AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050432


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050432.t1 MTR_7g110130 94.340 265 15 0 1 265 1 265 0.0 503
MS.gene050432.t1 MTR_2g090165 81.509 265 48 1 1 265 1 264 3.58e-158 440
MS.gene050432.t1 MTR_7g110160 80.156 257 32 1 1 257 1 238 2.92e-144 404
MS.gene050432.t1 MTR_7g110140 70.155 258 76 1 1 258 1 257 2.93e-129 367
MS.gene050432.t1 MTR_6g035395 62.109 256 83 2 3 258 2 243 2.52e-107 311
MS.gene050432.t1 MTR_6g023590 49.801 251 125 1 5 254 12 262 4.13e-84 253
MS.gene050432.t1 MTR_6g023950 50.996 251 122 1 5 254 12 262 2.16e-82 248
MS.gene050432.t1 MTR_6g023610 50.000 250 124 1 5 253 12 261 6.07e-80 242
MS.gene050432.t1 MTR_4g052340 49.804 255 124 2 4 258 12 262 2.75e-79 240
MS.gene050432.t1 MTR_7g105460 50.593 253 124 1 5 257 12 263 5.63e-79 239
MS.gene050432.t1 MTR_6g023600 48.606 251 128 1 5 254 12 262 4.07e-78 237
MS.gene050432.t1 MTR_4g052320 49.042 261 128 3 2 260 4 261 4.43e-78 237
MS.gene050432.t1 MTR_6g023990 47.490 259 131 2 1 254 5 263 7.47e-78 236
MS.gene050432.t1 MTR_6g023910 48.617 253 129 1 2 253 9 261 1.72e-77 236
MS.gene050432.t1 MTR_4g052350 49.804 255 124 2 4 258 12 262 1.96e-77 236
MS.gene050432.t1 MTR_7g071680 47.842 278 124 4 2 260 25 300 1.61e-76 234
MS.gene050432.t1 MTR_4g052300 48.659 261 128 3 2 260 4 260 1.88e-75 230
MS.gene050432.t1 MTR_6g023600 48.207 251 123 2 5 254 12 256 2.16e-74 228
MS.gene050432.t1 MTR_7g083870 46.468 269 135 6 4 265 33 299 1.30e-70 219
MS.gene050432.t1 MTR_7g107670 44.141 256 136 3 4 254 31 284 2.16e-70 219
MS.gene050432.t1 MTR_7g105580 45.525 257 120 3 4 259 6 243 1.75e-67 210
MS.gene050432.t1 MTR_4g078630 44.403 268 137 4 1 260 14 277 1.59e-66 208
MS.gene050432.t1 MTR_3g020670 47.510 261 129 3 4 257 14 273 6.66e-66 206
MS.gene050432.t1 MTR_7g105590 50.265 189 93 1 4 192 6 193 1.80e-57 182
MS.gene050432.t1 MTR_7g105570 39.464 261 102 4 2 258 13 221 1.85e-49 163
MS.gene050432.t1 MTR_3g113870 45.055 182 98 2 14 195 29 208 4.13e-48 159
MS.gene050432.t1 MTR_4g084800 50.360 139 69 0 4 142 11 149 2.03e-41 139
MS.gene050432.t1 MTR_4g058840 30.855 269 146 8 6 252 11 261 2.32e-24 99.0
MS.gene050432.t1 MTR_4g058820 30.855 269 146 8 6 252 11 261 2.32e-24 99.0
MS.gene050432.t1 MTR_6g023940 33.654 208 61 4 2 201 9 147 3.02e-24 95.5
MS.gene050432.t1 MTR_4g058810 29.740 269 149 8 6 252 11 261 2.37e-20 88.2
