Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84234.t1 | XP_003592799.2 | 93.7 | 301 | 18 | 1 | 2 | 301 | 10 | 310 | 8.30E-148 | 533.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84234.t1 | Q9MAT6 | 60.8 | 301 | 88 | 8 | 18 | 300 | 20 | 308 | 4.4e-81 | 302.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84234.t1 | A0A072VSX7 | 93.7 | 301 | 18 | 1 | 2 | 301 | 10 | 310 | 6.0e-148 | 533.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049427 | MS.gene84234 | 0.825161 | 5.45E-54 | -1.69E-46 |
| MS.gene050301 | MS.gene84234 | 0.811168 | 8.01E-51 | -1.69E-46 |
| MS.gene050432 | MS.gene84234 | 0.810778 | 9.73E-51 | -1.69E-46 |
| MS.gene050783 | MS.gene84234 | 0.813055 | 3.11E-51 | -1.69E-46 |
| MS.gene051582 | MS.gene84234 | 0.821066 | 4.92E-53 | -1.69E-46 |
| MS.gene053107 | MS.gene84234 | 0.820748 | 5.82E-53 | -1.69E-46 |
| MS.gene057011 | MS.gene84234 | 0.813061 | 3.10E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 0 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAACATACAAAAGATT+AGG | + | 10997:12790-12809 | MS.gene84234:intergenic | 15.0% |
| !! | ATAAACAATACTAGTTATTA+TGG | + | 10997:12868-12887 | MS.gene84234:intergenic | 15.0% |
| !!! | AATAATAGATTTGTTCATAA+TGG | + | 10997:10883-10902 | MS.gene84234:intergenic | 15.0% |
| !!! | GATTATAATTTCAATTTTGT+TGG | - | 10997:10413-10432 | MS.gene84234:intron | 15.0% |
| !!! | TTAGTAGTTAATCTTATTTT+GGG | + | 10997:11167-11186 | MS.gene84234:intergenic | 15.0% |
| !!! | TTTACTTTTATTTTAAGATG+TGG | - | 10997:10186-10205 | MS.gene84234:CDS | 15.0% |
| !!! | TTTGTTTTTGAGAATATTTT+AGG | - | 10997:11214-11233 | MS.gene84234:intron | 15.0% |
| !! | AGATCATTAAAGATAGAAAA+TGG | - | 10997:10771-10790 | MS.gene84234:intron | 20.0% |
| !! | ATAAATTGGAAATTTCACTA+TGG | - | 10997:10993-11012 | MS.gene84234:intron | 20.0% |
| !! | ATTATGAGCTTACATTTAAT+GGG | - | 10997:12013-12032 | MS.gene84234:intron | 20.0% |
| !! | CAATCCTATATTAAGTTTAA+AGG | + | 10997:12648-12667 | MS.gene84234:intergenic | 20.0% |
| !! | TATGTTTAAATTGATGGAAA+GGG | - | 10997:11238-11257 | MS.gene84234:intron | 20.0% |
| !! | TATTATGAGCTTACATTTAA+TGG | - | 10997:12012-12031 | MS.gene84234:intron | 20.0% |
| !! | TCAATTCTCAAATAATGAAA+TGG | - | 10997:11621-11640 | MS.gene84234:intron | 20.0% |
| !! | TCATTATTTGAGAATTGAAA+TGG | + | 10997:11619-11638 | MS.gene84234:intergenic | 20.0% |
| !! | TTAGGTTATGTTTAAATTGA+TGG | - | 10997:11232-11251 | MS.gene84234:intron | 20.0% |
| !! | TTATGTTTAAATTGATGGAA+AGG | - | 10997:11237-11256 | MS.gene84234:intron | 20.0% |
| !! | TTCCAATTTATACATTAGAA+GGG | + | 10997:10984-11003 | MS.gene84234:intergenic | 20.0% |
| !! | TTGCAATTACAAAAAACATT+TGG | - | 10997:10289-10308 | MS.gene84234:CDS | 20.0% |
| !! | TTTCCAATTTATACATTAGA+AGG | + | 10997:10985-11004 | MS.gene84234:intergenic | 20.0% |
