Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84735.t1 | AFK35236.1 | 99.5 | 186 | 1 | 0 | 1 | 186 | 1 | 186 | 9.80E-102 | 379.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84735.t1 | P92964 | 76.1 | 180 | 40 | 2 | 1 | 177 | 1 | 180 | 1.6e-73 | 277.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84735.t1 | G7LAU9 | 99.5 | 186 | 1 | 0 | 1 | 186 | 1 | 186 | 7.0e-102 | 379.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene053099 | MS.gene84735 | PPI |
| MS.gene84735 | MS.gene047872 | PPI |
| MS.gene82776 | MS.gene84735 | PPI |
| MS.gene032681 | MS.gene84735 | PPI |
| MS.gene84735 | MS.gene011973 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84735.t1 | MTR_8g027190 | 98.795 | 249 | 3 | 0 | 1 | 249 | 1 | 249 | 2.80e-179 | 492 |
| MS.gene84735.t1 | MTR_8g027190 | 97.696 | 217 | 5 | 0 | 33 | 249 | 19 | 235 | 8.14e-153 | 425 |
| MS.gene84735.t1 | MTR_8g027190 | 95.045 | 222 | 11 | 0 | 28 | 249 | 8 | 229 | 3.25e-152 | 423 |
| MS.gene84735.t1 | MTR_8g032590 | 54.373 | 263 | 88 | 4 | 1 | 243 | 1 | 251 | 1.18e-85 | 257 |
| MS.gene84735.t1 | MTR_1g101520 | 56.604 | 265 | 88 | 7 | 1 | 248 | 1 | 255 | 3.23e-80 | 246 |
| MS.gene84735.t1 | MTR_8g032590 | 52.402 | 229 | 77 | 4 | 35 | 243 | 24 | 240 | 5.13e-65 | 204 |
| MS.gene84735.t1 | MTR_8g032590 | 52.036 | 221 | 74 | 4 | 43 | 243 | 2 | 210 | 5.39e-60 | 190 |
| MS.gene84735.t1 | MTR_1g101520 | 55.157 | 223 | 73 | 7 | 43 | 248 | 2 | 214 | 2.29e-55 | 181 |
| MS.gene84735.t1 | MTR_8g058530 | 31.953 | 169 | 93 | 5 | 2 | 150 | 7 | 173 | 3.32e-14 | 71.2 |
| MS.gene84735.t1 | MTR_7g108810 | 32.716 | 162 | 87 | 5 | 2 | 143 | 108 | 267 | 1.24e-13 | 70.1 |
| MS.gene84735.t1 | MTR_1g083400 | 32.298 | 161 | 87 | 5 | 2 | 142 | 38 | 196 | 2.73e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84735.t1 | AT3G61860 | 71.591 | 264 | 58 | 5 | 1 | 248 | 1 | 263 | 1.07e-120 | 345 |
| MS.gene84735.t1 | AT2G46610 | 67.451 | 255 | 70 | 5 | 1 | 248 | 1 | 249 | 4.72e-110 | 317 |
| MS.gene84735.t1 | AT2G46610 | 65.333 | 225 | 65 | 5 | 31 | 248 | 5 | 223 | 3.89e-90 | 266 |
| MS.gene84735.t1 | AT2G46610 | 66.516 | 221 | 61 | 5 | 35 | 248 | 15 | 229 | 7.70e-90 | 265 |
| MS.gene84735.t1 | AT2G46610 | 66.516 | 221 | 61 | 5 | 35 | 248 | 15 | 229 | 7.70e-90 | 265 |
| MS.gene84735.t1 | AT4G25500 | 54.340 | 265 | 100 | 7 | 1 | 249 | 1 | 260 | 2.52e-79 | 243 |
| MS.gene84735.t1 | AT4G25500 | 54.340 | 265 | 100 | 7 | 1 | 249 | 1 | 260 | 2.52e-79 | 243 |
| MS.gene84735.t1 | AT5G52040 | 51.773 | 282 | 90 | 8 | 1 | 243 | 1 | 275 | 1.45e-74 | 231 |
| MS.gene84735.t1 | AT5G52040 | 51.773 | 282 | 90 | 8 | 1 | 243 | 1 | 275 | 1.57e-74 | 231 |
| MS.gene84735.t1 | AT4G25500 | 52.174 | 230 | 89 | 7 | 36 | 249 | 3 | 227 | 1.41e-58 | 188 |
| MS.gene84735.t1 | AT4G25500 | 52.174 | 230 | 89 | 7 | 36 | 249 | 3 | 227 | 1.41e-58 | 188 |
| MS.gene84735.t1 | AT4G25500 | 52.174 | 230 | 89 | 7 | 36 | 249 | 15 | 239 | 3.27e-58 | 188 |
| MS.gene84735.t1 | AT4G25500 | 52.174 | 230 | 89 | 7 | 36 | 249 | 15 | 239 | 3.27e-58 | 188 |
| MS.gene84735.t1 | AT4G25500 | 52.174 | 230 | 89 | 7 | 36 | 249 | 15 | 239 | 3.27e-58 | 188 |
| MS.gene84735.t1 | AT4G25500 | 52.174 | 230 | 89 | 7 | 36 | 249 | 15 | 239 | 3.27e-58 | 188 |
| MS.gene84735.t1 | AT5G52040 | 48.988 | 247 | 80 | 8 | 36 | 243 | 3 | 242 | 3.02e-53 | 175 |
| MS.gene84735.t1 | AT5G52040 | 48.988 | 247 | 80 | 8 | 36 | 243 | 3 | 242 | 3.20e-53 | 175 |
| MS.gene84735.t1 | AT5G52040 | 48.780 | 246 | 80 | 8 | 37 | 243 | 10 | 248 | 6.76e-52 | 172 |
| MS.gene84735.t1 | AT5G52040 | 47.917 | 240 | 79 | 8 | 43 | 243 | 2 | 234 | 4.44e-48 | 161 |
| MS.gene84735.t1 | AT5G52040 | 47.917 | 240 | 79 | 8 | 43 | 243 | 2 | 234 | 4.44e-48 | 161 |