MS.gene050432.t1 MTR_7g113650 27.925 265 170 8 5 258 39 293 3.50e-20 87.8
MS.gene050432.t1 MTR_3g085740 26.616 263 163 10 4 253 73 318 1.64e-19 86.7
MS.gene050432.t1 MTR_1g051165 28.253 269 168 7 4 255 12 272 1.89e-19 85.9
MS.gene050432.t1 MTR_4g131740 28.185 259 167 8 5 252 39 289 7.22e-19 84.3
MS.gene050432.t1 MTR_4g132850 29.528 254 167 6 4 254 5 249 2.11e-18 82.4
MS.gene050432.t1 MTR_1g082760 28.253 269 162 9 5 257 39 292 3.30e-18 82.4
MS.gene050432.t1 MTR_1196s0010 30.040 253 163 7 4 253 272 513 4.59e-18 83.6
MS.gene050432.t1 MTR_7g105560 66.071 56 19 0 4 59 11 66 1.70e-16 75.1
MS.gene050432.t1 MTR_3g068070 28.462 260 171 9 2 255 11 261 3.79e-15 73.6
MS.gene050432.t1 MTR_4g064887 26.923 260 175 8 2 255 11 261 3.81e-15 73.6
MS.gene050432.t1 MTR_3g068155 28.295 258 174 8 3 256 16 266 1.05e-13 69.7
MS.gene050432.t1 MTR_3g068175 28.571 259 174 7 1 255 12 263 1.61e-13 68.9
MS.gene050432.t1 MTR_7g094520 27.165 254 174 5 6 253 11 259 2.31e-13 68.6
MS.gene050432.t1 MTR_3g068065 26.772 254 173 7 6 254 17 262 2.33e-13 68.6
MS.gene050432.t1 MTR_3g068085 26.378 254 176 6 6 255 15 261 9.29e-13 67.0
MS.gene050432.t1 MTR_4g064887 28.856 201 131 6 2 196 11 205 1.53e-12 65.5
MS.gene050432.t1 MTR_8g442750 27.132 258 172 8 6 253 14 265 1.61e-12 66.6
MS.gene050432.t1 MTR_4g086400 27.488 211 124 5 8 198 6 207 4.18e-12 66.2
MS.gene050432.t1 MTR_4g097510 26.842 190 134 4 7 195 3 188 5.06e-12 65.1
MS.gene050432.t1 MTR_7g094510 26.236 263 175 7 1 253 1 254 6.50e-12 64.3
MS.gene050432.t1 MTR_4g086410 28.910 211 121 5 8 198 6 207 7.77e-12 65.5
MS.gene050432.t1 MTR_7g076660 39.560 91 51 2 9 95 8 98 3.59e-11 62.4
MS.gene050432.t1 MTR_7g063320 28.679 265 164 9 2 253 11 263 5.07e-11 62.0
MS.gene050432.t1 MTR_7g076660 38.462 91 52 2 9 95 7 97 7.56e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050432.t1 AT2G47140 62.891 256 94 1 1 256 1 255 5.50e-114 328
MS.gene050432.t1 AT3G29250 57.588 257 108 1 1 257 1 256 1.32e-100 294
MS.gene050432.t1 AT3G29250 57.588 257 108 1 1 257 37 292 2.75e-100 295
MS.gene050432.t1 AT2G47130 56.977 258 109 2 1 258 1 256 2.92e-100 293
MS.gene050432.t1 AT3G29250 57.255 255 108 1 3 257 41 294 2.28e-99 292
MS.gene050432.t1 AT3G29260 57.364 258 106 3 1 257 1 255 2.17e-97 286
MS.gene050432.t1 AT2G47120 55.385 260 109 4 1 258 1 255 3.32e-97 285
MS.gene050432.t1 AT2G47120 55.686 255 106 4 5 257 6 255 1.97e-96 283
MS.gene050432.t1 AT3G51680 48.897 272 124 3 4 260 30 301 5.56e-74 228
