Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85513.t1 | RHN65785.1 | 60.5 | 468 | 24 | 1 | 1 | 307 | 1 | 468 | 3.50E-141 | 511.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85513.t1 | Q9ZWB4 | 40.4 | 171 | 99 | 3 | 6 | 174 | 9 | 178 | 1.1e-34 | 148.7 |
| MS.gene85513.t1 | Q9ZWB4 | 30.1 | 136 | 92 | 2 | 166 | 301 | 333 | 465 | 9.9e-12 | 72.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85513.t1 | A0A396IPG6 | 60.5 | 468 | 24 | 1 | 1 | 307 | 1 | 468 | 2.5e-141 | 511.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053074 | MS.gene85513 | 0.83131 | 1.79E-55 | -1.69E-46 |
| MS.gene054185 | MS.gene85513 | 0.802421 | 5.66E-49 | -1.69E-46 |
| MS.gene058168 | MS.gene85513 | 0.809371 | 1.96E-50 | -1.69E-46 |
| MS.gene059006 | MS.gene85513 | 0.836628 | 8.37E-57 | -1.69E-46 |
| MS.gene059124 | MS.gene85513 | 0.809681 | 1.68E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85513.t1 | MTR_7g015860 | 82.759 | 174 | 30 | 0 | 1 | 174 | 1 | 174 | 1.03e-101 | 306 |
| MS.gene85513.t1 | MTR_7g015860 | 53.378 | 148 | 50 | 4 | 157 | 304 | 336 | 464 | 3.70e-38 | 140 |
| MS.gene85513.t1 | MTR_8g012750 | 51.163 | 172 | 82 | 1 | 5 | 174 | 3 | 174 | 1.85e-54 | 184 |
| MS.gene85513.t1 | MTR_8g012750 | 34.559 | 136 | 83 | 2 | 174 | 303 | 340 | 475 | 4.32e-15 | 75.9 |
| MS.gene85513.t1 | MTR_2g089765 | 43.966 | 232 | 118 | 4 | 5 | 225 | 16 | 246 | 2.79e-54 | 184 |
| MS.gene85513.t1 | MTR_2g089765 | 38.732 | 142 | 72 | 5 | 174 | 306 | 353 | 488 | 1.73e-20 | 91.7 |
| MS.gene85513.t1 | MTR_2g089670 | 56.069 | 173 | 72 | 3 | 5 | 174 | 22 | 193 | 8.31e-51 | 175 |
| MS.gene85513.t1 | MTR_2g089670 | 38.406 | 138 | 78 | 3 | 174 | 306 | 348 | 483 | 3.82e-18 | 84.7 |
| MS.gene85513.t1 | MTR_2g089665 | 50.867 | 173 | 81 | 3 | 5 | 174 | 2 | 173 | 9.75e-51 | 171 |
| MS.gene85513.t1 | MTR_2g089650 | 39.698 | 199 | 109 | 4 | 4 | 196 | 8 | 201 | 7.04e-40 | 145 |
| MS.gene85513.t1 | MTR_2g089650 | 33.333 | 132 | 76 | 4 | 176 | 303 | 343 | 466 | 7.83e-13 | 68.9 |
| MS.gene85513.t1 | MTR_3g435300 | 35.185 | 216 | 132 | 3 | 6 | 215 | 4 | 217 | 5.45e-38 | 135 |
| MS.gene85513.t1 | MTR_2g089755 | 41.714 | 175 | 94 | 3 | 28 | 196 | 37 | 209 | 2.45e-36 | 136 |
| MS.gene85513.t1 | MTR_2g089755 | 32.283 | 127 | 80 | 4 | 176 | 301 | 355 | 476 | 4.12e-13 | 69.7 |
| MS.gene85513.t1 | MTR_3g028210 | 42.105 | 171 | 95 | 2 | 5 | 174 | 8 | 175 | 4.40e-36 | 135 |
| MS.gene85513.t1 | MTR_3g028210 | 33.094 | 139 | 77 | 3 | 174 | 303 | 336 | 467 | 2.34e-12 | 67.4 |
| MS.gene85513.t1 | MTR_3g087640 | 34.545 | 220 | 136 | 3 | 4 | 216 | 8 | 226 | 1.45e-35 | 134 |
| MS.gene85513.t1 | MTR_3g087640 | 33.835 | 133 | 78 | 4 | 174 | 301 | 346 | 473 | 8.35e-15 | 75.1 |
