AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84282

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84282.t1 MTR_2g087270 95.078 386 19 0 1 386 1 386 0.0 766
MS.gene84282.t1 MTR_4g109500 30.102 392 232 13 8 385 10 373 4.55e-47 170
MS.gene84282.t1 MTR_4g109500 30.102 392 232 13 8 385 10 373 4.73e-47 170
MS.gene84282.t1 MTR_8g093800 32.063 315 191 7 48 344 75 384 1.42e-42 154
MS.gene84282.t1 MTR_4g111985 32.249 338 219 6 50 384 218 548 6.45e-42 155
MS.gene84282.t1 MTR_4g111985 35.357 280 173 4 50 327 218 491 1.01e-41 153
MS.gene84282.t1 MTR_4g111985 35.461 282 174 4 50 329 257 532 1.41e-41 155
MS.gene84282.t1 MTR_4g055080 28.667 300 182 9 85 368 34 317 1.01e-25 107
MS.gene84282.t1 MTR_4g055080 28.667 300 182 9 85 368 59 342 1.44e-25 107
MS.gene84282.t1 MTR_3g118535 36.943 157 94 2 154 310 149 300 1.51e-25 108
MS.gene84282.t1 MTR_3g077160 34.066 182 110 3 154 335 161 332 4.70e-25 106
MS.gene84282.t1 MTR_5g004640 36.306 157 95 2 154 310 152 303 5.07e-24 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84282.t1 AT1G08460 71.582 373 104 2 14 384 3 375 0.0 571
MS.gene84282.t1 AT1G08460 75.547 274 65 2 15 286 4 277 1.10e-156 444
MS.gene84282.t1 AT5G61060 30.051 396 235 11 4 381 14 385 7.74e-46 167
MS.gene84282.t1 AT5G61070 30.670 388 223 12 12 381 55 414 4.59e-45 165
MS.gene84282.t1 AT5G61060 30.051 396 231 12 4 381 14 381 7.79e-45 164
MS.gene84282.t1 AT4G33470 29.915 351 210 9 48 374 78 416 9.66e-43 154
MS.gene84282.t1 AT3G18520 35.106 282 175 4 48 327 169 444 5.19e-38 142
MS.gene84282.t1 AT3G18520 34.859 284 177 4 48 329 169 446 6.73e-38 143
MS.gene84282.t1 AT3G18520 34.859 284 177 4 48 329 169 446 6.74e-38 144
MS.gene84282.t1 AT3G18520 34.859 284 177 4 48 329 169 446 1.09e-37 143
MS.gene84282.t1 AT3G44680 28.667 300 182 9 85 368 59 342 2.15e-27 112
MS.gene84282.t1 AT5G63110 29.260 311 174 11 48 335 36 323 1.98e-26 110
MS.gene84282.t1 AT4G38130 35.669 157 96 2 154 310 148 299 8.32e-24 102
MS.gene84282.t1 AT4G38130 35.669 157 96 2 154 310 148 299 1.35e-23 102
MS.gene84282.t1 AT5G35600 33.333 186 102 5 154 335 147 314 2.72e-19 89.4

Find 105 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATATCAGGCTCAAATTTA+TGG 0.115466 2.2:-11724561 None:intergenic
CTATCTCTCCTTATGTTTCT+TGG 0.167482 2.2:+11722734 MS.gene84282:CDS
ATGGAAGGCTATAGAGAAAT+TGG 0.218703 2.2:+11725167 MS.gene84282:CDS
CGTCTCGTCCTCCGGATAAT+AGG 0.219824 2.2:-11725345 None:intergenic
GTACAGTTAGCTTTAGATTC+TGG 0.256578 2.2:+11724277 MS.gene84282:CDS
ATAGATATTGATGTTCATTA+TGG 0.271623 2.2:+11724319 MS.gene84282:CDS
ATTGATGTTCATTATGGAAA+TGG 0.351697 2.2:+11724325 MS.gene84282:CDS
TATGCTTTGGTTAGGCCTCC+TGG 0.361621 2.2:+11724193 MS.gene84282:CDS
GGCTCAAATTTATGGATTGA+TGG 0.362518 2.2:-11724553 None:intergenic
TTCCAACACGTCTAAGAAAC+CGG 0.362595 2.2:-11722653 None:intergenic
GATATGATTGTCTTGGTTGT+AGG 0.362797 2.2:+11724577 MS.gene84282:CDS
CTGCTAGACCGGCGTTGTTA+AGG 0.377714 2.2:-11724255 None:intergenic
ATACCTTTGCCAAATGGAAC+TGG 0.380604 2.2:+11724490 MS.gene84282:CDS
TGGAAAAGTTGCTTATGCTT+TGG 0.394414 2.2:+11724180 MS.gene84282:CDS
CCTTATGTTTCTTGGCACCT+TGG 0.399647 2.2:+11722742 MS.gene84282:CDS
TTCTGCTACCGCATCTGTAT+TGG 0.406722 2.2:-11722539 None:intergenic
CCATTGTCCCCAGTTCCATT+TGG 0.421588 2.2:-11724499 None:intergenic
TGTTTACATGCAACACTTGA+AGG 0.421754 2.2:+11725281 MS.gene84282:CDS
CTAGGTGATGGAAAAGGTTA+TGG 0.423056 2.2:+11724454 MS.gene84282:CDS
