Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85388.t1 | XP_003595165.1 | 85.6 | 548 | 13 | 3 | 1 | 484 | 1 | 546 | 4.90E-259 | 903.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85388.t1 | Q9SU79 | 52.5 | 554 | 163 | 11 | 2 | 478 | 1 | 531 | 3.8e-143 | 509.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85388.t1 | A2Q567 | 85.6 | 548 | 13 | 3 | 1 | 484 | 1 | 546 | 3.6e-259 | 903.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049418 | MS.gene85388 | 0.836644 | 8.29E-57 | -1.69E-46 |
| MS.gene051388 | MS.gene85388 | 0.821769 | 3.39E-53 | -1.69E-46 |
| MS.gene05157 | MS.gene85388 | 0.820249 | 7.58E-53 | -1.69E-46 |
| MS.gene052665 | MS.gene85388 | 0.804642 | 1.96E-49 | -1.69E-46 |
| MS.gene052732 | MS.gene85388 | 0.826777 | 2.25E-54 | -1.69E-46 |
| MS.gene053144 | MS.gene85388 | 0.826929 | 2.07E-54 | -1.69E-46 |
| MS.gene053174 | MS.gene85388 | 0.816622 | 5.03E-52 | -1.69E-46 |
| MS.gene054550 | MS.gene85388 | 0.817645 | 2.96E-52 | -1.69E-46 |
| MS.gene054584 | MS.gene85388 | 0.842057 | 3.26E-58 | -1.69E-46 |
| MS.gene055465 | MS.gene85388 | 0.807208 | 5.65E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene85388 | 0.811472 | 6.88E-51 | -1.69E-46 |
| MS.gene055537 | MS.gene85388 | 0.826201 | 3.09E-54 | -1.69E-46 |
| MS.gene055580 | MS.gene85388 | -0.832802 | 7.68E-56 | -1.69E-46 |
| MS.gene055890 | MS.gene85388 | 0.811999 | 5.29E-51 | -1.69E-46 |
| MS.gene056043 | MS.gene85388 | -0.804219 | 2.40E-49 | -1.69E-46 |
| MS.gene059154 | MS.gene85388 | 0.814173 | 1.76E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85388.t1 | MTR_2g039160 | 86.314 | 548 | 9 | 3 | 1 | 484 | 1 | 546 | 0.0 | 942 |
| MS.gene85388.t1 | MTR_3g055090 | 24.812 | 532 | 243 | 18 | 5 | 474 | 158 | 594 | 9.25e-27 | 114 |
| MS.gene85388.t1 | MTR_1g050535 | 25.636 | 472 | 265 | 20 | 34 | 475 | 232 | 647 | 8.00e-23 | 102 |
| MS.gene85388.t1 | MTR_6g084700 | 25.147 | 509 | 284 | 19 | 3 | 474 | 217 | 665 | 8.83e-23 | 102 |
| MS.gene85388.t1 | MTR_1g050535 | 25.636 | 472 | 265 | 20 | 34 | 475 | 232 | 647 | 8.96e-23 | 102 |
| MS.gene85388.t1 | MTR_8g464450 | 25.615 | 488 | 241 | 21 | 34 | 474 | 185 | 597 | 7.94e-22 | 99.4 |
| MS.gene85388.t1 | MTR_1g023510 | 30.645 | 248 | 126 | 9 | 240 | 473 | 1130 | 1345 | 1.36e-19 | 93.2 |
| MS.gene85388.t1 | MTR_5g090300 | 23.779 | 471 | 289 | 14 | 34 | 483 | 51 | 472 | 4.81e-15 | 77.8 |
| MS.gene85388.t1 | MTR_3g113170 | 29.648 | 199 | 104 | 6 | 280 | 473 | 1177 | 1344 | 2.99e-14 | 76.3 |