| MS.gene85513.t1 | MTR_7g014330 | 38.693 | 199 | 107 | 5 | 5 | 196 | 2 | 192 | 2.88e-34 | 130 |
| MS.gene85513.t1 | MTR_7g014330 | 29.365 | 126 | 84 | 2 | 174 | 295 | 327 | 451 | 2.03e-11 | 64.7 |
| MS.gene85513.t1 | MTR_2g089735 | 36.667 | 210 | 127 | 5 | 32 | 237 | 30 | 237 | 8.45e-34 | 129 |
| MS.gene85513.t1 | MTR_2g089735 | 34.247 | 146 | 82 | 4 | 157 | 301 | 330 | 462 | 3.11e-15 | 76.3 |
| MS.gene85513.t1 | MTR_7g014230 | 37.079 | 178 | 105 | 4 | 6 | 182 | 5 | 176 | 6.01e-31 | 121 |
| MS.gene85513.t1 | MTR_7g014230 | 29.921 | 127 | 84 | 2 | 174 | 296 | 329 | 454 | 2.01e-12 | 67.8 |
| MS.gene85513.t1 | MTR_7g014250 | 37.949 | 195 | 106 | 5 | 6 | 193 | 3 | 189 | 1.67e-30 | 119 |
| MS.gene85513.t1 | MTR_7g014250 | 31.148 | 122 | 83 | 1 | 174 | 295 | 331 | 451 | 5.24e-12 | 66.6 |
| MS.gene85513.t1 | MTR_7g014630 | 38.286 | 175 | 94 | 5 | 5 | 174 | 9 | 174 | 9.33e-30 | 116 |
| MS.gene85513.t1 | MTR_6g015850 | 36.413 | 184 | 107 | 3 | 2 | 182 | 5 | 181 | 2.61e-29 | 116 |
| MS.gene85513.t1 | MTR_6g015850 | 29.496 | 139 | 82 | 4 | 174 | 303 | 329 | 460 | 1.69e-12 | 67.8 |
| MS.gene85513.t1 | MTR_7g014160 | 37.288 | 177 | 98 | 4 | 2 | 174 | 6 | 173 | 3.07e-29 | 116 |
| MS.gene85513.t1 | MTR_7g014160 | 37.113 | 97 | 54 | 1 | 203 | 292 | 369 | 465 | 9.32e-11 | 62.8 |
| MS.gene85513.t1 | MTR_7g014200 | 37.079 | 178 | 98 | 5 | 2 | 174 | 6 | 174 | 3.47e-29 | 116 |
| MS.gene85513.t1 | MTR_7g014180 | 36.313 | 179 | 101 | 4 | 4 | 178 | 6 | 175 | 2.04e-27 | 105 |
| MS.gene85513.t1 | MTR_6g015815 | 36.667 | 180 | 104 | 3 | 6 | 182 | 9 | 181 | 5.59e-27 | 110 |
| MS.gene85513.t1 | MTR_6g015815 | 28.571 | 140 | 83 | 3 | 174 | 303 | 331 | 463 | 8.59e-13 | 68.9 |
| MS.gene85513.t1 | MTR_7g014610 | 37.143 | 175 | 99 | 3 | 3 | 174 | 6 | 172 | 2.10e-25 | 105 |
| MS.gene85513.t1 | MTR_7g014610 | 44.444 | 63 | 35 | 0 | 234 | 296 | 409 | 471 | 8.69e-11 | 62.8 |
| MS.gene85513.t1 | MTR_6g015830 | 35.676 | 185 | 108 | 4 | 2 | 182 | 5 | 182 | 3.37e-25 | 105 |
| MS.gene85513.t1 | MTR_6g015830 | 28.058 | 139 | 84 | 4 | 174 | 303 | 332 | 463 | 6.96e-12 | 66.2 |
| MS.gene85513.t1 | MTR_7g014620 | 35.256 | 156 | 90 | 3 | 23 | 174 | 10 | 158 | 2.91e-24 | 102 |
| MS.gene85513.t1 | MTR_6g015320 | 34.503 | 171 | 102 | 4 | 5 | 174 | 8 | 169 | 7.75e-21 | 92.8 |
| MS.gene85513.t1 | MTR_6g015320 | 29.851 | 134 | 79 | 4 | 171 | 303 | 338 | 457 | 1.53e-11 | 65.1 |
| MS.gene85513.t1 | MTR_7g013850 | 31.694 | 183 | 107 | 7 | 1 | 174 | 4 | 177 | 3.03e-17 | 82.0 |
| MS.gene85513.t1 | MTR_6g015315 | 34.722 | 144 | 86 | 3 | 32 | 174 | 30 | 166 | 2.81e-14 | 73.2 |
| MS.gene85513.t1 | MTR_6g015315 | 29.630 | 135 | 88 | 3 | 174 | 303 | 323 | 455 | 4.23e-14 | 72.8 |
| MS.gene85513.t1 | MTR_2g089745 | 38.667 | 75 | 46 | 0 | 229 | 303 | 6 | 80 | 1.79e-13 | 65.5 |