GTGTGAAAAGAAAGGAGCTC+AGG 0.423266 2.2:-11722781 None:intergenic
ACAGAAAACGTCTCGTCCTC+CGG 0.432609 2.2:-11725353 None:intergenic
TCACCATGCTCAGCCTTCTC+AGG 0.438971 2.2:+11724216 MS.gene84282:CDS
TTGAACATACCTTTGCCAAA+TGG 0.438998 2.2:+11724484 MS.gene84282:CDS
TGTTAAGCATTGCCTTCCAT+TGG 0.445060 2.2:-11725144 None:intergenic
TTCATATGAACCATGGATCA+TGG 0.448725 2.2:+11724395 MS.gene84282:CDS
ACAACCAAGACAATCATATC+AGG 0.457583 2.2:-11724574 None:intergenic
TCGATGAAGCACTTGCTTGA+CGG 0.460456 2.2:+11724154 MS.gene84282:CDS
GTTAAGCATTGCCTTCCATT+GGG 0.466444 2.2:-11725143 None:intergenic
CTCAGAGTACATAAATGAAC+TGG 0.467324 2.2:+11724030 MS.gene84282:intron
CATTCTTGAACCCTGGATCA+TGG 0.469920 2.2:+11724095 MS.gene84282:CDS
AGATTCTGTTGCCTATTATC+CGG 0.472439 2.2:+11725334 MS.gene84282:CDS
GCTCAGCCTTCTCAGGCTGA+TGG 0.478600 2.2:+11724223 MS.gene84282:CDS
AGCTAACTGTACTGCTAGAC+CGG 0.480094 2.2:-11724266 None:intergenic
AGTGCAGCATCCCATGATCC+AGG 0.481293 2.2:-11724106 None:intergenic
CTCAGCCTTCTCAGGCTGAT+GGG 0.482724 2.2:+11724224 MS.gene84282:CDS
ATGCTGCACTTCTTGCCGCC+GGG 0.484367 2.2:+11724119 MS.gene84282:CDS
TAATAGATAAAATGCCTTTG+TGG 0.486516 2.2:+11725405 MS.gene84282:CDS
CAAGAAACATAAGGAGAGAT+AGG 0.488178 2.2:-11722733 None:intergenic
TGTGGCACATTCTTGAACCC+TGG 0.495198 2.2:+11724088 MS.gene84282:CDS
AAGTTGCTTATGCTTTGGTT+AGG 0.495823 2.2:+11724185 MS.gene84282:CDS
CCCCGGTTTCTTAGACGTGT+TGG 0.500802 2.2:+11722651 MS.gene84282:CDS
TCATATGAACCATGGATCAT+GGG 0.500843 2.2:+11724396 MS.gene84282:CDS
GAAGGCTGAGCATGGTGACC+AGG 0.501428 2.2:-11724211 None:intergenic
TGGAAGGCTATAGAGAAATT+GGG 0.506833 2.2:+11725168 MS.gene84282:CDS
TGGGCGACTTCTTATTGTGC+AGG 0.513449 2.2:+11725226 MS.gene84282:CDS
AAGCACTTGCTTGACGGACA+TGG 0.517006 2.2:+11724160 MS.gene84282:CDS
ATTCTTGAACCCTGGATCAT+GGG 0.518742 2.2:+11724096 MS.gene84282:CDS
GATGCTGCACTTCTTGCCGC+CGG 0.519018 2.2:+11724118 MS.gene84282:CDS
CTGGTAAAAGCTGATAAAGA+AGG 0.519535 2.2:+11724049 MS.gene84282:CDS
CTTCTTATTGTGCAGGAAGG+TGG 0.519705 2.2:+11725233 MS.gene84282:CDS
GTGTTTCAGTTTGATCCCAA+TGG 0.522130 2.2:+11725128 MS.gene84282:intron
TACCTTTGCCAAATGGAACT+GGG 0.522843 2.2:+11724491 MS.gene84282:CDS
CCAAGGTGCCAAGAAACATA+AGG 0.533396 2.2:-11722742 None:intergenic
TCCAACACGTCTAAGAAACC+GGG 0.536668 2.2:-11722652 None:intergenic
GGTAAAAGCTGATAAAGAAG+GGG 0.539956 2.2:+11724051 MS.gene84282:CDS
TGAGCCTGATATGATTGTCT+TGG 0.544113 2.2:+11724570 MS.gene84282:CDS
TGTATATGCCTTCAATGAGT+TGG 0.547153 2.2:+11724525 MS.gene84282:CDS
TGGAACAACCAACTCATTGA+AGG 0.547472 2.2:-11724533 None:intergenic
ATGGTTCATATGAAGAGAAA+CGG 0.548343 2.2:-11724386 None:intergenic
GGAATGCTCAAACACGATAC+CGG 0.549251 2.2:+11722601 MS.gene84282:CDS
TTGCGACGAGGCACAGTGAT+GGG 0.550593 2.2:+11725207 MS.gene84282:CDS
TCCCCAGTTCCATTTGGCAA+AGG 0.550741 2.2:-11724493 None:intergenic
GAACCACTCTGCGGATGAGA+TGG 0.551133 2.2:-11724421 None:intergenic
CCAAATGGAACTGGGGACAA+TGG 0.552008 2.2:+11724499 MS.gene84282:CDS
GATGAGCTAGGTGATGGAAA+AGG 0.557420 2.2:+11724448 MS.gene84282:CDS
ATGGTCTCAATCCTTAAAAG+AGG 0.557846 2.2:+11722709 MS.gene84282:CDS
AGGCAATGCTTAACAATGGA+AGG 0.558257 2.2:+11725152 MS.gene84282:CDS
CGACTTCTTATTGTGCAGGA+AGG 0.559555 2.2:+11725230 MS.gene84282:CDS
TGGTAAAAGCTGATAAAGAA+GGG 0.562108 2.2:+11724050 MS.gene84282:CDS
CATCGAAGACAGTGTAGTCC+CGG 0.564565 2.2:-11724137 None:intergenic
AACCAGGAGTGTGAAAAGAA+AGG 0.570148 2.2:-11722789 None:intergenic