| MS.gene84735.t1 | AT1G02840 | 46.250 | 80 | 36 | 2 | 2 | 76 | 7 | 84 | 1.48e-12 | 66.6 |
| MS.gene84735.t1 | AT1G02840 | 46.250 | 80 | 36 | 2 | 2 | 76 | 7 | 84 | 1.83e-12 | 65.9 |
| MS.gene84735.t1 | AT1G02840 | 46.250 | 80 | 36 | 2 | 2 | 76 | 7 | 84 | 1.83e-12 | 65.9 |
| MS.gene84735.t1 | AT1G02840 | 46.250 | 80 | 36 | 2 | 2 | 76 | 7 | 84 | 1.83e-12 | 65.9 |
| MS.gene84735.t1 | AT1G02840 | 46.250 | 80 | 36 | 2 | 2 | 76 | 7 | 84 | 1.85e-12 | 65.9 |
| MS.gene84735.t1 | AT4G02430 | 43.750 | 80 | 38 | 2 | 2 | 76 | 7 | 84 | 9.34e-12 | 62.4 |
| MS.gene84735.t1 | AT2G43410 | 28.191 | 188 | 111 | 9 | 4 | 185 | 20 | 189 | 1.18e-11 | 64.7 |
| MS.gene84735.t1 | AT2G43410 | 28.191 | 188 | 111 | 9 | 4 | 185 | 20 | 189 | 1.18e-11 | 64.7 |
| MS.gene84735.t1 | AT2G43410 | 28.191 | 188 | 111 | 9 | 4 | 185 | 20 | 189 | 1.18e-11 | 64.7 |
| MS.gene84735.t1 | AT2G43410 | 28.191 | 188 | 111 | 9 | 4 | 185 | 20 | 189 | 1.58e-11 | 64.3 |
| MS.gene84735.t1 | AT2G43410 | 28.191 | 188 | 111 | 9 | 4 | 185 | 20 | 189 | 1.58e-11 | 64.3 |
| MS.gene84735.t1 | AT3G53500 | 41.237 | 97 | 54 | 2 | 4 | 99 | 13 | 107 | 1.62e-11 | 63.2 |
| MS.gene84735.t1 | AT2G37340 | 47.887 | 71 | 35 | 1 | 4 | 74 | 13 | 81 | 2.19e-11 | 62.8 |
| MS.gene84735.t1 | AT4G02430 | 43.750 | 80 | 38 | 2 | 2 | 76 | 7 | 84 | 5.01e-11 | 61.6 |
| MS.gene84735.t1 | AT4G02430 | 43.750 | 80 | 38 | 2 | 2 | 76 | 7 | 84 | 5.09e-11 | 62.0 |
Find 73 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAGACACTTTAAACCTTA+TGG | 0.222757 | 8.4:-69692596 | MS.gene84735:CDS |
| ATAGAGTCTTTGTGGGCTTC+TGG | 0.278090 | 8.4:+69692663 | None:intergenic |
| CCTCATATTTGTACACTCTA+AGG | 0.314870 | 8.4:+69692499 | None:intergenic |
| GTCTTTGTGGGCTTCTGGTT+TGG | 0.315775 | 8.4:+69692668 | None:intergenic |
| CTGCGGTATCTGCCATATTC+AGG | 0.327516 | 8.4:+69692120 | None:intergenic |
| TCACTAACTCTAGTGCGAAT+TGG | 0.336741 | 8.4:+69692623 | None:intergenic |
| GGCTATCTGTGGAGTGGGCT+AGG | 0.362539 | 8.4:-69692840 | MS.gene84735:CDS |
| AGTGACAGGGTCGACAATTA+TGG | 0.370425 | 8.4:-69692324 | MS.gene84735:CDS |
| CACTAACTCTAGTGCGAATT+GGG | 0.380353 | 8.4:+69692624 | None:intergenic |
| AGGAACAGGAGTCCTGATTA+TGG | 0.389774 | 8.4:-69692156 | MS.gene84735:CDS |
| TCCAAATTTCCAGCGAAAAC+CGG | 0.392892 | 8.4:+69694280 | None:intergenic |
| TTGCTCTTGCAGTAAGATAC+TGG | 0.395107 | 8.4:-69692385 | MS.gene84735:intron |
| AGGCGGAGGAGTCCTGATTA+TGG | 0.398474 | 8.4:-69692180 | MS.gene84735:CDS |
| AGAGACACTTTAAACCTTAT+GGG | 0.400181 | 8.4:-69692595 | MS.gene84735:CDS |
| GCGCTTGACAATATTCCATT+TGG | 0.401690 | 8.4:-69692877 | MS.gene84735:CDS |
| CTACGAGAACGGCCATAGTC+TGG | 0.401940 | 8.4:+69692234 | None:intergenic |
| CTCCTGTTCCTGCCATAATC+AGG | 0.406180 | 8.4:+69692144 | None:intergenic |
| CTCCTGTTCCTGCCATAATC+AGG | 0.406180 | 8.4:+69692168 | None:intergenic |
| AGGAACAGGAGTCCTGAATA+TGG | 0.409716 | 8.4:-69692132 | MS.gene84735:CDS |
| CTTGGTCGCCTGCGATAACC+TGG | 0.421728 | 8.4:+69692258 | None:intergenic |
| AATCACAAATAGAGTCTTTG+TGG | 0.433878 | 8.4:+69692655 | None:intergenic |
| TCAGGACTCCTCCGCCTGTC+CGG | 0.438117 | 8.4:+69692186 | None:intergenic |
| GAACGCGTTGACATGAAATC+TGG | 0.450398 | 8.4:-69694202 | MS.gene84735:intron |
| GTCCTGATTATGGCAGGAAC+AGG | 0.465754 | 8.4:-69692146 | MS.gene84735:CDS |
| GTCCTGATTATGGCAGGAAC+AGG | 0.465754 | 8.4:-69692170 | MS.gene84735:CDS |
| CTCTGAGGGATGATAGTGAC+AGG | 0.470525 | 8.4:-69692338 | MS.gene84735:CDS |
| TCGCCTGCGATAACCTGGAC+TGG | 0.471164 | 8.4:+69692263 | None:intergenic |
| ACATGATGAAGCGGCCCATA+AGG | 0.474793 | 8.4:+69692581 | None:intergenic |
| CGCCTGCGATAACCTGGACT+GGG | 0.476215 | 8.4:+69692264 | None:intergenic |
| ATCACAAATAGAGTCTTTGT+GGG | 0.479035 | 8.4:+69692656 | None:intergenic |
