Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84142.t1 | XP_003602194.1 | 98.2 | 329 | 6 | 0 | 1 | 329 | 1 | 329 | 1.70E-149 | 538.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84142.t1 | Q700C7 | 54.3 | 370 | 122 | 9 | 1 | 329 | 1 | 364 | 4.9e-65 | 249.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84142.t1 | G7J6A1 | 98.2 | 329 | 6 | 0 | 1 | 329 | 1 | 329 | 1.2e-149 | 538.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene84142.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050298 | MS.gene84142 | 0.816385 | 5.68E-52 | -1.69E-46 |
| MS.gene050584 | MS.gene84142 | 0.800813 | 1.21E-48 | -1.69E-46 |
| MS.gene050585 | MS.gene84142 | 0.823193 | 1.58E-53 | -1.69E-46 |
| MS.gene050587 | MS.gene84142 | 0.832237 | 1.06E-55 | -1.69E-46 |
| MS.gene052142 | MS.gene84142 | 0.844464 | 7.44E-59 | -1.69E-46 |
| MS.gene053383 | MS.gene84142 | 0.812436 | 4.24E-51 | -1.69E-46 |
| MS.gene05456 | MS.gene84142 | 0.815145 | 1.07E-51 | -1.69E-46 |
| MS.gene057881 | MS.gene84142 | 0.82479 | 6.67E-54 | -1.69E-46 |
| MS.gene060691 | MS.gene84142 | 0.800725 | 1.26E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84142.t1 | MTR_3g090850 | 98.176 | 329 | 6 | 0 | 1 | 329 | 1 | 329 | 0.0 | 652 |
| MS.gene84142.t1 | MTR_1g028470 | 61.468 | 327 | 74 | 13 | 5 | 328 | 15 | 292 | 3.32e-108 | 317 |
| MS.gene84142.t1 | MTR_2g022280 | 48.684 | 228 | 74 | 3 | 101 | 328 | 1 | 185 | 1.36e-62 | 197 |
| MS.gene84142.t1 | MTR_0194s0050 | 39.015 | 264 | 124 | 5 | 63 | 326 | 150 | 376 | 9.45e-50 | 170 |
| MS.gene84142.t1 | MTR_3g099620 | 35.341 | 249 | 121 | 7 | 77 | 324 | 96 | 305 | 1.77e-37 | 136 |
| MS.gene84142.t1 | MTR_1g082480 | 36.441 | 236 | 100 | 5 | 99 | 327 | 134 | 326 | 3.00e-36 | 134 |
| MS.gene84142.t1 | MTR_7g113830 | 31.544 | 298 | 158 | 7 | 30 | 326 | 49 | 301 | 6.58e-36 | 132 |
| MS.gene84142.t1 | MTR_8g066770 | 37.563 | 197 | 82 | 3 | 99 | 295 | 112 | 267 | 6.84e-36 | 132 |
| MS.gene84142.t1 | MTR_1g082480 | 36.530 | 219 | 90 | 4 | 99 | 311 | 134 | 309 | 3.32e-33 | 125 |
| MS.gene84142.t1 | MTR_5g064950 | 30.034 | 293 | 157 | 8 | 19 | 309 | 23 | 269 | 1.76e-31 | 120 |
| MS.gene84142.t1 | MTR_5g064950 | 30.034 | 293 | 157 | 8 | 19 | 309 | 23 | 269 | 4.64e-31 | 119 |
| MS.gene84142.t1 | MTR_8g024210 | 75.000 | 48 | 12 | 0 | 99 | 146 | 179 | 226 | 2.29e-19 | 88.2 |
| MS.gene84142.t1 | MTR_8g024210 | 41.758 | 91 | 51 | 2 | 239 | 328 | 269 | 358 | 2.88e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84142.t1 | AT5G53210 | 57.068 | 382 | 93 | 13 | 1 | 329 | 1 | 364 | 1.33e-112 | 331 |
| MS.gene84142.t1 | AT5G53210 | 54.420 | 362 | 94 | 13 | 1 | 309 | 1 | 344 | 3.32e-95 | 286 |
| MS.gene84142.t1 | AT3G06120 | 44.737 | 228 | 90 | 3 | 101 | 328 | 1 | 192 | 5.27e-58 | 186 |
| MS.gene84142.t1 | AT3G24140 | 39.544 | 263 | 114 | 6 | 70 | 328 | 172 | 393 | 6.33e-48 | 166 |
| MS.gene84142.t1 | AT3G24140 | 56.122 | 98 | 37 | 2 | 70 | 167 | 172 | 263 | 2.66e-28 | 113 |
| MS.gene84142.t1 | AT3G24140 | 48.913 | 92 | 46 | 1 | 237 | 328 | 303 | 393 | 7.57e-18 | 84.0 |
| MS.gene84142.t1 | AT4G01460 | 67.188 | 64 | 21 | 0 | 99 | 162 | 113 | 176 | 5.48e-24 | 100 |
| MS.gene84142.t1 | AT4G01460 | 67.188 | 64 | 21 | 0 | 99 | 162 | 113 | 176 | 5.48e-24 | 100 |