TATGGAAATGGAACAGCGGA+GGG 0.571295 2.2:+11724337 MS.gene84282:CDS
TTCAGTTTGATCCCAATGGA+AGG 0.573033 2.2:+11725132 MS.gene84282:intron
CTCAAACACGATACCGGCAA+TGG 0.574453 2.2:+11722607 MS.gene84282:CDS
AGTGGTTCTATTGATGAGCT+AGG 0.577656 2.2:+11724436 MS.gene84282:CDS
GCAACAGAATCTTGTAGTAG+AGG 0.582073 2.2:-11725323 None:intergenic
GAATCTTGTAGTAGAGGCAA+TGG 0.582393 2.2:-11725317 None:intergenic
TCATATGAAGAGAAACGGTA+AGG 0.587254 2.2:-11724381 None:intergenic
TCAAGAATGTGCCACAACAA+AGG 0.592402 2.2:-11724081 None:intergenic
CAGTACCCATCAGCCTGAGA+AGG 0.593929 2.2:-11724229 None:intergenic
GTTTCTCTTCATATGAACCA+TGG 0.595487 2.2:+11724388 MS.gene84282:CDS
TACTGTTTCCTTAACAACGC+CGG 0.598032 2.2:+11724247 MS.gene84282:CDS
CTTGCGACGAGGCACAGTGA+TGG 0.603407 2.2:+11725206 MS.gene84282:CDS
CAGCCTGAGAAGGCTGAGCA+TGG 0.607738 2.2:-11724219 None:intergenic
TGGAAGGCAATGCTTAACAA+TGG 0.612899 2.2:+11725148 MS.gene84282:CDS
TCTATTGATGAGCTAGGTGA+TGG 0.615901 2.2:+11724442 MS.gene84282:CDS
TGTGAAAAGAAAGGAGCTCA+GGG 0.616383 2.2:-11722780 None:intergenic
TTCTGTTGCCTATTATCCGG+AGG 0.618398 2.2:+11725337 MS.gene84282:CDS
CATATGAACCATGGATCATG+GGG 0.618564 2.2:+11724397 MS.gene84282:CDS
GGCTGAGCATGGTGACCAGG+AGG 0.619749 2.2:-11724208 None:intergenic
AGTTAATCTGTTCTCCACAA+AGG 0.625888 2.2:-11725419 None:intergenic
ACCTTTGCCAAATGGAACTG+GGG 0.627049 2.2:+11724492 MS.gene84282:CDS
GGATGAGAGCATGTCGACCA+AGG 0.628418 2.2:-11722759 None:intergenic
GTGCAGCATCCCATGATCCA+GGG 0.634352 2.2:-11724105 None:intergenic
TTATGGAAATGGAACAGCGG+AGG 0.635964 2.2:+11724336 MS.gene84282:CDS
TTTGACACAGGAATTGACCC+CGG 0.658755 2.2:+11722634 MS.gene84282:CDS
GTAAAAGCTGATAAAGAAGG+GGG 0.672379 2.2:+11724052 MS.gene84282:CDS
GGGCCATCTCATCCGCAGAG+TGG 0.701407 2.2:+11724418 MS.gene84282:CDS
TATGGCAACCAATACAGATG+CGG 0.714104 2.2:+11722531 None:intergenic
CCAACACGTCTAAGAAACCG+GGG 0.721257 2.2:-11722651 None:intergenic
TAGTTCATAGTCTTGCGACG+AGG 0.735316 2.2:+11725195 MS.gene84282:CDS
CGAAGACAGTGTAGTCCCGG+CGG 0.735641 2.2:-11724134 None:intergenic
TCATTATGGAAATGGAACAG+CGG 0.751642 2.2:+11724333 MS.gene84282:CDS
TCATCAATAGAACCACTCTG+CGG 0.759817 2.2:-11724430 None:intergenic
ATATGAACCATGGATCATGG+GGG 0.778228 2.2:+11724398 MS.gene84282:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTATTACATAATTTTTAA+TGG - chr2.2:11725393-11725412 None:intergenic 10.0%
!! AAAATACTGAAATGTTACAA+AGG - chr2.2:11723863-11723882 None:intergenic 20.0%
!! AAATACTGAAATGTTACAAA+GGG - chr2.2:11723862-11723881 None:intergenic 20.0%
!! AGTTAGTAGTTATTTAACAT+TGG + chr2.2:11723070-11723089 MS.gene84282:intron 20.0%
!! ATAGATATTGATGTTCATTA+TGG + chr2.2:11724319-11724338 MS.gene84282:CDS 20.0%
!!! AATAGATACACTTTAAAAGT+TGG - chr2.2:11723257-11723276 None:intergenic 20.0%
!!! GAACTTTTTAGAATTATCAT+AGG - chr2.2:11723778-11723797 None:intergenic 20.0%
!!! TCATAAACTATTTAGTTTAG+AGG + chr2.2:11722938-11722957 MS.gene84282:intron 20.0%
! AATACTGAAATGTTACAAAG+GGG - chr2.2:11723861-11723880 None:intergenic 25.0%
! ACCAACTTATAATGAGTTTA+TGG - chr2.2:11723671-11723690 None:intergenic 25.0%
! ACTATTAGAGAAAAGATAAG+AGG - chr2.2:11723930-11723949 None:intergenic 25.0%
! ATTGATGTTCATTATGGAAA+TGG + chr2.2:11724325-11724344 MS.gene84282:CDS 25.0%
! CCAACTTATAATGAGTTTAT+GGG - chr2.2:11723670-11723689 None:intergenic 25.0%
! CTATTAGAGAAAAGATAAGA+GGG - chr2.2:11723929-11723948 None:intergenic 25.0%
! GAAATAGCACAAAAAAGAAA+AGG - chr2.2:11724637-11724656 None:intergenic 25.0%