| MS.gene85388.t1 | MTR_3g113170 | 29.648 | 199 | 104 | 6 | 280 | 473 | 1177 | 1344 | 3.77e-14 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85388.t1 | AT4G29720 | 52.888 | 554 | 161 | 11 | 2 | 478 | 1 | 531 | 0.0 | 533 |
| MS.gene85388.t1 | AT1G62830 | 27.672 | 524 | 246 | 22 | 3 | 474 | 263 | 705 | 1.67e-27 | 117 |
| MS.gene85388.t1 | AT3G13682 | 25.451 | 499 | 228 | 19 | 34 | 474 | 183 | 595 | 7.28e-25 | 108 |
| MS.gene85388.t1 | AT3G10390 | 25.737 | 509 | 282 | 22 | 5 | 481 | 184 | 628 | 3.92e-23 | 103 |
| MS.gene85388.t1 | AT3G10390 | 25.737 | 509 | 282 | 22 | 5 | 481 | 236 | 680 | 4.65e-23 | 103 |
| MS.gene85388.t1 | AT3G59050 | 24.547 | 497 | 294 | 17 | 4 | 476 | 27 | 466 | 4.70e-23 | 102 |
| MS.gene85388.t1 | AT3G10390 | 25.737 | 509 | 282 | 22 | 5 | 481 | 236 | 680 | 5.31e-23 | 103 |
| MS.gene85388.t1 | AT3G10390 | 25.737 | 509 | 282 | 22 | 5 | 481 | 184 | 628 | 7.16e-23 | 102 |
| MS.gene85388.t1 | AT1G65840 | 25.714 | 490 | 291 | 21 | 5 | 476 | 28 | 462 | 1.72e-22 | 100 |
| MS.gene85388.t1 | AT4G16310 | 25.311 | 241 | 138 | 7 | 243 | 473 | 894 | 1102 | 3.88e-13 | 72.8 |
| MS.gene85388.t1 | AT4G16310 | 25.311 | 241 | 138 | 7 | 243 | 473 | 894 | 1102 | 3.88e-13 | 72.8 |
| MS.gene85388.t1 | AT4G16310 | 25.311 | 241 | 138 | 7 | 243 | 473 | 894 | 1102 | 3.88e-13 | 72.8 |
| MS.gene85388.t1 | AT4G16310 | 25.311 | 241 | 138 | 7 | 243 | 473 | 894 | 1102 | 3.88e-13 | 72.8 |
| MS.gene85388.t1 | AT4G16310 | 25.311 | 241 | 138 | 7 | 243 | 473 | 894 | 1102 | 3.88e-13 | 72.8 |
Find 78 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCTTACTTCAGTGGTCTT+AGG | 0.217029 | 2.1:-47733190 | MS.gene85388:CDS |
| AAACCAAAGATTGTGATAAT+TGG | 0.241698 | 2.1:-47734763 | MS.gene85388:CDS |
| GCTCCAATTATCACAATCTT+TGG | 0.254844 | 2.1:+47734760 | None:intergenic |
| ACACTTGAATTGTTGTAAAT+AGG | 0.269251 | 2.1:+47733539 | None:intergenic |
| GAAGAAGAAGAAGAGGTAAA+TGG | 0.285277 | 2.1:-47734214 | MS.gene85388:CDS |
| GTTCTCTTATCTTGGTTTGC+TGG | 0.312436 | 2.1:-47733518 | MS.gene85388:CDS |
| TTATACTTCAGCTGGTGATT+TGG | 0.313308 | 2.1:-47734122 | MS.gene85388:CDS |
| AGAATCAACACATCAGAATT+TGG | 0.315413 | 2.1:-47734634 | MS.gene85388:CDS |
| GAAGAAGAGGTAAATGGTTA+TGG | 0.320591 | 2.1:-47734208 | MS.gene85388:CDS |
| TGAAATACCATTTGAAGAAA+TGG | 0.327279 | 2.1:+47733629 | None:intergenic |
| ATTCAAGTGTTCTCTTATCT+TGG | 0.345001 | 2.1:-47733526 | MS.gene85388:CDS |
| TTGCTATTATCTTTCATCAT+TGG | 0.352036 | 2.1:+47733284 | None:intergenic |
| GAAACAGGATCAACAATAGA+AGG | 0.352608 | 2.1:+47734433 | None:intergenic |
