AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84393

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84393.t1 MTR_2g445230 97.213 287 8 0 1 287 1 287 0.0 566
MS.gene84393.t1 MTR_4g124560 30.769 273 161 7 11 280 93 340 2.12e-26 106
MS.gene84393.t1 MTR_4g024850 28.148 270 156 7 20 276 90 334 1.69e-22 95.9
MS.gene84393.t1 MTR_2g093050 30.466 279 148 9 26 281 91 346 4.06e-22 95.5
MS.gene84393.t1 MTR_4g111780 28.148 270 156 8 20 276 90 334 8.80e-22 93.6
MS.gene84393.t1 MTR_1g102670 33.333 183 106 4 18 197 87 256 3.17e-17 80.5
MS.gene84393.t1 MTR_4g062540 28.631 241 134 9 8 242 78 286 3.66e-12 65.9
MS.gene84393.t1 MTR_4g062540 28.689 244 137 9 8 242 78 293 6.59e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84393.t1 AT5G57450 51.220 287 117 5 16 280 18 303 5.30e-94 280
MS.gene84393.t1 AT5G57450 51.220 287 117 5 16 280 18 303 5.30e-94 280
MS.gene84393.t1 AT5G20850 32.000 275 159 8 3 276 90 337 1.56e-26 106
MS.gene84393.t1 AT5G20850 34.500 200 118 5 3 201 90 277 4.33e-22 94.4
MS.gene84393.t1 AT3G22880 30.534 262 150 7 18 276 107 339 1.94e-21 92.8
MS.gene84393.t1 AT2G45280 27.888 251 142 7 5 239 92 319 4.28e-21 92.0
MS.gene84393.t1 AT2G45280 27.888 251 142 7 5 239 116 343 5.14e-21 92.0
MS.gene84393.t1 AT3G22880 30.279 251 143 7 18 265 107 328 2.29e-19 87.0
MS.gene84393.t1 AT2G28560 29.924 264 154 8 26 276 59 304 2.36e-19 87.0
MS.gene84393.t1 AT2G28560 29.924 264 154 8 26 276 91 336 2.89e-19 87.0
MS.gene84393.t1 AT2G28560 29.924 264 154 8 26 276 91 336 2.89e-19 87.0
MS.gene84393.t1 AT2G28560 29.924 264 154 8 26 276 91 336 2.89e-19 87.0
MS.gene84393.t1 AT2G28560 29.924 264 154 8 26 276 91 336 4.61e-19 86.7
MS.gene84393.t1 AT1G07745 31.250 240 133 7 8 243 60 271 1.89e-18 84.0
MS.gene84393.t1 AT1G07745 31.250 240 133 7 8 243 78 289 2.70e-18 83.6
MS.gene84393.t1 AT2G28560 33.333 177 100 5 26 196 59 223 3.37e-15 73.9
MS.gene84393.t1 AT1G07745 35.099 151 84 5 8 154 60 200 1.16e-13 68.9
MS.gene84393.t1 AT1G07745 35.099 151 84 5 8 154 78 218 3.24e-13 68.2
MS.gene84393.t1 AT1G07745 35.099 151 84 5 8 154 78 218 3.24e-13 68.2

Find 92 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAGGAAATTGAGAACATTT+AGG 0.234968 2.3:+38522544 MS.gene84393:CDS