! TAATAGATAAAATGCCTTTG+TGG + chr2.2:11725405-11725424 MS.gene84282:CDS 25.0%
! TAGAAAAGTAATTCAATGCA+TGG - chr2.2:11723374-11723393 None:intergenic 25.0%
! TATGTAAAAACTTCACATGT+TGG - chr2.2:11723754-11723773 None:intergenic 25.0%
! TCACTTAAATTGTAAAAGCA+TGG - chr2.2:11723641-11723660 None:intergenic 25.0%
!! AACATTGGAAGTCAAATTTT+GGG + chr2.2:11723085-11723104 MS.gene84282:intron 25.0%
!! CATAATTCAGAATTCAAGTT+CGG + chr2.2:11723891-11723910 MS.gene84282:intron 25.0%
!! TAACATTGGAAGTCAAATTT+TGG + chr2.2:11723084-11723103 MS.gene84282:intron 25.0%
!! TGTCAAATTGTTTGAAGTAT+AGG - chr2.2:11723978-11723997 None:intergenic 25.0%
!!! GAGTTTAATTTTAGTGAATG+TGG - chr2.2:11725103-11725122 None:intergenic 25.0%
AATAAGCTGAAAACAACTCA+TGG - chr2.2:11724833-11724852 None:intergenic 30.0%
AATGTTAGCGACTAAATTGA+CGG + chr2.2:11722897-11722916 MS.gene84282:intron 30.0%
ACATAAACGCTTATCAGATA+AGG - chr2.2:11724965-11724984 None:intergenic 30.0%
ATGGTTCATATGAAGAGAAA+CGG - chr2.2:11724389-11724408 None:intergenic 30.0%
ATTGATACGGTGATAGTTTA+AGG + chr2.2:11722965-11722984 MS.gene84282:intron 30.0%
CAAGATTCATCACAATGAAT+CGG - chr2.2:11723304-11723323 None:intergenic 30.0%
CATAAACGCTTATCAGATAA+GGG - chr2.2:11724964-11724983 None:intergenic 30.0%
CCCATAAACTCATTATAAGT+TGG + chr2.2:11723667-11723686 MS.gene84282:intron 30.0%
GTTTAGAGGTTGAATTGATA+CGG + chr2.2:11722952-11722971 MS.gene84282:intron 30.0%
TAATTCAATGCATGGTTATC+AGG - chr2.2:11723366-11723385 None:intergenic 30.0%
TCATATCAGGCTCAAATTTA+TGG - chr2.2:11724564-11724583 None:intergenic 30.0%
TGGTAAAAGCTGATAAAGAA+GGG + chr2.2:11724050-11724069 MS.gene84282:CDS 30.0%
TGGTTTCATTGCATTTGTTT+AGG - chr2.2:11725049-11725068 None:intergenic 30.0%
TTCTTATAGCTAAGATCAGT+TGG + chr2.2:11723399-11723418 MS.gene84282:intron 30.0%
! AGACTTGCATATGACTTTTA+TGG + chr2.2:11724703-11724722 MS.gene84282:intron 30.0%
! GACTTGCATATGACTTTTAT+GGG + chr2.2:11724704-11724723 MS.gene84282:intron 30.0%
! TGAACAAAATTGACGTTTTC+TGG + chr2.2:11722572-11722591 MS.gene84282:CDS 30.0%
! TTGTTTAGGTTTGCATATCA+TGG - chr2.2:11725035-11725054 None:intergenic 30.0%
!! AGTCGCTAACATTTTAATGA+CGG - chr2.2:11722890-11722909 None:intergenic 30.0%
!! GGTTTTATAAGCCAATTTGT+GGG + chr2.2:11723688-11723707 MS.gene84282:intron 30.0%
!! TTAATGACGGACTAAATTGA+CGG - chr2.2:11722877-11722896 None:intergenic 30.0%
!!! TGGTTTTATAAGCCAATTTG+TGG + chr2.2:11723687-11723706 MS.gene84282:intron 30.0%
AAGTTGCTTATGCTTTGGTT+AGG + chr2.2:11724185-11724204 MS.gene84282:CDS 35.0%
ACAACCAAGACAATCATATC+AGG - chr2.2:11724577-11724596 None:intergenic 35.0%
ACAGGATAATCAAACACTCT+TGG - chr2.2:11725069-11725088 None:intergenic 35.0%
AGATTCTGTTGCCTATTATC+CGG + chr2.2:11725334-11725353 MS.gene84282:CDS 35.0%
ATGGAAGGCTATAGAGAAAT+TGG + chr2.2:11725167-11725186 MS.gene84282:CDS 35.0%
ATGGTCTCAATCCTTAAAAG+AGG + chr2.2:11722709-11722728 MS.gene84282:CDS 35.0%
ATGTTAGCGACTAAATTGAC+GGG + chr2.2:11722898-11722917 MS.gene84282:intron 35.0%
ATTGTTCTCATAAGCTATCG+TGG - chr2.2:11724868-11724887 None:intergenic 35.0%
CAAGAAACATAAGGAGAGAT+AGG - chr2.2:11722736-11722755 None:intergenic 35.0%
CCATAAATTTATCACTTCCG+AGG + chr2.2:11723483-11723502 MS.gene84282:intron 35.0%
CCTCGGAAGTGATAAATTTA+TGG - chr2.2:11723486-11723505 None:intergenic 35.0%
CTATCTCTCCTTATGTTTCT+TGG + chr2.2:11722734-11722753 MS.gene84282:CDS 35.0%
CTCAGAGTACATAAATGAAC+TGG + chr2.2:11724030-11724049 MS.gene84282:intron 35.0%