| GCAATTTCAAGGCTAGGTTT+TGG | 0.369405 | 2.1:-47733731 | MS.gene85388:CDS |
| TTCAACATTATCATTGTGTT+GGG | 0.378059 | 2.1:-47733151 | MS.gene85388:CDS |
| AAAGCTTCTTCTTCAAACTT+TGG | 0.392889 | 2.1:-47734313 | MS.gene85388:CDS |
| TGTTGAGCAATCTTGTGAAT+TGG | 0.397369 | 2.1:+47734559 | None:intergenic |
| GTTGTTTCCATTTCTTCAAA+TGG | 0.400506 | 2.1:-47733636 | MS.gene85388:CDS |
| TCAAAGTTGAAGCAATTTCA+AGG | 0.401907 | 2.1:-47733742 | MS.gene85388:intron |
| AGCTTACTTCAGTGGTCTTA+GGG | 0.402916 | 2.1:-47733189 | MS.gene85388:CDS |
| TTATCTTTCATCATTGGTAA+TGG | 0.409324 | 2.1:+47733290 | None:intergenic |
| AGAGCTTGTTTGCTGCTGTT+AGG | 0.419215 | 2.1:+47734725 | None:intergenic |
| CCACCTGGTTTAATTCAGTT+AGG | 0.422537 | 2.1:-47733992 | MS.gene85388:intron |
| AGGTAAATGGTTATGGAGAT+TGG | 0.425158 | 2.1:-47734201 | MS.gene85388:CDS |
| CACTTCACTCTGACCAACCT+TGG | 0.426510 | 2.1:-47734528 | MS.gene85388:CDS |
| TTTGAACTCATTGTTGTTGA+AGG | 0.427344 | 2.1:-47734676 | MS.gene85388:CDS |
| CTTCAACATTATCATTGTGT+TGG | 0.427755 | 2.1:-47733152 | MS.gene85388:CDS |
| GTGGTCTTAGGGAAGCTAAT+AGG | 0.439374 | 2.1:-47733178 | MS.gene85388:CDS |
| TATTTGAAAAGCTTTGAAAC+AGG | 0.443778 | 2.1:+47734418 | None:intergenic |
| GTTGAAGCAATTTCAAGGCT+AGG | 0.446034 | 2.1:-47733737 | MS.gene85388:CDS |
| GCTTGATGCTTACTTTGAAT+CGG | 0.455249 | 2.1:-47734248 | MS.gene85388:CDS |
| ACTTCACTCTGACCAACCTT+GGG | 0.455964 | 2.1:-47734527 | MS.gene85388:CDS |
| GCTACATGGATCCATGGAAT+TGG | 0.463411 | 2.1:-47734589 | MS.gene85388:CDS |
| AGTGAGTATAGAATGTTTCC+AGG | 0.464736 | 2.1:-47734076 | MS.gene85388:CDS |
| GTTGAAGGTGGAACAAGAAT+TGG | 0.493482 | 2.1:-47734661 | MS.gene85388:CDS |
| ACCTTCAGAAATTGTTGTGA+GGG | 0.505730 | 2.1:+47734471 | None:intergenic |
| CCTGCAAACAAAATTTGAAG+TGG | 0.510882 | 2.1:+47733251 | None:intergenic |
| CTACACTTCAACAGCTTCAA+AGG | 0.511057 | 2.1:-47734704 | MS.gene85388:CDS |
| GAAGAAATCACAATTGCTAA+AGG | 0.512712 | 2.1:-47734052 | MS.gene85388:CDS |
| CTCACAACAATTTCTGAAGG+TGG | 0.513258 | 2.1:-47734469 | MS.gene85388:CDS |
| CTTGATGATGAAAATTCAGA+AGG | 0.518084 | 2.1:-47733659 | MS.gene85388:CDS |
| TCATACAGTTATGTTGCAGT+TGG | 0.518630 | 2.1:-47733347 | MS.gene85388:CDS |
| ACTCATTATTCAACAACTCA+TGG | 0.519273 | 2.1:-47733212 | MS.gene85388:CDS |
| TTGGACTGTTACCAATTCCA+TGG | 0.525362 | 2.1:+47734578 | None:intergenic |
| TGACCAACCTTGGGAGTGCA+TGG | 0.529658 | 2.1:-47734518 | MS.gene85388:CDS |
| ATAATTGGAGCTGGAATGGC+AGG | 0.534793 | 2.1:-47734748 | MS.gene85388:CDS |