TAGGAAATTGAGAACATTTA+GGG 0.270441 2.3:+38522545 MS.gene84393:CDS
TTCTTGTCGAGGGAGGAATT+TGG 0.275226 2.3:+38522513 MS.gene84393:CDS
TCTTGTCGAGGGAGGAATTT+GGG 0.281757 2.3:+38522514 MS.gene84393:CDS
TAGAAGGGTTTCTCCTGCTT+TGG 0.284357 2.3:+38522455 MS.gene84393:CDS
AGGAATTTGGGGAGGGTAGT+AGG 0.294515 2.3:+38522526 MS.gene84393:CDS
AGAAGGGTTTCTCCTGCTTT+GGG 0.302117 2.3:+38522456 MS.gene84393:CDS
GGACGAGTTGAAGGCAGATT+TGG 0.303480 2.3:-38521954 None:intergenic
TGTTCTGAGTTTGTTATTAC+AGG 0.329349 2.3:+38522597 MS.gene84393:CDS
AAACGTTGGCGGAGAGGTTT+GGG 0.342466 2.3:+38522340 MS.gene84393:CDS
AAAACGTTGGCGGAGAGGTT+TGG 0.344119 2.3:+38522339 MS.gene84393:CDS
TCCTGCTTTGGGTTTGTCAT+GGG 0.345513 2.3:+38522467 MS.gene84393:CDS
ACTTGTATTCCTCGGGTAGA+AGG 0.352847 2.3:+38522439 MS.gene84393:CDS
CTCCTGCTTTGGGTTTGTCA+TGG 0.358577 2.3:+38522466 MS.gene84393:CDS
GGTTGTGGTTGTTACAAATC+AGG 0.380826 2.3:+38522365 MS.gene84393:CDS
GACGAGTTGAAGGCAGATTT+GGG 0.382407 2.3:-38521953 None:intergenic
AGAATCAAGGTCTGAGGATT+GGG 0.393830 2.3:+38522406 MS.gene84393:CDS
TCCGCTTTCGGCGACGAGTT+CGG 0.394080 2.3:-38521920 None:intergenic
ACAACCTACGCTGCATTTCT+CGG 0.395622 2.3:-38521848 None:intergenic
GATTCTAGAATTCACACAAT+TGG 0.404454 2.3:-38522490 None:intergenic
TCAACTACGATAACTCTAAC+AGG 0.405318 2.3:-38522222 None:intergenic
GGAGAGGTTTGGGTTGGTTG+TGG 0.408109 2.3:+38522350 MS.gene84393:CDS
GCGGATGGGGAAAGGGTATT+CGG 0.409787 2.3:-38522037 None:intergenic
GAGTTGTTTGAGGCGGCGGA+TGG 0.425263 2.3:-38522052 None:intergenic
GCGGAGAGGCCGCCGTGGGA+GGG 0.444564 2.3:-38521994 None:intergenic
GAGAATCAAGGTCTGAGGAT+TGG 0.452562 2.3:+38522405 MS.gene84393:CDS
TGAATTTGAAAACTCTATGT+TGG 0.454312 2.3:+38522269 MS.gene84393:CDS
GCGAGGCAGCGATCAAGAAC+GGG 0.454625 2.3:-38521871 None:intergenic
CTCGTCGCCGAAAGCGGAAG+CGG 0.460895 2.3:+38521925 MS.gene84393:CDS
TTGAGGCGGCGGATGGGGAA+AGG 0.465846 2.3:-38522045 None:intergenic
GAGAGGGTCAGTTCCCAGTC+CGG 0.478566 2.3:-38522100 None:intergenic
GTGAGTAAAATCTCAATGTC+AGG 0.480727 2.3:-38522177 None:intergenic
GTTGTTTGAGGCGGCGGATG+GGG 0.483903 2.3:-38522050 None:intergenic
TGAGGCGGCGGATGGGGAAA+GGG 0.485959 2.3:-38522044 None:intergenic
AGTTGTTTGAGGCGGCGGAT+GGG 0.487558 2.3:-38522051 None:intergenic
GAGCCATGAGGACGAGTTGA+AGG 0.488743 2.3:-38521963 None:intergenic