| AGGCGACCAAGTCCAGACTA+TGG | 0.483060 | 8.4:-69692246 | MS.gene84735:CDS |
| GTCTGTGGAGTATGCTCTGA+GGG | 0.501476 | 8.4:-69692352 | MS.gene84735:CDS |
| GGCAGTCCCAGAAGAGGAGG+GGG | 0.518717 | 8.4:-69692300 | MS.gene84735:CDS |
| CTCGTAGTCCTGTGTATGAT+AGG | 0.525796 | 8.4:-69692218 | MS.gene84735:CDS |
| CTTGCTAGATCTCCCAGTCC+AGG | 0.540800 | 8.4:-69692276 | MS.gene84735:CDS |
| CTTGCAGTAAGATACTGGAT+AGG | 0.543043 | 8.4:-69692380 | MS.gene84735:intron |
| CCTTAGAGTGTACAAATATG+AGG | 0.549055 | 8.4:-69692499 | MS.gene84735:intron |
| GAACGTGGGCGTCACCGTGA+TGG | 0.553136 | 8.4:-69692698 | MS.gene84735:CDS |
| CGTCGCTTGTCATAACCAAA+TGG | 0.554953 | 8.4:+69692862 | None:intergenic |
| GCTATCTGTGGAGTGGGCTA+GGG | 0.556063 | 8.4:-69692839 | MS.gene84735:intron |
| CTCCCAGTCCAGGTTATCGC+AGG | 0.556272 | 8.4:-69692266 | MS.gene84735:CDS |
| CCTGTGTATGATAGGTATAG+TGG | 0.556286 | 8.4:-69692210 | MS.gene84735:CDS |
| CTGAATATGGCAGATACCGC+AGG | 0.560299 | 8.4:-69692119 | MS.gene84735:intron |
| ACAGGAGTCCTGATTATGGC+AGG | 0.566824 | 8.4:-69692152 | MS.gene84735:CDS |
| TTGCAGTAAGATACTGGATA+GGG | 0.567226 | 8.4:-69692379 | MS.gene84735:intron |
| GGAGGAGTCCTGATTATGGC+AGG | 0.568022 | 8.4:-69692176 | MS.gene84735:CDS |
| GGTGGCAGTCCCAGAAGAGG+AGG | 0.570458 | 8.4:-69692303 | MS.gene84735:CDS |
| GGTTTGGCTTTGAGCCATCA+CGG | 0.574706 | 8.4:+69692684 | None:intergenic |
| ACTGGATAGGGTGGTGTCTG+TGG | 0.574929 | 8.4:-69692367 | MS.gene84735:CDS |
| TAAGTTCTTGACCTTCGCAC+TGG | 0.577328 | 8.4:+69692007 | None:intergenic |
| TTCATCATGTTCGAATTCGT+CGG | 0.579765 | 8.4:-69692568 | MS.gene84735:CDS |
| TGAAGGAGGAAAGATGAGGC+CGG | 0.580481 | 8.4:-69694299 | None:intergenic |
| GTGGCAGTCCCAGAAGAGGA+GGG | 0.580855 | 8.4:-69692302 | MS.gene84735:CDS |
| CGAATTCGAACATGATGAAG+CGG | 0.587916 | 8.4:+69692572 | None:intergenic |
| GAACGGCCATAGTCTGGACT+TGG | 0.590667 | 8.4:+69692240 | None:intergenic |
| GCGACGGCTATCTGTGGAGT+GGG | 0.593866 | 8.4:-69692845 | MS.gene84735:CDS |
| ATAGGTATAGTGGACCGGAC+AGG | 0.595852 | 8.4:-69692200 | MS.gene84735:CDS |
| GTATGATAGGTATAGTGGAC+CGG | 0.598217 | 8.4:-69692205 | MS.gene84735:CDS |
| ATAGTGGACCGGACAGGCGG+AGG | 0.599511 | 8.4:-69692194 | MS.gene84735:CDS |
| TGGCAGTCCCAGAAGAGGAG+GGG | 0.613456 | 8.4:-69692301 | MS.gene84735:CDS |
| TGACAAGCGACGGCTATCTG+TGG | 0.625155 | 8.4:-69692851 | MS.gene84735:CDS |
| CAGTAAGATACTGGATAGGG+TGG | 0.630521 | 8.4:-69692376 | MS.gene84735:CDS |
| AGCGACGGCTATCTGTGGAG+TGG | 0.634117 | 8.4:-69692846 | MS.gene84735:CDS |
| CATACACAGGACTACGAGAA+CGG | 0.635744 | 8.4:+69692223 | None:intergenic |
| ATTTGTGCAGTATGAAACAC+AGG | 0.636540 | 8.4:-69692537 | MS.gene84735:CDS |
| ACAGTCGTTCACCAGTGCGA+AGG | 0.644913 | 8.4:-69692018 | MS.gene84735:intron |
| TATGGTGGCAGTCCCAGAAG+AGG | 0.645974 | 8.4:-69692306 | MS.gene84735:CDS |
| CATTTGGTTATGACAAGCGA+CGG | 0.649124 | 8.4:-69692861 | MS.gene84735:CDS |
| CCACTATACCTATCATACAC+AGG | 0.654929 | 8.4:+69692210 | None:intergenic |
| GGTATAGTGGACCGGACAGG+CGG | 0.664021 | 8.4:-69692197 | MS.gene84735:CDS |
| TGTCTGTGGAGTATGCTCTG+AGG | 0.665943 | 8.4:-69692353 | MS.gene84735:CDS |
| GACAGGGTCGACAATTATGG+TGG | 0.677035 | 8.4:-69692321 | MS.gene84735:CDS |
| TCTGAGGGATGATAGTGACA+GGG | 0.724869 | 8.4:-69692337 | MS.gene84735:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAATAAATCATAAAACT+TGG | + | chr8.4:69692281-69692300 | None:intergenic | 15.0% |
| !!! | AATAATGAATTTTTTAGTGT+TGG | - | chr8.4:69692345-69692364 | MS.gene84735:CDS | 15.0% |
| !! | AGAAAAACTTAAAAAACCAA+AGG | + | chr8.4:69692771-69692790 | None:intergenic | 20.0% |
| !! | AGAATAAATAAGTCGAAAAA+AGG | + | chr8.4:69694243-69694262 | None:intergenic | 20.0% |
| !!! | TAAGTGATTTGTTTTCATTT+TGG | - | chr8.4:69693565-69693584 | MS.gene84735:intron | 20.0% |