| MS.gene85513.t1 | MTR_7g014340 | 48.529 | 68 | 34 | 1 | 6 | 72 | 3 | 70 | 3.39e-13 | 65.1 |
| MS.gene85513.t1 | MTR_3g435290 | 32.283 | 127 | 76 | 4 | 180 | 303 | 1 | 120 | 3.05e-12 | 63.2 |
| MS.gene85513.t1 | MTR_7g014220 | 49.153 | 59 | 30 | 0 | 20 | 78 | 10 | 68 | 6.46e-12 | 60.8 |
| MS.gene85513.t1 | MTR_7g014310 | 33.898 | 118 | 75 | 2 | 166 | 283 | 192 | 306 | 1.23e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85513.t1 | AT1G03940 | 40.351 | 171 | 99 | 3 | 6 | 174 | 9 | 178 | 4.39e-41 | 149 |
| MS.gene85513.t1 | AT1G03940 | 30.147 | 136 | 92 | 2 | 166 | 301 | 333 | 465 | 1.66e-14 | 73.9 |
| MS.gene85513.t1 | AT1G03495 | 39.181 | 171 | 101 | 3 | 6 | 174 | 9 | 178 | 2.42e-39 | 141 |
| MS.gene85513.t1 | AT3G29670 | 33.333 | 180 | 110 | 4 | 7 | 182 | 5 | 178 | 2.49e-23 | 99.8 |
| MS.gene85513.t1 | AT5G39080 | 30.857 | 175 | 114 | 2 | 1 | 174 | 1 | 169 | 5.51e-23 | 99.0 |
| MS.gene85513.t1 | AT5G39090 | 31.148 | 183 | 119 | 3 | 1 | 182 | 1 | 177 | 9.25e-22 | 95.1 |
| MS.gene85513.t1 | AT3G29680 | 33.750 | 160 | 99 | 3 | 24 | 182 | 21 | 174 | 3.86e-20 | 90.5 |
| MS.gene85513.t1 | AT3G29680 | 26.984 | 126 | 82 | 4 | 174 | 292 | 317 | 439 | 2.83e-12 | 67.4 |
| MS.gene85513.t1 | AT5G61160 | 29.282 | 181 | 118 | 4 | 5 | 182 | 3 | 176 | 7.52e-18 | 84.0 |
| MS.gene85513.t1 | AT5G39050 | 32.000 | 175 | 112 | 3 | 1 | 174 | 6 | 174 | 3.50e-17 | 82.0 |
| MS.gene85513.t1 | AT3G29635 | 31.694 | 183 | 114 | 4 | 5 | 182 | 3 | 179 | 4.21e-17 | 81.6 |
| MS.gene85513.t1 | AT3G29590 | 27.869 | 183 | 118 | 4 | 2 | 182 | 5 | 175 | 1.07e-16 | 80.5 |
Find 61 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATACTTGGTGTTGGAATTA+AGG | 0.167755 | 3.4:+12094532 | None:intergenic |
| TTCTATTGGAATAGAAATTA+AGG | 0.170988 | 3.4:-12093853 | MS.gene85513:CDS |
| GTTTGATTGATCCAATAAAA+AGG | 0.249772 | 3.4:-12093830 | MS.gene85513:CDS |
| TGTGAAGCAGTTAATTCTAT+TGG | 0.291099 | 3.4:-12093867 | MS.gene85513:CDS |
| TATCTCTAAGTTGAGCTTCT+AGG | 0.296611 | 3.4:+12093556 | None:intergenic |
| ACTTCCAAAGAGGAAGTTAT+TGG | 0.300492 | 3.4:-12093904 | MS.gene85513:CDS |
| ATACTTGGTGTTGGAATTAA+GGG | 0.318205 | 3.4:+12094533 | None:intergenic |
| CAAATTGAGAGTCCTGAGTT+TGG | 0.319101 | 3.4:+12094455 | None:intergenic |
| TCTCCCAATAACTTCCTCTT+TGG | 0.322116 | 3.4:+12093900 | None:intergenic |
| AATGTGTATGAAACTAATTT+TGG | 0.344845 | 3.4:-12093720 | MS.gene85513:CDS |
| TCTATTGGAATAGAAATTAA+GGG | 0.350626 | 3.4:-12093852 | MS.gene85513:CDS |
| TGAGTTACCTTGACCTTCCT+TGG | 0.350915 | 3.4:-12094841 | MS.gene85513:CDS |
| TGAAGTTGGGATGGTGTTAG+AGG | 0.372013 | 3.4:-12093607 | MS.gene85513:CDS |
| GAGGTGGTTGAAGTTTGATT+TGG | 0.385138 | 3.4:+12094601 | None:intergenic |
| CCTTGAGAGTAGAGAATGTA+AGG | 0.406086 | 3.4:+12094653 | None:intergenic |