GGGAGAGTTGTTTGAGGCGG+CGG 0.494929 2.3:-38522056 None:intergenic
TTCTAGAATCTTCTTGTCGA+GGG 0.500424 2.3:+38522503 MS.gene84393:CDS
TCAGGTAGTTGATTTGATTG+AGG 0.500515 2.3:+38522383 MS.gene84393:CDS
CCTCTCATCTAATCCCGGAC+TGG 0.500621 2.3:+38522086 MS.gene84393:CDS
GAGAGGCCGCCGTGGGAGGG+TGG 0.504686 2.3:-38521991 None:intergenic
CTCTCATCTAATCCCGGACT+GGG 0.507437 2.3:+38522087 MS.gene84393:CDS
CTTGTATTCCTCGGGTAGAA+GGG 0.514483 2.3:+38522440 MS.gene84393:CDS
TTTAGTGACTTGTATTCCTC+GGG 0.514857 2.3:+38522432 MS.gene84393:CDS
GGCGAGGCAGCGATCAAGAA+CGG 0.516398 2.3:-38521872 None:intergenic
AGAGGGTCAGTTCCCAGTCC+GGG 0.524083 2.3:-38522099 None:intergenic
TGGTGGCTTGAAAACGTTGG+CGG 0.526981 2.3:+38522329 MS.gene84393:CDS
GCCCATGACAAACCCAAAGC+AGG 0.529237 2.3:-38522468 None:intergenic
CTTGTCGAGGGAGGAATTTG+GGG 0.532305 2.3:+38522515 MS.gene84393:CDS
CTGCCTTCAACTCGTCCTCA+TGG 0.538340 2.3:+38521960 MS.gene84393:CDS
ACCGAACTCGTCGCCGAAAG+CGG 0.541419 2.3:+38521919 MS.gene84393:CDS
GATTTGATTGAGGAGAATCA+AGG 0.542964 2.3:+38522393 MS.gene84393:CDS
TTGGTGTAGAGATGGGTCAA+AGG 0.545664 2.3:+38522631 MS.gene84393:CDS
GAGTTTGTTATTACAGGTGA+AGG 0.546187 2.3:+38522603 MS.gene84393:CDS
TCTTTCCTCTCATCTAATCC+CGG 0.550097 2.3:+38522081 MS.gene84393:CDS
GAACAACATTGAGGTAAATG+AGG 0.557737 2.3:-38522579 None:intergenic
AGCGGAGAGGCCGCCGTGGG+AGG 0.563631 2.3:-38521995 None:intergenic
TTGTGGGGATGCCGCCGGCG+AGG 0.565361 2.3:-38521888 None:intergenic
GTTGGCGGAGAGGTTTGGGT+TGG 0.566051 2.3:+38522344 MS.gene84393:CDS
GTTCTTGATCGCTGCCTCGC+CGG 0.566580 2.3:+38521874 MS.gene84393:CDS
GGAGGAAAACGCGGTCGAGA+GGG 0.580748 2.3:-38522116 None:intergenic
TTCTGGTGGCTTGAAAACGT+TGG 0.580761 2.3:+38522326 MS.gene84393:CDS
ATTAGATGAGAGGAAAGAGC+GGG 0.597816 2.3:-38522076 None:intergenic
ATTCTAGAATCTTCTTGTCG+AGG 0.599564 2.3:+38522502 MS.gene84393:CDS
AGCGGGAGAGTTGTTTGAGG+CGG 0.599613 2.3:-38522059 None:intergenic
AAGAGCGGGAGAGTTGTTTG+AGG 0.600193 2.3:-38522062 None:intergenic
TACTCACTTACTGGAAATCG+AGG 0.601914 2.3:+38522193 MS.gene84393:CDS
GCTTGAAAACGTTGGCGGAG+AGG 0.602170 2.3:+38522334 MS.gene84393:CDS
GCTCAGCTTCCACCCTCCCA+CGG 0.602814 2.3:+38521982 MS.gene84393:CDS
CGGAGGAAAACGCGGTCGAG+AGG 0.605398 2.3:-38522117 None:intergenic
