Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84133.t1 | XP_003602205.1 | 99 | 199 | 2 | 0 | 1 | 199 | 1 | 199 | 3.90E-109 | 404.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84133.t1 | Q9FGM1 | 79.3 | 184 | 34 | 1 | 8 | 187 | 2 | 185 | 9.4e-80 | 297.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84133.t1 | G7J6S4 | 99.0 | 199 | 2 | 0 | 1 | 199 | 1 | 199 | 2.8e-109 | 404.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene79764 | MS.gene84133 | PPI |
| MS.gene86009 | MS.gene84133 | PPI |
| MS.gene84133 | MS.gene59569 | PPI |
| MS.gene84133 | MS.gene95282 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84133.t1 | MTR_3g090980 | 98.995 | 199 | 2 | 0 | 1 | 199 | 1 | 199 | 3.99e-148 | 409 |
| MS.gene84133.t1 | MTR_1g028380 | 86.842 | 190 | 24 | 1 | 4 | 192 | 1 | 190 | 1.85e-122 | 344 |
| MS.gene84133.t1 | MTR_8g027805 | 75.269 | 186 | 45 | 1 | 5 | 190 | 3 | 187 | 3.80e-103 | 295 |
| MS.gene84133.t1 | MTR_3g071740 | 53.012 | 166 | 73 | 4 | 15 | 178 | 60 | 222 | 8.20e-59 | 184 |
| MS.gene84133.t1 | MTR_5g083270 | 52.147 | 163 | 72 | 3 | 19 | 178 | 44 | 203 | 9.46e-57 | 178 |
| MS.gene84133.t1 | MTR_7g070050 | 55.491 | 173 | 71 | 3 | 15 | 181 | 7 | 179 | 1.50e-55 | 174 |
| MS.gene84133.t1 | MTR_4g014460 | 45.455 | 176 | 91 | 2 | 8 | 178 | 32 | 207 | 6.71e-53 | 169 |
| MS.gene84133.t1 | MTR_1g016480 | 46.471 | 170 | 82 | 3 | 16 | 177 | 28 | 196 | 1.66e-52 | 167 |
| MS.gene84133.t1 | MTR_5g030500 | 48.795 | 166 | 78 | 3 | 20 | 179 | 43 | 207 | 1.19e-49 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84133.t1 | AT5G53160 | 79.348 | 184 | 34 | 1 | 8 | 187 | 2 | 185 | 2.62e-105 | 301 |
| MS.gene84133.t1 | AT1G01360 | 74.317 | 183 | 45 | 1 | 5 | 187 | 7 | 187 | 2.68e-98 | 283 |
| MS.gene84133.t1 | AT4G27920 | 71.591 | 176 | 45 | 2 | 4 | 178 | 1 | 172 | 2.75e-92 | 268 |
| MS.gene84133.t1 | AT4G01026 | 67.876 | 193 | 56 | 2 | 1 | 189 | 1 | 191 | 3.54e-90 | 263 |
| MS.gene84133.t1 | AT5G53160 | 75.214 | 117 | 25 | 1 | 8 | 120 | 2 | 118 | 5.36e-60 | 185 |
| MS.gene84133.t1 | AT5G05440 | 50.633 | 158 | 73 | 3 | 19 | 174 | 43 | 197 | 3.77e-53 | 169 |
| MS.gene84133.t1 | AT2G40330 | 48.171 | 164 | 81 | 2 | 19 | 178 | 46 | 209 | 3.78e-53 | 169 |
| MS.gene84133.t1 | AT2G38310 | 53.374 | 163 | 71 | 2 | 23 | 183 | 41 | 200 | 4.30e-53 | 169 |
| MS.gene84133.t1 | AT2G26040 | 45.238 | 168 | 87 | 3 | 21 | 184 | 22 | 188 | 4.55e-51 | 163 |
| MS.gene84133.t1 | AT4G17870 | 47.853 | 163 | 83 | 1 | 21 | 181 | 17 | 179 | 3.41e-48 | 156 |
| MS.gene84133.t1 | AT1G73000 | 41.176 | 170 | 89 | 2 | 21 | 179 | 37 | 206 | 1.25e-43 | 145 |
| MS.gene84133.t1 | AT5G45870 | 51.007 | 149 | 70 | 2 | 31 | 178 | 7 | 153 | 1.07e-39 | 133 |
| MS.gene84133.t1 | AT5G46790 | 46.341 | 164 | 83 | 2 | 21 | 179 | 44 | 207 | 1.20e-39 | 135 |
| MS.gene84133.t1 | AT5G46790 | 46.341 | 164 | 83 | 2 | 21 | 179 | 44 | 207 | 1.20e-39 | 135 |
| MS.gene84133.t1 | AT5G45860 | 49.383 | 162 | 73 | 3 | 18 | 178 | 1 | 154 | 1.23e-38 | 130 |
| MS.gene84133.t1 | AT4G18620 | 45.161 | 155 | 78 | 1 | 31 | 178 | 6 | 160 | 1.73e-35 | 122 |
Find 59 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTCTTCCATCAATAATTTC+TGG | 0.156182 | 3.1:+72908004 | None:intergenic |