| MS.gene84142.t1 | AT5G46690 | 33.051 | 236 | 104 | 6 | 99 | 317 | 86 | 284 | 2.99e-23 | 98.6 |
| MS.gene84142.t1 | AT1G22490 | 64.062 | 64 | 23 | 0 | 99 | 162 | 113 | 176 | 3.05e-23 | 98.2 |
| MS.gene84142.t1 | AT1G72210 | 31.441 | 229 | 113 | 6 | 99 | 326 | 123 | 308 | 3.50e-23 | 98.2 |
| MS.gene84142.t1 | AT5G46690 | 34.463 | 177 | 74 | 4 | 99 | 269 | 86 | 226 | 6.20e-23 | 97.1 |
| MS.gene84142.t1 | AT1G22490 | 64.062 | 64 | 23 | 0 | 99 | 162 | 113 | 176 | 6.36e-23 | 97.4 |
| MS.gene84142.t1 | AT1G72210 | 66.102 | 59 | 20 | 0 | 99 | 157 | 123 | 181 | 2.91e-22 | 95.5 |
| MS.gene84142.t1 | AT3G61950 | 53.247 | 77 | 34 | 1 | 99 | 173 | 125 | 201 | 1.44e-21 | 93.2 |
| MS.gene84142.t1 | AT3G61950 | 53.247 | 77 | 34 | 1 | 99 | 173 | 125 | 201 | 1.86e-21 | 93.2 |
| MS.gene84142.t1 | AT3G61950 | 53.247 | 77 | 34 | 1 | 99 | 173 | 176 | 252 | 3.99e-21 | 92.8 |
| MS.gene84142.t1 | AT3G61950 | 53.247 | 77 | 34 | 1 | 99 | 173 | 176 | 252 | 4.41e-21 | 92.8 |
| MS.gene84142.t1 | AT2G46810 | 60.317 | 63 | 25 | 0 | 99 | 161 | 119 | 181 | 7.16e-21 | 91.3 |
| MS.gene84142.t1 | AT2G46810 | 60.317 | 63 | 25 | 0 | 99 | 161 | 119 | 181 | 1.24e-20 | 91.3 |
| MS.gene84142.t1 | AT2G46810 | 60.317 | 63 | 25 | 0 | 99 | 161 | 179 | 241 | 1.99e-20 | 90.9 |
| MS.gene84142.t1 | AT2G46810 | 60.317 | 63 | 25 | 0 | 99 | 161 | 191 | 253 | 2.33e-20 | 90.9 |
| MS.gene84142.t1 | AT5G65320 | 59.016 | 61 | 25 | 0 | 99 | 159 | 100 | 160 | 1.70e-16 | 78.6 |
| MS.gene84142.t1 | AT5G65320 | 59.016 | 61 | 25 | 0 | 99 | 159 | 100 | 160 | 2.38e-16 | 78.6 |
Find 50 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAAGACAGAACAGAATT+TGG | 0.163384 | 3.1:+72801577 | MS.gene84142:CDS |
| TGATGATCTCTTTGCCATTT+TGG | 0.180476 | 3.1:+72801606 | MS.gene84142:CDS |
| ATGTAGCTTTGTTGCATTCT+TGG | 0.204975 | 3.1:-72804040 | None:intergenic |
| CTAGTTGGTTGTGGAGTTCT+TGG | 0.246531 | 3.1:-72804007 | None:intergenic |
| TGTGGAGTTCTTGGACTAAT+TGG | 0.288248 | 3.1:-72803998 | None:intergenic |
| TTCTTTGTTTCTTAGCTTCA+AGG | 0.307021 | 3.1:-72803877 | None:intergenic |
| GAAGTGACCTCATTCTCTTT+TGG | 0.319139 | 3.1:-72801685 | None:intergenic |
| GGAGATCAAGCATCAATAAT+TGG | 0.321601 | 3.1:+72803809 | MS.gene84142:CDS |
| GTTTCTTAGCTTCAAGGGCT+TGG | 0.330395 | 3.1:-72803871 | None:intergenic |
| TGTTGCATTCTTGGCTTGTA+AGG | 0.333897 | 3.1:-72804031 | None:intergenic |
| CTTGGACTTGGAACTAATCT+TGG | 0.340912 | 3.1:-72803923 | None:intergenic |
| AACTTGAAACTGAACCTAAA+AGG | 0.343348 | 3.1:+72801764 | MS.gene84142:CDS |
| AAGTTTAGTCTTGGACTTAG+AGG | 0.354427 | 3.1:-72803974 | None:intergenic |
| ATCTTCTAGACTCTCCAAAA+TGG | 0.357616 | 3.1:-72801620 | None:intergenic |
| GGACTTAGTGGTGAAGGTCT+TGG | 0.391894 | 3.1:-72803941 | None:intergenic |
| ACTGTTTCTCAACGAATTCC+AGG | 0.392508 | 3.1:+72804205 | MS.gene84142:CDS |
| CTTGGCTTGTAAGGACTAGT+TGG | 0.398269 | 3.1:-72804022 | None:intergenic |
| CTAATTGGCAAGTTTAGTCT+TGG | 0.398977 | 3.1:-72803983 | None:intergenic |
| TCATATAAGCTTTCTTCCAT+TGG | 0.406925 | 3.1:-72801550 | None:intergenic |
| TTGACCTCCACGTCAGCAAT+AGG | 0.436432 | 3.1:-72804154 | None:intergenic |
| ATCTGTTCCTCAAGCAAAGA+TGG | 0.472890 | 3.1:-72801805 | None:intergenic |
| TCTTTGTTTCTTAGCTTCAA+GGG | 0.473972 | 3.1:-72803876 | None:intergenic |
| TTTCTTGGACTTAGTGGTGA+AGG | 0.477916 | 3.1:-72803947 | None:intergenic |