GTCGAGGGAGGAATTTGGGG+AGG 0.605528 2.3:+38522518 MS.gene84393:CDS
TAGAATCTTCTTGTCGAGGG+AGG 0.607196 2.3:+38522506 MS.gene84393:CDS
TTGAGGAGAATCAAGGTCTG+AGG 0.610573 2.3:+38522400 MS.gene84393:CDS
CCAGTCCGGGATTAGATGAG+AGG 0.614842 2.3:-38522086 None:intergenic
ATGAAGCGGAGAGGCCGCCG+TGG 0.621821 2.3:-38521999 None:intergenic
TGAAGCGGAGAGGCCGCCGT+GGG 0.625174 2.3:-38521998 None:intergenic
CTTGATCGCTGCCTCGCCGG+CGG 0.631545 2.3:+38521877 MS.gene84393:CDS
GTAGAGATGGGTCAAAGGAA+TGG 0.632565 2.3:+38522636 MS.gene84393:CDS
AAAACCGAGAAATGCAGCGT+AGG 0.635039 2.3:+38521844 MS.gene84393:CDS
TCGAGGGAGGAATTTGGGGA+GGG 0.635636 2.3:+38522519 MS.gene84393:CDS
ACAAACTCAGAACAACATTG+AGG 0.651504 2.3:-38522588 None:intergenic
GATTAGATGAGAGGAAAGAG+CGG 0.651758 2.3:-38522077 None:intergenic
GAATATGTAGAGTGATGAAG+CGG 0.655313 2.3:-38522013 None:intergenic
AGGAGAAACCCTTCTACCCG+AGG 0.678505 2.3:-38522448 None:intergenic
CCTCCGCGGAATTTACTCTG+CGG 0.689572 2.3:+38522134 MS.gene84393:CDS
TGTAGAGTGATGAAGCGGAG+AGG 0.704294 2.3:-38522008 None:intergenic
CCGCAGAGTAAATTCCGCGG+AGG 0.709414 2.3:-38522134 None:intergenic
AAATTCCGCGGAGGAAAACG+CGG 0.710936 2.3:-38522125 None:intergenic
AGGGTGGAAGCTGAGCCATG+AGG 0.722612 2.3:-38521975 None:intergenic
TCTCCGCAGAGTAAATTCCG+CGG 0.737709 2.3:-38522137 None:intergenic
CAATAGCGAGATGAGCACAG+CGG 0.759325 2.3:+38521792 None:intergenic
CAGCTTCCACCCTCCCACGG+CGG 0.761661 2.3:+38521985 MS.gene84393:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TAGGAAATTGAGAACATTTA+GGG + chr2.3:38522545-38522564 MS.gene84393:CDS 25.0%
! TGAATTTGAAAACTCTATGT+TGG + chr2.3:38522269-38522288 MS.gene84393:CDS 25.0%
ACCAGAAATCTTGAAAAACA+AGG - chr2.3:38522313-38522332 None:intergenic 30.0%
GTAGGAAATTGAGAACATTT+AGG + chr2.3:38522544-38522563 MS.gene84393:CDS 30.0%
! TTGAGATTTTACTCACTTAC+TGG + chr2.3:38522184-38522203 MS.gene84393:CDS 30.0%
!! GATTCTAGAATTCACACAAT+TGG - chr2.3:38522493-38522512 None:intergenic 30.0%
!! TGTTCTGAGTTTGTTATTAC+AGG + chr2.3:38522597-38522616 MS.gene84393:CDS 30.0%
!! TTTTAGTGACTTGTATTCCT+CGG + chr2.3:38522431-38522450 MS.gene84393:CDS 30.0%
!!! TCCTTGTTTTTCAAGATTTC+TGG + chr2.3:38522309-38522328 MS.gene84393:CDS 30.0%
!!! TTGTTTTTCAAGATTTCTGG+TGG + chr2.3:38522312-38522331 MS.gene84393:CDS 30.0%