| CTTTCTCTAGGTATGGTCTT+TGG | 0.253746 | 3.1:-72910044 | MS.gene84133:intron |
| TTTGAGATTGCACTTAATTA+AGG | 0.261510 | 3.1:+72907901 | None:intergenic |
| ATTCTAAGCATCAGGATTAT+TGG | 0.270575 | 3.1:-72909860 | MS.gene84133:CDS |
| GTCTTCCATCAATAATTTCT+GGG | 0.334881 | 3.1:+72908005 | None:intergenic |
| GATTCAATTACCAGGGTTCC+TGG | 0.344614 | 3.1:+72907983 | None:intergenic |
| GGATTATTGGTGGTGATCAT+AGG | 0.376992 | 3.1:-72909847 | MS.gene84133:CDS |
| CTCGGAAGGGCATGCTGTGC+AGG | 0.389173 | 3.1:-72907864 | MS.gene84133:CDS |
| AGAGAAGTTGATGTTAAGTC+AGG | 0.400572 | 3.1:-72909938 | MS.gene84133:CDS |
| CTCCACCCAGAAATTATTGA+TGG | 0.415182 | 3.1:-72908010 | MS.gene84133:CDS |
| AGATTGATTACAAGAGGAAC+AGG | 0.418165 | 3.1:+72910677 | None:intergenic |
| TTGGTGGTGATCATAGGCTT+AGG | 0.430017 | 3.1:-72909841 | MS.gene84133:CDS |
| GTGAGGGGAAACCTTGAGAT+TGG | 0.441356 | 3.1:-72909968 | MS.gene84133:CDS |
| TCATCCTTGGTATTCCCCTC+TGG | 0.450075 | 3.1:+72907944 | None:intergenic |
| ATGAGCATATTCTAAGCATC+AGG | 0.464677 | 3.1:-72909868 | MS.gene84133:CDS |
| TACAACTAGTACTGAAAGAT+TGG | 0.468120 | 3.1:-72909906 | MS.gene84133:CDS |
| AATATAAACCATTCGTGAGC+AGG | 0.468294 | 3.1:-72909997 | MS.gene84133:CDS |
| CCACAAAAGATTCAATTACC+AGG | 0.481100 | 3.1:+72907975 | None:intergenic |
| CATCAATAATTTCTGGGTGG+AGG | 0.490844 | 3.1:+72908011 | None:intergenic |
| TGGTGGTGATCATAGGCTTA+GGG | 0.497834 | 3.1:-72909840 | MS.gene84133:intron |
| ATCAATAATTTCTGGGTGGA+GGG | 0.509205 | 3.1:+72908012 | None:intergenic |
| CTTTCAGTACTAGTTGTAGC+AGG | 0.511083 | 3.1:+72909911 | None:intergenic |
| CAAATCACTTTCAGATGTCT+CGG | 0.517164 | 3.1:-72907882 | MS.gene84133:CDS |
| AGGTATGGTCTTTGGTGAGG+AGG | 0.517669 | 3.1:-72910036 | MS.gene84133:CDS |
| ACCTCACTGAACCACTTGAT+CGG | 0.518102 | 3.1:-72907841 | MS.gene84133:CDS |
| TAAGGCTTCAACGAAGTAGC+AGG | 0.523056 | 3.1:+72907919 | None:intergenic |
| CTCTTAAACTCCCAATCTCA+AGG | 0.524215 | 3.1:+72909957 | None:intergenic |
| TGAGGGGAAACCTTGAGATT+GGG | 0.526415 | 3.1:-72909967 | MS.gene84133:CDS |
| CGTGAGCAGGTGTGTGGTGA+GGG | 0.527012 | 3.1:-72909984 | MS.gene84133:CDS |
| GAATATGCTCATTGTCATCA+AGG | 0.528687 | 3.1:+72909879 | None:intergenic |
| GAAGAACACTGATTCTGTCC+AGG | 0.537074 | 3.1:+72910725 | None:intergenic |
| TCTAGGTATGGTCTTTGGTG+AGG | 0.537536 | 3.1:-72910039 | MS.gene84133:intron |
| GAAGTAGCAGGTCTCATCCT+TGG | 0.540678 | 3.1:+72907931 | None:intergenic |
| AGTGTTTAACACCACGGAGA+TGG | 0.545954 | 3.1:-72910777 | MS.gene84133:CDS |
| ACGAATGGTTTATATTTCTG+CGG | 0.550997 | 3.1:+72910004 | None:intergenic |
| GAAATTATTGATGGAAGACC+AGG | 0.551294 | 3.1:-72908001 | MS.gene84133:CDS |
| AACTAGTACTGAAAGATTGG+AGG | 0.551568 | 3.1:-72909903 | MS.gene84133:CDS |
| AACTCATGCATCCGATCAAG+TGG | 0.554489 | 3.1:+72907830 | None:intergenic |
| AGACATCACAATCAACAGCC+TGG | 0.570498 | 3.1:-72910743 | MS.gene84133:CDS |
| CTAAGCATCAGGATTATTGG+TGG | 0.576552 | 3.1:-72909857 | MS.gene84133:CDS |
| TCACTTTCAGATGTCTCGGA+AGG | 0.579393 | 3.1:-72907878 | MS.gene84133:CDS |
| ACCACACACCTGCTCACGAA+TGG | 0.579553 | 3.1:+72909989 | None:intergenic |
| GAGAAGTTGATGTTAAGTCA+GGG | 0.583074 | 3.1:-72909937 | MS.gene84133:CDS |
| ATGCATGAGTTGTTGATAAG+TGG | 0.595471 | 3.1:-72907818 | MS.gene84133:CDS |