| ! | AAGAGATTTCAGAAATAGAA+GGG | + | chr8.4:69693073-69693092 | None:intergenic | 25.0% |
| ! | AAGGTTTAAATCCAAAATTC+AGG | + | chr8.4:69693141-69693160 | None:intergenic | 25.0% |
| ! | CAACATGTACAATTAATAAC+TGG | - | chr8.4:69693874-69693893 | MS.gene84735:intron | 25.0% |
| ! | CTTAAGTTCATATTATTCTC+AGG | + | chr8.4:69693549-69693568 | None:intergenic | 25.0% |
| !!! | AAACCAAAGGATTTTTTCAA+AGG | + | chr8.4:69692758-69692777 | None:intergenic | 25.0% |
| !!! | CAAATCATGATTGCTTTTAA+AGG | + | chr8.4:69693160-69693179 | None:intergenic | 25.0% |
| AATCACAAATAGAGTCTTTG+TGG | + | chr8.4:69693640-69693659 | None:intergenic | 30.0% | |
| AGAGACACTTTAAACCTTAT+GGG | - | chr8.4:69693697-69693716 | MS.gene84735:intron | 30.0% | |
| AGTTGTAGTTTATGGTATGA+GGG | - | chr8.4:69692419-69692438 | MS.gene84735:intron | 30.0% | |
| ATCACAAATAGAGTCTTTGT+GGG | + | chr8.4:69693639-69693658 | None:intergenic | 30.0% | |
| CAAAAAAAATTTGCAGAGGT+TGG | + | chr8.4:69692849-69692868 | None:intergenic | 30.0% | |
| CAAGAGATTTCAGAAATAGA+AGG | + | chr8.4:69693074-69693093 | None:intergenic | 30.0% | |
| CTTCCAAAAAAAATTTGCAG+AGG | + | chr8.4:69692853-69692872 | None:intergenic | 30.0% | |
| ! | ATGCCTTTGAAAAAATCCTT+TGG | - | chr8.4:69692752-69692771 | MS.gene84735:intron | 30.0% |
| ! | GAAAATCGAGTTGTAGTTTA+TGG | - | chr8.4:69692411-69692430 | MS.gene84735:intron | 30.0% |
| ! | TTAAGTTTTTCTTTTGACGC+AGG | - | chr8.4:69692779-69692798 | MS.gene84735:intron | 30.0% |
| !! | ATTCTAGCTTAACCCTTAAT+TGG | - | chr8.4:69692213-69692232 | MS.gene84735:CDS | 30.0% |
| !! | GATTTGTTTTCATTTTGGCA+GGG | - | chr8.4:69693570-69693589 | MS.gene84735:intron | 30.0% |
| !! | TTCTAGCTTAACCCTTAATT+GGG | - | chr8.4:69692214-69692233 | MS.gene84735:CDS | 30.0% |
| !!! | CAACCTCTGCAAATTTTTTT+TGG | - | chr8.4:69692847-69692866 | MS.gene84735:CDS | 30.0% |
| !!! | TCTAATTTCAGTTTTGTTGC+AGG | - | chr8.4:69693340-69693359 | MS.gene84735:intron | 30.0% |
| !!! | TGATTTGTTTTCATTTTGGC+AGG | - | chr8.4:69693569-69693588 | MS.gene84735:intron | 30.0% |
| ACAACACCTGAATATAAGTG+TGG | + | chr8.4:69693223-69693242 | None:intergenic | 35.0% | |
| AGTTCATATTATTCTCAGGC+AGG | + | chr8.4:69693545-69693564 | None:intergenic | 35.0% | |
| ATAACATAGTGCCCCAATTA+AGG | + | chr8.4:69692229-69692248 | None:intergenic | 35.0% | |
| ATCAGTCCACACTTATATTC+AGG | - | chr8.4:69693214-69693233 | MS.gene84735:intron | 35.0% | |
| ATTTGTGCAGTATGAAACAC+AGG | - | chr8.4:69693755-69693774 | MS.gene84735:intron | 35.0% | |
| CAATCAGAACTGATCTTAGA+GGG | - | chr8.4:69692971-69692990 | MS.gene84735:intron | 35.0% | |
| CCTCATATTTGTACACTCTA+AGG | + | chr8.4:69693796-69693815 | None:intergenic | 35.0% | |
| CCTTAGAGTGTACAAATATG+AGG | - | chr8.4:69693793-69693812 | MS.gene84735:intron | 35.0% | |
| CTAGCAGTGTTGTCAAATAT+CGG | - | chr8.4:69692546-69692565 | MS.gene84735:CDS | 35.0% | |
| CTAGCTTCACTGAAAACATA+GGG | - | chr8.4:69693021-69693040 | MS.gene84735:intron | 35.0% | |
| GACTTCAAATACAATACCTG+CGG | + | chr8.4:69694192-69694211 | None:intergenic | 35.0% | |
| GAGAGACACTTTAAACCTTA+TGG | - | chr8.4:69693696-69693715 | MS.gene84735:intron | 35.0% | |
| GAGTATGTGAATTGAGAAAG+AGG | + | chr8.4:69692124-69692143 | None:intergenic | 35.0% | |
| GAGTTGTAGTTTATGGTATG+AGG | - | chr8.4:69692418-69692437 | MS.gene84735:intron | 35.0% | |
| GATGTAGGCTATTGTAAACT+AGG | - | chr8.4:69692443-69692462 | MS.gene84735:intron | 35.0% | |
| GTATTCCTTTGTTCCTAACA+GGG | - | chr8.4:69693241-69693260 | MS.gene84735:intron | 35.0% | |
| TAACAGGGAAAATGATTTCC+TGG | - | chr8.4:69693256-69693275 | MS.gene84735:intron | 35.0% | |
| TAACATAGTGCCCCAATTAA+GGG | + | chr8.4:69692228-69692247 | None:intergenic | 35.0% | |