| TGAAGAATTTCACTCAAAAC+AGG | 0.418130 | 3.4:+12093687 | None:intergenic |
| GAAGATCATGGCATTGAAGT+TGG | 0.433604 | 3.4:-12093621 | MS.gene85513:CDS |
| CTTCCAAAGAGGAAGTTATT+GGG | 0.437547 | 3.4:-12093903 | MS.gene85513:CDS |
| GTGATTTGAATCACCAATGT+TGG | 0.444110 | 3.4:+12094485 | None:intergenic |
| GGATTGGGAGTGAAGTTTGA+AGG | 0.457749 | 3.4:+12094756 | None:intergenic |
| AGGAAGTTATTGGGAGAGAA+TGG | 0.458911 | 3.4:-12093894 | MS.gene85513:CDS |
| GTTTCATACACATTAAACTT+TGG | 0.462228 | 3.4:+12093729 | None:intergenic |
| AATGGAATTGTCATTGAAGA+TGG | 0.464584 | 3.4:+12094863 | None:intergenic |
| TGATTTGAATCACCAATGTT+GGG | 0.476013 | 3.4:+12094486 | None:intergenic |
| TTTACAACGTGTTAGGGACT+TGG | 0.477710 | 3.4:-12093790 | MS.gene85513:CDS |
| GTTGGAATTAAGGGAGCAAA+AGG | 0.485582 | 3.4:+12094542 | None:intergenic |
| CACATTATCGTTCCCAACAT+TGG | 0.485972 | 3.4:-12094498 | MS.gene85513:CDS |
| AGCTCAACTTAGAGATATTG+TGG | 0.487736 | 3.4:-12093550 | MS.gene85513:CDS |
| GGGAGCAAAAGGGTATGAAA+TGG | 0.498183 | 3.4:+12094553 | None:intergenic |
| TCTTGTAAAATACTTGGTGT+TGG | 0.498501 | 3.4:+12094524 | None:intergenic |
| AAAACGGTCTTAGAAGAGAA+AGG | 0.500425 | 3.4:+12094695 | None:intergenic |
| GGAAGAAATGTTGAAGAGTG+AGG | 0.509877 | 3.4:+12094717 | None:intergenic |
| AAGATCATGGCATTGAAGTT+GGG | 0.519789 | 3.4:-12093620 | MS.gene85513:CDS |
| GGAAGTGTTGTGTGGAATGA+GGG | 0.523915 | 3.4:+12094777 | None:intergenic |
| TTCACATATTGTAAATGAGA+TGG | 0.543340 | 3.4:+12094625 | None:intergenic |
| GAAGAAATGTTGAAGAGTGA+GGG | 0.543468 | 3.4:+12094718 | None:intergenic |
| GACCTTCACCTCATCATCCA+TGG | 0.543743 | 3.4:+12094925 | None:intergenic |
| GGAAGGTCAAGGTAACTCAA+TGG | 0.558350 | 3.4:+12094845 | None:intergenic |
| AGTTCTAAAGATGAAGATCA+TGG | 0.559685 | 3.4:-12093633 | MS.gene85513:CDS |
| CCTTACATTCTCTACTCTCA+AGG | 0.561559 | 3.4:-12094653 | MS.gene85513:CDS |
| AGGAAGTGTTGTGTGGAATG+AGG | 0.565042 | 3.4:+12094776 | None:intergenic |
| TTCAGACATGAAATTGCTGA+TGG | 0.574244 | 3.4:-12094425 | MS.gene85513:intron |
| GTGCCATCTTGTAAAATACT+TGG | 0.580654 | 3.4:+12094518 | None:intergenic |
| GCTCAACTTAGAGATATTGT+GGG | 0.589932 | 3.4:-12093549 | MS.gene85513:CDS |
| AAACGGTCTTAGAAGAGAAA+GGG | 0.590401 | 3.4:+12094696 | None:intergenic |
| GTGTTGCAGCACTTCCAAAG+AGG | 0.597588 | 3.4:-12093914 | MS.gene85513:CDS |
| TTTGAGTGAAATTCTTCATG+TGG | 0.605496 | 3.4:-12093682 | MS.gene85513:CDS |
| TTCCATGGATGATGAGGTGA+AGG | 0.614666 | 3.4:-12094927 | None:intergenic |
| ATATAGGGGCAGCGAAACCA+AGG | 0.617092 | 3.4:+12094824 | None:intergenic |
| GTTTGTTTCCATGGATGATG+AGG | 0.625236 | 3.4:-12094933 | None:intergenic |
| CTTGAGAGTAGAGAATGTAA+GGG | 0.628790 | 3.4:+12094654 | None:intergenic |