| TCGTGAGCAGGTGTGTGGTG+AGG | 0.600369 | 3.1:-72909985 | MS.gene84133:CDS |
| CACAAAAGATTCAATTACCA+GGG | 0.601688 | 3.1:+72907976 | None:intergenic |
| CACTTTCAGATGTCTCGGAA+GGG | 0.603305 | 3.1:-72907877 | MS.gene84133:CDS |
| TGATGGAAGACCAGGAACCC+TGG | 0.609392 | 3.1:-72907993 | MS.gene84133:CDS |
| TTTGTGGTAGATGTACCAGA+GGG | 0.648012 | 3.1:-72907959 | MS.gene84133:CDS |
| TTCCATCAATAATTTCTGGG+TGG | 0.663028 | 3.1:+72908008 | None:intergenic |
| TCGGCGATGGAGAAAATGAA+CGG | 0.670990 | 3.1:-72910815 | None:intergenic |
| ACCATTCGTGAGCAGGTGTG+TGG | 0.686863 | 3.1:-72909990 | MS.gene84133:CDS |
| CAACGGAGTGTTTAACACCA+CGG | 0.688274 | 3.1:-72910783 | MS.gene84133:CDS |
| TCCGATCAAGTGGTTCAGTG+AGG | 0.707128 | 3.1:+72907840 | None:intergenic |
| GTGAGCAGGTGTGTGGTGAG+GGG | 0.713491 | 3.1:-72909983 | MS.gene84133:CDS |
| ATGAACGGAACTGAAAACAA+CGG | 0.716623 | 3.1:-72910800 | MS.gene84133:CDS |
| TGTACCAGAGGGGAATACCA+AGG | 0.724913 | 3.1:-72907948 | MS.gene84133:CDS |
| TCTGATGTACTCCATCTCCG+TGG | 0.739793 | 3.1:+72910766 | None:intergenic |
| TTGTGGTAGATGTACCAGAG+GGG | 0.770632 | 3.1:-72907958 | MS.gene84133:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATATGCTTTTTTTTTTAA+TGG | - | chr3.1:72909711-72909730 | MS.gene84133:intron | 10.0% |
| !!! | TTTTTTTTTTTTTAGCTTTT+CGG | - | chr3.1:72908018-72908037 | MS.gene84133:CDS | 10.0% |
| !! | AATATAAATCAAGTAAAACA+TGG | - | chr3.1:72910405-72910424 | MS.gene84133:intron | 15.0% |
| !! | TAATAGAATCATTTAAACTA+TGG | + | chr3.1:72908264-72908283 | None:intergenic | 15.0% |
| !!! | TTTTTCAAAAAATTTACTTG+TGG | - | chr3.1:72908372-72908391 | MS.gene84133:intron | 15.0% |
| !! | AAAGGAAAAATATAAAGTGT+CGG | - | chr3.1:72909840-72909859 | MS.gene84133:intron | 20.0% |
| !! | ACACGTAATTTAGTATATTT+GGG | - | chr3.1:72909246-72909265 | MS.gene84133:intron | 20.0% |
| !! | ATAAAATTATACACCTTGAA+AGG | + | chr3.1:72910205-72910224 | None:intergenic | 20.0% |
| !! | TACACGTAATTTAGTATATT+TGG | - | chr3.1:72909245-72909264 | MS.gene84133:intron | 20.0% |
| !! | TATACATAATTAATCTCTGT+CGG | - | chr3.1:72908989-72909008 | MS.gene84133:intron | 20.0% |
| !! | TGTTTCATTCATATAATTGA+CGG | - | chr3.1:72909096-72909115 | MS.gene84133:intron | 20.0% |
| !!! | AAAAAAAAGCATATAACTAG+AGG | + | chr3.1:72909707-72909726 | None:intergenic | 20.0% |
| !!! | AAAAAAAGCATATAACTAGA+GGG | + | chr3.1:72909706-72909725 | None:intergenic | 20.0% |
| !!! | GTTTCAAGTTTAAATTATGA+TGG | + | chr3.1:72909362-72909381 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGTTAATTAAGCA+AGG | + | chr3.1:72910554-72910573 | None:intergenic | 20.0% |
| ! | AAAAATCTCTAATCCATATC+TGG | - | chr3.1:72909019-72909038 | MS.gene84133:intron | 25.0% |
| ! | AAAATCTCTAATCCATATCT+GGG | - | chr3.1:72909020-72909039 | MS.gene84133:intron | 25.0% |
| ! | AAACTATGACAGTTAATTAG+TGG | + | chr3.1:72910033-72910052 | None:intergenic | 25.0% |
| ! | AAATCAAGTAAAACATGGAA+GGG | - | chr3.1:72910410-72910429 | MS.gene84133:intron | 25.0% |
| ! | AGAATCTAGCAAATCAAAAA+CGG | + | chr3.1:72907997-72908016 | None:intergenic | 25.0% |
| ! | AGAGTAATGAAGGTAAATTA+CGG | + | chr3.1:72908825-72908844 | None:intergenic | 25.0% |