| TAGCTTCACTGAAAACATAG+GGG | - | chr8.4:69693022-69693041 | MS.gene84735:intron | 35.0% | |
| TCAATCAGAACTGATCTTAG+AGG | - | chr8.4:69692970-69692989 | MS.gene84735:intron | 35.0% | |
| TGTATTCCTTTGTTCCTAAC+AGG | - | chr8.4:69693240-69693259 | MS.gene84735:intron | 35.0% | |
| TTCATCATGTTCGAATTCGT+CGG | - | chr8.4:69693724-69693743 | MS.gene84735:intron | 35.0% | |
| TTGCAGTAAGATACTGGATA+GGG | - | chr8.4:69693913-69693932 | MS.gene84735:intron | 35.0% | |
| ! | ACAATCTCAGACCTGAATTT+TGG | - | chr8.4:69693127-69693146 | MS.gene84735:intron | 35.0% |
| ! | AGGAAATCATTTTCCCTGTT+AGG | + | chr8.4:69693257-69693276 | None:intergenic | 35.0% |
| ! | ATTTTCCCTGTTAGGAACAA+AGG | + | chr8.4:69693249-69693268 | None:intergenic | 35.0% |
| ! | TCTAGCTTAACCCTTAATTG+GGG | - | chr8.4:69692215-69692234 | MS.gene84735:CDS | 35.0% |
| !! | GAACGCTTGTTTTCAAAGTA+TGG | - | chr8.4:69692060-69692079 | MS.gene84735:intron | 35.0% |
| AAACATGATCGCTAAAGCAC+TGG | + | chr8.4:69693483-69693502 | None:intergenic | 40.0% | |
| AATATGCTGAGCATCTGTCT+TGG | - | chr8.4:69692819-69692838 | MS.gene84735:intron | 40.0% | |
| AATCTCTTGTGCTGTCTGAA+TGG | - | chr8.4:69693085-69693104 | MS.gene84735:intron | 40.0% | |
| ACCCACAATGACACAAATTG+GGG | + | chr8.4:69692313-69692332 | None:intergenic | 40.0% | |
| AGAAAATGCAGATCTGTGGA+TGG | + | chr8.4:69692895-69692914 | None:intergenic | 40.0% | |
| AGACCCACAATGACACAAAT+TGG | + | chr8.4:69692315-69692334 | None:intergenic | 40.0% | |
| ATCCAAATTCCAGAACATGG+TGG | + | chr8.4:69692486-69692505 | None:intergenic | 40.0% | |
| CACTAACTCTAGTGCGAATT+GGG | + | chr8.4:69693671-69693690 | None:intergenic | 40.0% | |
| CATTTGGTTATGACAAGCGA+CGG | - | chr8.4:69693431-69693450 | MS.gene84735:intron | 40.0% | |
| CCACTATACCTATCATACAC+AGG | + | chr8.4:69694085-69694104 | None:intergenic | 40.0% | |
| CCTAGCTTCACTGAAAACAT+AGG | - | chr8.4:69693020-69693039 | MS.gene84735:intron | 40.0% | |
| CCTATCCAAATTCCAGAACA+TGG | + | chr8.4:69692489-69692508 | None:intergenic | 40.0% | |
| CCTGTGTATGATAGGTATAG+TGG | - | chr8.4:69694082-69694101 | MS.gene84735:intron | 40.0% | |
| CGAATTCGAACATGATGAAG+CGG | + | chr8.4:69693723-69693742 | None:intergenic | 40.0% | |
| CTAGACATCAGTGTTGTCAA+TGG | + | chr8.4:69692687-69692706 | None:intergenic | 40.0% | |
| CTATTGTAAACTAGGCCCTA+GGG | - | chr8.4:69692451-69692470 | MS.gene84735:intron | 40.0% | |
| CTTGCAGTAAGATACTGGAT+AGG | - | chr8.4:69693912-69693931 | MS.gene84735:intron | 40.0% | |
| GACCCACAATGACACAAATT+GGG | + | chr8.4:69692314-69692333 | None:intergenic | 40.0% | |
| GATGAGAAAATGCAGATCTG+TGG | + | chr8.4:69692899-69692918 | None:intergenic | 40.0% | |
| GCGCTTGACAATATTCCATT+TGG | - | chr8.4:69693415-69693434 | MS.gene84735:intron | 40.0% | |
| GGGAAAATGATTTCCTGGTT+TGG | - | chr8.4:69693261-69693280 | MS.gene84735:intron | 40.0% | |
| TCACTAACTCTAGTGCGAAT+TGG | + | chr8.4:69693672-69693691 | None:intergenic | 40.0% | |
| TCCAAATTTCCAGCGAAAAC+CGG | + | chr8.4:69692015-69692034 | None:intergenic | 40.0% | |
| TCTGAATGGAGAATCATGCT+TGG | - | chr8.4:69693099-69693118 | MS.gene84735:intron | 40.0% | |
| TGGAATTTGGATAGGAGTGA+TGG | - | chr8.4:69692494-69692513 | MS.gene84735:intron | 40.0% | |
| TGTCATTGTGGGTCTAAGAA+CGG | - | chr8.4:69692320-69692339 | MS.gene84735:CDS | 40.0% | |
| TGTCCCGATGGAAAAAGAAA+CGG | - | chr8.4:69692713-69692732 | MS.gene84735:intron | 40.0% | |
| TTATGGTATGAGGGTGATGT+AGG | - | chr8.4:69692428-69692447 | MS.gene84735:intron | 40.0% | |
| TTGCTCTTGCAGTAAGATAC+TGG | - | chr8.4:69693907-69693926 | MS.gene84735:intron | 40.0% | |
| TTGTCAAATATCGGCCATGA+CGG | - | chr8.4:69692555-69692574 | MS.gene84735:CDS | 40.0% | |
| ! | ACCCCAATTTGTGTCATTGT+GGG | - | chr8.4:69692309-69692328 | MS.gene84735:CDS | 40.0% |