| TTGGAATTAAGGGAGCAAAA+GGG | 0.633642 | 3.4:+12094543 | None:intergenic |
| TTGAGAGTAGAGAATGTAAG+GGG | 0.640091 | 3.4:+12094655 | None:intergenic |
| AGCGAAACCAAGGAAGGTCA+AGG | 0.643787 | 3.4:+12094834 | None:intergenic |
| AGGGGCAGCGAAACCAAGGA+AGG | 0.648670 | 3.4:+12094828 | None:intergenic |
| TCATGGCATTGAAGTTGGGA+TGG | 0.653838 | 3.4:-12093616 | MS.gene85513:CDS |
| AGTTTGAAGGAAGTGTTGTG+TGG | 0.667174 | 3.4:+12094769 | None:intergenic |
| TTAGTGAATTGGAAATGAGG+TGG | 0.669693 | 3.4:+12094585 | None:intergenic |
| TGTCAAGTGAGTCCTCCACA+AGG | 0.675070 | 3.4:-12094893 | MS.gene85513:CDS |
| GATGGAAGAGAACCTTGTGG+AGG | 0.684993 | 3.4:+12094881 | None:intergenic |
| GAAGATGGAAGAGAACCTTG+TGG | 0.732063 | 3.4:+12094878 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACTTTGTTTAAGATTTTT+TGG | + | chr3.4:12094169-12094188 | None:intergenic | 15.0% |
| !!! | AACTTTGTTTAAGATTTTTT+GGG | + | chr3.4:12094168-12094187 | None:intergenic | 15.0% |
| !!! | AATGATTTTGAAGATAATTA+TGG | - | chr3.4:12094451-12094470 | MS.gene85513:CDS | 15.0% |
| !!! | AATTATTTTGGAAATTGTTT+AGG | - | chr3.4:12094520-12094539 | MS.gene85513:CDS | 15.0% |
| !!! | TAGTAAATTCTTTTCATATA+GGG | + | chr3.4:12093656-12093675 | None:intergenic | 15.0% |
| !!! | TTTGAAAATATAACTTTTGT+TGG | - | chr3.4:12094703-12094722 | MS.gene85513:CDS | 15.0% |
| !! | AAGTGGAAAAATTGAAAAAA+TGG | - | chr3.4:12094284-12094303 | MS.gene85513:intron | 20.0% |
| !! | GTTACAAAAAGTAAAACTAT+TGG | - | chr3.4:12094310-12094329 | MS.gene85513:intron | 20.0% |
| !! | TCTATTGGAATAGAAATTAA+GGG | - | chr3.4:12094610-12094629 | MS.gene85513:CDS | 20.0% |
| !! | TTCATCATTTCATGAAATAT+TGG | - | chr3.4:12094068-12094087 | MS.gene85513:intron | 20.0% |
| !! | TTCTATTGGAATAGAAATTA+AGG | - | chr3.4:12094609-12094628 | MS.gene85513:CDS | 20.0% |
| !! | TTTGATTGATCCAATAAAAA+GGG | - | chr3.4:12094633-12094652 | MS.gene85513:CDS | 20.0% |
| !!! | AATGTGTATGAAACTAATTT+TGG | - | chr3.4:12094742-12094761 | MS.gene85513:CDS | 20.0% |
| !!! | AATTTGTTGAAATCTCAAAA+TGG | + | chr3.4:12094504-12094523 | None:intergenic | 20.0% |
| !!! | AGTAAATTCTTTTCATATAG+GGG | + | chr3.4:12093655-12093674 | None:intergenic | 20.0% |
| !!! | ATTTTTTCAATTTTTCCACT+TGG | + | chr3.4:12094285-12094304 | None:intergenic | 20.0% |
| !!! | GAGATTTCAACAAATTATTT+TGG | - | chr3.4:12094508-12094527 | MS.gene85513:CDS | 20.0% |
| !!! | GTAGTAAATTCTTTTCATAT+AGG | + | chr3.4:12093657-12093676 | None:intergenic | 20.0% |
| !!! | TTATGGTTTTAGAGTTTTAA+TGG | - | chr3.4:12094468-12094487 | MS.gene85513:CDS | 20.0% |
| ! | AAAGTTTCTTAGAACAACTT+TGG | - | chr3.4:12094182-12094201 | MS.gene85513:intron | 25.0% |
| ! | ATAATGTCTCTATTGTGTAA+TGG | + | chr3.4:12094139-12094158 | None:intergenic | 25.0% |