CTGGTAAAAGCTGATAAAGA+AGG + chr2.2:11724049-11724068 MS.gene84282:CDS 35.0%
GATATGATTGTCTTGGTTGT+AGG + chr2.2:11724577-11724596 MS.gene84282:CDS 35.0%
GGTAAAAGCTGATAAAGAAG+GGG + chr2.2:11724051-11724070 MS.gene84282:CDS 35.0%
GTAAAAGCTGATAAAGAAGG+GGG + chr2.2:11724052-11724071 MS.gene84282:CDS 35.0%
GTGCACACTATATTGATGTA+CGG + chr2.2:11723125-11723144 MS.gene84282:intron 35.0%
GTTTCTCTTCATATGAACCA+TGG + chr2.2:11724388-11724407 MS.gene84282:CDS 35.0%
TATCGTGCTGTAAACAACTT+GGG + chr2.2:11723438-11723457 MS.gene84282:intron 35.0%
TCATATGAACCATGGATCAT+GGG + chr2.2:11724396-11724415 MS.gene84282:CDS 35.0%
TCATATGAAGAGAAACGGTA+AGG - chr2.2:11724384-11724403 None:intergenic 35.0%
TCATTATGGAAATGGAACAG+CGG + chr2.2:11724333-11724352 MS.gene84282:CDS 35.0%
TGGAAAAGTTGCTTATGCTT+TGG + chr2.2:11724180-11724199 MS.gene84282:CDS 35.0%
TGGAAGGCTATAGAGAAATT+GGG + chr2.2:11725168-11725187 MS.gene84282:CDS 35.0%
TGTATATGCCTTCAATGAGT+TGG + chr2.2:11724525-11724544 MS.gene84282:CDS 35.0%
TGTTCATAACACCCACAAAT+TGG - chr2.2:11723702-11723721 None:intergenic 35.0%
TGTTTACATGCAACACTTGA+AGG + chr2.2:11725281-11725300 MS.gene84282:CDS 35.0%
TTATCGTGCTGTAAACAACT+TGG + chr2.2:11723437-11723456 MS.gene84282:intron 35.0%
TTCATATGAACCATGGATCA+TGG + chr2.2:11724395-11724414 MS.gene84282:CDS 35.0%
TTGAACATACCTTTGCCAAA+TGG + chr2.2:11724484-11724503 MS.gene84282:CDS 35.0%
TTGAACTTCTAATGACTGCA+CGG + chr2.2:11723530-11723549 MS.gene84282:intron 35.0%
TTGAAGTATAGGCTATAGCA+GGG - chr2.2:11723967-11723986 None:intergenic 35.0%
! AACGTCAATTTTGTTCACAC+TGG - chr2.2:11722569-11722588 None:intergenic 35.0%
! GCACATAATTGAGCACTTTT+CGG + chr2.2:11723582-11723601 MS.gene84282:intron 35.0%
! GGCTCAAATTTATGGATTGA+TGG - chr2.2:11724556-11724575 None:intergenic 35.0%
! TGCATATGACTTTTATGGGA+TGG + chr2.2:11724708-11724727 MS.gene84282:intron 35.0%
! TTTGAAGTATAGGCTATAGC+AGG - chr2.2:11723968-11723987 None:intergenic 35.0%
!! AAAAATTGAGAGTGCTAACC+AGG - chr2.2:11722808-11722827 None:intergenic 35.0%
!! GTACAGTTAGCTTTAGATTC+TGG + chr2.2:11724277-11724296 MS.gene84282:CDS 35.0%
!! TAATGACGGACTAAATTGAC+GGG - chr2.2:11722876-11722895 None:intergenic 35.0%
!!! AATGTGGCTTTGTTTTACAC+AGG - chr2.2:11725087-11725106 None:intergenic 35.0%
AAGCTATCGTGGAGAGTTTA+TGG - chr2.2:11724857-11724876 None:intergenic 40.0%
AATTGCTCCAGCTGAATTCA+AGG - chr2.2:11723812-11723831 None:intergenic 40.0%
AGGCAATGCTTAACAATGGA+AGG + chr2.2:11725152-11725171 MS.gene84282:CDS 40.0%
ATACCTTTGCCAAATGGAAC+TGG + chr2.2:11724490-11724509 MS.gene84282:CDS 40.0%
ATATGAACCATGGATCATGG+GGG + chr2.2:11724398-11724417 MS.gene84282:CDS 40.0%
ATTCTTGAACCCTGGATCAT+GGG + chr2.2:11724096-11724115 MS.gene84282:CDS 40.0%
CAGTATTCCTTGAATTCAGC+TGG + chr2.2:11723802-11723821 MS.gene84282:intron 40.0%
CATATGAACCATGGATCATG+GGG + chr2.2:11724397-11724416 MS.gene84282:CDS 40.0%
CTCAGACAGAGTCAAAAACA+TGG + chr2.2:11722690-11722709 MS.gene84282:CDS 40.0%
GAATCTTGTAGTAGAGGCAA+TGG - chr2.2:11725320-11725339 None:intergenic 40.0%
GCAACAGAATCTTGTAGTAG+AGG - chr2.2:11725326-11725345 None:intergenic 40.0%
GTGTTTCAGTTTGATCCCAA+TGG + chr2.2:11725128-11725147 MS.gene84282:intron 40.0%
TACCTTTGCCAAATGGAACT+GGG + chr2.2:11724491-11724510 MS.gene84282:CDS 40.0%
TACTGTTTCCTTAACAACGC+CGG + chr2.2:11724247-11724266 MS.gene84282:CDS 40.0%
TCAAGAATGTGCCACAACAA+AGG - chr2.2:11724084-11724103 None:intergenic 40.0%