| !!! | ATTCTTTTGAATCATAACTT+TGG | - | 10997:10689-10708 | MS.gene84234:intron | 20.0% |
| !!! | GTTAGTAGTTAATCTTATTT+TGG | + | 10997:11168-11187 | MS.gene84234:intergenic | 20.0% |
| !!! | TAGTTTTCAATCTAGATATA+TGG | - | 10997:11745-11764 | MS.gene84234:intron | 20.0% |
| ! | AAACAATCAAACAATGGAAT+AGG | - | 10997:11662-11681 | MS.gene84234:intron | 25.0% |
| ! | AAATAGAAAGAATGGTTAAC+AGG | + | 10997:12756-12775 | MS.gene84234:intergenic | 25.0% |
| ! | AACAATCAAACAATGGAATA+GGG | - | 10997:11663-11682 | MS.gene84234:intron | 25.0% |
| ! | AATAGAAAGAATGGTTAACA+GGG | + | 10997:12755-12774 | MS.gene84234:intergenic | 25.0% |
| ! | AATTCGTAGTTTATAAATCC+AGG | + | 10997:10150-10169 | MS.gene84234:intergenic | 25.0% |
| ! | ACATTTATCACTAAATCTCT+CGG | + | 10997:12621-12640 | MS.gene84234:intergenic | 25.0% |
| ! | ATAACAGTAAGAGAAGTTAT+AGG | + | 10997:12840-12859 | MS.gene84234:intergenic | 25.0% |
| ! | ATGTTTAAATTGATGGAAAG+GGG | - | 10997:11239-11258 | MS.gene84234:intron | 25.0% |
| ! | ATTCGTAGTTTATAAATCCA+GGG | + | 10997:10149-10168 | MS.gene84234:intergenic | 25.0% |
| ! | ATTGTTTGATTGTTTCATTG+AGG | + | 10997:11657-11676 | MS.gene84234:intergenic | 25.0% |
| ! | CTATTTAACGATTAGAGAAA+TGG | + | 10997:11728-11747 | MS.gene84234:intergenic | 25.0% |
| ! | TAATATAGTATCTTTCTCCT+AGG | - | 10997:11785-11804 | MS.gene84234:intron | 25.0% |
| ! | TATTTGAGAATTGAAATGGT+AGG | + | 10997:11615-11634 | MS.gene84234:intergenic | 25.0% |
| ! | TCAAATTTCACTACTCTATA+GGG | + | 10997:11469-11488 | MS.gene84234:intergenic | 25.0% |
| ! | TCAATGAAACAATCAAACAA+TGG | - | 10997:11656-11675 | MS.gene84234:intron | 25.0% |
| ! | TCCAATTTATACATTAGAAG+GGG | + | 10997:10983-11002 | MS.gene84234:intergenic | 25.0% |
| ! | TCCACCTTTAAACTTAATAT+AGG | - | 10997:12641-12660 | MS.gene84234:intron | 25.0% |
| ! | TCCTATATTAAGTTTAAAGG+TGG | + | 10997:12645-12664 | MS.gene84234:intergenic | 25.0% |
| ! | TGCAAAGTTATACAAGTAAA+TGG | + | 10997:10274-10293 | MS.gene84234:intergenic | 25.0% |
| ! | TTCAAATTTCACTACTCTAT+AGG | + | 10997:11470-11489 | MS.gene84234:intergenic | 25.0% |
| !! | AAAGTACTAGAGTGAAAATT+GGG | - | 10997:12467-12486 | MS.gene84234:CDS | 25.0% |
| !! | ACTGATAATGTCCAAAATAT+AGG | - | 10997:10483-10502 | MS.gene84234:intron | 25.0% |
| !! | AGGTAAGTCAATTTTATCAA+TGG | + | 10997:11595-11614 | MS.gene84234:intergenic | 25.0% |
| !! | AGTTTTCAATTTTCCATCAA+CGG | - | 10997:10808-10827 | MS.gene84234:intron | 25.0% |
| !! | ATGATTTTCCATGACTTAAT+CGG | - | 10997:11809-11828 | MS.gene84234:intron | 25.0% |
| !! | GTTAACCATTCTTTCTATTT+TGG | - | 10997:12756-12775 | MS.gene84234:intron | 25.0% |
| !! | TAAGTCAATTTTATCAATGG+AGG | + | 10997:11592-11611 | MS.gene84234:intergenic | 25.0% |
| !! | TGATGGTCTTTTAAATCTAT+TGG | - | 10997:11846-11865 | MS.gene84234:intron | 25.0% |