| ! | GTTTCATACACATTAAACTT+TGG | + | chr3.4:12094736-12094755 | None:intergenic | 25.0% |
| ! | GTTTGATTGATCCAATAAAA+AGG | - | chr3.4:12094632-12094651 | MS.gene85513:CDS | 25.0% |
| ! | TTCACATATTGTAAATGAGA+TGG | + | chr3.4:12093840-12093859 | None:intergenic | 25.0% |
| !! | CTAGTAGATTCTATTGTTTT+TGG | + | chr3.4:12094217-12094236 | None:intergenic | 25.0% |
| !! | GAAAATATAACTTTTGTTGG+AGG | - | chr3.4:12094706-12094725 | MS.gene85513:CDS | 25.0% |
| !! | GTATGAAACTAATTTTGGAT+GGG | - | chr3.4:12094747-12094766 | MS.gene85513:CDS | 25.0% |
| !! | TATGAAACTAATTTTGGATG+GGG | - | chr3.4:12094748-12094767 | MS.gene85513:CDS | 25.0% |
| !! | TGTATGAAACTAATTTTGGA+TGG | - | chr3.4:12094746-12094765 | MS.gene85513:CDS | 25.0% |
| !!! | TATGTTTTTACAACGTGTTA+GGG | - | chr3.4:12094666-12094685 | MS.gene85513:CDS | 25.0% |
| !!! | TGTTACATGTTCTTTGTTTT+GGG | - | chr3.4:12094363-12094382 | MS.gene85513:intron | 25.0% |
| !!! | TTATGTTTTTACAACGTGTT+AGG | - | chr3.4:12094665-12094684 | MS.gene85513:CDS | 25.0% |
| AATGGAATTGTCATTGAAGA+TGG | + | chr3.4:12093602-12093621 | None:intergenic | 30.0% | |
| TAAGTTTCCACTTGAAAGTA+AGG | + | chr3.4:12094095-12094114 | None:intergenic | 30.0% | |
| TATATTAACACATCACCAAG+TGG | - | chr3.4:12094267-12094286 | MS.gene85513:intron | 30.0% | |
| TGAAGAATTTCACTCAAAAC+AGG | + | chr3.4:12094778-12094797 | None:intergenic | 30.0% | |
| TGATTTGAATCACCAATGTT+GGG | + | chr3.4:12093979-12093998 | None:intergenic | 30.0% | |
| TGTGAAGCAGTTAATTCTAT+TGG | - | chr3.4:12094595-12094614 | MS.gene85513:CDS | 30.0% | |
| TTTGAGTGAAATTCTTCATG+TGG | - | chr3.4:12094780-12094799 | MS.gene85513:CDS | 30.0% | |
| ! | ACACCAAGTATTTTACAAGA+TGG | - | chr3.4:12093941-12093960 | MS.gene85513:intron | 30.0% |
| ! | AGATCTTCAACCCTTTTTAT+TGG | + | chr3.4:12094646-12094665 | None:intergenic | 30.0% |
| ! | ATGAAACTAATTTTGGATGG+GGG | - | chr3.4:12094749-12094768 | MS.gene85513:CDS | 30.0% |
| ! | CTTTTAGTGAATTGGAAATG+AGG | + | chr3.4:12093883-12093902 | None:intergenic | 30.0% |
| !! | AAAGAGAGTTTTTGAGGATT+GGG | + | chr3.4:12093724-12093743 | None:intergenic | 30.0% |
| !! | AATACTTGGTGTTGGAATTA+AGG | + | chr3.4:12093933-12093952 | None:intergenic | 30.0% |
| !! | AGTTCTAAAGATGAAGATCA+TGG | - | chr3.4:12094829-12094848 | MS.gene85513:CDS | 30.0% |
| !! | ATACTTGGTGTTGGAATTAA+GGG | + | chr3.4:12093932-12093951 | None:intergenic | 30.0% |
| !! | CTGTTACATGTTCTTTGTTT+TGG | - | chr3.4:12094362-12094381 | MS.gene85513:intron | 30.0% |
| !! | TCTTGTAAAATACTTGGTGT+TGG | + | chr3.4:12093941-12093960 | None:intergenic | 30.0% |
| !!! | GTAGATTCTATTGTTTTTGG+TGG | + | chr3.4:12094214-12094233 | None:intergenic | 30.0% |
| !!! | TTCTTTGTTTTGGGTATGTA+AGG | - | chr3.4:12094372-12094391 | MS.gene85513:intron | 30.0% |