| GAGGAAGTAGAGGAACTAGT+AGG | 0.492572 | 3.1:-72804088 | None:intergenic |
| CAGTGCTGATGGACAACAAA+GGG | 0.493882 | 3.1:+72801831 | MS.gene84142:CDS |
| GTAGAGGAACTAGTAGGAGA+TGG | 0.502378 | 3.1:-72804082 | None:intergenic |
| ATAATCTTCAAAGCTTGTCC+TGG | 0.509002 | 3.1:-72804223 | None:intergenic |
| GGTCACTTCGACATCGAGAT+TGG | 0.509922 | 3.1:+72801699 | MS.gene84142:CDS |
| AGTGGTGAAGGTCTTGGACT+TGG | 0.521437 | 3.1:-72803935 | None:intergenic |
| CAAGTTCTTCAGCACTCAGT+TGG | 0.524170 | 3.1:-72804779 | None:intergenic |
| TTGTAAGGACTAGTTGGTTG+TGG | 0.524571 | 3.1:-72804016 | None:intergenic |
| TACTACTCCAAAAGAGAATG+AGG | 0.530957 | 3.1:+72801678 | MS.gene84142:CDS |
| GTTGAACTCCTTCACTATCA+AGG | 0.535634 | 3.1:+72804315 | MS.gene84142:CDS |
| CTAGTAGGAGATGGATCAAG+AGG | 0.552519 | 3.1:-72804073 | None:intergenic |
| GAACAGATTAACAGTGCTGA+TGG | 0.553866 | 3.1:+72801820 | MS.gene84142:CDS |
| GCTTACACCATCTTTGCTTG+AGG | 0.567717 | 3.1:+72801798 | MS.gene84142:CDS |
| CTCAGAATCTTGCAGCGAAG+AGG | 0.567938 | 3.1:-72801737 | None:intergenic |
| TTTAGTCTTGGACTTAGAGG+TGG | 0.583231 | 3.1:-72803971 | None:intergenic |
| ATCATTGACTGAGGAAGTAG+AGG | 0.588412 | 3.1:-72804098 | None:intergenic |
| GTCTCCTATTGCTGACGTGG+AGG | 0.609724 | 3.1:+72804150 | MS.gene84142:CDS |
| TTACTGTGGAGCGCAACAGA+AGG | 0.616988 | 3.1:+72801863 | MS.gene84142:CDS |
| GCTTCAACTTGATTGATGAG+AGG | 0.624063 | 3.1:-72801655 | None:intergenic |
| AAAGTCTCCTATTGCTGACG+TGG | 0.628049 | 3.1:+72804147 | MS.gene84142:CDS |
| AAGTACTATTAATGTTAACA+TGG | 0.635453 | 3.1:-72804279 | None:intergenic |
| TAAACGTACCTTGATAGTGA+AGG | 0.635932 | 3.1:-72804323 | None:intergenic |
| ATTGATGTTATCATTGACTG+AGG | 0.636012 | 3.1:-72804107 | None:intergenic |
| GATCAAGCATCAATAATTGG+AGG | 0.643294 | 3.1:+72803812 | MS.gene84142:CDS |
| GATAGTGAAGGAGTTCAACA+TGG | 0.664739 | 3.1:-72804311 | None:intergenic |
| AAGGGTTTCTCATATTACTG+TGG | 0.670712 | 3.1:+72801849 | MS.gene84142:CDS |
| ACAGTGCTGATGGACAACAA+AGG | 0.726440 | 3.1:+72801830 | MS.gene84142:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGAAAAGTATATAAATAAA+GGG | + | chr3.1:72802920-72802939 | MS.gene84142:intron | 10.0% |
| !!! | ATTTTAAATAAAATAGCATT+TGG | + | chr3.1:72802089-72802108 | MS.gene84142:intron | 10.0% |
| !!! | TAAGAAAAGTATATAAATAA+AGG | + | chr3.1:72802919-72802938 | MS.gene84142:intron | 10.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | + | chr3.1:72802615-72802634 | MS.gene84142:intron | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | - | chr3.1:72802634-72802615 | None:intergenic | 15.0% |
| !! | AATCTTAGAAAAAAAAATGA+TGG | - | chr3.1:72802691-72802710 | None:intergenic | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | + | chr3.1:72802616-72802635 | MS.gene84142:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | - | chr3.1:72802635-72802616 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | + | chr3.1:72802424-72802443 | MS.gene84142:intron | 15.0% |
| !! | ATCTTAGAAAAAAAAATGAT+GGG | - | chr3.1:72802690-72802709 | None:intergenic | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | + | chr3.1:72803246-72803265 | MS.gene84142:intron | 15.0% |
| !! | TAATGCAACTAATTTAATTA+GGG | + | chr3.1:72803788-72803807 | MS.gene84142:intron | 15.0% |