| AAAGATGAAGAAATAATCAA+TGG | 0.536875 | 2.1:-47733467 | MS.gene85388:CDS |
| TTAACTAAAGAAACTGCAAA+AGG | 0.536895 | 2.1:-47734370 | MS.gene85388:CDS |
| AAGATTGTGATAATTGGAGC+TGG | 0.539653 | 2.1:-47734757 | MS.gene85388:CDS |
| GAGAGGACTTATACTTCAGC+TGG | 0.547554 | 2.1:-47734130 | MS.gene85388:CDS |
| GCAATTGTGATTTCTTCACC+TGG | 0.548683 | 2.1:+47734058 | None:intergenic |
| TGGTGGTGACAAGATTGAGA+TGG | 0.554512 | 2.1:-47734614 | MS.gene85388:CDS |
| TGTGATAATTGGAGCTGGAA+TGG | 0.568039 | 2.1:-47734752 | MS.gene85388:CDS |
| ATGGGAGCTACATGGATCCA+TGG | 0.574347 | 2.1:-47734595 | MS.gene85388:CDS |
| GTTGGTCAGAGTGAAGTGAA+TGG | 0.579847 | 2.1:+47734533 | None:intergenic |
| TTACCATCCATGCACTCCCA+AGG | 0.584380 | 2.1:+47734511 | None:intergenic |
| GAACTCATTGTTGTTGAAGG+TGG | 0.587409 | 2.1:-47734673 | MS.gene85388:CDS |
| CATCCATGCACTCCCAAGGT+TGG | 0.588857 | 2.1:+47734515 | None:intergenic |
| CAACCTTGGGAGTGCATGGA+TGG | 0.589677 | 2.1:-47734514 | MS.gene85388:CDS |
| TATGTTGCAGTTGGTTCAAG+TGG | 0.591461 | 2.1:-47733338 | MS.gene85388:CDS |
| TATCTCATGGAGTATTCTCA+AGG | 0.592364 | 2.1:-47734397 | MS.gene85388:CDS |
| AGATTGAGATGGGAGCTACA+TGG | 0.593418 | 2.1:-47734603 | MS.gene85388:CDS |
| GTCATTGTTACTGTTTCACT+AGG | 0.594629 | 2.1:-47733857 | MS.gene85388:intron |
| TTCACCTCAAAATGAAACAA+AGG | 0.596200 | 2.1:-47733606 | MS.gene85388:CDS |
| AGTTCTTAGTTACTATAACA+TGG | 0.609673 | 2.1:-47734341 | MS.gene85388:CDS |
| CACCTTCAGAAATTGTTGTG+AGG | 0.611138 | 2.1:+47734470 | None:intergenic |
| TGGTGAAGATTTAGATACAA+TGG | 0.612781 | 2.1:-47733318 | MS.gene85388:CDS |
| GGTGGTGACAAGATTGAGAT+GGG | 0.612920 | 2.1:-47734613 | MS.gene85388:CDS |
| TCCCTCACAACAATTTCTGA+AGG | 0.614942 | 2.1:-47734472 | MS.gene85388:CDS |
| TTGATGATGAAAATTCAGAA+GGG | 0.619972 | 2.1:-47733658 | MS.gene85388:CDS |
| GAAGGTGGAACAAGAATTGG+TGG | 0.621735 | 2.1:-47734658 | MS.gene85388:CDS |
| TTACCTAACTGAATTAAACC+AGG | 0.637986 | 2.1:+47733989 | None:intergenic |
| ATCAACACATCAGAATTTGG+TGG | 0.642669 | 2.1:-47734631 | MS.gene85388:CDS |
| ACTCATGGAGCTTACTTCAG+TGG | 0.659052 | 2.1:-47733197 | MS.gene85388:CDS |
| CCTAACTGAATTAAACCAGG+TGG | 0.685115 | 2.1:+47733992 | None:intergenic |
| CAAAGGACAAGAAAATACCA+TGG | 0.714988 | 2.1:-47733589 | MS.gene85388:CDS |
| AGGACAAGAAAATACCATGG+TGG | 0.728606 | 2.1:-47733586 | MS.gene85388:CDS |
| CAATGTATGAGAATACTGAG+AGG | 0.762590 | 2.1:-47734147 | MS.gene85388:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGTAAAAAAAATTGAA+TGG | - | chr2.1:47733944-47733963 | MS.gene85388:intron | 10.0% |