| ! | ATAGTAAGATTGATTACAAG+AGG | + | chr3.1:72907955-72907974 | None:intergenic | 25.0% |
| ! | CACGTAATTTAGTATATTTG+GGG | - | chr3.1:72909247-72909266 | MS.gene84133:intron | 25.0% |
| ! | CATTCTTAGCAATATATGAT+GGG | + | chr3.1:72909778-72909797 | None:intergenic | 25.0% |
| ! | GATTTATATTCCATAATCAG+AGG | + | chr3.1:72910395-72910414 | None:intergenic | 25.0% |
| ! | TAAATCAAGTAAAACATGGA+AGG | - | chr3.1:72910409-72910428 | MS.gene84133:intron | 25.0% |
| ! | TACGTGTATAATAATACAAC+TGG | + | chr3.1:72909233-72909252 | None:intergenic | 25.0% |
| ! | TCTTCCCAAAATATTAAATG+CGG | + | chr3.1:72910285-72910304 | None:intergenic | 25.0% |
| ! | TTAAGATTCCTTGAATTCTT+AGG | - | chr3.1:72910007-72910026 | MS.gene84133:CDS | 25.0% |
| ! | TTTCAACAAAAGAGTAATGA+AGG | + | chr3.1:72908835-72908854 | None:intergenic | 25.0% |
| ! | TTTGTATTAAACCATTCTTG+TGG | + | chr3.1:72910131-72910150 | None:intergenic | 25.0% |
| !! | AGCTAAAATTTTCATTGTCT+AGG | - | chr3.1:72909954-72909973 | MS.gene84133:CDS | 25.0% |
| !! | GATATTAGTTTATAGGTACA+TGG | - | chr3.1:72909498-72909517 | MS.gene84133:intron | 25.0% |
| !! | TTCTAGAGACATCATAATAT+AGG | + | chr3.1:72910077-72910096 | None:intergenic | 25.0% |
| !! | TTTGAGATTGCACTTAATTA+AGG | + | chr3.1:72910725-72910744 | None:intergenic | 25.0% |
| !!! | CTTTTAAATTTCTGGGAATT+AGG | + | chr3.1:72909626-72909645 | None:intergenic | 25.0% |
| !!! | GACAATGAAAATTTTAGCTA+CGG | + | chr3.1:72909953-72909972 | None:intergenic | 25.0% |
| !!! | TGTTTTTTTTTCCTTTCTCT+AGG | - | chr3.1:72908567-72908586 | MS.gene84133:intron | 25.0% |
| AAGGAATCTTAAAATGTCCT+TGG | + | chr3.1:72909999-72910018 | None:intergenic | 30.0% | |
| ATTCTAAGCATCAGGATTAT+TGG | - | chr3.1:72908763-72908782 | MS.gene84133:intron | 30.0% | |
| CACAAAAGATTCAATTACCA+GGG | + | chr3.1:72910650-72910669 | None:intergenic | 30.0% | |
| CCATCATATATTGCTAAGAA+TGG | - | chr3.1:72909776-72909795 | MS.gene84133:intron | 30.0% | |
| CCATTCTTAGCAATATATGA+TGG | + | chr3.1:72909779-72909798 | None:intergenic | 30.0% | |
| GATAGAAATTTCAGAATGAG+TGG | + | chr3.1:72908877-72908896 | None:intergenic | 30.0% | |
| GGTAAATTTGAAAACATGTC+TGG | - | chr3.1:72910258-72910277 | MS.gene84133:intron | 30.0% | |
| GTAATTTAGTATATTTGGGG+TGG | - | chr3.1:72909250-72909269 | MS.gene84133:intron | 30.0% | |
| GTCTTCCATCAATAATTTCT+GGG | + | chr3.1:72910621-72910640 | None:intergenic | 30.0% | |
| TATAGGTACATGGTCAAAAT+AGG | - | chr3.1:72909508-72909527 | MS.gene84133:intron | 30.0% | |
| TCAATAATCTCTCTTCACTT+TGG | - | chr3.1:72910172-72910191 | MS.gene84133:intron | 30.0% | |
| TGATATTACGATGTAGAGTT+TGG | - | chr3.1:72908478-72908497 | MS.gene84133:intron | 30.0% | |
| TTACCTAAAAGTAACATTCC+CGG | + | chr3.1:72910243-72910262 | None:intergenic | 30.0% | |
| TTATATTCCATAATCAGAGG+TGG | + | chr3.1:72910392-72910411 | None:intergenic | 30.0% | |
| ! | ACGAATGGTTTATATTTCTG+CGG | + | chr3.1:72908622-72908641 | None:intergenic | 30.0% |
| ! | AGACTAGGCTTTTAAATTTC+TGG | + | chr3.1:72909634-72909653 | None:intergenic | 30.0% |
| ! | GACTAGGCTTTTAAATTTCT+GGG | + | chr3.1:72909633-72909652 | None:intergenic | 30.0% |
| ! | GAGCTCTGATATTAGTTTAT+AGG | - | chr3.1:72909491-72909510 | MS.gene84133:intron | 30.0% |