| !!! | TTTTGGTTTAGGAGGAAAAA+CGG | + | chr3.4:12093786-12093805 | None:intergenic | 30.0% |
| AAAACGGTCTTAGAAGAGAA+AGG | + | chr3.4:12093770-12093789 | None:intergenic | 35.0% | |
| AAACGGTCTTAGAAGAGAAA+GGG | + | chr3.4:12093769-12093788 | None:intergenic | 35.0% | |
| ACTTCCAAAGAGGAAGTTAT+TGG | - | chr3.4:12094558-12094577 | MS.gene85513:CDS | 35.0% | |
| AGCTCAACTTAGAGATATTG+TGG | - | chr3.4:12094912-12094931 | MS.gene85513:CDS | 35.0% | |
| CAAAGAACATGTAACAGCAA+AGG | + | chr3.4:12094359-12094378 | None:intergenic | 35.0% | |
| CTTCCAAAGAGGAAGTTATT+GGG | - | chr3.4:12094559-12094578 | MS.gene85513:CDS | 35.0% | |
| CTTGAGAGTAGAGAATGTAA+GGG | + | chr3.4:12093811-12093830 | None:intergenic | 35.0% | |
| GAAGAAATGTTGAAGAGTGA+GGG | + | chr3.4:12093747-12093766 | None:intergenic | 35.0% | |
| GCTCAACTTAGAGATATTGT+GGG | - | chr3.4:12094913-12094932 | MS.gene85513:CDS | 35.0% | |
| GTGATTTGAATCACCAATGT+TGG | + | chr3.4:12093980-12093999 | None:intergenic | 35.0% | |
| GTGCCATCTTGTAAAATACT+TGG | + | chr3.4:12093947-12093966 | None:intergenic | 35.0% | |
| TACTAGTAGCAACAACAACA+TGG | - | chr3.4:12094231-12094250 | MS.gene85513:intron | 35.0% | |
| TATTGGTCCTTACTTTCAAG+TGG | - | chr3.4:12094085-12094104 | MS.gene85513:intron | 35.0% | |
| TTAGTGAATTGGAAATGAGG+TGG | + | chr3.4:12093880-12093899 | None:intergenic | 35.0% | |
| TTCAGACATGAAATTGCTGA+TGG | - | chr3.4:12094037-12094056 | MS.gene85513:intron | 35.0% | |
| TTGAGAGTAGAGAATGTAAG+GGG | + | chr3.4:12093810-12093829 | None:intergenic | 35.0% | |
| TTGGAATTAAGGGAGCAAAA+GGG | + | chr3.4:12093922-12093941 | None:intergenic | 35.0% | |
| ! | AAGATCATGGCATTGAAGTT+GGG | - | chr3.4:12094842-12094861 | MS.gene85513:CDS | 35.0% |
| ! | ATCACTCTTTTTCCAAACTC+AGG | - | chr3.4:12093995-12094014 | MS.gene85513:intron | 35.0% |
| ! | GGCAAGATCTTTTAGTGAAT+TGG | + | chr3.4:12093891-12093910 | None:intergenic | 35.0% |
| ! | TAGAGAATGTAAGGGGTTTT+TGG | + | chr3.4:12093803-12093822 | None:intergenic | 35.0% |
| ! | TATCTCTAAGTTGAGCTTCT+AGG | + | chr3.4:12094909-12094928 | None:intergenic | 35.0% |
| !! | GAAAGAGAGTTTTTGAGGAT+TGG | + | chr3.4:12093725-12093744 | None:intergenic | 35.0% |
| !!! | ATGTAAGGGGTTTTTGGTTT+AGG | + | chr3.4:12093797-12093816 | None:intergenic | 35.0% |
| AGGAAGTTATTGGGAGAGAA+TGG | - | chr3.4:12094568-12094587 | MS.gene85513:CDS | 40.0% | |
| CAAATTGAGAGTCCTGAGTT+TGG | + | chr3.4:12094010-12094029 | None:intergenic | 40.0% | |
| CACATTATCGTTCCCAACAT+TGG | - | chr3.4:12093964-12093983 | MS.gene85513:intron | 40.0% | |
| CCTTACATTCTCTACTCTCA+AGG | - | chr3.4:12093809-12093828 | MS.gene85513:CDS | 40.0% | |
| CCTTGAGAGTAGAGAATGTA+AGG | + | chr3.4:12093812-12093831 | None:intergenic | 40.0% | |