| !! | AAAGATGAAGAAATAATCAA+TGG | - | chr2.1:47734444-47734463 | MS.gene85388:CDS | 20.0% |
| !! | TCTAAAAAGAATCTTAGTAT+TGG | - | chr2.1:47733622-47733641 | MS.gene85388:CDS | 20.0% |
| !!! | ATAAAGTTTTGAAGAGTAAA+TGG | - | chr2.1:47734517-47734536 | MS.gene85388:CDS | 20.0% |
| !!! | TAAAGTTTTGAAGAGTAAAT+GGG | - | chr2.1:47734518-47734537 | MS.gene85388:CDS | 20.0% |
| ! | AAACCAAAGATTGTGATAAT+TGG | - | chr2.1:47733148-47733167 | MS.gene85388:CDS | 25.0% |
| ! | ACACTTGAATTGTTGTAAAT+AGG | + | chr2.1:47734375-47734394 | None:intergenic | 25.0% |
| ! | AGTTCTTAGTTACTATAACA+TGG | - | chr2.1:47733570-47733589 | MS.gene85388:CDS | 25.0% |
| ! | TGAAATACCATTTGAAGAAA+TGG | + | chr2.1:47734285-47734304 | None:intergenic | 25.0% |
| ! | TTAACTAAAGAAACTGCAAA+AGG | - | chr2.1:47733541-47733560 | MS.gene85388:CDS | 25.0% |
| ! | TTATCTTTCATCATTGGTAA+TGG | + | chr2.1:47734624-47734643 | None:intergenic | 25.0% |
| ! | TTCAACATTATCATTGTGTT+GGG | - | chr2.1:47734760-47734779 | MS.gene85388:CDS | 25.0% |
| !! | AAAGCTTTTCAAATATCTCA+TGG | - | chr2.1:47733501-47733520 | MS.gene85388:CDS | 25.0% |
| !! | GCTATGATGATAATTGTTTT+AGG | - | chr2.1:47733983-47734002 | MS.gene85388:intron | 25.0% |
| !! | TCAAATTTCACTTCATTTTG+AGG | + | chr2.1:47734498-47734517 | None:intergenic | 25.0% |
| !! | TTGCTATTATCTTTCATCAT+TGG | + | chr2.1:47734630-47734649 | None:intergenic | 25.0% |
| !!! | AAAGTTTTGAAGAGTAAATG+GGG | - | chr2.1:47734519-47734538 | MS.gene85388:CDS | 25.0% |
| !!! | TATTTGAAAAGCTTTGAAAC+AGG | + | chr2.1:47733496-47733515 | None:intergenic | 25.0% |
| !!! | TTGATGATGAAAATTCAGAA+GGG | - | chr2.1:47734253-47734272 | MS.gene85388:CDS | 25.0% |
| AAAGCTTCTTCTTCAAACTT+TGG | - | chr2.1:47733598-47733617 | MS.gene85388:CDS | 30.0% | |
| ACTCATTATTCAACAACTCA+TGG | - | chr2.1:47734699-47734718 | MS.gene85388:CDS | 30.0% | |
| AGAATCAACACATCAGAATT+TGG | - | chr2.1:47733277-47733296 | MS.gene85388:CDS | 30.0% | |
| ATTCAAGTGTTCTCTTATCT+TGG | - | chr2.1:47734385-47734404 | MS.gene85388:CDS | 30.0% | |
| CTGTATGATCCTAAAAACAA+AGG | + | chr2.1:47734552-47734571 | None:intergenic | 30.0% | |
| CTTCAACATTATCATTGTGT+TGG | - | chr2.1:47734759-47734778 | MS.gene85388:CDS | 30.0% | |
| GAAGAAATCACAATTGCTAA+AGG | - | chr2.1:47733859-47733878 | MS.gene85388:CDS | 30.0% | |
| TCAAAGTTGAAGCAATTTCA+AGG | - | chr2.1:47734169-47734188 | MS.gene85388:CDS | 30.0% | |