MS.gene050432.t1 AT1G52340 45.455 264 133 3 4 257 16 278 4.02e-67 210
MS.gene050432.t1 AT3G26760 41.509 265 145 4 2 258 32 294 6.52e-66 207
MS.gene050432.t1 AT4G03140 42.692 260 142 3 4 258 76 333 5.25e-65 206
MS.gene050432.t1 AT3G26770 43.939 264 132 6 4 257 39 296 1.49e-62 199
MS.gene050432.t1 AT3G42960 46.415 265 123 7 2 254 4 261 8.61e-58 186
MS.gene050432.t1 AT2G47150 33.824 272 86 6 6 257 1 198 1.94e-36 128
MS.gene050432.t1 AT3G55290 29.231 260 162 8 6 252 18 268 2.53e-20 88.2
MS.gene050432.t1 AT3G55290 29.231 260 162 8 6 252 17 267 2.57e-20 88.2
MS.gene050432.t1 AT1G07450 30.233 258 170 7 1 255 3 253 2.84e-20 87.8
MS.gene050432.t1 AT2G29310 28.682 258 171 7 3 255 4 253 5.76e-20 87.0
MS.gene050432.t1 AT1G62610 29.231 260 163 6 6 252 15 266 7.18e-20 87.0
MS.gene050432.t1 AT1G62610 29.231 260 163 6 6 252 14 265 7.44e-20 87.0
MS.gene050432.t1 AT1G62610 29.231 260 163 6 6 252 19 270 9.53e-20 86.7
MS.gene050432.t1 AT1G62610 29.231 260 163 6 6 252 13 264 9.84e-20 86.7
MS.gene050432.t1 AT2G29340 28.846 260 168 7 3 255 4 253 3.18e-19 84.7
MS.gene050432.t1 AT2G29340 28.462 260 169 7 3 255 4 253 5.08e-19 85.1
MS.gene050432.t1 AT1G63380 29.104 268 159 9 6 255 17 271 2.85e-18 82.4
MS.gene050432.t1 AT1G63380 29.434 265 156 9 6 252 15 266 2.88e-18 82.4
MS.gene050432.t1 AT1G63380 29.104 268 159 9 6 255 19 273 2.92e-18 82.4
MS.gene050432.t1 AT3G55310 28.846 260 163 8 6 252 17 267 3.27e-18 82.4
MS.gene050432.t1 AT2G29150 30.534 262 162 9 2 255 12 261 3.50e-18 82.0
MS.gene050432.t1 AT1G63380 29.434 265 156 9 6 252 22 273 3.68e-18 82.4
MS.gene050432.t1 AT2G29360 28.839 267 159 9 3 255 13 262 9.88e-18 80.9
MS.gene050432.t1 AT2G29290 29.963 267 156 7 3 255 4 253 1.59e-17 80.1
MS.gene050432.t1 AT2G17845 27.985 268 166 8 6 256 47 304 2.53e-17 80.5
MS.gene050432.t1 AT3G46170 27.907 258 168 7 6 252 26 276 1.45e-16 77.8
MS.gene050432.t1 AT1G24360 25.969 258 175 8 4 255 72 319 2.04e-16 77.8
MS.gene050432.t1 AT2G30670 27.132 258 175 6 3 255 4 253 2.05e-15 74.3
MS.gene050432.t1 AT2G29350 28.358 268 160 10 2 255 11 260 2.09e-15 74.3
MS.gene050432.t1 AT2G29340 28.641 206 133 5 3 201 4 202 2.26e-15 73.2
MS.gene050432.t1 AT2G29340 28.641 206 133 5 3 201 4 202 2.26e-15 73.2
MS.gene050432.t1 AT1G54870 26.415 265 174 8 5 258 83 337 4.96e-15 74.3
MS.gene050432.t1 AT1G54870 26.415 265 174 8 5 258 81 335 5.44e-15 73.9
MS.gene050432.t1 AT1G07440 27.715 267 161 9 3 255 9 257 9.70e-15 72.4