TCATCAATAGAACCACTCTG+CGG - chr2.2:11724433-11724452 None:intergenic 40.0%
TCTATTGATGAGCTAGGTGA+TGG + chr2.2:11724442-11724461 MS.gene84282:CDS 40.0%
TGAGCCTGATATGATTGTCT+TGG + chr2.2:11724570-11724589 MS.gene84282:CDS 40.0%
TGGAACAACCAACTCATTGA+AGG - chr2.2:11724536-11724555 None:intergenic 40.0%
TGGAAGGCAATGCTTAACAA+TGG + chr2.2:11725148-11725167 MS.gene84282:CDS 40.0%
TGTGAAAAGAAAGGAGCTCA+GGG - chr2.2:11722783-11722802 None:intergenic 40.0%
TGTGTCAAAAACTCCATTGC+CGG - chr2.2:11722623-11722642 None:intergenic 40.0%
TTCAGTTTGATCCCAATGGA+AGG + chr2.2:11725132-11725151 MS.gene84282:intron 40.0%
TTCCAACACGTCTAAGAAAC+CGG - chr2.2:11722656-11722675 None:intergenic 40.0%
! AACCAGGAGTGTGAAAAGAA+AGG - chr2.2:11722792-11722811 None:intergenic 40.0%
! AGTGGTTCTATTGATGAGCT+AGG + chr2.2:11724436-11724455 MS.gene84282:CDS 40.0%
! GAGAGATAGGACCTCTTTTA+AGG - chr2.2:11722723-11722742 None:intergenic 40.0%
! GTTAAGCATTGCCTTCCATT+GGG - chr2.2:11725146-11725165 None:intergenic 40.0%
! TGGGTGTTATGAACATGTCA+TGG + chr2.2:11723707-11723726 MS.gene84282:intron 40.0%
! TGTTAAGCATTGCCTTCCAT+TGG - chr2.2:11725147-11725166 None:intergenic 40.0%
! TTGACTCTGTCTGAGTTTTC+AGG - chr2.2:11722685-11722704 None:intergenic 40.0%
!! ATTGACGTTTTCTGGCATGA+AGG + chr2.2:11722580-11722599 MS.gene84282:CDS 40.0%
!! CTAGGTGATGGAAAAGGTTA+TGG + chr2.2:11724454-11724473 MS.gene84282:CDS 40.0%
!! GACTTTTATGGGATGGACTT+AGG + chr2.2:11724715-11724734 MS.gene84282:intron 40.0%
AACTTCTAATGACTGCACGG+TGG + chr2.2:11723533-11723552 MS.gene84282:intron 45.0%
ACCTTTGCCAAATGGAACTG+GGG + chr2.2:11724492-11724511 MS.gene84282:CDS 45.0%
ACTTCTAATGACTGCACGGT+GGG + chr2.2:11723534-11723553 MS.gene84282:intron 45.0%
AGCTAACTGTACTGCTAGAC+CGG - chr2.2:11724269-11724288 None:intergenic 45.0%
CATTCTTGAACCCTGGATCA+TGG + chr2.2:11724095-11724114 MS.gene84282:CDS 45.0%
CCTTATGTTTCTTGGCACCT+TGG + chr2.2:11722742-11722761 MS.gene84282:CDS 45.0%
CGACTTCTTATTGTGCAGGA+AGG + chr2.2:11725230-11725249 MS.gene84282:CDS 45.0%
CTTCTTATTGTGCAGGAAGG+TGG + chr2.2:11725233-11725252 MS.gene84282:CDS 45.0%
GGAATGCTCAAACACGATAC+CGG + chr2.2:11722601-11722620 MS.gene84282:CDS 45.0%
GGTGTGTATTACGCTCTGTT+TGG - chr2.2:11725014-11725033 None:intergenic 45.0%
GTGTGAAAAGAAAGGAGCTC+AGG - chr2.2:11722784-11722803 None:intergenic 45.0%
TATGGAAATGGAACAGCGGA+GGG + chr2.2:11724337-11724356 MS.gene84282:CDS 45.0%
TCCAACACGTCTAAGAAACC+GGG - chr2.2:11722655-11722674 None:intergenic 45.0%
TTATGGAAATGGAACAGCGG+AGG + chr2.2:11724336-11724355 MS.gene84282:CDS 45.0%
TTCTGCTACCGCATCTGTAT+TGG - chr2.2:11722542-11722561 None:intergenic 45.0%
TTCTGTTGCCTATTATCCGG+AGG + chr2.2:11725337-11725356 MS.gene84282:CDS 45.0%
TTTGACACAGGAATTGACCC+CGG + chr2.2:11722634-11722653 MS.gene84282:CDS 45.0%
! CCAAGGTGCCAAGAAACATA+AGG - chr2.2:11722745-11722764 None:intergenic 45.0%
! CTCCTTTCTTTTCACACTCC+TGG + chr2.2:11722787-11722806 MS.gene84282:CDS 45.0%
! GGATGGACTTAGGACATGTT+TGG + chr2.2:11724725-11724744 MS.gene84282:intron 45.0%
! GGCAATGGAGTTTTTGACAC+AGG + chr2.2:11722622-11722641 MS.gene84282:CDS 45.0%
! TAGTTCATAGTCTTGCGACG+AGG + chr2.2:11725195-11725214 MS.gene84282:CDS 45.0%
! TCGATGAAGCACTTGCTTGA+CGG + chr2.2:11724154-11724173 MS.gene84282:CDS 45.0%
!! GATGAGCTAGGTGATGGAAA+AGG + chr2.2:11724448-11724467 MS.gene84282:CDS 45.0%
ACAGAAAACGTCTCGTCCTC+CGG - chr2.2:11725356-11725375 None:intergenic 50.0%
ACTTCCGAGGCACAGTAGAA+GGG + chr2.2:11723496-11723515 MS.gene84282:intron 50.0%