| TGGTGAAGATTTAGATACAA+TGG | - | chr2.1:47734593-47734612 | MS.gene85388:CDS | 30.0% | |
| TTACCTAACTGAATTAAACC+AGG | + | chr2.1:47733925-47733944 | None:intergenic | 30.0% | |
| TTCACCTCAAAATGAAACAA+AGG | - | chr2.1:47734305-47734324 | MS.gene85388:CDS | 30.0% | |
| ! | ACTTTGAAAGATGGAAGTTT+AGG | + | chr2.1:47734156-47734175 | None:intergenic | 30.0% |
| ! | ATTGCTTCAACTTTGAAAGA+TGG | + | chr2.1:47734165-47734184 | None:intergenic | 30.0% |
| ! | GATGATGATGATGATGATAA+AGG | - | chr2.1:47734117-47734136 | MS.gene85388:CDS | 30.0% |
| ! | GTTGTTTCCATTTCTTCAAA+TGG | - | chr2.1:47734275-47734294 | MS.gene85388:CDS | 30.0% |
| ! | TTTGAACTCATTGTTGTTGA+AGG | - | chr2.1:47733235-47733254 | MS.gene85388:CDS | 30.0% |
| !! | CTTGATGATGAAAATTCAGA+AGG | - | chr2.1:47734252-47734271 | MS.gene85388:CDS | 30.0% |
| !! | TTGTCCTTTGTTTCATTTTG+AGG | + | chr2.1:47734312-47734331 | None:intergenic | 30.0% |
| !!! | AAGTTTTGAAGAGTAAATGG+GGG | - | chr2.1:47734520-47734539 | MS.gene85388:CDS | 30.0% |
| !!! | ATTGGTTCTTTTTTGAGACA+AGG | - | chr2.1:47733640-47733659 | MS.gene85388:CDS | 30.0% |
| !!! | TTGGTTCTTTTTTGAGACAA+GGG | - | chr2.1:47733641-47733660 | MS.gene85388:CDS | 30.0% |
| AAGATTGTGATAATTGGAGC+TGG | - | chr2.1:47733154-47733173 | MS.gene85388:CDS | 35.0% | |
| ACCTTCAGAAATTGTTGTGA+GGG | + | chr2.1:47733443-47733462 | None:intergenic | 35.0% | |
| AGAAGAAGAAGAAGAAGAAG+AGG | - | chr2.1:47733690-47733709 | MS.gene85388:CDS | 35.0% | |
| AGGTAAATGGTTATGGAGAT+TGG | - | chr2.1:47733710-47733729 | MS.gene85388:CDS | 35.0% | |
| AGTGAGTATAGAATGTTTCC+AGG | - | chr2.1:47733835-47733854 | MS.gene85388:intron | 35.0% | |
| ATCAACACATCAGAATTTGG+TGG | - | chr2.1:47733280-47733299 | MS.gene85388:CDS | 35.0% | |
| CAAAGGACAAGAAAATACCA+TGG | - | chr2.1:47734322-47734341 | MS.gene85388:CDS | 35.0% | |
| CAATGTATGAGAATACTGAG+AGG | - | chr2.1:47733764-47733783 | MS.gene85388:intron | 35.0% | |
| CCTGCAAACAAAATTTGAAG+TGG | + | chr2.1:47734663-47734682 | None:intergenic | 35.0% | |
| GAAACAGGATCAACAATAGA+AGG | + | chr2.1:47733481-47733500 | None:intergenic | 35.0% | |
| GAAGAAGAAGAAGAGGTAAA+TGG | - | chr2.1:47733697-47733716 | MS.gene85388:CDS | 35.0% | |
| GAAGAAGAGGTAAATGGTTA+TGG | - | chr2.1:47733703-47733722 | MS.gene85388:CDS | 35.0% | |
| GCTCCAATTATCACAATCTT+TGG | + | chr2.1:47733154-47733173 | None:intergenic | 35.0% | |
| GCTTGATGCTTACTTTGAAT+CGG | - | chr2.1:47733663-47733682 | MS.gene85388:CDS | 35.0% | |
| GTCATTGTTACTGTTTCACT+AGG | - | chr2.1:47734054-47734073 | MS.gene85388:CDS | 35.0% | |