| ! | CCTATGTTTTCAGTGAAGCT+AGG | + | chr8.4:69693023-69693042 | None:intergenic | 40.0% |
| ! | GTGCTTTAGCGATCATGTTT+TGG | - | chr8.4:69693483-69693502 | MS.gene84735:intron | 40.0% |
| ! | TACCCCAATTTGTGTCATTG+TGG | - | chr8.4:69692308-69692327 | MS.gene84735:CDS | 40.0% |
| ! | TTCTTTTTCCATCGGGACAT+AGG | + | chr8.4:69692712-69692731 | None:intergenic | 40.0% |
| !! | ATCCACCATGTTCTGGAATT+TGG | - | chr8.4:69692481-69692500 | MS.gene84735:intron | 40.0% |
| !! | CCATGTTCTGGAATTTGGAT+AGG | - | chr8.4:69692486-69692505 | MS.gene84735:intron | 40.0% |
| !! | GTATGATAGGTATAGTGGAC+CGG | - | chr8.4:69694087-69694106 | MS.gene84735:intron | 40.0% |
| !! | TCTGCCGTTTCTTTTTCCAT+CGG | + | chr8.4:69692720-69692739 | None:intergenic | 40.0% |
| AAAGCCCCCATACTCAGATA+TGG | - | chr8.4:69692618-69692637 | MS.gene84735:CDS | 45.0% | |
| AATGCAGATCTGTGGATGGA+AGG | + | chr8.4:69692891-69692910 | None:intergenic | 45.0% | |
| ACCACCATATCTGAGTATGG+GGG | + | chr8.4:69692625-69692644 | None:intergenic | 45.0% | |
| AGGAACAGGAGTCCTGAATA+TGG | - | chr8.4:69694160-69694179 | MS.gene84735:intron | 45.0% | |
| AGGAACAGGAGTCCTGATTA+TGG | - | chr8.4:69694136-69694155 | MS.gene84735:intron | 45.0% | |
| AGTGACAGGGTCGACAATTA+TGG | - | chr8.4:69693968-69693987 | MS.gene84735:intron | 45.0% | |
| ATAGAGTCTTTGTGGGCTTC+TGG | + | chr8.4:69693632-69693651 | None:intergenic | 45.0% | |
| ATGCAGATCTGTGGATGGAA+GGG | + | chr8.4:69692890-69692909 | None:intergenic | 45.0% | |
| CACCACCATATCTGAGTATG+GGG | + | chr8.4:69692626-69692645 | None:intergenic | 45.0% | |
| CAGTAAGATACTGGATAGGG+TGG | - | chr8.4:69693916-69693935 | MS.gene84735:intron | 45.0% | |
| CATACACAGGACTACGAGAA+CGG | + | chr8.4:69694072-69694091 | None:intergenic | 45.0% | |
| CGTCGCTTGTCATAACCAAA+TGG | + | chr8.4:69693433-69693452 | None:intergenic | 45.0% | |
| CTCGTAGTCCTGTGTATGAT+AGG | - | chr8.4:69694074-69694093 | MS.gene84735:intron | 45.0% | |
| GACGCAGGAACTTCTACTAA+AGG | - | chr8.4:69692794-69692813 | MS.gene84735:intron | 45.0% | |
| GAGCCAACAATCTGATATGC+TGG | + | chr8.4:69692660-69692679 | None:intergenic | 45.0% | |
| GCACCACCATATCTGAGTAT+GGG | + | chr8.4:69692627-69692646 | None:intergenic | 45.0% | |
| GCTATTGTAAACTAGGCCCT+AGG | - | chr8.4:69692450-69692469 | MS.gene84735:intron | 45.0% | |
| TAAGTTCTTGACCTTCGCAC+TGG | + | chr8.4:69694288-69694307 | None:intergenic | 45.0% | |
| TGGCCAGCATATCAGATTGT+TGG | - | chr8.4:69692654-69692673 | MS.gene84735:CDS | 45.0% | |
| TGTGAAGTTCGTGTGTCAGT+TGG | - | chr8.4:69692386-69692405 | MS.gene84735:intron | 45.0% | |
| ! | GAACGCGTTGACATGAAATC+TGG | - | chr8.4:69692090-69692109 | MS.gene84735:intron | 45.0% |
| ! | GTTTTCAGTGAAGCTAGGCA+TGG | + | chr8.4:69693018-69693037 | None:intergenic | 45.0% |
| ! | TCTGAGGGATGATAGTGACA+GGG | - | chr8.4:69693955-69693974 | MS.gene84735:intron | 45.0% |
| ! | TTGGCTGATGTACTTGGTGA+GGG | - | chr8.4:69693280-69693299 | MS.gene84735:intron | 45.0% |
| ! | TTTGGCTGATGTACTTGGTG+AGG | - | chr8.4:69693279-69693298 | MS.gene84735:intron | 45.0% |
| !! | ATATCGGCCATGACGGATAT+TGG | - | chr8.4:69692562-69692581 | MS.gene84735:CDS | 45.0% |
| !! | CATGACGGATATTGGTTGTG+GGG | - | chr8.4:69692570-69692589 | MS.gene84735:CDS | 45.0% |
| !! | CCATGACGGATATTGGTTGT+GGG | - | chr8.4:69692569-69692588 | MS.gene84735:CDS | 45.0% |
| !! | CTGCCGTTTCTTTTTCCATC+GGG | + | chr8.4:69692719-69692738 | None:intergenic | 45.0% |
| !! | GGATATTGGTTGTGGGGTTT+TGG | - | chr8.4:69692576-69692595 | MS.gene84735:CDS | 45.0% |
| ACAGGAGTCCTGATTATGGC+AGG | - | chr8.4:69694140-69694159 | MS.gene84735:intron | 50.0% | |
| ACATGATGAAGCGGCCCATA+AGG | + | chr8.4:69693714-69693733 | None:intergenic | 50.0% | |