| !! | TGCTATTTAGTACAAAATAG+CGG | - | 10997:11513-11532 | MS.gene84234:intron | 25.0% |
| !! | TGTAAGATTTGTGCTATTAT+AGG | + | 10997:12376-12395 | MS.gene84234:intergenic | 25.0% |
| !! | TTCAATTTCCTTTTTCTTAG+TGG | + | 10997:11190-11209 | MS.gene84234:intergenic | 25.0% |
| !!! | AAAAGTACTAGAGTGAAAAT+TGG | - | 10997:12466-12485 | MS.gene84234:CDS | 25.0% |
| !!! | AACATTTGGAATTTTATTGC+AGG | - | 10997:10303-10322 | MS.gene84234:CDS | 25.0% |
| !!! | AAGGAAGTTTTGTTTTCATT+TGG | + | 10997:12264-12283 | MS.gene84234:intergenic | 25.0% |
| !!! | ACATTTTAAGTTTAGTATCG+TGG | - | 10997:12393-12412 | MS.gene84234:CDS | 25.0% |
| !!! | ATTCTTTCTATTTTGGAAGT+GGG | - | 10997:12763-12782 | MS.gene84234:intron | 25.0% |
| !!! | GTCCTTTTGATGATAAAATA+AGG | + | 10997:11967-11986 | MS.gene84234:intergenic | 25.0% |
| !!! | TAGGTAAATGTTAGTTTTCA+AGG | - | 10997:12125-12144 | MS.gene84234:intron | 25.0% |
| !!! | TGCCTTATTTTATCATCAAA+AGG | - | 10997:11962-11981 | MS.gene84234:intron | 25.0% |
| AAAGGATATTCCAATAGTCA+GGG | - | 10997:12571-12590 | MS.gene84234:intron | 30.0% | |
| AAATTGTATCCACTTCTGTT+TGG | + | 10997:13164-13183 | MS.gene84234:intergenic | 30.0% | |
| AAGTACTAGAGTGAAAATTG+GGG | - | 10997:12468-12487 | MS.gene84234:CDS | 30.0% | |
| ACGAATTAGATATTGTGACT+TGG | - | 10997:10163-10182 | MS.gene84234:CDS | 30.0% | |
| ACTACTAACCACTAAGAAAA+AGG | - | 10997:11179-11198 | MS.gene84234:intron | 30.0% | |
| ATTGATGGGAAATTTGATAG+TGG | - | 10997:12945-12964 | MS.gene84234:intron | 30.0% | |
| CACTTCCAAAATAGAAAGAA+TGG | + | 10997:12764-12783 | MS.gene84234:intergenic | 30.0% | |
| CATTAAGATGAATGAGTTGT+CGG | - | 10997:12424-12443 | MS.gene84234:CDS | 30.0% | |
| CTACATATTCACACAATGTT+TGG | + | 10997:10461-10480 | MS.gene84234:intergenic | 30.0% | |
| GGTTAAAAACTATAGAGATG+TGG | + | 10997:11336-11355 | MS.gene84234:intergenic | 30.0% | |
| GTATAGGGTTTGATATATGT+TGG | - | 10997:12713-12732 | MS.gene84234:intron | 30.0% | |
| TAAAGGATATTCCAATAGTC+AGG | - | 10997:12570-12589 | MS.gene84234:intron | 30.0% | |
| TAATTAACAACAGTAGGGTA+GGG | + | 10997:11425-11444 | MS.gene84234:intergenic | 30.0% | |
| TATCTAGTTACTGTCACAAT+TGG | - | 10997:12969-12988 | MS.gene84234:intron | 30.0% | |
| TGTATATTCCGATTAAGTCA+TGG | + | 10997:11820-11839 | MS.gene84234:intergenic | 30.0% | |
| TTAGAGAAATGGAATCAGAA+AGG | + | 10997:11717-11736 | MS.gene84234:intergenic | 30.0% | |
| TTGTTAATTAGTGGCTACAT+CGG | - | 10997:11435-11454 | MS.gene84234:intron | 30.0% | |
| ! | ATTTTGTTGGTATGAATGCA+TGG | - | 10997:10426-10445 | MS.gene84234:intron | 30.0% |
| ! | CGGAATATACATGATTTTGA+TGG | - | 10997:11829-11848 | MS.gene84234:intron | 30.0% |
| ! | CTCTATAGTTTTTAACCTGT+CGG | - | 10997:11339-11358 | MS.gene84234:intron | 30.0% |
| ! | TCTATAGTTTTTAACCTGTC+GGG | - | 10997:11340-11359 | MS.gene84234:intron | 30.0% |