| !! | TATATATGTCAAAAAGTAAA+TGG | + | chr3.1:72804505-72804524 | MS.gene84142:intron | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | + | chr3.1:72803245-72803264 | MS.gene84142:intron | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | - | chr3.1:72802543-72802524 | None:intergenic | 15.0% |
| !!! | AATTTTGCAATAATTTTTTG+CGG | + | chr3.1:72802459-72802478 | MS.gene84142:intron | 15.0% |
| !!! | AGAAAAGTATATAAATAAAG+GGG | + | chr3.1:72802921-72802940 | MS.gene84142:intron | 15.0% |
| !!! | TTAAGTTTAAAATTGTACAT+TGG | - | chr3.1:72803033-72803052 | None:intergenic | 15.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | + | chr3.1:72802554-72802573 | MS.gene84142:intron | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | + | chr3.1:72802944-72802963 | MS.gene84142:intron | 20.0% |
| !! | AAGTACTATTAATGTTAACA+TGG | - | chr3.1:72804282-72804301 | None:intergenic | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | + | chr3.1:72803278-72803297 | MS.gene84142:intron | 20.0% |
| !! | ATAGTGCAAATATTCTAAAT+AGG | + | chr3.1:72803195-72803214 | MS.gene84142:intron | 20.0% |
| !! | ATTAAATTAGTTGCATTAGA+TGG | - | chr3.1:72803786-72803805 | None:intergenic | 20.0% |
| !! | CCAGTAATATATTATAAGAA+TGG | + | chr3.1:72804702-72804721 | MS.gene84142:intron | 20.0% |
| !! | CCATTCTTATAATATATTAC+TGG | - | chr3.1:72804705-72804724 | None:intergenic | 20.0% |
| !! | CTAATGCAACTAATTTAATT+AGG | + | chr3.1:72803787-72803806 | MS.gene84142:intron | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | + | chr3.1:72803279-72803298 | MS.gene84142:intron | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | + | chr3.1:72802553-72802572 | MS.gene84142:intron | 20.0% |
| !! | TTAAATTAGTTGCATTAGAT+GGG | - | chr3.1:72803785-72803804 | None:intergenic | 20.0% |
| !!! | AAACACGTTAAAATCATTTT+TGG | + | chr3.1:72802127-72802146 | MS.gene84142:intron | 20.0% |
| !!! | AACACGTTAAAATCATTTTT+GGG | + | chr3.1:72802128-72802147 | MS.gene84142:intron | 20.0% |
| !!! | ATGGTTTGTAATTAATACTA+TGG | + | chr3.1:72804721-72804740 | MS.gene84142:intron | 20.0% |
| !!! | TAAGTGTATATTTGTTTCTA+TGG | + | chr3.1:72801950-72801969 | MS.gene84142:intron | 20.0% |
| !!! | TATACTTGATTTTATTGTGA+TGG | - | chr3.1:72804419-72804438 | None:intergenic | 20.0% |
| ! | AAAAAATGAGTCAGTTATTC+CGG | + | chr3.1:72803328-72803347 | MS.gene84142:intron | 25.0% |
| ! | AGTGCAGAAAAACAAAATTA+GGG | + | chr3.1:72802587-72802606 | MS.gene84142:intron | 25.0% |
| ! | ATTTAAGCACAATGAAAACA+TGG | - | chr3.1:72802751-72802770 | None:intergenic | 25.0% |
| ! | CTAAATAGGTCAAGTAATAT+GGG | + | chr3.1:72803209-72803228 | MS.gene84142:intron | 25.0% |
| ! | CTATTGAAGAGTAAAAAGAA+AGG | - | chr3.1:72804383-72804402 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | + | chr3.1:72802943-72802962 | MS.gene84142:intron | 25.0% |
| ! | TAAATTAGTTGCATTAGATG+GGG | - | chr3.1:72803784-72803803 | None:intergenic | 25.0% |
| ! | TAACAAGTCAATTACTTACT+GGG | + | chr3.1:72802771-72802790 | MS.gene84142:intron | 25.0% |
| ! | TATATAAATAAAGGGGAAAG+TGG | + | chr3.1:72802928-72802947 | MS.gene84142:intron | 25.0% |
| ! | TCTAAATAGGTCAAGTAATA+TGG | + | chr3.1:72803208-72803227 | MS.gene84142:intron | 25.0% |
| ! | TTAACAAGTCAATTACTTAC+TGG | + | chr3.1:72802770-72802789 | MS.gene84142:intron | 25.0% |