MS.gene050432.t1 AT5G06060 30.038 263 161 9 3 255 6 255 1.19e-14 72.4
MS.gene050432.t1 AT2G29300 27.969 261 170 10 3 255 4 254 3.06e-14 71.2
MS.gene050432.t1 AT2G29300 27.068 266 176 10 3 260 4 259 3.51e-14 71.2
MS.gene050432.t1 AT4G05530 31.395 258 157 9 4 254 7 251 4.19e-14 70.5
MS.gene050432.t1 AT1G49670 29.524 210 119 5 7 196 5 205 6.05e-14 71.6
MS.gene050432.t1 AT2G29370 27.881 269 171 11 3 261 13 268 6.57e-14 70.1
MS.gene050432.t1 AT1G49670 29.524 210 119 5 7 196 5 205 7.25e-14 71.6
MS.gene050432.t1 AT2G29290 29.954 217 132 6 42 255 37 236 7.54e-14 69.7
MS.gene050432.t1 AT3G05260 26.336 262 172 8 5 255 36 287 7.58e-14 70.5
MS.gene050432.t1 AT5G18210 28.244 262 164 5 6 253 8 259 1.01e-12 66.6
MS.gene050432.t1 AT4G13180 28.030 264 163 6 6 255 13 263 5.26e-12 64.7
MS.gene050432.t1 AT2G29350 29.187 209 120 8 2 196 11 205 4.05e-11 61.6

Find 55 sgRNAs with CRISPR-Local

Find 74 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGAAAGGAATTACATTAA+AGG 0.203968 7.1:-4546336 MS.gene050432:CDS
GACTGATCCACGAACATTAA+TGG 0.261085 7.1:+4546643 None:intergenic
AGCAGATATCAATGATGAAT+TGG 0.283540 7.1:-4546873 MS.gene050432:CDS
AATCATCAATGTCGAGAAAA+AGG 0.290314 7.1:-4547198 None:intergenic
AGTGTAGCTGCTTCTGTTGC+TGG 0.306606 7.1:-4546551 MS.gene050432:CDS
GTGAAGACATTCGTGGAAAA+TGG 0.309291 7.1:-4546911 MS.gene050432:CDS
ACATCCAAACATGGTCTCTT+AGG 0.311178 7.1:-4546506 MS.gene050432:CDS
TTATATTAGTGGACACAATT+TGG 0.312298 7.1:-4546264 MS.gene050432:CDS
CACCAAGTTGCTACAACAAT+TGG 0.313612 7.1:-4546848 MS.gene050432:CDS
TACACTGGCAGTACAAATTA+TGG 0.348031 7.1:+4546568 None:intergenic
GTTGCTAAACATAATGTCTA+AGG 0.368211 7.1:+4546736 None:intergenic
GCTGCTTCTGTTGCTGGAAC+TGG 0.384524 7.1:-4546545 MS.gene050432:CDS
TTATCATAGGTTGGAGGGTA+AGG 0.422520 7.1:-4546978 MS.gene050432:intron
GAAGAATCAGCTTATATTAG+TGG 0.431042 7.1:-4546275 MS.gene050432:CDS
TGCGGTGAGCTTGGAGCTTA+CGG 0.431271 7.1:-4546467 MS.gene050432:CDS
CGTTCAACGTGCGGTGAGCT+TGG 0.449623 7.1:-4546476 MS.gene050432:CDS
GCAGATATCAATGATGAATT+GGG 0.463215 7.1:-4546872 MS.gene050432:CDS
AAGTCCTAAGAGACCATGTT+TGG 0.467093 7.1:+4546502 None:intergenic
ACCCAATTGTTGTAGCAACT+TGG 0.467514 7.1:+4546846 None:intergenic
TTTAGCAACGCTGGAATTGA+AGG 0.468853 7.1:-4546722 MS.gene050432:CDS
AATGATTCTGCTAATTTGAA+AGG 0.470724 7.1:-4546350 MS.gene050432:CDS
CACGAATGTCTTCACTGTCT+CGG 0.471132 7.1:+4546919 None:intergenic