ACAAACTCAGAACAACATTG+AGG - chr2.3:38522591-38522610 None:intergenic 35.0%
GAACAACATTGAGGTAAATG+AGG - chr2.3:38522582-38522601 None:intergenic 35.0%
GAATATGTAGAGTGATGAAG+CGG - chr2.3:38522016-38522035 None:intergenic 35.0%
GATTTGATTGAGGAGAATCA+AGG + chr2.3:38522393-38522412 MS.gene84393:CDS 35.0%
GTGAGTAAAATCTCAATGTC+AGG - chr2.3:38522180-38522199 None:intergenic 35.0%
TCAACTACGATAACTCTAAC+AGG - chr2.3:38522225-38522244 None:intergenic 35.0%
! TTTAGTGACTTGTATTCCTC+GGG + chr2.3:38522432-38522451 MS.gene84393:CDS 35.0%
!! ATTCTAGAATCTTCTTGTCG+AGG + chr2.3:38522502-38522521 MS.gene84393:CDS 35.0%
!! GAGTTTGTTATTACAGGTGA+AGG + chr2.3:38522603-38522622 MS.gene84393:CDS 35.0%
!! TCAGGTAGTTGATTTGATTG+AGG + chr2.3:38522383-38522402 MS.gene84393:CDS 35.0%
!! TTCTAGAATCTTCTTGTCGA+GGG + chr2.3:38522503-38522522 MS.gene84393:CDS 35.0%
!!! ATTACAGGTGAAGGTGTTTT+TGG + chr2.3:38522612-38522631 MS.gene84393:CDS 35.0%
AGAATCAAGGTCTGAGGATT+GGG + chr2.3:38522406-38522425 MS.gene84393:CDS 40.0%
ATTAGATGAGAGGAAAGAGC+GGG - chr2.3:38522079-38522098 None:intergenic 40.0%
GATTAGATGAGAGGAAAGAG+CGG - chr2.3:38522080-38522099 None:intergenic 40.0%
GGTTGTGGTTGTTACAAATC+AGG + chr2.3:38522365-38522384 MS.gene84393:CDS 40.0%
TACTCACTTACTGGAAATCG+AGG + chr2.3:38522193-38522212 MS.gene84393:CDS 40.0%
TCTTTCCTCTCATCTAATCC+CGG + chr2.3:38522081-38522100 MS.gene84393:CDS 40.0%
!!! AGGTGTTTTTGGTGTAGAGA+TGG + chr2.3:38522623-38522642 MS.gene84393:CDS 40.0%
!!! AGTTCGGTCACTGATTTTGT+GGG - chr2.3:38521907-38521926 None:intergenic 40.0%
!!! GGTGTTTTTGGTGTAGAGAT+GGG + chr2.3:38522624-38522643 MS.gene84393:CDS 40.0%
!!! TGCATTTCTCGGTTTTTTGG+TGG - chr2.3:38521840-38521859 None:intergenic 40.0%
AAAACCGAGAAATGCAGCGT+AGG + chr2.3:38521844-38521863 MS.gene84393:CDS 45.0%
ACAACCTACGCTGCATTTCT+CGG - chr2.3:38521851-38521870 None:intergenic 45.0%
ACTTGTATTCCTCGGGTAGA+AGG + chr2.3:38522439-38522458 MS.gene84393:CDS 45.0%
AGAAGGGTTTCTCCTGCTTT+GGG + chr2.3:38522456-38522475 MS.gene84393:CDS 45.0%
CTTGTATTCCTCGGGTAGAA+GGG + chr2.3:38522440-38522459 MS.gene84393:CDS 45.0%
GAGAATCAAGGTCTGAGGAT+TGG + chr2.3:38522405-38522424 MS.gene84393:CDS 45.0%
GTAGAGATGGGTCAAAGGAA+TGG + chr2.3:38522636-38522655 MS.gene84393:CDS 45.0%