| !! | CTTTCTTTTTACTCTTCAAT+AGG | + | chr3.1:72804381-72804400 | MS.gene84142:intron | 25.0% |
| !! | TTGATGTACTTTAAAAGTAG+TGG | + | chr3.1:72804529-72804548 | MS.gene84142:intron | 25.0% |
| !!! | AATCAAACTTTGTTTTAGCA+GGG | - | chr3.1:72802264-72802283 | None:intergenic | 25.0% |
| !!! | ATTTGATTACTTTTTGTGCA+CGG | + | chr3.1:72803573-72803592 | MS.gene84142:intron | 25.0% |
| !!! | TAATCAAACTTTGTTTTAGC+AGG | - | chr3.1:72802265-72802284 | None:intergenic | 25.0% |
| AAAAATGAGTCAGTTATTCC+GGG | + | chr3.1:72803329-72803348 | MS.gene84142:intron | 30.0% | |
| AACAAGTCAATTACTTACTG+GGG | + | chr3.1:72802772-72802791 | MS.gene84142:intron | 30.0% | |
| AACTTGAAACTGAACCTAAA+AGG | + | chr3.1:72801764-72801783 | MS.gene84142:CDS | 30.0% | |
| ACAGCAACAAATTATAATGG+AGG | - | chr3.1:72803381-72803400 | None:intergenic | 30.0% | |
| AGAAAAATAGAGTCAAAGCA+TGG | + | chr3.1:72803165-72803184 | MS.gene84142:intron | 30.0% | |
| CAAGATTAGAACACTATGAA+AGG | + | chr3.1:72802327-72802346 | MS.gene84142:intron | 30.0% | |
| CAGTGCAGAAAAACAAAATT+AGG | + | chr3.1:72802586-72802605 | MS.gene84142:intron | 30.0% | |
| GCTACTTATGTGTTCAATTT+AGG | + | chr3.1:72804678-72804697 | MS.gene84142:intron | 30.0% | |
| TAAACTTGCACATCTAAGTA+TGG | - | chr3.1:72802844-72802863 | None:intergenic | 30.0% | |
| TACTTAGATGTGCAAGTTTA+AGG | + | chr3.1:72802844-72802863 | MS.gene84142:intron | 30.0% | |
| TATCAAGGTACGTTTATTCT+TGG | + | chr3.1:72804330-72804349 | MS.gene84142:intron | 30.0% | |
| TCAACTAGGTCAAGTAATAT+GGG | - | chr3.1:72802996-72803015 | None:intergenic | 30.0% | |
| TGAGTGATTATGAAGGTTTA+TGG | + | chr3.1:72802799-72802818 | MS.gene84142:intron | 30.0% | |
| TTTGAAGACAGAACAGAATT+TGG | + | chr3.1:72801577-72801596 | MS.gene84142:CDS | 30.0% | |
| ! | ACAGTTTTCAAAAGAACATG+AGG | - | chr3.1:72804190-72804209 | None:intergenic | 30.0% |
| ! | ATGTTAAAGATCACGTTTTG+AGG | + | chr3.1:72802034-72802053 | MS.gene84142:intron | 30.0% |
| ! | ATTGATGTTATCATTGACTG+AGG | - | chr3.1:72804110-72804129 | None:intergenic | 30.0% |
| ! | TCTTTGTTTCTTAGCTTCAA+GGG | - | chr3.1:72803879-72803898 | None:intergenic | 30.0% |
| ! | TTCTTTGTTTCTTAGCTTCA+AGG | - | chr3.1:72803880-72803899 | None:intergenic | 30.0% |
| ! | TTGAAATGGGTCAGTTATTT+TGG | + | chr3.1:72803292-72803311 | MS.gene84142:intron | 30.0% |
| !! | CATTATAATTTGTTGCTGTG+GGG | + | chr3.1:72803382-72803401 | MS.gene84142:intron | 30.0% |
| !! | CCATTATAATTTGTTGCTGT+GGG | + | chr3.1:72803381-72803400 | MS.gene84142:intron | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | chr3.1:72802647-72802666 | MS.gene84142:intron | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | - | chr3.1:72802666-72802647 | None:intergenic | 30.0% |
| !! | TCCATTATAATTTGTTGCTG+TGG | + | chr3.1:72803380-72803399 | MS.gene84142:intron | 30.0% |
| !! | TGAAATGGGTCAGTTATTTT+GGG | + | chr3.1:72803293-72803312 | MS.gene84142:intron | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | chr3.1:72802646-72802665 | MS.gene84142:intron | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | - | chr3.1:72802665-72802646 | None:intergenic | 30.0% |