AGCTGCTCTCTTTCTTGCAT+CGG 0.473087 7.1:-4546297 MS.gene050432:CDS
ACCAAGTTGCTACAACAATT+GGG 0.482213 7.1:-4546847 MS.gene050432:CDS
CAAGCACGCTGCACGTATCA+TGG 0.486933 7.1:-4546612 MS.gene050432:CDS
GACATTATGTTTAGCAACGC+TGG 0.491704 7.1:-4546731 MS.gene050432:CDS
GGTAAGGTTGCTATAGTGAC+TGG 0.496701 7.1:-4546962 MS.gene050432:CDS
AACATGGCCATTAATGTTCG+TGG 0.507255 7.1:-4546650 MS.gene050432:CDS
CACAATTTGGTGGTCGATGG+AGG 0.510608 7.1:-4546251 MS.gene050432:CDS
GTGAGTGAAGTTGAAGCTAT+GGG 0.510902 7.1:-4546374 MS.gene050432:CDS
AGAGGCGTGGCAACAGCATA+CGG 0.535077 7.1:+4546422 None:intergenic
AGCAACAGAAGCAGCTACAC+TGG 0.548413 7.1:+4546553 None:intergenic
GCTTCTGTTGCTGGAACTGG+TGG 0.550638 7.1:-4546542 MS.gene050432:CDS
AGTTGCTACAACAATTGGGT+TGG 0.551015 7.1:-4546843 MS.gene050432:CDS
GGTGAGTGAAGTTGAAGCTA+TGG 0.560707 7.1:-4546375 MS.gene050432:CDS
TATTAGTGGACACAATTTGG+TGG 0.561555 7.1:-4546261 MS.gene050432:CDS
GGACACAATTTGGTGGTCGA+TGG 0.563116 7.1:-4546254 MS.gene050432:CDS
CGAGACAGTGAAGACATTCG+TGG 0.564162 7.1:-4546918 MS.gene050432:CDS
GGAAACAGTAGCTTTCGCAT+TGG 0.572052 7.1:-4546771 MS.gene050432:CDS
TGCATGTAGAGCACTGAACA+TGG 0.590712 7.1:-4546399 MS.gene050432:CDS
GTAAGGTTGCTATAGTGACT+GGG 0.597391 7.1:-4546961 MS.gene050432:CDS
TTCAGTGCTCTACATGCAAG+AGG 0.603585 7.1:+4546404 None:intergenic
GATTATGTCACATCCAAACA+TGG 0.609752 7.1:-4546515 MS.gene050432:CDS
TGCTCTACATGCAAGAGGCG+TGG 0.617171 7.1:+4546409 None:intergenic
CATCTCTCACATCACAATGG+TGG 0.624448 7.1:+4546807 None:intergenic
TTTCATCTCTCACATCACAA+TGG 0.636508 7.1:+4546804 None:intergenic
AGCAACGCTGGAATTGAAGG+TGG 0.637971 7.1:-4546719 MS.gene050432:CDS
GGACTTGTACGTTCAACGTG+CGG 0.641327 7.1:-4546485 MS.gene050432:CDS
CAGTACAAATTATGGATCCG+CGG 0.653793 7.1:+4546576 None:intergenic
TGAGTGAAGTTGAAGCTATG+GGG 0.654036 7.1:-4546373 MS.gene050432:CDS
GAATGAATTTGACAACAACA+TGG 0.663292 7.1:-4546666 MS.gene050432:CDS
TAAGGTTGCTATAGTGACTG+GGG 0.680742 7.1:-4546960 MS.gene050432:CDS
GCACGCTGCACGTATCATGG+TGG 0.695569 7.1:-4546609 MS.gene050432:CDS
AAGGTTGCTATAGTGACTGG+GGG 0.716926 7.1:-4546959 MS.gene050432:CDS
ATGTAGAGCACTGAACATGG+AGG 0.811309 7.1:-4546396 MS.gene050432:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTTAATTAATTTTATCAT+AGG - chr7.1:4546407-4546426 MS.gene050432:CDS 10.0%
!!! TAATTAATTTTATCATAGGT+TGG - chr7.1:4546411-4546430 MS.gene050432:CDS 15.0%
!! TTATTAGGATATATTCATGT+GGG + chr7.1:4546327-4546346 None:intergenic 20.0%