CATCGAAGACAGTGTAGTCC+CGG - chr2.2:11724140-11724159 None:intergenic 50.0%
CCAAATGGAACTGGGGACAA+TGG + chr2.2:11724499-11724518 MS.gene84282:CDS 50.0%
CCAACACGTCTAAGAAACCG+GGG - chr2.2:11722654-11722673 None:intergenic 50.0%
CCATTGTCCCCAGTTCCATT+TGG - chr2.2:11724502-11724521 None:intergenic 50.0%
CTCAAACACGATACCGGCAA+TGG + chr2.2:11722607-11722626 MS.gene84282:CDS 50.0%
CTTCTAATGACTGCACGGTG+GGG + chr2.2:11723535-11723554 MS.gene84282:intron 50.0%
GGGGGAAAGATCCTTTGTTG+TGG + chr2.2:11724070-11724089 MS.gene84282:CDS 50.0%
TATGCTTTGGTTAGGCCTCC+TGG + chr2.2:11724193-11724212 MS.gene84282:CDS 50.0%
TCCCCAGTTCCATTTGGCAA+AGG - chr2.2:11724496-11724515 None:intergenic 50.0%
TGGGCGACTTCTTATTGTGC+AGG + chr2.2:11725226-11725245 MS.gene84282:CDS 50.0%
TGTGGCACATTCTTGAACCC+TGG + chr2.2:11724088-11724107 MS.gene84282:CDS 50.0%
! AAGCACTTGCTTGACGGACA+TGG + chr2.2:11724160-11724179 MS.gene84282:CDS 50.0%
AGTGCAGCATCCCATGATCC+AGG - chr2.2:11724109-11724128 None:intergenic 55.0%
CACTTCCGAGGCACAGTAGA+AGG + chr2.2:11723495-11723514 MS.gene84282:intron 55.0%
CAGTACCCATCAGCCTGAGA+AGG - chr2.2:11724232-11724251 None:intergenic 55.0%
CCCCGGTTTCTTAGACGTGT+TGG + chr2.2:11722651-11722670 MS.gene84282:CDS 55.0%
CGTCTCGTCCTCCGGATAAT+AGG - chr2.2:11725348-11725367 None:intergenic 55.0%
CTCAGCCTTCTCAGGCTGAT+GGG + chr2.2:11724224-11724243 MS.gene84282:CDS 55.0%
CTGCTAGACCGGCGTTGTTA+AGG - chr2.2:11724258-11724277 None:intergenic 55.0%
GAACCACTCTGCGGATGAGA+TGG - chr2.2:11724424-11724443 None:intergenic 55.0%
GCATCCCTTCTACTGTGCCT+CGG - chr2.2:11723503-11723522 None:intergenic 55.0%
GTGCAGCATCCCATGATCCA+GGG - chr2.2:11724108-11724127 None:intergenic 55.0%
TCACCATGCTCAGCCTTCTC+AGG + chr2.2:11724216-11724235 MS.gene84282:CDS 55.0%
TTGCGACGAGGCACAGTGAT+GGG + chr2.2:11725207-11725226 MS.gene84282:CDS 55.0%
! GGATGAGAGCATGTCGACCA+AGG - chr2.2:11722762-11722781 None:intergenic 55.0%
ATGCTGCACTTCTTGCCGCC+GGG + chr2.2:11724119-11724138 MS.gene84282:CDS 60.0%
CAGCCTGAGAAGGCTGAGCA+TGG - chr2.2:11724222-11724241 None:intergenic 60.0%
CGAAGACAGTGTAGTCCCGG+CGG - chr2.2:11724137-11724156 None:intergenic 60.0%
CTTGCGACGAGGCACAGTGA+TGG + chr2.2:11725206-11725225 MS.gene84282:CDS 60.0%
GAAGGCTGAGCATGGTGACC+AGG - chr2.2:11724214-11724233 None:intergenic 60.0%
GAGATGGCCCCCATGATCCA+TGG - chr2.2:11724408-11724427 None:intergenic 60.0%
GATGCTGCACTTCTTGCCGC+CGG + chr2.2:11724118-11724137 MS.gene84282:CDS 60.0%
GCACGGTGGGGATTACTCAC+TGG + chr2.2:11723547-11723566 MS.gene84282:intron 60.0%
GCTCAGCCTTCTCAGGCTGA+TGG + chr2.2:11724223-11724242 MS.gene84282:CDS 60.0%
GGCTGAGCATGGTGACCAGG+AGG - chr2.2:11724211-11724230 None:intergenic 65.0%
GGGCCATCTCATCCGCAGAG+TGG + chr2.2:11724418-11724437 MS.gene84282:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 11722532 11725439 11722532 ID=MS.gene84282
chr2.2 mRNA 11722532 11725439 11722532 ID=MS.gene84282.t1;Parent=MS.gene84282
chr2.2 exon 11722532 11722808 11722532 ID=MS.gene84282.t1.exon1;Parent=MS.gene84282.t1
chr2.2 CDS 11722532 11722808 11722532 ID=cds.MS.gene84282.t1;Parent=MS.gene84282.t1
chr2.2 exon 11724035 11724615 11724035 ID=MS.gene84282.t1.exon2;Parent=MS.gene84282.t1
chr2.2 CDS 11724035 11724615 11724035 ID=cds.MS.gene84282.t1;Parent=MS.gene84282.t1
chr2.2 exon 11725137 11725439 11725137 ID=MS.gene84282.t1.exon3;Parent=MS.gene84282.t1
chr2.2 CDS 11725137 11725439 11725137 ID=cds.MS.gene84282.t1;Parent=MS.gene84282.t1
