCTCAATATCG+TGG | + | chr5.4:28990874-28990893 | MS.gene83939:CDS | 40.0% | |
| CACCCATCAACATCAAAACT+TGG | + | chr5.4:28990547-28990566 | MS.gene83939:CDS | 40.0% | |
| CGCAATTCATCAGTTATTGG+AGG | - | chr5.4:28990727-28990746 | None:intergenic | 40.0% | |
| GAAGAAGAACGTATTGTCGA+AGG | + | chr5.4:28990270-28990289 | MS.gene83939:CDS | 40.0% | |
| GAATTGAGTTACGTGATGCT+AGG | + | chr5.4:28990851-28990870 | MS.gene83939:CDS | 40.0% | |
| GATAACTATGGACGACCAAT+TGG | + | chr5.4:28990465-28990484 | MS.gene83939:CDS | 40.0% | |
| GATAATACAAGCTGCTAGAC+AGG | + | chr5.4:28991923-28991942 | MS.gene83939:CDS | 40.0% | |
| GCGTGATAGAGTTAAGACTA+TGG | + | chr5.4:28991836-28991855 | MS.gene83939:CDS | 40.0% | |
| GTATCAGGATGTCCATTGTA+TGG | + | chr5.4:28991044-28991063 | MS.gene83939:CDS | 40.0% | |
| TGAAGATGAGGAGGCTAATA+TGG | + | chr5.4:28992349-28992368 | MS.gene83939:CDS | 40.0% | |
| TTGACGAAGCTCAATATCGT+GGG | + | chr5.4:28990875-28990894 | MS.gene83939:CDS | 40.0% | |
| TTGCACTTGCTTTCTGCAAT+TGG | - | chr5.4:28991002-28991021 | None:intergenic | 40.0% | |
| TTGGTGAGATATGGAAAACC+AGG | + | chr5.4:28991411-28991430 | MS.gene83939:intron | 40.0% | |
| ! | ATTGGACTAGGGGAATTCAA+AGG | - | chr5.4:28992195-28992214 | None:intergenic | 40.0% |
| ! | GACTTTTTGTCCCCATACAA+TGG | - | chr5.4:28991059-28991078 | None:intergenic | 40.0% |
| ! | TCGTTGAATTTTACTCGTGG+TGG | + | chr5.4:28992070-28992089 | MS.gene83939:intron | 40.0% |
| ! | TTGGACTAGGGGAATTCAAA+GGG | - | chr5.4:28992194-28992213 | None:intergenic | 40.0% |
| !! | ATCGTGGGTTGGTTGAATAT+TGG | + | chr5.4:28990890-28990909 | MS.gene83939:CDS | 40.0% |
| AAGGGTGATTTAAAGGCAGC+TGG | + | chr5.4:28990790-28990809 | MS.gene83939:CDS | 45.0% | |
| ACGAAATCGTGCCAAGTATC+AGG | + | chr5.4:28991029-28991048 | MS.gene83939:CDS | 45.0% | |
| AGCGATGCTGGAACAAATAG+AGG | + | chr5.4:28990596-28990615 | MS.gene83939:CDS | 45.0% | |
| AGCTTCTATGTCGGAAGGAA+TGG | - | chr5.4:28990247-28990266 | None:intergenic | 45.0% | |
| AGTACAAGGAGCTGCAAAGA+AGG | + | chr5.4:28991740-28991759 | MS.gene83939:CDS | 45.0% | |
| CTAGGGGAATTCAAAGGGTT+AGG | - | chr5.4:28992189-28992208 | None:intergenic | 45.0% | |
| GAAACTCGCACACGTAAAGA+TGG | + | chr5.4:28991227-28991246 | MS.gene83939:CDS | 45.0% | |
| GAAGAACCTAAACGACGTAG+AGG | + | chr5.4:28990384-28990403 | MS.gene83939:intron | 45.0% | |
| GTACAAGGAGCTGCAAAGAA+GGG | + | chr5.4:28991741-28991760 | MS.gene83939:CDS | 45.0% | |
| GTTGGCAATCAGGCATGAAA+AGG | - | chr5.4:28991598-28991617 | None:intergenic | 45.0% | |
| TACAAGGAGCTGCAAAGAAG+GGG | + | chr5.4:28991742-28991761 | MS.gene83939:CDS | 45.0% | |
| TCTTCAGCTTCTATGTCGGA+AGG | - | chr5.4:28990252-28990271 | None:intergenic | 45.0% | |
| TCTTGTAGGTGAAGATGAGG+AGG | + | chr5.4:28992340-28992359 | MS.gene83939:intron | 45.0% | |
| ! | AATGGTGCAGAAACTGGTTC+TGG | + | chr5.4:28990174-28990193 | MS.gene83939:CDS | 45.0% |