!! TTTGAAAGGAATTACATTAA+AGG - chr7.1:4547062-4547081 MS.gene050432:intron 20.0%
!!! GATTTAACCTTTTTGAAAAT+TGG - chr7.1:4546282-4546301 MS.gene050432:CDS 20.0%
! AATGATTCTGCTAATTTGAA+AGG - chr7.1:4547048-4547067 MS.gene050432:intron 25.0%
! CAAAATTTCACCTAATAAGA+TGG + chr7.1:4546261-4546280 None:intergenic 25.0%
! CATGTAGTAATGTTCTTATT+AGG + chr7.1:4546342-4546361 None:intergenic 25.0%
! CTTATTAGGATATATTCATG+TGG + chr7.1:4546328-4546347 None:intergenic 25.0%
! TGTATTCATGCAACATAAAT+AGG + chr7.1:4546377-4546396 None:intergenic 25.0%
!! TTATATTAGTGGACACAATT+TGG - chr7.1:4547134-4547153 MS.gene050432:intron 25.0%
!!! TAATTTTATCATAGGTTGGA+GGG - chr7.1:4546415-4546434 MS.gene050432:CDS 25.0%
!!! TTAATTTTATCATAGGTTGG+AGG - chr7.1:4546414-4546433 MS.gene050432:CDS 25.0%
AGCAGATATCAATGATGAAT+TGG - chr7.1:4546525-4546544 MS.gene050432:CDS 30.0%
GAAGAATCAGCTTATATTAG+TGG - chr7.1:4547123-4547142 MS.gene050432:intron 30.0%
GAATGAATTTGACAACAACA+TGG - chr7.1:4546732-4546751 MS.gene050432:CDS 30.0%
GCAGATATCAATGATGAATT+GGG - chr7.1:4546526-4546545 MS.gene050432:CDS 30.0%
GTTGCTAAACATAATGTCTA+AGG + chr7.1:4546665-4546684 None:intergenic 30.0%
ACCAAGTTGCTACAACAATT+GGG - chr7.1:4546551-4546570 MS.gene050432:CDS 35.0%
CTAACACTCACCATCTTATT+AGG - chr7.1:4546248-4546267 MS.gene050432:CDS 35.0%
GAGAGATGAAAAACAAGTTG+AGG - chr7.1:4546606-4546625 MS.gene050432:CDS 35.0%
GATTATGTCACATCCAAACA+TGG - chr7.1:4546883-4546902 MS.gene050432:CDS 35.0%
GCTTTCGCATTGGAAAAATA+TGG - chr7.1:4546637-4546656 MS.gene050432:CDS 35.0%
TACACTGGCAGTACAAATTA+TGG + chr7.1:4546833-4546852 None:intergenic 35.0%
TGGGTTCACATTATTATGTG+AGG + chr7.1:4546308-4546327 None:intergenic 35.0%
TTTCATCTCTCACATCACAA+TGG + chr7.1:4546597-4546616 None:intergenic 35.0%
! TATTAGTGGACACAATTTGG+TGG - chr7.1:4547137-4547156 MS.gene050432:intron 35.0%
! TGTGAGGCCAATTTTCAAAA+AGG + chr7.1:4546292-4546311 None:intergenic 35.0%
AACATGGCCATTAATGTTCG+TGG - chr7.1:4546748-4546767 MS.gene050432:CDS 40.0%
AAGTCCTAAGAGACCATGTT+TGG + chr7.1:4546899-4546918 None:intergenic 40.0%
ACATCCAAACATGGTCTCTT+AGG - chr7.1:4546892-4546911 MS.gene050432:CDS 40.0%
ACCCAATTGTTGTAGCAACT+TGG + chr7.1:4546555-4546574 None:intergenic 40.0%
AGTTGCTACAACAATTGGGT+TGG - chr7.1:4546555-4546574 MS.gene050432:CDS 40.0%
CACCAAGTTGCTACAACAAT+TGG - chr7.1:4546550-4546569 MS.gene050432:CDS 40.0%
CAGTACAAATTATGGATCCG+CGG + chr7.1:4546825-4546844 None:intergenic 40.0%