| GAGGTGGTTGAAGTTTGATT+TGG | + | chr3.4:12093864-12093883 | None:intergenic | 40.0% | |
| GGAAGAAATGTTGAAGAGTG+AGG | + | chr3.4:12093748-12093767 | None:intergenic | 40.0% | |
| GTTGGAATTAAGGGAGCAAA+AGG | + | chr3.4:12093923-12093942 | None:intergenic | 40.0% | |
| TCTCCCAATAACTTCCTCTT+TGG | + | chr3.4:12094565-12094584 | None:intergenic | 40.0% | |
| TTTACAACGTGTTAGGGACT+TGG | - | chr3.4:12094672-12094691 | MS.gene85513:CDS | 40.0% | |
| ! | GAAGATCATGGCATTGAAGT+TGG | - | chr3.4:12094841-12094860 | MS.gene85513:CDS | 40.0% |
| ! | TGAGGGAAAGAGAGTTTTTG+AGG | + | chr3.4:12093730-12093749 | None:intergenic | 40.0% |
| !! | AGTTTGAAGGAAGTGTTGTG+TGG | + | chr3.4:12093696-12093715 | None:intergenic | 40.0% |
| !!! | TAAGGGGTTTTTGGTTTAGG+AGG | + | chr3.4:12093794-12093813 | None:intergenic | 40.0% |
| GAAGATGGAAGAGAACCTTG+TGG | + | chr3.4:12093587-12093606 | None:intergenic | 45.0% | |
| GGAAGGTCAAGGTAACTCAA+TGG | + | chr3.4:12093620-12093639 | None:intergenic | 45.0% | |
| GGATTGGGAGTGAAGTTTGA+AGG | + | chr3.4:12093709-12093728 | None:intergenic | 45.0% | |
| TGAGTTACCTTGACCTTCCT+TGG | - | chr3.4:12093621-12093640 | MS.gene85513:CDS | 45.0% | |
| ! | GGGAGCAAAAGGGTATGAAA+TGG | + | chr3.4:12093912-12093931 | None:intergenic | 45.0% |
| ! | TCATGGCATTGAAGTTGGGA+TGG | - | chr3.4:12094846-12094865 | MS.gene85513:CDS | 45.0% |
| ! | TGAAGTTGGGATGGTGTTAG+AGG | - | chr3.4:12094855-12094874 | MS.gene85513:CDS | 45.0% |
| !! | AGGAAGTGTTGTGTGGAATG+AGG | + | chr3.4:12093689-12093708 | None:intergenic | 45.0% |
| !! | GGAAGTGTTGTGTGGAATGA+GGG | + | chr3.4:12093688-12093707 | None:intergenic | 45.0% |
| AGCGAAACCAAGGAAGGTCA+AGG | + | chr3.4:12093631-12093650 | None:intergenic | 50.0% | |
| ATATAGGGGCAGCGAAACCA+AGG | + | chr3.4:12093641-12093660 | None:intergenic | 50.0% | |
| GATGGAAGAGAACCTTGTGG+AGG | + | chr3.4:12093584-12093603 | None:intergenic | 50.0% | |
| GTGTTGCAGCACTTCCAAAG+AGG | - | chr3.4:12094548-12094567 | MS.gene85513:CDS | 50.0% | |
| TGTCAAGTGAGTCCTCCACA+AGG | - | chr3.4:12093569-12093588 | MS.gene85513:CDS | 50.0% | |
| AGGGGCAGCGAAACCAAGGA+AGG | + | chr3.4:12093637-12093656 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 12093539 | 12094945 | 12093539 | ID=MS.gene85513 |
| chr3.4 | mRNA | 12093539 | 12094945 | 12093539 | ID=MS.gene85513.t1;Parent=MS.gene85513 |
| chr3.4 | exon | 12094426 | 12094945 | 12094426 | ID=MS.gene85513.t1.exon1;Parent=MS.gene85513.t1 |
| chr3.4 | CDS | 12094426 | 12094945 | 12094426 | ID=cds.MS.gene85513.t1;Parent=MS.gene85513.t1 |
| chr3.4 | exon | 12093539 | 12093942 | 12093539 | ID=MS.gene85513.t1.exon2;Parent=MS.gene85513.t1 |
| chr3.4 | CDS | 12093539 | 12093942 | 12093539 | ID=cds.MS.gene85513.t1;Parent=MS.gene85513.t1 |
| Gene Sequence |
| Protein sequence |