| ! | TTGTTTGGATTGTCTGAAAT+AGG | - | 10997:11273-11292 | MS.gene84234:intron | 30.0% |
| !! | CATTCTTTCTATTTTGGAAG+TGG | - | 10997:12762-12781 | MS.gene84234:intron | 30.0% |
| !!! | ATTATTTTAAAGCTCGCAAC+TGG | - | 10997:10897-10916 | MS.gene84234:intron | 30.0% |
| !!! | TTTGGTTTTTCCTACATGTT+TGG | - | 10997:10707-10726 | MS.gene84234:intron | 30.0% |
| AAACTATAGAGATGTGGTGA+TGG | + | 10997:11330-11349 | MS.gene84234:intergenic | 35.0% | |
| AACGAGAGTTGACTAGATAA+AGG | - | 10997:12553-12572 | MS.gene84234:intron | 35.0% | |
| AAGCTAAGTATGAAGAGCTT+GGG | + | 10997:10083-10102 | MS.gene84234:intergenic | 35.0% | |
| AATTAACAACAGTAGGGTAG+GGG | + | 10997:11424-11443 | MS.gene84234:intergenic | 35.0% | |
| ACCCTACTGTTGTTAATTAG+TGG | - | 10997:11426-11445 | MS.gene84234:intron | 35.0% | |
| AGCAAGAAACTCACAGATTA+TGG | - | 10997:12328-12347 | MS.gene84234:intron | 35.0% | |
| AGCCACTAATTAACAACAGT+AGG | + | 10997:11431-11450 | MS.gene84234:intergenic | 35.0% | |
| AGTCATGGAAAATCATTCCT+AGG | + | 10997:11805-11824 | MS.gene84234:intergenic | 35.0% | |
| AGTGATACAGTTACCTTATC+TGG | - | 10997:10734-10753 | MS.gene84234:intron | 35.0% | |
| AGTTACTGTCACAATTGGTT+CGG | - | 10997:12974-12993 | MS.gene84234:intron | 35.0% | |
| ATATCAAACCCTATACCACT+AGG | + | 10997:12709-12728 | MS.gene84234:intergenic | 35.0% | |
| ATCACTACAACCAAACATGT+AGG | + | 10997:10720-10739 | MS.gene84234:intergenic | 35.0% | |
| ATGAGCTTACATTTAATGGG+TGG | - | 10997:12016-12035 | MS.gene84234:intron | 35.0% | |
| ATTGCAGGATTCCTGTTATT+GGG | - | 10997:10318-10337 | MS.gene84234:CDS | 35.0% | |
| CAAGACAGATTAACCAGATA+AGG | + | 10997:10750-10769 | MS.gene84234:intergenic | 35.0% | |
| CTAATTAACAACAGTAGGGT+AGG | + | 10997:11426-11445 | MS.gene84234:intergenic | 35.0% | |
| GATTGTTTCATTGAGGAACT+AGG | + | 10997:11650-11669 | MS.gene84234:intergenic | 35.0% | |
| GCCACTAATTAACAACAGTA+GGG | + | 10997:11430-11449 | MS.gene84234:intergenic | 35.0% | |
| GCCCCTTCTAATGTATAAAT+TGG | - | 10997:10979-10998 | MS.gene84234:intron | 35.0% | |
| GTATGTGAAAACTGCATCTT+TGG | + | 10997:11060-11079 | MS.gene84234:intergenic | 35.0% | |
| TAAATCTCTCGGTACTAGTT+TGG | + | 10997:12610-12629 | MS.gene84234:intergenic | 35.0% | |
| TATTGAAAAACCATCTCCCT+CGG | + | 10997:12107-12126 | MS.gene84234:intergenic | 35.0% | |
| TATTGCAGGATTCCTGTTAT+TGG | - | 10997:10317-10336 | MS.gene84234:CDS | 35.0% | |
| TCGTTACTAGTACTTACACA+TGG | + | 10997:12538-12557 | MS.gene84234:intergenic | 35.0% | |
| TGGAGGATCAAGAAAAATAG+CGG | + | 10997:11575-11594 | MS.gene84234:intergenic | 35.0% | |
| TGTAGTTCCAATGAACATAC+CGG | + | 10997:10936-10955 | MS.gene84234:intergenic | 35.0% | |
| TTGTAAGACGTCACAATGTT+TGG | - | 10997:12161-12180 | MS.gene84234:CDS | 35.0% | |