| ! | TACAACTAGTACTGAAAGAT+TGG | - | chr3.1:72908717-72908736 | MS.gene84133:intron | 30.0% |
| ! | TGGTCCGCATTTAATATTTT+GGG | - | chr3.1:72910278-72910297 | MS.gene84133:intron | 30.0% |
| ! | TTATCCTTTTGTCGTTATGA+TGG | - | chr3.1:72909285-72909304 | MS.gene84133:intron | 30.0% |
| ! | TTGTTGTTAATTAAGCAAGG+TGG | + | chr3.1:72910551-72910570 | None:intergenic | 30.0% |
| !! | TATGTATATTCTGTTTCTGC+CGG | + | chr3.1:72908977-72908996 | None:intergenic | 30.0% |
| !!! | TTTTTTCCTTTCTCTAGGTA+TGG | - | chr3.1:72908572-72908591 | MS.gene84133:intron | 30.0% |
| AAAGTAGAGATCCTATGCAT+CGG | + | chr3.1:72909329-72909348 | None:intergenic | 35.0% | |
| AATATAAACCATTCGTGAGC+AGG | - | chr3.1:72908626-72908645 | MS.gene84133:intron | 35.0% | |
| AATTTCAGAATGAGTGGTTG+AGG | + | chr3.1:72908871-72908890 | None:intergenic | 35.0% | |
| AGATTGATTACAAGAGGAAC+AGG | + | chr3.1:72907949-72907968 | None:intergenic | 35.0% | |
| AGCAATTCCAATGAGAAACA+TGG | + | chr3.1:72908220-72908239 | None:intergenic | 35.0% | |
| AGTATATCCACCTCTGATTA+TGG | - | chr3.1:72910382-72910401 | MS.gene84133:intron | 35.0% | |
| ATCCGTTACCATATAACTAG+TGG | + | chr3.1:72909739-72909758 | None:intergenic | 35.0% | |
| ATGAACGGAACTGAAAACAA+CGG | - | chr3.1:72907823-72907842 | MS.gene84133:CDS | 35.0% | |
| ATGAGATTGCATGCAATATG+TGG | + | chr3.1:72908899-72908918 | None:intergenic | 35.0% | |
| ATGAGCATATTCTAAGCATC+AGG | - | chr3.1:72908755-72908774 | MS.gene84133:intron | 35.0% | |
| ATTAGTGGCCTAAGAATTCA+AGG | + | chr3.1:72910018-72910037 | None:intergenic | 35.0% | |
| CAAATCACTTTCAGATGTCT+CGG | - | chr3.1:72910741-72910760 | MS.gene84133:CDS | 35.0% | |
| CCACAAAAGATTCAATTACC+AGG | + | chr3.1:72910651-72910670 | None:intergenic | 35.0% | |
| GAAATTATTGATGGAAGACC+AGG | - | chr3.1:72910622-72910641 | MS.gene84133:intron | 35.0% | |
| GAATATGCTCATTGTCATCA+AGG | + | chr3.1:72908747-72908766 | None:intergenic | 35.0% | |
| GCCTTAACGAAAACAATCTA+AGG | + | chr3.1:72910459-72910478 | None:intergenic | 35.0% | |
| GGTCTTCCATCAATAATTTC+TGG | + | chr3.1:72910622-72910641 | None:intergenic | 35.0% | |
| GTTAAGGCTTGCACTTAATT+TGG | - | chr3.1:72910471-72910490 | MS.gene84133:intron | 35.0% | |
| TAAATGATGCGAGAAAGAAG+TGG | - | chr3.1:72910317-72910336 | MS.gene84133:intron | 35.0% | |
| TCAGATAGCATGAGAATGAA+AGG | + | chr3.1:72910359-72910378 | None:intergenic | 35.0% | |
| TCCGTTACCATATAACTAGT+GGG | + | chr3.1:72909738-72909757 | None:intergenic | 35.0% | |
| TCTATTAGTTCGTTGCTTGA+GGG | - | chr3.1:72909064-72909083 | MS.gene84133:intron | 35.0% | |
| TTCAACCAATTGTCAAACCA+AGG | - | chr3.1:72909979-72909998 | MS.gene84133:CDS | 35.0% | |
| TTGTTAATTAAGCAAGGTGG+AGG | + | chr3.1:72910548-72910567 | None:intergenic | 35.0% | |
| ! | AACTAGTACTGAAAGATTGG+AGG | - | chr3.1:72908720-72908739 | MS.gene84133:intron | 35.0% |
| ! | AATGTCCTTGGTTTGACAAT+TGG | + | chr3.1:72909987-72910006 | None:intergenic | 35.0% |
| ! | ATATGATGGGAAACAGTGTT+AGG | + | chr3.1:72909765-72909784 | None:intergenic | 35.0% |
| ! | ATCAATAATTTCTGGGTGGA+GGG | + | chr3.1:72910614-72910633 | None:intergenic | 35.0% |
| ! | ATGCATGAGTTGTTGATAAG+TGG | - | chr3.1:72910805-72910824 | MS.gene84133:CDS | 35.0% |
| ! | CCTGGTAATTGAATCTTTTG+TGG | - | chr3.1:72910648-72910667 | MS.gene84133:intron | 35.0% |