| CCAAGTACATCAGCCAAACC+AGG | + | chr8.4:69693277-69693296 | None:intergenic | 50.0% | |
| CCCACAACCAATATCCGTCA+TGG | + | chr8.4:69692572-69692591 | None:intergenic | 50.0% | |
| CTCCTGTTCCTGCCATAATC+AGG | + | chr8.4:69694127-69694146 | None:intergenic | 50.0% | |
| CTGAATATGGCAGATACCGC+AGG | - | chr8.4:69694173-69694192 | MS.gene84735:intron | 50.0% | |
| CTGATATGCTGGCCAGCATA+TGG | + | chr8.4:69692649-69692668 | None:intergenic | 50.0% | |
| CTGCGGTATCTGCCATATTC+AGG | + | chr8.4:69694175-69694194 | None:intergenic | 50.0% | |
| GAAGTTCGTGTGTCAGTTGG+CGG | - | chr8.4:69692389-69692408 | MS.gene84735:intron | 50.0% | |
| GACAGGGTCGACAATTATGG+TGG | - | chr8.4:69693971-69693990 | MS.gene84735:intron | 50.0% | |
| GACTGATGCACATGAAGCTG+TGG | + | chr8.4:69693201-69693220 | None:intergenic | 50.0% | |
| GGCACCACCATATCTGAGTA+TGG | + | chr8.4:69692628-69692647 | None:intergenic | 50.0% | |
| GTCCTGATTATGGCAGGAAC+AGG | - | chr8.4:69694122-69694141 | MS.gene84735:intron | 50.0% | |
| GTCTGTGGAGTATGCTCTGA+GGG | - | chr8.4:69693940-69693959 | MS.gene84735:intron | 50.0% | |
| TACTGCGATCCACCATGTTC+TGG | - | chr8.4:69692474-69692493 | MS.gene84735:intron | 50.0% | |
| TGATGCACATGAAGCTGTGG+AGG | + | chr8.4:69693198-69693217 | None:intergenic | 50.0% | |
| TGCAGATCTGTGGATGGAAG+GGG | + | chr8.4:69692889-69692908 | None:intergenic | 50.0% | |
| TGTCTGTGGAGTATGCTCTG+AGG | - | chr8.4:69693939-69693958 | MS.gene84735:intron | 50.0% | |
| ! | CTCTGAGGGATGATAGTGAC+AGG | - | chr8.4:69693954-69693973 | MS.gene84735:intron | 50.0% |
| ! | GTCTAGTTCCTATGTCCCGA+TGG | - | chr8.4:69692701-69692720 | MS.gene84735:CDS | 50.0% |
| ! | GTCTTTGTGGGCTTCTGGTT+TGG | + | chr8.4:69693627-69693646 | None:intergenic | 50.0% |
| !! | AGCTGTGGAGGTGTTGAATG+TGG | + | chr8.4:69693186-69693205 | None:intergenic | 50.0% |
| !! | ATAGGTATAGTGGACCGGAC+AGG | - | chr8.4:69694092-69694111 | MS.gene84735:intron | 50.0% |
| !! | CATTTTGGCAGGGTGAACGT+GGG | - | chr8.4:69693580-69693599 | MS.gene84735:intron | 50.0% |
| !! | CCTGGTTTGGCTGATGTACT+TGG | - | chr8.4:69693274-69693293 | MS.gene84735:intron | 50.0% |
| !! | GATATGGTGGTGCCATATGC+TGG | - | chr8.4:69692634-69692653 | MS.gene84735:CDS | 50.0% |
| !! | GCCATGACGGATATTGGTTG+TGG | - | chr8.4:69692568-69692587 | MS.gene84735:CDS | 50.0% |
| !! | GCCGGTTTTCGCTGGAAATT+TGG | - | chr8.4:69692011-69692030 | MS.gene84735:CDS | 50.0% |
| !! | GGATAGGAGTGATGGACATG+AGG | - | chr8.4:69692502-69692521 | MS.gene84735:CDS | 50.0% |
| !! | GGTTTGGCTTTGAGCCATCA+CGG | + | chr8.4:69693611-69693630 | None:intergenic | 50.0% |
| !! | TCATTTTGGCAGGGTGAACG+TGG | - | chr8.4:69693579-69693598 | MS.gene84735:intron | 50.0% |
| !!! | ATGAGGCTGCTTTTGTGGCT+CGG | - | chr8.4:69692519-69692538 | MS.gene84735:CDS | 50.0% |
| !!! | TGGACATGAGGCTGCTTTTG+TGG | - | chr8.4:69692514-69692533 | MS.gene84735:CDS | 50.0% |
| ACAGTCGTTCACCAGTGCGA+AGG | - | chr8.4:69694274-69694293 | MS.gene84735:CDS | 55.0% | |
| ACTGGATAGGGTGGTGTCTG+TGG | - | chr8.4:69693925-69693944 | MS.gene84735:intron | 55.0% | |
| AGGCGACCAAGTCCAGACTA+TGG | - | chr8.4:69694046-69694065 | MS.gene84735:intron | 55.0% | |
| AGGCGGAGGAGTCCTGATTA+TGG | - | chr8.4:69694112-69694131 | MS.gene84735:intron | 55.0% | |
| ATCTGTGGATGGAAGGGGAG+CGG | + | chr8.4:69692884-69692903 | None:intergenic | 55.0% | |
| CTACGAGAACGGCCATAGTC+TGG | + | chr8.4:69694061-69694080 | None:intergenic | 55.0% | |
| CTTGCTAGATCTCCCAGTCC+AGG | - | chr8.4:69694016-69694035 | MS.gene84735:intron | 55.0% | |
| GAACGGCCATAGTCTGGACT+TGG | + | chr8.4:69694055-69694074 | None:intergenic | 55.0% | |
| GCCCCCATACTCAGATATGG+TGG | - | chr8.4:69692621-69692640 | MS.gene84735:CDS | 55.0% | |
| GGAGGAGTCCTGATTATGGC+AGG | - | chr8.4:69694116-69694135 | MS.gene84735:intron | 55.0% | |