TAGAAGGGTTTCTCCTGCTT+TGG + chr2.3:38522455-38522474 MS.gene84393:CDS 45.0%
TAGAATCTTCTTGTCGAGGG+AGG + chr2.3:38522506-38522525 MS.gene84393:CDS 45.0%
TCTTGTCGAGGGAGGAATTT+GGG + chr2.3:38522514-38522533 MS.gene84393:CDS 45.0%
TTCTGGTGGCTTGAAAACGT+TGG + chr2.3:38522326-38522345 MS.gene84393:CDS 45.0%
TTCTTGTCGAGGGAGGAATT+TGG + chr2.3:38522513-38522532 MS.gene84393:CDS 45.0%
TTGAGGAGAATCAAGGTCTG+AGG + chr2.3:38522400-38522419 MS.gene84393:CDS 45.0%
TTGGTGTAGAGATGGGTCAA+AGG + chr2.3:38522631-38522650 MS.gene84393:CDS 45.0%
! GACGAGTTGAAGGCAGATTT+GGG - chr2.3:38521956-38521975 None:intergenic 45.0%
! TCCTGCTTTGGGTTTGTCAT+GGG + chr2.3:38522467-38522486 MS.gene84393:CDS 45.0%
!!! CGCTGCATTTCTCGGTTTTT+TGG - chr2.3:38521843-38521862 None:intergenic 45.0%
!!! GAGTTCGGTCACTGATTTTG+TGG - chr2.3:38521908-38521927 None:intergenic 45.0%
!!! GTTCGGTCACTGATTTTGTG+GGG - chr2.3:38521906-38521925 None:intergenic 45.0%
AAAACGTTGGCGGAGAGGTT+TGG + chr2.3:38522339-38522358 MS.gene84393:CDS 50.0%
AAACGTTGGCGGAGAGGTTT+GGG + chr2.3:38522340-38522359 MS.gene84393:CDS 50.0%
AAATTCCGCGGAGGAAAACG+CGG - chr2.3:38522128-38522147 None:intergenic 50.0%
AAGAGCGGGAGAGTTGTTTG+AGG - chr2.3:38522065-38522084 None:intergenic 50.0%
AGGAATTTGGGGAGGGTAGT+AGG + chr2.3:38522526-38522545 MS.gene84393:CDS 50.0%
CTCTCATCTAATCCCGGACT+GGG + chr2.3:38522087-38522106 MS.gene84393:CDS 50.0%
CTTGTCGAGGGAGGAATTTG+GGG + chr2.3:38522515-38522534 MS.gene84393:CDS 50.0%
TCTCCGCAGAGTAAATTCCG+CGG - chr2.3:38522140-38522159 None:intergenic 50.0%
TGGTGGCTTGAAAACGTTGG+CGG + chr2.3:38522329-38522348 MS.gene84393:CDS 50.0%
TGTAGAGTGATGAAGCGGAG+AGG - chr2.3:38522011-38522030 None:intergenic 50.0%
! CTCCTGCTTTGGGTTTGTCA+TGG + chr2.3:38522466-38522485 MS.gene84393:CDS 50.0%
! GGACGAGTTGAAGGCAGATT+TGG - chr2.3:38521957-38521976 None:intergenic 50.0%
! GGTTTTACCGCTTCCGCTTT+CGG - chr2.3:38521935-38521954 None:intergenic 50.0%
AGCGGGAGAGTTGTTTGAGG+CGG - chr2.3:38522062-38522081 None:intergenic 55.0%
AGGAGAAACCCTTCTACCCG+AGG - chr2.3:38522451-38522470 None:intergenic 55.0%
CCAGTCCGGGATTAGATGAG+AGG - chr2.3:38522089-38522108 None:intergenic 55.0%
CCTCCGCGGAATTTACTCTG+CGG + chr2.3:38522134-38522153 MS.gene84393:CDS 55.0%