| AAGGGTTTCTCATATTACTG+TGG | + | chr3.1:72801849-72801868 | MS.gene84142:CDS | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | + | chr3.1:72802631-72802650 | MS.gene84142:intron | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | - | chr3.1:72802650-72802631 | None:intergenic | 35.0% | |
| ATAATCTTCAAAGCTTGTCC+TGG | - | chr3.1:72804226-72804245 | None:intergenic | 35.0% | |
| ATAGGTCAAGTAATATGGGA+CGG | + | chr3.1:72803213-72803232 | MS.gene84142:intron | 35.0% | |
| ATCTTCTAGACTCTCCAAAA+TGG | - | chr3.1:72801623-72801642 | None:intergenic | 35.0% | |
| CAAAGTAGGTCAATTATACC+GGG | - | chr3.1:72802884-72802903 | None:intergenic | 35.0% | |
| CCAAAGTAGGTCAATTATAC+CGG | - | chr3.1:72802885-72802904 | None:intergenic | 35.0% | |
| CCCACAGCAACAAATTATAA+TGG | - | chr3.1:72803384-72803403 | None:intergenic | 35.0% | |
| CTAATTGGCAAGTTTAGTCT+TGG | - | chr3.1:72803986-72804005 | None:intergenic | 35.0% | |
| GATCAAGCATCAATAATTGG+AGG | + | chr3.1:72803812-72803831 | MS.gene84142:CDS | 35.0% | |
| GGAGATCAAGCATCAATAAT+TGG | + | chr3.1:72803809-72803828 | MS.gene84142:CDS | 35.0% | |
| GTAGTTATGCAATCAATGCA+TGG | + | chr3.1:72803626-72803645 | MS.gene84142:intron | 35.0% | |
| GTCAACTAGGTCAAGTAATA+TGG | - | chr3.1:72802997-72803016 | None:intergenic | 35.0% | |
| TACTACTCCAAAAGAGAATG+AGG | + | chr3.1:72801678-72801697 | MS.gene84142:CDS | 35.0% | |
| TCACAGTAAAAAACTGCACT+AGG | - | chr3.1:72804474-72804493 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | - | chr3.1:72802898-72802917 | None:intergenic | 35.0% | |
| TGAGGACAAATGTCTGAATA+AGG | - | chr3.1:72804614-72804633 | None:intergenic | 35.0% | |
| ! | ACCCTTTTGACATAAAAGCA+AGG | - | chr3.1:72801931-72801950 | None:intergenic | 35.0% |
| ! | ATACGTCTTTTCAGCAAATG+AGG | - | chr3.1:72804632-72804651 | None:intergenic | 35.0% |
| ! | ATGAGCACTTGTCTGTTTTA+AGG | + | chr3.1:72801896-72801915 | MS.gene84142:CDS | 35.0% |
| !! | AAGTTTAGTCTTGGACTTAG+AGG | - | chr3.1:72803977-72803996 | None:intergenic | 35.0% |
| !! | ATGTAGCTTTGTTGCATTCT+TGG | - | chr3.1:72804043-72804062 | None:intergenic | 35.0% |
| !! | GCATTGATTGCATAACTACA+AGG | - | chr3.1:72803625-72803644 | None:intergenic | 35.0% |
| !! | GCCTTGCTTTTATGTCAAAA+GGG | + | chr3.1:72801927-72801946 | MS.gene84142:CDS | 35.0% |
| !! | TAAACGTACCTTGATAGTGA+AGG | - | chr3.1:72804326-72804345 | None:intergenic | 35.0% |
| !! | TGATGATCTCTTTGCCATTT+TGG | + | chr3.1:72801606-72801625 | MS.gene84142:CDS | 35.0% |
| !! | TGCCTTGCTTTTATGTCAAA+AGG | + | chr3.1:72801926-72801945 | MS.gene84142:CDS | 35.0% |
| AAAAAGAGCTGCGTGAATGT+AGG | - | chr3.1:72803408-72803427 | None:intergenic | 40.0% | |
| ATATTTCACTGCACCTCTCT+GGG | + | chr3.1:72804558-72804577 | MS.gene84142:intron | 40.0% | |
| ATCTGTTCCTCAAGCAAAGA+TGG | - | chr3.1:72801808-72801827 | None:intergenic | 40.0% | |
| CCGGTATAATTGACCTACTT+TGG | + | chr3.1:72802882-72802901 | MS.gene84142:intron | 40.0% | |
| CTAGGTCAAGTAATATGGGA+CGG | - | chr3.1:72802992-72803011 | None:intergenic | 40.0% | |
| CTTGGACTTGGAACTAATCT+TGG | - | chr3.1:72803926-72803945 | None:intergenic | 40.0% | |
| GATAGTGAAGGAGTTCAACA+TGG | - | chr3.1:72804314-72804333 | None:intergenic | 40.0% | |
| GATGCATGTTACATGTACCT+TGG | - | chr3.1:72804587-72804606 | None:intergenic | 40.0% | |
| GCTTCAACTTGATTGATGAG+AGG | - | chr3.1:72801658-72801677 | None:intergenic | 40.0% | |