| GTTAAGCTACATTTCTGTGA+TGG | - | chr2.1:47734009-47734028 | MS.gene85388:CDS | 35.0% | |
| TCACAGAAATGTAGCTTAAC+AGG | + | chr2.1:47734009-47734028 | None:intergenic | 35.0% | |
| TCATACAGTTATGTTGCAGT+TGG | - | chr2.1:47734564-47734583 | MS.gene85388:CDS | 35.0% | |
| TGTTGAGCAATCTTGTGAAT+TGG | + | chr2.1:47733355-47733374 | None:intergenic | 35.0% | |
| TTATACTTCAGCTGGTGATT+TGG | - | chr2.1:47733789-47733808 | MS.gene85388:intron | 35.0% | |
| ! | TATCTCATGGAGTATTCTCA+AGG | - | chr2.1:47733514-47733533 | MS.gene85388:CDS | 35.0% |
| !! | CCACTTCAAATTTTGTTTGC+AGG | - | chr2.1:47734660-47734679 | MS.gene85388:CDS | 35.0% |
| AGGACAAGAAAATACCATGG+TGG | - | chr2.1:47734325-47734344 | MS.gene85388:CDS | 40.0% | |
| CACCTTCAGAAATTGTTGTG+AGG | + | chr2.1:47733444-47733463 | None:intergenic | 40.0% | |
| CCACCTGGTTTAATTCAGTT+AGG | - | chr2.1:47733919-47733938 | MS.gene85388:intron | 40.0% | |
| CCTAACTGAATTAAACCAGG+TGG | + | chr2.1:47733922-47733941 | None:intergenic | 40.0% | |
| CTACACTTCAACAGCTTCAA+AGG | - | chr2.1:47733207-47733226 | MS.gene85388:CDS | 40.0% | |
| GCAATTGTGATTTCTTCACC+TGG | + | chr2.1:47733856-47733875 | None:intergenic | 40.0% | |
| GTTGAAGCAATTTCAAGGCT+AGG | - | chr2.1:47734174-47734193 | MS.gene85388:CDS | 40.0% | |
| GTTGAAGGTGGAACAAGAAT+TGG | - | chr2.1:47733250-47733269 | MS.gene85388:CDS | 40.0% | |
| TCCCTCACAACAATTTCTGA+AGG | - | chr2.1:47733439-47733458 | MS.gene85388:CDS | 40.0% | |
| TGTGATAATTGGAGCTGGAA+TGG | - | chr2.1:47733159-47733178 | MS.gene85388:CDS | 40.0% | |
| TTGGACTGTTACCAATTCCA+TGG | + | chr2.1:47733336-47733355 | None:intergenic | 40.0% | |
| ! | AGCTTACTTCAGTGGTCTTA+GGG | - | chr2.1:47734722-47734741 | MS.gene85388:CDS | 40.0% |
| ! | ATAGCTTCTGTTTTACCACC+TGG | - | chr2.1:47733904-47733923 | MS.gene85388:intron | 40.0% |
| ! | CTCACAACAATTTCTGAAGG+TGG | - | chr2.1:47733442-47733461 | MS.gene85388:CDS | 40.0% |
| ! | GAACTCATTGTTGTTGAAGG+TGG | - | chr2.1:47733238-47733257 | MS.gene85388:CDS | 40.0% |
| ! | GCAATTTCAAGGCTAGGTTT+TGG | - | chr2.1:47734180-47734199 | MS.gene85388:CDS | 40.0% |
| ! | TATGTTGCAGTTGGTTCAAG+TGG | - | chr2.1:47734573-47734592 | MS.gene85388:CDS | 40.0% |
| !! | GTTCTCTTATCTTGGTTTGC+TGG | - | chr2.1:47734393-47734412 | MS.gene85388:CDS | 40.0% |
| !!! | GGGACTGATCCTTTGTTTTT+AGG | - | chr2.1:47734540-47734559 | MS.gene85388:CDS | 40.0% |
| ACTCATGGAGCTTACTTCAG+TGG | - | chr2.1:47734714-47734733 | MS.gene85388:CDS | 45.0% | |