GACATTATGTTTAGCAACGC+TGG - chr7.1:4546667-4546686 MS.gene050432:CDS 40.0%
GACTGATCCACGAACATTAA+TGG + chr7.1:4546758-4546777 None:intergenic 40.0%
GTAAGGTTGCTATAGTGACT+GGG - chr7.1:4546437-4546456 MS.gene050432:CDS 40.0%
GTGAAGACATTCGTGGAAAA+TGG - chr7.1:4546487-4546506 MS.gene050432:CDS 40.0%
GTGAGTGAAGTTGAAGCTAT+GGG - chr7.1:4547024-4547043 MS.gene050432:intron 40.0%
TAAGGTTGCTATAGTGACTG+GGG - chr7.1:4546438-4546457 MS.gene050432:CDS 40.0%
TGAGTGAAGTTGAAGCTATG+GGG - chr7.1:4547025-4547044 MS.gene050432:intron 40.0%
TTTAGCAACGCTGGAATTGA+AGG - chr7.1:4546676-4546695 MS.gene050432:CDS 40.0%
! TTATCATAGGTTGGAGGGTA+AGG - chr7.1:4546420-4546439 MS.gene050432:CDS 40.0%
AAGGTTGCTATAGTGACTGG+GGG - chr7.1:4546439-4546458 MS.gene050432:CDS 45.0%
AGCTGCTCTCTTTCTTGCAT+CGG - chr7.1:4547101-4547120 MS.gene050432:intron 45.0%
CACGAATGTCTTCACTGTCT+CGG + chr7.1:4546482-4546501 None:intergenic 45.0%
CATCTCTCACATCACAATGG+TGG + chr7.1:4546594-4546613 None:intergenic 45.0%
GGAAACAGTAGCTTTCGCAT+TGG - chr7.1:4546627-4546646 MS.gene050432:CDS 45.0%
GGTAAGGTTGCTATAGTGAC+TGG - chr7.1:4546436-4546455 MS.gene050432:CDS 45.0%
GGTGAGTGAAGTTGAAGCTA+TGG - chr7.1:4547023-4547042 MS.gene050432:intron 45.0%
TTCAGTGCTCTACATGCAAG+AGG + chr7.1:4546997-4547016 None:intergenic 45.0%
! ATGGTGGAGAGAAAAATCCG+CGG - chr7.1:4546805-4546824 MS.gene050432:CDS 45.0%
!! ATGTAGAGCACTGAACATGG+AGG - chr7.1:4547002-4547021 MS.gene050432:intron 45.0%
!! TGCATGTAGAGCACTGAACA+TGG - chr7.1:4546999-4547018 MS.gene050432:intron 45.0%
AGATGGTGAGTGTTAGACGC+AGG + chr7.1:4546244-4546263 None:intergenic 50.0%
AGCAACAGAAGCAGCTACAC+TGG + chr7.1:4546848-4546867 None:intergenic 50.0%
AGCAACGCTGGAATTGAAGG+TGG - chr7.1:4546679-4546698 MS.gene050432:CDS 50.0%
AGTGTAGCTGCTTCTGTTGC+TGG - chr7.1:4546847-4546866 MS.gene050432:CDS 50.0%
CGAGACAGTGAAGACATTCG+TGG - chr7.1:4546480-4546499 MS.gene050432:CDS 50.0%
GAGTGTTAGACGCAGGAGTA+AGG + chr7.1:4546237-4546256 None:intergenic 50.0%
GGACTTGTACGTTCAACGTG+CGG - chr7.1:4546913-4546932 MS.gene050432:CDS 50.0%
! CACAATTTGGTGGTCGATGG+AGG - chr7.1:4547147-4547166 MS.gene050432:intron 50.0%
! GGACACAATTTGGTGGTCGA+TGG - chr7.1:4547144-4547163 MS.gene050432:intron 50.0%
ATAGTGACTGGGGGAGCAAG+CGG - chr7.1:4546448-4546467 MS.gene050432:CDS 55.0%
CAAGCACGCTGCACGTATCA+TGG - chr7.1:4546786-4546805 MS.gene050432:CDS 55.0%
GCTGCTTCTGTTGCTGGAAC+TGG - chr7.1:4546853-4546872 MS.gene050432:CDS 55.0%