| GGGTCAATGAGTGATTATGA+AGG | + | chr3.1:72802792-72802811 | MS.gene84142:intron | 40.0% | |
| GTTGAACTCCTTCACTATCA+AGG | + | chr3.1:72804315-72804334 | MS.gene84142:CDS | 40.0% | |
| TATATTTCACTGCACCTCTC+TGG | + | chr3.1:72804557-72804576 | MS.gene84142:intron | 40.0% | |
| TGCAATCAATGCATGGAAGA+TGG | + | chr3.1:72803633-72803652 | MS.gene84142:intron | 40.0% | |
| TGCACATCTAAGTATGGTAG+AGG | - | chr3.1:72802838-72802857 | None:intergenic | 40.0% | |
| TGTGGAGTTCTTGGACTAAT+TGG | - | chr3.1:72804001-72804020 | None:intergenic | 40.0% | |
| TTCCCCGAGAATAGAAAATC+CGG | - | chr3.1:72803601-72803620 | None:intergenic | 40.0% | |
| TTTCTTGGACTTAGTGGTGA+AGG | - | chr3.1:72803950-72803969 | None:intergenic | 40.0% | |
| ! | ACTGTTTCTCAACGAATTCC+AGG | + | chr3.1:72804205-72804224 | MS.gene84142:CDS | 40.0% |
| ! | AGCTTCTGTCTCTTCCTTTT+AGG | - | chr3.1:72801781-72801800 | None:intergenic | 40.0% |
| ! | ATCATTGACTGAGGAAGTAG+AGG | - | chr3.1:72804101-72804120 | None:intergenic | 40.0% |
| ! | GAACAGATTAACAGTGCTGA+TGG | + | chr3.1:72801820-72801839 | MS.gene84142:CDS | 40.0% |
| ! | GAAGTGACCTCATTCTCTTT+TGG | - | chr3.1:72801688-72801707 | None:intergenic | 40.0% |
| !! | CGGAGAGAGTATCAAAGATA+TGG | + | chr3.1:72803353-72803372 | MS.gene84142:intron | 40.0% |
| !! | TGTTGCATTCTTGGCTTGTA+AGG | - | chr3.1:72804034-72804053 | None:intergenic | 40.0% |
| !! | TTGTAAGGACTAGTTGGTTG+TGG | - | chr3.1:72804019-72804038 | None:intergenic | 40.0% |
| !! | TTTAGTCTTGGACTTAGAGG+TGG | - | chr3.1:72803974-72803993 | None:intergenic | 40.0% |
| AAAGTCTCCTATTGCTGACG+TGG | + | chr3.1:72804147-72804166 | MS.gene84142:CDS | 45.0% | |
| ATGAGTCAGTTATTCCGGGA+CGG | + | chr3.1:72803333-72803352 | MS.gene84142:intron | 45.0% | |
| ATGGTAGAGGTCACTTGTCT+AGG | - | chr3.1:72802825-72802844 | None:intergenic | 45.0% | |
| CAAGTTCTTCAGCACTCAGT+TGG | - | chr3.1:72804782-72804801 | None:intergenic | 45.0% | |
| CATACGTGACAGAGTCAACT+AGG | - | chr3.1:72803010-72803029 | None:intergenic | 45.0% | |
| CTAGTAGGAGATGGATCAAG+AGG | - | chr3.1:72804076-72804095 | None:intergenic | 45.0% | |
| CTAGTTGGTTGTGGAGTTCT+TGG | - | chr3.1:72804010-72804029 | None:intergenic | 45.0% | |
| GAGGAAGTAGAGGAACTAGT+AGG | - | chr3.1:72804091-72804110 | None:intergenic | 45.0% | |
| GATGGGGTGCATAAAGGAAA+TGG | - | chr3.1:72803768-72803787 | None:intergenic | 45.0% | |
| GCATTAGATGGGGTGCATAA+AGG | - | chr3.1:72803774-72803793 | None:intergenic | 45.0% | |
| GCTTACACCATCTTTGCTTG+AGG | + | chr3.1:72801798-72801817 | MS.gene84142:CDS | 45.0% | |
| GTAGAGGAACTAGTAGGAGA+TGG | - | chr3.1:72804085-72804104 | None:intergenic | 45.0% | |
| GTAGGTCAATTATACCGGGA+CGG | - | chr3.1:72802880-72802899 | None:intergenic | 45.0% | |
| GTCAAGTAATATGGGACGGA+GGG | + | chr3.1:72803217-72803236 | MS.gene84142:intron | 45.0% | |
| GTCAAGTAATATGGGACGGA+GGG | - | chr3.1:72803236-72803217 | None:intergenic | 45.0% | |
| GTTTCTTAGCTTCAAGGGCT+TGG | - | chr3.1:72803874-72803893 | None:intergenic | 45.0% | |
| TATTTCACTGCACCTCTCTG+GGG | + | chr3.1:72804559-72804578 | MS.gene84142:intron | 45.0% | |
| TCCCCGAGAATAGAAAATCC+GGG | - | chr3.1:72803600-72803619 | None:intergenic | 45.0% | |
| ! | ACCCGGATTTTCTATTCTCG+GGG | + | chr3.1:72803596-72803615 | MS.gene84142:intron | 45.0% |