Gene Sequence

>MS.gene84282

ATGGCAACCAATACAGATGCGGTAGCAGAATCTTCCAGTGTGAACAAAATTGACGTTTTCTGGCATGAAGGAATGCTCAAACACGATACCGGCAATGGAGTTTTTGACACAGGAATTGACCCCGGTTTCTTAGACGTGTTGGAAAAACATCCTGAAAACTCAGACAGAGTCAAAAACATGGTCTCAATCCTTAAAAGAGGTCCTATCTCTCCTTATGTTTCTTGGCACCTTGGTCGACATGCTCTCATCCCTGAGCTCCTTTCTTTTCACACTCCTGGTTAGCACTCTCAATTTTTTCACTTTCACTCTTGTTTTCAGTTCTAGTCTTAAAATATATAATACCCGTCAATTTAGTCCGTCATTAAAATGTTAGCGACTAAATTGACGGGTTTTATATATTTCAATTTCATAAACTATTTAGTTTAGAGGTTGAATTGATACGGTGATAGTTTAAGGACTAAATCAATAGTTTATTAGATAAAAAAATTACGCTTTGCATGCAAAGCTAAAAGTTTATAGATGTGAGTTCAATCACTTTAGTTAGTAGTTATTTAACATTGGAAGTCAAATTTTGGGTTTGTGAAGATATTCTTGTGCACACTATATTGATGTACGGTGTAATTTAGACATGAATGCTATCTTGAATTCAAATCATTGTGATAGTTTAATGTGCTGTTTGCAGCATATTATCTTATGATACATGAGAATTGCATCTCGATTCACCAACTTTTAAAGTGTATCTATTTAGACATGAATCTCATCTTGAATTCCGATTCATTGTGATGAATCTTGATTCACAAAAAAGATCTTGCAACACTATTTCAATCTCGACCTGATAACCATGCATTGAATTACTTTTCTAGATCATTCTTATAGCTAAGATCAGTTGGCAGTTCGTTAGTTTGTTATCGTGCTGTAAACAACTTGGGCAATGTTTAGATCTGCAGTGCACCATAAATTTATCACTTCCGAGGCACAGTAGAAGGGATGCTATACATTTGAACTTCTAATGACTGCACGGTGGGGATTACTCACTGGTCTTACAAACATGCACATAATTGAGCACTTTTCGGTAAACATTTTTCATATAAGAGCTTATAGATACACCATGCTTTTACAATTTAAGTGAAAGTGTCCCATAAACTCATTATAAGTTGGTTTTATAAGCCAATTTGTGGGTGTTATGAACATGTCATGGACTATTTTTCATAAATTCTTTCCAACATGTGAAGTTTTTACATATCCTATGATAATTCTAAAAAGTTCTTTTCAGTATTCCTTGAATTCAGCTGGAGCAATTCTGCTACAAACACACTATATATATAACCCCTTTGTAACATTTCAGTATTTTTGAGAAATCATAATTCAGAATTCAAGTTCGGTTTTCACAATTTCCCTCTTATCTTTTCTCTAATAGTCTCTCATTTTCTTACCCTGCTATAGCCTATACTTCAAACAATTTGACACAGTGAATGATATAATTTCAATGCTGTAATTTCTCAGAGTACATAAATGAACTGGTAAAAGCTGATAAAGAAGGGGGAAAGATCCTTTGTTGTGGCACATTCTTGAACCCTGGATCATGGGATGCTGCACTTCTTGCCGCCGGGACTACACTGTCTTCGATGAAGCACTTGCTTGACGGACATGGAAAAGTTGCTTATGCTTTGGTTAGGCCTCCTGGTCACCATGCTCAGCCTTCTCAGGCTGATGGGTACTGTTTCCTTAACAACGCCGGTCTAGCAGTACAGTTAGCTTTAGATTCTGGATGTAAGAAAGTTGCAGTTATAGATATTGATGTTCATTATGGAAATGGAACAGCGGAGGGATTTTATTCATCTGATAAAGTCCTTACCGTTTCTCTTCATATGAACCATGGATCATGGGGGCCATCTCATCCGCAGAGTGGTTCTATTGATGAGCTAGGTGATGGAAAAGGTTATGGTTATAACTTGAACATACCTTTGCCAAATGGAACTGGGGACAATGGATATGTATATGCCTTCAATGAGTTGGTTGTTCCATCAATCCATAAATTTGAGCCTGATATGATTGTCTTGGTTGTAGGACAAGACTCGAGTGCAGTAAGTTATTCTATTTATCCTTTTCTTTTTTGTGCTATTTCAATTTATAGTTTGATTGTGATTAGCTTTTTATTGACAAGTTTTTGTAGACTTGCATATGACTTTTATGGGATGGACTTAGGACATGTTTGGATTAACTTATTTGAGTTTATCTACTGACATAAGCACTTGTGAGACTATTTTAGAGAGCTTATGAAAACAGCTTATTGCATGTCCATGAGTTGTTTTCAGCTTATTTCCATAAACTCTCCACGATAGCTTATGAGAACAATTTATTACTTATATGACAACAATTCGACTTTATTTTATCTTTTGTTATAGAAATAGAAACAACTTATACATAAGCCCTTATCTGATAAGCGTTTATGTTATAAACGCTTAACTATATTGTTTATCCAAACAGAGCGTAATACACACCATGATATGCAAACCTAAACAAATGCAATGAAACCAAGAGTGTTTGATTATCCTGTGTAAAACAAAGCCACATTCACTAAAATTAAACTCTTCATGTGTTTCAGTTTGATCCCAATGGAAGGCAATGCTTAACAATGGAAGGCTATAGAGAAATTGGGCGTATAGTTCATAGTCTTGCGACGAGGCACAGTGATGGGCGACTTCTTATTGTGCAGGAAGGTGGATATCATGTAACATATTCAGCATATTGTTTACATGCAACACTTGAAGGTGTTCTCAATCTACCATTGCCTCTACTACAAGATTCTGTTGCCTATTATCCGGAGGACGAGACGTTTTCTGTCAAAGTTATAGATGCCATTAAAAATTATGTAATAGATAAAATGCCTTTGTGGAGAACAGATTAA
Protein sequence

>MS.gene84282.t1

MATNTDAVAESSSVNKIDVFWHEGMLKHDTGNGVFDTGIDPGFLDVLEKHPENSDRVKNMVSILKRGPISPYVSWHLGRHALIPELLSFHTPEYINELVKADKEGGKILCCGTFLNPGSWDAALLAAGTTLSSMKHLLDGHGKVAYALVRPPGHHAQPSQADGYCFLNNAGLAVQLALDSGCKKVAVIDIDVHYGNGTAEGFYSSDKVLTVSLHMNHGSWGPSHPQSGSIDELGDGKGYGYNLNIPLPNGTGDNGYVYAFNELVVPSIHKFEPDMIVLVVGQDSSAFDPNGRQCLTMEGYREIGRIVHSLATRHSDGRLLIVQEGGYHVTYSAYCLHATLEGVLNLPLPLLQDSVAYYPEDETFSVKVIDAIKNYVIDKMPLWRTD