| ! | CTGGTCCGCATTTAATATTT+TGG | - | chr3.1:72910277-72910296 | MS.gene84133:intron | 35.0% |
| ! | GCCTTAGATTGTTTTCGTTA+AGG | - | chr3.1:72910455-72910474 | MS.gene84133:intron | 35.0% |
| ! | TCATGTGCATCGTTTTACAA+AGG | - | chr3.1:72909822-72909841 | MS.gene84133:intron | 35.0% |
| ! | TCTAAGGCAATATTGAGTCT+AGG | + | chr3.1:72910443-72910462 | None:intergenic | 35.0% |
| ! | TTCCATCAATAATTTCTGGG+TGG | + | chr3.1:72910618-72910637 | None:intergenic | 35.0% |
| ! | TTTAGTATATTTGGGGTGGA+AGG | - | chr3.1:72909254-72909273 | MS.gene84133:intron | 35.0% |
| !! | AAGAGAGATTATTGACTCAG+AGG | + | chr3.1:72910167-72910186 | None:intergenic | 35.0% |
| !! | AGAGAAGTTGATGTTAAGTC+AGG | - | chr3.1:72908685-72908704 | MS.gene84133:intron | 35.0% |
| !! | GAGAAGTTGATGTTAAGTCA+GGG | - | chr3.1:72908686-72908705 | MS.gene84133:intron | 35.0% |
| !! | TTATTGACTCAGAGGAATCT+TGG | + | chr3.1:72910159-72910178 | None:intergenic | 35.0% |
| !!! | AGTTTTACATGGACTAGACT+AGG | + | chr3.1:72909649-72909668 | None:intergenic | 35.0% |
| !!! | GCTGGTTAGTTAGTTTTACA+TGG | + | chr3.1:72909660-72909679 | None:intergenic | 35.0% |
| AAGTGCTTAAGCCACAAGAA+TGG | - | chr3.1:72910117-72910136 | MS.gene84133:intron | 40.0% | |
| ACCAGAAGAACCAAACATCA+AGG | + | chr3.1:72909914-72909933 | None:intergenic | 40.0% | |
| ACTTATCAGTTGAGCAAGCA+TGG | + | chr3.1:72909424-72909443 | None:intergenic | 40.0% | |
| ATGTAATTCGCATGTGTCAG+TGG | + | chr3.1:72908339-72908358 | None:intergenic | 40.0% | |
| CAAAGACCATACCTAGAGAA+AGG | + | chr3.1:72908581-72908600 | None:intergenic | 40.0% | |
| CCCCACTAGTTATATGGTAA+CGG | - | chr3.1:72909734-72909753 | MS.gene84133:intron | 40.0% | |
| CCGTTACCATATAACTAGTG+GGG | + | chr3.1:72909737-72909756 | None:intergenic | 40.0% | |
| CTAAGCATCAGGATTATTGG+TGG | - | chr3.1:72908766-72908785 | MS.gene84133:intron | 40.0% | |
| CTCCACCCAGAAATTATTGA+TGG | - | chr3.1:72910613-72910632 | MS.gene84133:intron | 40.0% | |
| CTCTTAAACTCCCAATCTCA+AGG | + | chr3.1:72908669-72908688 | None:intergenic | 40.0% | |
| CTTGCCATCATAACGACAAA+AGG | + | chr3.1:72909292-72909311 | None:intergenic | 40.0% | |
| CTTTCAGTACTAGTTGTAGC+AGG | + | chr3.1:72908715-72908734 | None:intergenic | 40.0% | |
| CTTTCTCTAGGTATGGTCTT+TGG | - | chr3.1:72908579-72908598 | MS.gene84133:intron | 40.0% | |
| GATTCTGCCATGTTTCTCAT+TGG | - | chr3.1:72908210-72908229 | MS.gene84133:intron | 40.0% | |
| GGTACATGGTCAAAATAGGA+AGG | - | chr3.1:72909512-72909531 | MS.gene84133:intron | 40.0% | |
| GTCTATTAGTTCGTTGCTTG+AGG | - | chr3.1:72909063-72909082 | MS.gene84133:intron | 40.0% | |
| GTGTAAGATACACATTGCAC+CGG | - | chr3.1:72908955-72908974 | MS.gene84133:intron | 40.0% | |
| TAATGGCCCCACTAGTTATA+TGG | - | chr3.1:72909728-72909747 | MS.gene84133:intron | 40.0% | |
| TCGACAAGTTCCTTGATGTT+TGG | - | chr3.1:72909901-72909920 | MS.gene84133:CDS | 40.0% | |
| TTAATTAAGCAAGGTGGAGG+AGG | + | chr3.1:72910545-72910564 | None:intergenic | 40.0% | |
| TTCTTGTGGCTTAAGCACTT+AGG | + | chr3.1:72910117-72910136 | None:intergenic | 40.0% | |
| TTTGTGGTAGATGTACCAGA+GGG | - | chr3.1:72910664-72910683 | MS.gene84133:intron | 40.0% | |
| ! | ACGCATTTCATCAGAAGTGT+CGG | + | chr3.1:72908287-72908306 | None:intergenic | 40.0% |