| ! | GACCCGGATTTTCTATTCTC+GGG | + | chr3.1:72803595-72803614 | MS.gene84142:intron | 45.0% |
| ! | GGACCCGGATTTTCTATTCT+CGG | + | chr3.1:72803594-72803613 | MS.gene84142:intron | 45.0% |
| ! | GGACTTAGAGGTGGTTTTCT+TGG | - | chr3.1:72803965-72803984 | None:intergenic | 45.0% |
| ! | GGTGGTTTTCTTGGACTTAG+TGG | - | chr3.1:72803956-72803975 | None:intergenic | 45.0% |
| !! | ACAGTGCTGATGGACAACAA+AGG | + | chr3.1:72801830-72801849 | MS.gene84142:CDS | 45.0% |
| !! | CAGTGCTGATGGACAACAAA+GGG | + | chr3.1:72801831-72801850 | MS.gene84142:CDS | 45.0% |
| !! | CTTGGCTTGTAAGGACTAGT+TGG | - | chr3.1:72804025-72804044 | None:intergenic | 45.0% |
| !!! | TTACTTTTTGTGCACGGACC+CGG | + | chr3.1:72803579-72803598 | MS.gene84142:intron | 45.0% |
| !! | ATTAATTTATTTATATAGAT+TGG | + | chr3.1:72804747-72804766 | MS.gene84142:intron | 5.0% |
| !!! | ATAAGTAAATTTTTTTTTAT+AGG | - | chr3.1:72802232-72802251 | None:intergenic | 5.0% |
| !!! | TAAGTAAATTTTTTTTTATA+GGG | - | chr3.1:72802231-72802250 | None:intergenic | 5.0% |
| AGTGGTGAAGGTCTTGGACT+TGG | - | chr3.1:72803938-72803957 | None:intergenic | 50.0% | |
| CTCAGAATCTTGCAGCGAAG+AGG | - | chr3.1:72801740-72801759 | None:intergenic | 50.0% | |
| CTTTGATACTCTCTCCGTCC+CGG | - | chr3.1:72803350-72803369 | None:intergenic | 50.0% | |
| GGACTTAGTGGTGAAGGTCT+TGG | - | chr3.1:72803944-72803963 | None:intergenic | 50.0% | |
| GGTCAAGTAATATGGGACGG+AGG | + | chr3.1:72803216-72803235 | MS.gene84142:intron | 50.0% | |
| GGTCAAGTAATATGGGACGG+AGG | - | chr3.1:72803235-72803216 | None:intergenic | 50.0% | |
| GGTCACTTCGACATCGAGAT+TGG | + | chr3.1:72801699-72801718 | MS.gene84142:CDS | 50.0% | |
| GTCAATTATACCGGGACGGA+GGG | - | chr3.1:72802876-72802895 | None:intergenic | 50.0% | |
| TTACTGTGGAGCGCAACAGA+AGG | + | chr3.1:72801863-72801882 | MS.gene84142:CDS | 50.0% | |
| TTGACCTCCACGTCAGCAAT+AGG | - | chr3.1:72804157-72804176 | None:intergenic | 50.0% | |
| ! | GACGTGGAGGTCAAGTTTTC+AGG | + | chr3.1:72804163-72804182 | MS.gene84142:CDS | 50.0% |
| AAGGTATACTCCCTCCGTCC+CGG | + | chr3.1:72802863-72802882 | MS.gene84142:intron | 55.0% | |
| GGTCAATTATACCGGGACGG+AGG | - | chr3.1:72802877-72802896 | None:intergenic | 55.0% | |
| GTCTCCTATTGCTGACGTGG+AGG | + | chr3.1:72804150-72804169 | MS.gene84142:CDS | 55.0% | |
| TGTACCTTGGCACCCCAGAG+AGG | - | chr3.1:72804574-72804593 | None:intergenic | 60.0% | |
| !! | TGCACCTCTCTGGGGTGCCA+AGG | + | chr3.1:72804567-72804586 | MS.gene84142:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 72801553 | 72804830 | 72801553 | ID=MS.gene84142 |
| chr3.1 | mRNA | 72801553 | 72804830 | 72801553 | ID=MS.gene84142.t1;Parent=MS.gene84142 |
| chr3.1 | exon | 72801553 | 72801948 | 72801553 | ID=MS.gene84142.t1.exon1;Parent=MS.gene84142.t1 |
| chr3.1 | CDS | 72801553 | 72801948 | 72801553 | ID=cds.MS.gene84142.t1;Parent=MS.gene84142.t1 |
| chr3.1 | exon | 72803809 | 72804336 | 72803809 | ID=MS.gene84142.t1.exon2;Parent=MS.gene84142.t1 |
| chr3.1 | CDS | 72803809 | 72804336 | 72803809 | ID=cds.MS.gene84142.t1;Parent=MS.gene84142.t1 |
| chr3.1 | exon | 72804765 | 72804830 | 72804765 | ID=MS.gene84142.t1.exon3;Parent=MS.gene84142.t1 |
| chr3.1 | CDS | 72804765 | 72804830 | 72804765 | ID=cds.MS.gene84142.t1;Parent=MS.gene84142.t1 |
| Gene Sequence |
| Protein sequence |