GCTTCTGTTGCTGGAACTGG+TGG - chr7.1:4546856-4546875 MS.gene050432:CDS 55.0%
TGCGGTGAGCTTGGAGCTTA+CGG - chr7.1:4546931-4546950 MS.gene050432:CDS 55.0%
TGCTCTACATGCAAGAGGCG+TGG + chr7.1:4546992-4547011 None:intergenic 55.0%
! AGAGGCGTGGCAACAGCATA+CGG + chr7.1:4546979-4546998 None:intergenic 55.0%
ACTGGGGGAGCAAGCGGAAT+AGG - chr7.1:4546454-4546473 MS.gene050432:CDS 60.0%
CGTTCAACGTGCGGTGAGCT+TGG - chr7.1:4546922-4546941 MS.gene050432:CDS 60.0%
GCACGCTGCACGTATCATGG+TGG - chr7.1:4546789-4546808 MS.gene050432:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 4546208 4547212 4546208 ID=MS.gene050432
chr7.1 mRNA 4546208 4547212 4546208 ID=MS.gene050432.t1;Parent=MS.gene050432
chr7.1 exon 4547199 4547212 4547199 ID=MS.gene050432.t1.exon1;Parent=MS.gene050432.t1
chr7.1 CDS 4547199 4547212 4547199 ID=cds.MS.gene050432.t1;Parent=MS.gene050432.t1
chr7.1 exon 4546208 4546991 4546208 ID=MS.gene050432.t1.exon2;Parent=MS.gene050432.t1
chr7.1 CDS 4546208 4546991 4546208 ID=cds.MS.gene050432.t1;Parent=MS.gene050432.t1
Gene Sequence

>MS.gene050432

ATGTCGAGAAAAAGGTACTACATATTCCTTACTCCTGCGTCTAACACTCACCATCTTATTAGGTGAAATTTTGTGATTTAACCTTTTTGAAAATTGGCCTCACATAATAATGTGAACCCACATGAATATATCCTAATAAGAACATTACTACATGAATTTATTTTATCCTATTTATGTTGCATGAATACATGATGAATCAATCTTAATTAATTTTATCATAGGTTGGAGGGTAAGGTTGCTATAGTGACTGGGGGAGCAAGCGGAATAGGAGCCGAGACAGTGAAGACATTCGTGGAAAATGGAGCATTTGTAGTCATAGCAGATATCAATGATGAATTGGGTCACCAAGTTGCTACAACAATTGGGTTGGACAAAGTGAGTTACCACCATTGTGATGTGAGAGATGAAAAACAAGTTGAGGAAACAGTAGCTTTCGCATTGGAAAAATATGGAACCTTAGACATTATGTTTAGCAACGCTGGAATTGAAGGTGGTATGTGTAGCAGCATACTAGAATTTGATCTGAATGAATTTGACAACAACATGGCCATTAATGTTCGTGGATCAGTCGCAGCTATCAAGCACGCTGCACGTATCATGGTGGAGAGAAAAATCCGCGGATCCATAATTTGTACTGCCAGTGTAGCTGCTTCTGTTGCTGGAACTGGTGGTCATGATTATGTCACATCCAAACATGGTCTCTTAGGACTTGTACGTTCAACGTGCGGTGAGCTTGGAGCTTACGGAATTAGAGTCAATTCAATCTCACCGTATGCTGTTGCCACGCCTCTTGCATGTAGAGCACTGAACATGGAGGTGAGTGAAGTTGAAGCTATGGGGAATGATTCTGCTAATTTGAAAGGAATTACATTAAAGGCTACTCATATTGCAGAAGCTGCTCTCTTTCTTGCATCGGAAGAATCAGCTTATATTAGTGGACACAATTTGGTGGTCGATGGAGGCTTTTCTGTTATTAATAGTTGTGTTCCTACTACTAAAAAATAA

Protein sequence

>MS.gene050432.t1

MSRKRLEGKVAIVTGGASGIGAETVKTFVENGAFVVIADINDELGHQVATTIGLDKVSYHHCDVRDEKQVEETVAFALEKYGTLDIMFSNAGIEGGMCSSILEFDLNEFDNNMAINVRGSVAAIKHAARIMVERKIRGSIICTASVAASVAGTGGHDYVTSKHGLLGLVRSTCGELGAYGIRVNSISPYAVATPLACRALNMEVSEVEAMGNDSANLKGITLKATHIAEAALFLASEESAYISGHNLVVDGGFSVINSCVPTTKK