| TATGGTGGCAGTCCCAGAAG+AGG | - | chr8.4:69693986-69694005 | MS.gene84735:intron | 55.0% | |
| TGACAAGCGACGGCTATCTG+TGG | - | chr8.4:69693441-69693460 | MS.gene84735:intron | 55.0% | |
| ! | TGGTGGATCGCAGTACCCTA+GGG | + | chr8.4:69692469-69692488 | None:intergenic | 55.0% |
| !! | ATGGTGGATCGCAGTACCCT+AGG | + | chr8.4:69692470-69692489 | None:intergenic | 55.0% |
| !! | GCTATCTGTGGAGTGGGCTA+GGG | - | chr8.4:69693453-69693472 | MS.gene84735:intron | 55.0% |
| !!! | GTTTTGGCTTTCCGCCATGG+CGG | - | chr8.4:69692592-69692611 | MS.gene84735:CDS | 55.0% |
| AGCAAGACCCCCTCCTCTTC+TGG | + | chr8.4:69694002-69694021 | None:intergenic | 60.0% | |
| AGCGACGGCTATCTGTGGAG+TGG | - | chr8.4:69693446-69693465 | MS.gene84735:intron | 60.0% | |
| CGCCTGCGATAACCTGGACT+GGG | + | chr8.4:69694031-69694050 | None:intergenic | 60.0% | |
| CTCCCAGTCCAGGTTATCGC+AGG | - | chr8.4:69694026-69694045 | MS.gene84735:intron | 60.0% | |
| CTTGGTCGCCTGCGATAACC+TGG | + | chr8.4:69694037-69694056 | None:intergenic | 60.0% | |
| GCAAGACCCCCTCCTCTTCT+GGG | + | chr8.4:69694001-69694020 | None:intergenic | 60.0% | |
| GCGACGGCTATCTGTGGAGT+GGG | - | chr8.4:69693447-69693466 | MS.gene84735:intron | 60.0% | |
| GTGGCAGTCCCAGAAGAGGA+GGG | - | chr8.4:69693990-69694009 | MS.gene84735:intron | 60.0% | |
| TCGCCTGCGATAACCTGGAC+TGG | + | chr8.4:69694032-69694051 | None:intergenic | 60.0% | |
| TGGCAGTCCCAGAAGAGGAG+GGG | - | chr8.4:69693991-69694010 | MS.gene84735:intron | 60.0% | |
| ! | GGCTATCTGTGGAGTGGGCT+AGG | - | chr8.4:69693452-69693471 | MS.gene84735:intron | 60.0% |
| !! | GGTATAGTGGACCGGACAGG+CGG | - | chr8.4:69694095-69694114 | MS.gene84735:intron | 60.0% |
| !!! | GGGGTTTTGGCTTTCCGCCA+TGG | - | chr8.4:69692589-69692608 | MS.gene84735:CDS | 60.0% |
| ATGGGGGCTTTGCACCGCCA+TGG | + | chr8.4:69692609-69692628 | None:intergenic | 65.0% | |
| GAACGTGGGCGTCACCGTGA+TGG | - | chr8.4:69693594-69693613 | MS.gene84735:intron | 65.0% | |
| GGCAGTCCCAGAAGAGGAGG+GGG | - | chr8.4:69693992-69694011 | MS.gene84735:intron | 65.0% | |
| GGTGGCAGTCCCAGAAGAGG+AGG | - | chr8.4:69693989-69694008 | MS.gene84735:intron | 65.0% | |
| GTGGATGGAAGGGGAGCGGA+AGG | + | chr8.4:69692880-69692899 | None:intergenic | 65.0% | |
| TCAGGACTCCTCCGCCTGTC+CGG | + | chr8.4:69694109-69694128 | None:intergenic | 65.0% | |
| !! | ATAGTGGACCGGACAGGCGG+AGG | - | chr8.4:69694098-69694117 | MS.gene84735:intron | 65.0% |
| GGGGCTTTGCACCGCCATGG+CGG | + | chr8.4:69692606-69692625 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 69692006 | 69694308 | 69692006 | ID=MS.gene84735 |
| chr8.4 | mRNA | 69692006 | 69694308 | 69692006 | ID=MS.gene84735.t1;Parent=MS.gene84735 |
| chr8.4 | exon | 69694203 | 69694308 | 69694203 | ID=MS.gene84735.t1.exon1;Parent=MS.gene84735.t1 |
| chr8.4 | CDS | 69694203 | 69694308 | 69694203 | ID=cds.MS.gene84735.t1;Parent=MS.gene84735.t1 |
| chr8.4 | exon | 69692840 | 69692952 | 69692840 | ID=MS.gene84735.t1.exon2;Parent=MS.gene84735.t1 |
| chr8.4 | CDS | 69692840 | 69692952 | 69692840 | ID=cds.MS.gene84735.t1;Parent=MS.gene84735.t1 |
| chr8.4 | exon | 69692500 | 69692723 | 69692500 | ID=MS.gene84735.t1.exon3;Parent=MS.gene84735.t1 |
| chr8.4 | CDS | 69692500 | 69692723 | 69692500 | ID=cds.MS.gene84735.t1;Parent=MS.gene84735.t1 |
| chr8.4 | exon | 69692120 | 69692395 | 69692120 | ID=MS.gene84735.t1.exon4;Parent=MS.gene84735.t1 |
| chr8.4 | CDS | 69692120 | 69692395 | 69692120 | ID=cds.MS.gene84735.t1;Parent=MS.gene84735.t1 |
| chr8.4 | exon | 69692006 | 69692036 | 69692006 | ID=MS.gene84735.t1.exon5;Parent=MS.gene84735.t1 |
| chr8.4 | CDS | 69692006 | 69692036 | 69692006 | ID=cds.MS.gene84735.t1;Parent=MS.gene84735.t1 |
| Gene Sequence |
| Protein sequence |