| TTGTCGGACAATATAGTACT+AGG | - | 10997:12440-12459 | MS.gene84234:CDS | 35.0% | |
| TTTAACTGTTGAAAGACAGC+TGG | + | 10997:11099-11118 | MS.gene84234:intergenic | 35.0% | |
| ! | ACATAATTTGTCATCGTGCA+CGG | + | 10997:11939-11958 | MS.gene84234:intergenic | 35.0% |
| ! | ATTGTCTGAAATAGGATGTG+AGG | - | 10997:11281-11300 | MS.gene84234:intron | 35.0% |
| ! | TGAGCTTACATTTAATGGGT+GGG | - | 10997:12017-12036 | MS.gene84234:intron | 35.0% |
| ! | TGCTGTTTGTACTAATGTCA+GGG | - | 10997:10957-10976 | MS.gene84234:intron | 35.0% |
| ! | TTGTGCTATTATAGGATCAC+AGG | + | 10997:12368-12387 | MS.gene84234:intergenic | 35.0% |
| ! | TTTTAACCTGTCGGGATATT+GGG | - | 10997:11348-11367 | MS.gene84234:intron | 35.0% |
| ! | TTTTTAACCTGTCGGGATAT+TGG | - | 10997:11347-11366 | MS.gene84234:intron | 35.0% |
| !! | TATCCACTTCTGTTTGGTTT+TGG | + | 10997:13158-13177 | MS.gene84234:intergenic | 35.0% |
| !! | TTAGTTTTCAAGGTTTGCTC+AGG | - | 10997:12135-12154 | MS.gene84234:intron | 35.0% |
| !! | TTGCTGTTTGTACTAATGTC+AGG | - | 10997:10956-10975 | MS.gene84234:intron | 35.0% |
| !!! | ATCCACTTCTGTTTGGTTTT+GGG | + | 10997:13157-13176 | MS.gene84234:intergenic | 35.0% |
| AAAGCAAAGCAAAGACCTTC+AGG | + | 10997:11138-11157 | MS.gene84234:intergenic | 40.0% | |
| AACTGGACCAATACAACTTC+CGG | - | 10997:10914-10933 | MS.gene84234:intron | 40.0% | |
| AACTTCCTTCTAAGCAGCTT+AGG | - | 10997:12275-12294 | MS.gene84234:intron | 40.0% | |
| ACAACTTCCGGTATGTTCAT+TGG | - | 10997:10926-10945 | MS.gene84234:intron | 40.0% | |
| ATTAACAACAGTAGGGTAGG+GGG | + | 10997:11423-11442 | MS.gene84234:intergenic | 40.0% | |
| ATTCACACAATGTTTGGCGT+CGG | + | 10997:10455-10474 | MS.gene84234:intergenic | 40.0% | |
| CAAGCTAAGTATGAAGAGCT+TGG | + | 10997:10084-10103 | MS.gene84234:intergenic | 40.0% | |
| CAAGCTCTTCATACTTAGCT+TGG | - | 10997:10082-10101 | MS.gene84234:CDS | 40.0% | |
| CAATCCATTGCAAAATCCGA+GGG | - | 10997:12088-12107 | MS.gene84234:intron | 40.0% | |
| CAATGGTCCTACTAATCTCT+CGG | + | 10997:13238-13257 | MS.gene84234:intergenic | 40.0% | |
| CTCAAAGCTGTCTCTTTCAT+GGG | + | 10997:10008-10027 | MS.gene84234:intergenic | 40.0% | |
| GAACATACCGGAAGTTGTAT+TGG | + | 10997:10924-10943 | MS.gene84234:intergenic | 40.0% | |
| GAGAAGTCACTTCAACAAAG+AGG | + | 10997:10367-10386 | MS.gene84234:intergenic | 40.0% | |
| GGAGGATCAAGAAAAATAGC+GGG | + | 10997:11574-11593 | MS.gene84234:intergenic | 40.0% | |
| GTCCAAAATATAGGACACTG+AGG | - | 10997:10492-10511 | MS.gene84234:intron | 40.0% | |
| TAGGTGAAGGATATTCACCA+TGG | + | 10997:10031-10050 | MS.gene84234:intergenic | 40.0% | |
| TCATATGTTGCCATAGGTGA+AGG | + | 10997:10044-10063 | MS.gene84234:intergenic | 40.0% | |
| TGGTGAATATCCTTCACCTA+TGG | - | 10997:10031-10050 | MS.gene84234:CDS | 40.0% | |
| TGTTGTTAGCAGGAACACTA+TGG | + | 10997:13058-13077 | MS.gene84234:intergenic | 40.0% | |