CCTCTCATCTAATCCCGGAC+TGG + chr2.3:38522086-38522105 MS.gene84393:CDS 55.0%
CTGCCTTCAACTCGTCCTCA+TGG + chr2.3:38521960-38521979 MS.gene84393:CDS 55.0%
GCCCATGACAAACCCAAAGC+AGG - chr2.3:38522471-38522490 None:intergenic 55.0%
GCTTGAAAACGTTGGCGGAG+AGG + chr2.3:38522334-38522353 MS.gene84393:CDS 55.0%
TCGAGGGAGGAATTTGGGGA+GGG + chr2.3:38522519-38522538 MS.gene84393:CDS 55.0%
! AGTTGTTTGAGGCGGCGGAT+GGG - chr2.3:38522054-38522073 None:intergenic 55.0%
! GAGCCATGAGGACGAGTTGA+AGG - chr2.3:38521966-38521985 None:intergenic 55.0%
! TGATTTTGTGGGGATGCCGC+CGG - chr2.3:38521896-38521915 None:intergenic 55.0%
!! GCGGATGGGGAAAGGGTATT+CGG - chr2.3:38522040-38522059 None:intergenic 55.0%
!! GGAGAGGTTTGGGTTGGTTG+TGG + chr2.3:38522350-38522369 MS.gene84393:CDS 55.0%
ACCGAACTCGTCGCCGAAAG+CGG + chr2.3:38521919-38521938 MS.gene84393:CDS 60.0%
AGAGGGTCAGTTCCCAGTCC+GGG - chr2.3:38522102-38522121 None:intergenic 60.0%
AGGGTGGAAGCTGAGCCATG+AGG - chr2.3:38521978-38521997 None:intergenic 60.0%
CCGCAGAGTAAATTCCGCGG+AGG - chr2.3:38522137-38522156 None:intergenic 60.0%
GAGAGGGTCAGTTCCCAGTC+CGG - chr2.3:38522103-38522122 None:intergenic 60.0%
GCGAGGCAGCGATCAAGAAC+GGG - chr2.3:38521874-38521893 None:intergenic 60.0%
GGAGGAAAACGCGGTCGAGA+GGG - chr2.3:38522119-38522138 None:intergenic 60.0%
GGCGAGGCAGCGATCAAGAA+CGG - chr2.3:38521875-38521894 None:intergenic 60.0%
GTCGAGGGAGGAATTTGGGG+AGG + chr2.3:38522518-38522537 MS.gene84393:CDS 60.0%
GTTCTTGATCGCTGCCTCGC+CGG + chr2.3:38521874-38521893 MS.gene84393:CDS 60.0%
GTTGGCGGAGAGGTTTGGGT+TGG + chr2.3:38522344-38522363 MS.gene84393:CDS 60.0%
TCCGCTTTCGGCGACGAGTT+CGG - chr2.3:38521923-38521942 None:intergenic 60.0%
! GAGTTGTTTGAGGCGGCGGA+TGG - chr2.3:38522055-38522074 None:intergenic 60.0%
! GGGAGAGTTGTTTGAGGCGG+CGG - chr2.3:38522059-38522078 None:intergenic 60.0%
! GTTGTTTGAGGCGGCGGATG+GGG - chr2.3:38522053-38522072 None:intergenic 60.0%
CGGAGGAAAACGCGGTCGAG+AGG - chr2.3:38522120-38522139 None:intergenic 65.0%
CTCGTCGCCGAAAGCGGAAG+CGG + chr2.3:38521925-38521944 MS.gene84393:CDS 65.0%
GCTCAGCTTCCACCCTCCCA+CGG + chr2.3:38521982-38522001 MS.gene84393:CDS 65.0%
TGAGGCGGCGGATGGGGAAA+GGG - chr2.3:38522047-38522066 None:intergenic 65.0%
TTGAGGCGGCGGATGGGGAA+AGG - chr2.3:38522048-38522067 None:intergenic 65.0%