| ACTTCACTCTGACCAACCTT+GGG | - | chr2.1:47733384-47733403 | MS.gene85388:CDS | 45.0% | |
| AGATTGAGATGGGAGCTACA+TGG | - | chr2.1:47733308-47733327 | MS.gene85388:CDS | 45.0% | |
| ATAATTGGAGCTGGAATGGC+AGG | - | chr2.1:47733163-47733182 | MS.gene85388:CDS | 45.0% | |
| GAAGGTGGAACAAGAATTGG+TGG | - | chr2.1:47733253-47733272 | MS.gene85388:CDS | 45.0% | |
| GAGAGGACTTATACTTCAGC+TGG | - | chr2.1:47733781-47733800 | MS.gene85388:intron | 45.0% | |
| GAGCTTACTTCAGTGGTCTT+AGG | - | chr2.1:47734721-47734740 | MS.gene85388:CDS | 45.0% | |
| GCTACATGGATCCATGGAAT+TGG | - | chr2.1:47733322-47733341 | MS.gene85388:CDS | 45.0% | |
| GGTGGTGACAAGATTGAGAT+GGG | - | chr2.1:47733298-47733317 | MS.gene85388:CDS | 45.0% | |
| GTTGGTCAGAGTGAAGTGAA+TGG | + | chr2.1:47733381-47733400 | None:intergenic | 45.0% | |
| ! | AGAGCTTGTTTGCTGCTGTT+AGG | + | chr2.1:47733189-47733208 | None:intergenic | 45.0% |
| ! | GTGGTCTTAGGGAAGCTAAT+AGG | - | chr2.1:47734733-47734752 | MS.gene85388:CDS | 45.0% |
| ! | TGGTGGTGACAAGATTGAGA+TGG | - | chr2.1:47733297-47733316 | MS.gene85388:CDS | 45.0% |
| !!! | GCTGTTTTTCTCATCCACCA+TGG | + | chr2.1:47734342-47734361 | None:intergenic | 45.0% |
| ATGGGAGCTACATGGATCCA+TGG | - | chr2.1:47733316-47733335 | MS.gene85388:CDS | 50.0% | |
| CACTTCACTCTGACCAACCT+TGG | - | chr2.1:47733383-47733402 | MS.gene85388:CDS | 50.0% | |
| TTACCATCCATGCACTCCCA+AGG | + | chr2.1:47733403-47733422 | None:intergenic | 50.0% | |
| CATCCATGCACTCCCAAGGT+TGG | + | chr2.1:47733399-47733418 | None:intergenic | 55.0% | |
| ! | CAACCTTGGGAGTGCATGGA+TGG | - | chr2.1:47733397-47733416 | MS.gene85388:CDS | 55.0% |
| ! | TGACCAACCTTGGGAGTGCA+TGG | - | chr2.1:47733393-47733412 | MS.gene85388:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 47733136 | 47734797 | 47733136 | ID=MS.gene85388 |
| chr2.1 | mRNA | 47733136 | 47734797 | 47733136 | ID=MS.gene85388.t1;Parent=MS.gene85388 |
| chr2.1 | exon | 47733993 | 47734797 | 47733993 | ID=MS.gene85388.t1.exon1;Parent=MS.gene85388.t1 |
| chr2.1 | CDS | 47733993 | 47734797 | 47733993 | ID=cds.MS.gene85388.t1;Parent=MS.gene85388.t1 |
| chr2.1 | exon | 47733858 | 47733884 | 47733858 | ID=MS.gene85388.t1.exon2;Parent=MS.gene85388.t1 |
| chr2.1 | CDS | 47733858 | 47733884 | 47733858 | ID=cds.MS.gene85388.t1;Parent=MS.gene85388.t1 |
| chr2.1 | exon | 47733136 | 47733758 | 47733136 | ID=MS.gene85388.t1.exon3;Parent=MS.gene85388.t1 |
| chr2.1 | CDS | 47733136 | 47733758 | 47733136 | ID=cds.MS.gene85388.t1;Parent=MS.gene85388.t1 |
| Gene Sequence |
| Protein sequence |