| ! | CATCAATAATTTCTGGGTGG+AGG | + | chr3.1:72910615-72910634 | None:intergenic | 40.0% |
| ! | CTTTGGAGATGTTCCTTTCA+AGG | - | chr3.1:72910189-72910208 | MS.gene84133:intron | 40.0% |
| ! | GCTTAAGCACTTAGGCTTTT+GGG | + | chr3.1:72910109-72910128 | None:intergenic | 40.0% |
| ! | TTTTGTGGTAGATGTACCAG+AGG | - | chr3.1:72910663-72910682 | MS.gene84133:intron | 40.0% |
| !! | GCACTGACACTTTTAATGGA+AGG | - | chr3.1:72908069-72908088 | MS.gene84133:intron | 40.0% |
| !! | GGATTATTGGTGGTGATCAT+AGG | - | chr3.1:72908776-72908795 | MS.gene84133:intron | 40.0% |
| !! | TCCATTAAAAGTGTCAGTGC+TGG | + | chr3.1:72908069-72908088 | None:intergenic | 40.0% |
| !! | TCCTTGATGTTTGGTTCTTC+TGG | - | chr3.1:72909910-72909929 | MS.gene84133:CDS | 40.0% |
| !!! | TCCAGCACTGACACTTTTAA+TGG | - | chr3.1:72908065-72908084 | MS.gene84133:intron | 40.0% |
| !!! | TGTCCGGGAATGTTACTTTT+AGG | - | chr3.1:72910237-72910256 | MS.gene84133:intron | 40.0% |
| AACTCATGCATCCGATCAAG+TGG | + | chr3.1:72910796-72910815 | None:intergenic | 45.0% | |
| ACCTCACTGAACCACTTGAT+CGG | - | chr3.1:72910782-72910801 | MS.gene84133:CDS | 45.0% | |
| AGACATCACAATCAACAGCC+TGG | - | chr3.1:72907880-72907899 | MS.gene84133:CDS | 45.0% | |
| AGTGTTTAACACCACGGAGA+TGG | - | chr3.1:72907846-72907865 | MS.gene84133:CDS | 45.0% | |
| ATGAAGCACGACACATACAC+TGG | + | chr3.1:72908418-72908437 | None:intergenic | 45.0% | |
| ATGCATCGGAAACAAGTACC+AGG | + | chr3.1:72909315-72909334 | None:intergenic | 45.0% | |
| CACTTTCAGATGTCTCGGAA+GGG | - | chr3.1:72910746-72910765 | MS.gene84133:CDS | 45.0% | |
| CTTCTGATGAAATGCGTGTC+TGG | - | chr3.1:72908290-72908309 | MS.gene84133:intron | 45.0% | |
| GAGATGCAGTGAAAGTTTGC+AGG | + | chr3.1:72909384-72909403 | None:intergenic | 45.0% | |
| GAGCTCAGATCTTTGAGCTA+TGG | + | chr3.1:72909477-72909496 | None:intergenic | 45.0% | |
| GATTCAATTACCAGGGTTCC+TGG | + | chr3.1:72910643-72910662 | None:intergenic | 45.0% | |
| GGATGTCGATACTGTTAGGA+AGG | - | chr3.1:72909041-72909060 | MS.gene84133:intron | 45.0% | |
| GGTACTTGTTTCCGATGCAT+AGG | - | chr3.1:72909315-72909334 | MS.gene84133:intron | 45.0% | |
| TAAGGCTTCAACGAAGTAGC+AGG | + | chr3.1:72910707-72910726 | None:intergenic | 45.0% | |
| TACGATGTAGAGTTTGGCTG+TGG | - | chr3.1:72908484-72908503 | MS.gene84133:intron | 45.0% | |
| TCACTTTCAGATGTCTCGGA+AGG | - | chr3.1:72910745-72910764 | MS.gene84133:CDS | 45.0% | |
| TCTAGGTATGGTCTTTGGTG+AGG | - | chr3.1:72908584-72908603 | MS.gene84133:intron | 45.0% | |
| TGAGGGGAAACCTTGAGATT+GGG | - | chr3.1:72908656-72908675 | MS.gene84133:intron | 45.0% | |
| TGGAAGACACCAACATGTGT+CGG | + | chr3.1:72908319-72908338 | None:intergenic | 45.0% | |
| TTATTCCCGAGAACACTGTC+CGG | - | chr3.1:72910221-72910240 | MS.gene84133:intron | 45.0% | |
| TTGTGGTAGATGTACCAGAG+GGG | - | chr3.1:72910665-72910684 | MS.gene84133:intron | 45.0% | |
| ! | CAACGGAGTGTTTAACACCA+CGG | - | chr3.1:72907840-72907859 | MS.gene84133:CDS | 45.0% |
| ! | GGCTTAAGCACTTAGGCTTT+TGG | + | chr3.1:72910110-72910129 | None:intergenic | 45.0% |
| ! | TCTGGGATGTCGATACTGTT+AGG | - | chr3.1:72909037-72909056 | MS.gene84133:intron | 45.0% |
| ! | TGGTGGTGATCATAGGCTTA+GGG | - | chr3.1:72908783-72908802 | MS.gene84133:intron | 45.0% |