! CTCGACCGCGTTTTCCTCCG+CGG + chr2.3:38522120-38522139 MS.gene84393:CDS 65.0%
ATGAAGCGGAGAGGCCGCCG+TGG - chr2.3:38522002-38522021 None:intergenic 70.0%
CAGCTTCCACCCTCCCACGG+CGG + chr2.3:38521985-38522004 MS.gene84393:CDS 70.0%
CTTGATCGCTGCCTCGCCGG+CGG + chr2.3:38521877-38521896 MS.gene84393:CDS 70.0%
TGAAGCGGAGAGGCCGCCGT+GGG - chr2.3:38522001-38522020 None:intergenic 70.0%
TTGTGGGGATGCCGCCGGCG+AGG - chr2.3:38521891-38521910 None:intergenic 75.0%
! AGCGGAGAGGCCGCCGTGGG+AGG - chr2.3:38521998-38522017 None:intergenic 80.0%
! GAGAGGCCGCCGTGGGAGGG+TGG - chr2.3:38521994-38522013 None:intergenic 80.0%
! GCGGAGAGGCCGCCGTGGGA+GGG - chr2.3:38521997-38522016 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 38521802 38522665 38521802 ID=MS.gene84393
chr2.3 mRNA 38521802 38522665 38521802 ID=MS.gene84393.t1;Parent=MS.gene84393
chr2.3 exon 38521802 38522665 38521802 ID=MS.gene84393.t1.exon1;Parent=MS.gene84393.t1
chr2.3 CDS 38521802 38522665 38521802 ID=cds.MS.gene84393.t1;Parent=MS.gene84393.t1
Gene Sequence

>MS.gene84393

ATGAGCACAGCGGCGCAGAATCTAGTGCATGAGCTCCACCAAAAAACCGAGAAATGCAGCGTAGGTTGTCCCGTTCTTGATCGCTGCCTCGCCGGCGGCATCCCCACAAAATCAGTGACCGAACTCGTCGCCGAAAGCGGAAGCGGTAAAACCCAAATCTGCCTTCAACTCGTCCTCATGGCTCAGCTTCCACCCTCCCACGGCGGCCTCTCCGCTTCATCACTCTACATATTCACCGAATACCCTTTCCCCATCCGCCGCCTCAAACAACTCTCCCGCTCTTTCCTCTCATCTAATCCCGGACTGGGAACTGACCCTCTCGACCGCGTTTTCCTCCGCGGAATTTACTCTGCGGAGAAATTCGTTGAATTTTTACCTGACATTGAGATTTTACTCACTTACTGGAAATCGAGGTTGCGTCCTGTTAGAGTTATCGTAGTTGATTCTATTGCTGCTTTGTTTAGATCTGAATTTGAAAACTCTATGTTGGATCTTAAACGTAGATCGTCCTTGTTTTTCAAGATTTCTGGTGGCTTGAAAACGTTGGCGGAGAGGTTTGGGTTGGTTGTGGTTGTTACAAATCAGGTAGTTGATTTGATTGAGGAGAATCAAGGTCTGAGGATTGGGAATTTTAGTGACTTGTATTCCTCGGGTAGAAGGGTTTCTCCTGCTTTGGGTTTGTCATGGGCCAATTGTGTGAATTCTAGAATCTTCTTGTCGAGGGAGGAATTTGGGGAGGGTAGTAGGAAATTGAGAACATTTAGGGTTGTTTTTGCTCCTCATTTACCTCAATGTTGTTCTGAGTTTGTTATTACAGGTGAAGGTGTTTTTGGTGTAGAGATGGGTCAAAGGAATGGTGTATGA
Protein sequence

>MS.gene84393.t1

MSTAAQNLVHELHQKTEKCSVGCPVLDRCLAGGIPTKSVTELVAESGSGKTQICLQLVLMAQLPPSHGGLSASSLYIFTEYPFPIRRLKQLSRSFLSSNPGLGTDPLDRVFLRGIYSAEKFVEFLPDIEILLTYWKSRLRPVRVIVVDSIAALFRSEFENSMLDLKRRSSLFFKISGGLKTLAERFGLVVVVTNQVVDLIEENQGLRIGNFSDLYSSGRRVSPALGLSWANCVNSRIFLSREEFGEGSRKLRTFRVVFAPHLPQCCSEFVITGEGVFGVEMGQRNGV