| TTACACCTAAGCTGCTTAGA+AGG | + | 10997:12283-12302 | MS.gene84234:intergenic | 40.0% | |
| TTCACCTATGGCAACATATG+AGG | - | 10997:10043-10062 | MS.gene84234:CDS | 40.0% | |
| TTGCAGGATTCCTGTTATTG+GGG | - | 10997:10319-10338 | MS.gene84234:CDS | 40.0% | |
| TTTAACCTGTCGGGATATTG+GGG | - | 10997:11349-11368 | MS.gene84234:intron | 40.0% | |
| TTTGTTGAAGTGACTTCTCG+TGG | - | 10997:10368-10387 | MS.gene84234:intron | 40.0% | |
| ! | ACTTTTGTCACCCTGACTAT+TGG | + | 10997:12584-12603 | MS.gene84234:intergenic | 40.0% |
| ! | CAAATGCTTCTTTTGTGCTG+CGG | - | 10997:10834-10853 | MS.gene84234:intron | 40.0% |
| ! | GAGCTTACATTTAATGGGTG+GGG | - | 10997:12018-12037 | MS.gene84234:intron | 40.0% |
| !! | ATTGGTTCGGAGATACTCAA+AGG | - | 10997:12987-13006 | MS.gene84234:intron | 40.0% |
| !! | GAGGGAGATGGTTTTTCAAT+AGG | - | 10997:12106-12125 | MS.gene84234:intron | 40.0% |
| AAGACAGCTGGTTGAACTTG+TGG | + | 10997:11087-11106 | MS.gene84234:intergenic | 45.0% | |
| AATTCCCTTCCCCCAATAAC+AGG | + | 10997:10332-10351 | MS.gene84234:intergenic | 45.0% | |
| ACCTATGGCAACATATGAGG+AGG | - | 10997:10046-10065 | MS.gene84234:CDS | 45.0% | |
| ACCTCCTCATATGTTGCCAT+AGG | + | 10997:10050-10069 | MS.gene84234:intergenic | 45.0% | |
| ATTGCAAAATCCGAGGGAGA+TGG | - | 10997:12094-12113 | MS.gene84234:intron | 45.0% | |
| CAACACCACCTAGTGGTATA+GGG | - | 10997:12698-12717 | MS.gene84234:intron | 45.0% | |
| CACCCAAAACCAAACAGAAG+TGG | - | 10997:13152-13171 | MS.gene84234:CDS | 45.0% | |
| CGAGAGATTAGTAGGACCAT+TGG | - | 10997:13236-13255 | MS.gene84234:CDS | 45.0% | |
| CTCAGCAATGGGATCATCTT+CGG | - | 10997:12899-12918 | MS.gene84234:CDS | 45.0% | |
| CTTGTTCCAGAGTTCACCAA+TGG | + | 10997:13255-13274 | MS.gene84234:intergenic | 45.0% | |
| GATTCCTGTTATTGGGGGAA+GGG | - | 10997:10325-10344 | MS.gene84234:CDS | 45.0% | |
| GCAATCCATTGCAAAATCCG+AGG | - | 10997:12087-12106 | MS.gene84234:intron | 45.0% | |
| GCTCAAAGCTGTCTCTTTCA+TGG | + | 10997:10009-10028 | MS.gene84234:intergenic | 45.0% | |
| GCTGTCTCTTTCATGGGTAA+TGG | + | 10997:10002-10021 | MS.gene84234:intergenic | 45.0% | |
| GGGGTGTAGTTGCAATTGTT+TGG | - | 10997:11258-11277 | MS.gene84234:intron | 45.0% | |
| GTTAGCAGGAACACTATGGT+GGG | + | 10997:13054-13073 | MS.gene84234:intergenic | 45.0% | |
| TCAAACCCTATACCACTAGG+TGG | + | 10997:12706-12725 | MS.gene84234:intergenic | 45.0% | |
| TCAACACCACCTAGTGGTAT+AGG | - | 10997:12697-12716 | MS.gene84234:intron | 45.0% | |
| TCTCTGATTTCTTCCTGCGT+CGG | + | 10997:13112-13131 | MS.gene84234:intergenic | 45.0% | |
| TCTCTTGTGCTCTCAGCAAT+GGG | - | 10997:12888-12907 | MS.gene84234:CDS | 45.0% | |
| TCTTTGCAGAACAGCATCCA+AGG | - | 10997:13186-13205 | MS.gene84234:CDS | 45.0% | |
| TGCAGGATTCCTGTTATTGG+GGG | - | 10997:10320-10339 | MS.gene84234:CDS | 45.0% | |