| !! | CAGTATCGACATCCCAGATA+TGG | + | chr3.1:72909035-72909054 | None:intergenic | 45.0% |
| !! | GAAGAACACTGATTCTGTCC+AGG | + | chr3.1:72907901-72907920 | None:intergenic | 45.0% |
| !! | TAAAGTGTCGGTTCTTCTGC+TGG | - | chr3.1:72909852-72909871 | MS.gene84133:CDS | 45.0% |
| !! | TTGGTGGTGATCATAGGCTT+AGG | - | chr3.1:72908782-72908801 | MS.gene84133:intron | 45.0% |
| ACATTCCCGGACAGTGTTCT+CGG | + | chr3.1:72910230-72910249 | None:intergenic | 50.0% | |
| ACCAGCTCACTGCTACACTT+AGG | - | chr3.1:72909674-72909693 | MS.gene84133:intron | 50.0% | |
| ACCTAAGTGTAGCAGTGAGC+TGG | + | chr3.1:72909678-72909697 | None:intergenic | 50.0% | |
| AGGTATGGTCTTTGGTGAGG+AGG | - | chr3.1:72908587-72908606 | MS.gene84133:intron | 50.0% | |
| ATTAAGCAAGGTGGAGGAGG+AGG | + | chr3.1:72910542-72910561 | None:intergenic | 50.0% | |
| GAAGTAGCAGGTCTCATCCT+TGG | + | chr3.1:72910695-72910714 | None:intergenic | 50.0% | |
| GTCTGGTATCCGACACATGT+TGG | - | chr3.1:72908307-72908326 | MS.gene84133:intron | 50.0% | |
| GTGAGGGGAAACCTTGAGAT+TGG | - | chr3.1:72908655-72908674 | MS.gene84133:intron | 50.0% | |
| TATTCCCGAGAACACTGTCC+GGG | - | chr3.1:72910222-72910241 | MS.gene84133:intron | 50.0% | |
| TCATCCTTGGTATTCCCCTC+TGG | + | chr3.1:72910682-72910701 | None:intergenic | 50.0% | |
| TCCGATCAAGTGGTTCAGTG+AGG | + | chr3.1:72910786-72910805 | None:intergenic | 50.0% | |
| TCTGATGTACTCCATCTCCG+TGG | + | chr3.1:72907860-72907879 | None:intergenic | 50.0% | |
| TGTACCAGAGGGGAATACCA+AGG | - | chr3.1:72910675-72910694 | MS.gene84133:intron | 50.0% | |
| TGTCGTTATGATGGCAAGCC+TGG | - | chr3.1:72909294-72909313 | MS.gene84133:intron | 50.0% | |
| ACCACACACCTGCTCACGAA+TGG | + | chr3.1:72908637-72908656 | None:intergenic | 55.0% | |
| ACCATTCGTGAGCAGGTGTG+TGG | - | chr3.1:72908633-72908652 | MS.gene84133:intron | 55.0% | |
| CATTCCCGGACAGTGTTCTC+GGG | + | chr3.1:72910229-72910248 | None:intergenic | 55.0% | |
| TGATGGAAGACCAGGAACCC+TGG | - | chr3.1:72910630-72910649 | MS.gene84133:intron | 55.0% | |
| CGTGAGCAGGTGTGTGGTGA+GGG | - | chr3.1:72908639-72908658 | MS.gene84133:intron | 60.0% | |
| GTGAGCAGGTGTGTGGTGAG+GGG | - | chr3.1:72908640-72908659 | MS.gene84133:intron | 60.0% | |
| TCGTGAGCAGGTGTGTGGTG+AGG | - | chr3.1:72908638-72908657 | MS.gene84133:intron | 60.0% | |
| ! | CTCGGAAGGGCATGCTGTGC+AGG | - | chr3.1:72910759-72910778 | MS.gene84133:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 72907814 | 72910831 | 72907814 | ID=MS.gene84133 |
| chr3.1 | mRNA | 72907814 | 72910831 | 72907814 | ID=MS.gene84133.t1;Parent=MS.gene84133 |
| chr3.1 | exon | 72910688 | 72910831 | 72910688 | ID=MS.gene84133.t1.exon1;Parent=MS.gene84133.t1 |
| chr3.1 | CDS | 72910688 | 72910831 | 72910688 | ID=cds.MS.gene84133.t1;Parent=MS.gene84133.t1 |
| chr3.1 | exon | 72909841 | 72910056 | 72909841 | ID=MS.gene84133.t1.exon2;Parent=MS.gene84133.t1 |
| chr3.1 | CDS | 72909841 | 72910056 | 72909841 | ID=cds.MS.gene84133.t1;Parent=MS.gene84133.t1 |
| chr3.1 | exon | 72907814 | 72908053 | 72907814 | ID=MS.gene84133.t1.exon3;Parent=MS.gene84133.t1 |
| chr3.1 | CDS | 72907814 | 72908053 | 72907814 | ID=cds.MS.gene84133.t1;Parent=MS.gene84133.t1 |
| Gene Sequence |
| Protein sequence |