| ! | ACGGCTTTTACCCGTTTCTT+AGG | + | chr5.4:28990498-28990517 | MS.gene83939:CDS | 45.0% |
| AAGGGAAAAGGAGTGATGCC+TGG | + | chr5.4:28991185-28991204 | MS.gene83939:CDS | 50.0% | |
| ACAAGCAGGGTCCTATGTCT+TGG | + | chr5.4:28991697-28991716 | MS.gene83939:CDS | 50.0% | |
| CGAAGCTCAATATCGTGGGT+TGG | + | chr5.4:28990879-28990898 | MS.gene83939:CDS | 50.0% | |
| GGACTCAATGGTGCAGAAAC+TGG | + | chr5.4:28990168-28990187 | MS.gene83939:CDS | 50.0% | |
| GTTGGACCTCTACGTCGTTT+AGG | - | chr5.4:28990393-28990412 | None:intergenic | 50.0% | |
| !! | ACCAATTGGTGACGAAGGGA+CGG | + | chr5.4:28990479-28990498 | MS.gene83939:CDS | 50.0% |
| !! | GACGACCAATTGGTGACGAA+GGG | + | chr5.4:28990475-28990494 | MS.gene83939:CDS | 50.0% |
| GCAGGGTCCTATGTCTTGGA+AGG | + | chr5.4:28991701-28991720 | MS.gene83939:CDS | 55.0% | |
| ! | AAGGGGCGTGTGCGATGTAT+AGG | + | chr5.4:28991759-28991778 | MS.gene83939:CDS | 55.0% |
| !! | GGACGACCAATTGGTGACGA+AGG | + | chr5.4:28990474-28990493 | MS.gene83939:CDS | 55.0% |
| GCCGTCCCTTCGTCACCAAT+TGG | - | chr5.4:28990483-28990502 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 28990072 | 28992379 | 28990072 | ID=MS.gene83939 |
| chr5.4 | mRNA | 28990072 | 28992379 | 28990072 | ID=MS.gene83939.t1;Parent=MS.gene83939 |
| chr5.4 | exon | 28990072 | 28990291 | 28990072 | ID=MS.gene83939.t1.exon1;Parent=MS.gene83939.t1 |
| chr5.4 | CDS | 28990072 | 28990291 | 28990072 | ID=cds.MS.gene83939.t1;Parent=MS.gene83939.t1 |
| chr5.4 | exon | 28990388 | 28990617 | 28990388 | ID=MS.gene83939.t1.exon2;Parent=MS.gene83939.t1 |
| chr5.4 | CDS | 28990388 | 28990617 | 28990388 | ID=cds.MS.gene83939.t1;Parent=MS.gene83939.t1 |
| chr5.4 | exon | 28990706 | 28990930 | 28990706 | ID=MS.gene83939.t1.exon3;Parent=MS.gene83939.t1 |
| chr5.4 | CDS | 28990706 | 28990930 | 28990706 | ID=cds.MS.gene83939.t1;Parent=MS.gene83939.t1 |
| chr5.4 | exon | 28991009 | 28991101 | 28991009 | ID=MS.gene83939.t1.exon4;Parent=MS.gene83939.t1 |
| chr5.4 | CDS | 28991009 | 28991101 | 28991009 | ID=cds.MS.gene83939.t1;Parent=MS.gene83939.t1 |
| chr5.4 | exon | 28991179 | 28991283 | 28991179 | ID=MS.gene83939.t1.exon5;Parent=MS.gene83939.t1 |
| chr5.4 | CDS | 28991179 | 28991283 | 28991179 | ID=cds.MS.gene83939.t1;Parent=MS.gene83939.t1 |
| chr5.4 | exon | 28991645 | 28991944 | 28991645 | ID=MS.gene83939.t1.exon6;Parent=MS.gene83939.t1 |
| chr5.4 | CDS | 28991645 | 28991944 | 28991645 | ID=cds.MS.gene83939.t1;Parent=MS.gene83939.t1 |
| chr5.4 | exon | 28992165 | 28992237 | 28992165 | ID=MS.gene83939.t1.exon7;Parent=MS.gene83939.t1 |
| chr5.4 | CDS | 28992165 | 28992237 | 28992165 | ID=cds.MS.gene83939.t1;Parent=MS.gene83939.t1 |
| chr5.4 | exon | 28992348 | 28992379 | 28992348 | ID=MS.gene83939.t1.exon8;Parent=MS.gene83939.t1 |
| chr5.4 | CDS | 28992348 | 28992379 | 28992348 | ID=cds.MS.gene83939.t1;Parent=MS.gene83939.t1 |
| Gene Sequence |
| Protein sequence |