| TGTTAGCAGGAACACTATGG+TGG | + | 10997:13055-13074 | MS.gene84234:intergenic | 45.0% | |
| TGTTATTGGGGGAAGGGAAT+TGG | - | 10997:10331-10350 | MS.gene84234:CDS | 45.0% | |
| TTAACCTGTCGGGATATTGG+GGG | - | 10997:11350-11369 | MS.gene84234:intron | 45.0% | |
| TTCTCTTGTGCTCTCAGCAA+TGG | - | 10997:12887-12906 | MS.gene84234:CDS | 45.0% | |
| TTGAAGTGACTTCTCGTGGA+GGG | - | 10997:10372-10391 | MS.gene84234:intron | 45.0% | |
| ! | ATCTCCCTCGGATTTTGCAA+TGG | + | 10997:12095-12114 | MS.gene84234:intergenic | 45.0% |
| ! | CGCCTCAGTGTCCTATATTT+TGG | + | 10997:10497-10516 | MS.gene84234:intergenic | 45.0% |
| ! | GAAGCATTTGTAGCCGTTGA+TGG | + | 10997:10824-10843 | MS.gene84234:intergenic | 45.0% |
| !! | AAAGAGACAGCTTTGAGCCA+TGG | - | 10997:10011-10030 | MS.gene84234:CDS | 45.0% |
| !! | GAAAACTGCATCTTTGGAGC+AGG | + | 10997:11054-11073 | MS.gene84234:intergenic | 45.0% |
| !! | TAAATGAAAAATTATAATAA+TGG | - | 10997:12231-12250 | MS.gene84234:CDS | 5.0% |
| AAAACCTCTTCACCGAGGGA+AGG | - | 10997:13211-13230 | MS.gene84234:CDS | 50.0% | |
| AGGCTAAAACCTCTTCACCG+AGG | - | 10997:13206-13225 | MS.gene84234:CDS | 50.0% | |
| AGGTTGTCGGGGTCATTGAT+GGG | - | 10997:12931-12950 | MS.gene84234:CDS | 50.0% | |
| ATCATCTTCGGCAGGATCTC+AGG | - | 10997:12911-12930 | MS.gene84234:CDS | 50.0% | |
| CATGGGCACCAAGTTCATGT+AGG | - | 10997:10121-10140 | MS.gene84234:CDS | 50.0% | |
| GAGAAGCTCCACACTCTCAT+GGG | - | 10997:10104-10123 | MS.gene84234:CDS | 50.0% | |
| GCAAAGCAAAGACCTTCAGG+CGG | + | 10997:11135-11154 | MS.gene84234:intergenic | 50.0% | |
| GGAAGGACCGAGAGATTAGT+AGG | - | 10997:13228-13247 | MS.gene84234:CDS | 50.0% | |
| GGATTCCTGTTATTGGGGGA+AGG | - | 10997:10324-10343 | MS.gene84234:CDS | 50.0% | |
| GGCTAAAACCTCTTCACCGA+GGG | - | 10997:13207-13226 | MS.gene84234:CDS | 50.0% | |
| GTAGGACCATTGGTGAACTC+TGG | - | 10997:13246-13265 | MS.gene84234:CDS | 50.0% | |
| GTTAATTCTGCTCCGCCTGA+AGG | - | 10997:11120-11139 | MS.gene84234:intron | 50.0% | |
| GTTGAAGTGACTTCTCGTGG+AGG | - | 10997:10371-10390 | MS.gene84234:intron | 50.0% | |
| TAACCTGTCGGGATATTGGG+GGG | - | 10997:11351-11370 | MS.gene84234:intron | 50.0% | |
| TAATCTCTCGGTCCTTCCCT+CGG | + | 10997:13226-13245 | MS.gene84234:intergenic | 50.0% | |
| TTGCAGTCAACACCACCTAG+TGG | - | 10997:12691-12710 | MS.gene84234:intron | 50.0% | |
| !! | CGGTGAAGAGGTTTTAGCCT+TGG | + | 10997:13206-13225 | MS.gene84234:intergenic | 50.0% |
| !!! | CTGTTTGGTTTTGGGTGAGC+AGG | + | 10997:13149-13168 | MS.gene84234:intergenic | 50.0% |
| AACAACGTGACCGCCTCTGT+CGG | - | 10997:13074-13093 | MS.gene84234:intron | 55.0% | |
| CAGGTTGTCGGGGTCATTGA+TGG | - | 10997:12930-12949 | MS.gene84234:CDS | 55.0% | |
| CCAAGTTCATGTAGGCTCCC+TGG | - | 10997:10129-10148 | MS.gene84234:CDS | 55.0% | |
| CCAGGGAGCCTACATGAACT+TGG | + | 10997:10132-10151 | MS.gene84234:intergenic | 55.0% | |
| GCAATGGGATCATCTTCGGC+AGG | - | 10997:12903-12922 | MS.gene84234:CDS | 55.0% | |
| GGAGAAGCTCCACACTCTCA+TGG | - | 10997:10103-10122 | MS.gene84234:CDS | 55.0% | |
| ! | GCGGTCACGTTGTTGTTAGC+AGG | + | 10997:13068-13087 | MS.gene84234:intergenic | 55.0% |
| ! | GCTGGCAGCACAGGATTTTG+TGG | + | 10997:13029-13048 | MS.gene84234:intergenic | 55.0% |
| ! | GGAACACTATGGTGGGATGC+TGG | + | 10997:13047-13066 | MS.gene84234:intergenic | 55.0% |
| ! | TCGGCAGGATCTCAGGTTGT+CGG | - | 10997:12918-12937 | MS.gene84234:CDS | 55.0% |
| !! | ACTTGGTGCCCATGAGAGTG+TGG | + | 10997:10115-10134 | MS.gene84234:intergenic | 55.0% |
| !! | GCATCTTTGGAGCAGGAGCT+GGG | + | 10997:11047-11066 | MS.gene84234:intergenic | 55.0% |
| !! | TGCATCTTTGGAGCAGGAGC+TGG | + | 10997:11048-11067 | MS.gene84234:intergenic | 55.0% |
| ACGATGGACACCGACAGAGG+CGG | + | 10997:13087-13106 | MS.gene84234:intergenic | 60.0% | |
| TCACCCCCCAATATCCCGAC+AGG | + | 10997:11357-11376 | MS.gene84234:intergenic | 60.0% | |
| ! | CGGCAGGATCTCAGGTTGTC+GGG | - | 10997:12919-12938 | MS.gene84234:CDS | 60.0% |
| ! | GGCAGGATCTCAGGTTGTCG+GGG | - | 10997:12920-12939 | MS.gene84234:CDS | 60.0% |
| !! | CTTTGGAGCAGGAGCTGGGA+TGG | + | 10997:11043-11062 | MS.gene84234:intergenic | 60.0% |
| CGGTCCTTCCCTCGGTGAAG+AGG | + | 10997:13218-13237 | MS.gene84234:intergenic | 65.0% | |
| GCGACGATGGACACCGACAG+AGG | + | 10997:13090-13109 | MS.gene84234:intergenic | 65.0% | |
| TGGTGGGATGCTGGCAGCAC+AGG | + | 10997:13038-13057 | MS.gene84234:intergenic | 65.0% | |
| ! | TCTTCCTGCGTCGGCGACGA+TGG | + | 10997:13103-13122 | MS.gene84234:intergenic | 65.0% |
| GTGTCCATCGTCGCCGACGC+AGG | - | 10997:13096-13115 | MS.gene84234:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 10997 | gene | 9992 | 13295 | 9992 | ID=MS.gene84234 |
| 10997 | mRNA | 9992 | 13295 | 9992 | ID=MS.gene84234.t1;Parent=MS.gene84234 |
| 10997 | exon | 13149 | 13295 | 13149 | ID=MS.gene84234.t1.exon1;Parent=MS.gene84234.t1 |
| 10997 | CDS | 13149 | 13295 | 13149 | ID=cds.MS.gene84234.t1;Parent=MS.gene84234.t1 |
| 10997 | exon | 12884 | 12962 | 12884 | ID=MS.gene84234.t1.exon2;Parent=MS.gene84234.t1 |
| 10997 | CDS | 12884 | 12962 | 12884 | ID=cds.MS.gene84234.t1;Parent=MS.gene84234.t1 |
| 10997 | exon | 12352 | 12514 | 12352 | ID=MS.gene84234.t1.exon3;Parent=MS.gene84234.t1 |
| 10997 | CDS | 12352 | 12514 | 12352 | ID=cds.MS.gene84234.t1;Parent=MS.gene84234.t1 |
| 10997 | exon | 12146 | 12268 | 12146 | ID=MS.gene84234.t1.exon4;Parent=MS.gene84234.t1 |
| 10997 | CDS | 12146 | 12268 | 12146 | ID=cds.MS.gene84234.t1;Parent=MS.gene84234.t1 |
| 10997 | exon | 9992 | 10383 | 9992 | ID=MS.gene84234.t1.exon5;Parent=MS.gene84234.t1 |
| 10997 | CDS | 9992 | 10383 | 9992 | ID=cds.MS.gene84234.t1;Parent=MS.gene84234.t1 |
| Gene Sequence |
| Protein sequence |
