AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene85957

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85957.t1 MTR_2g104960 97.076 342 9 1 1 341 1 342 0.0 682
MS.gene85957.t1 MTR_4g006940 80.781 333 61 2 7 336 3 335 0.0 545
MS.gene85957.t1 MTR_4g006940 81.655 278 49 1 7 282 3 280 1.71e-163 457
MS.gene85957.t1 MTR_4g006940 81.655 278 49 1 7 282 3 280 1.71e-163 457
MS.gene85957.t1 MTR_3g005210 46.605 324 164 6 14 330 1 322 2.15e-99 296
MS.gene85957.t1 MTR_3g005170 48.137 322 158 6 11 325 2 321 3.95e-99 296
MS.gene85957.t1 MTR_4g009040 46.708 319 161 3 15 328 9 323 1.75e-95 286
MS.gene85957.t1 MTR_5g072620 45.141 319 168 3 17 329 3 320 3.25e-95 286
MS.gene85957.t1 MTR_4g009040 46.130 323 161 3 15 328 9 327 8.34e-95 285
MS.gene85957.t1 MTR_4g077100 47.319 317 158 6 16 325 8 322 9.84e-93 280
MS.gene85957.t1 MTR_4g077130 46.417 321 163 7 12 325 2 320 2.54e-91 276
MS.gene85957.t1 MTR_8g062440 45.652 322 165 7 16 330 5 323 5.42e-89 270
MS.gene85957.t1 MTR_4g009690 47.022 319 160 3 15 328 9 323 2.34e-88 268
MS.gene85957.t1 MTR_4g009690 47.335 319 158 4 15 328 9 322 8.70e-88 267
MS.gene85957.t1 MTR_3g005170 48.746 279 135 5 11 282 2 279 6.11e-87 263
MS.gene85957.t1 MTR_8g062440 45.511 323 165 8 16 330 5 324 6.34e-87 265
MS.gene85957.t1 MTR_3g031650 43.354 316 172 3 17 326 3 317 9.84e-87 264
MS.gene85957.t1 MTR_8g062110 45.741 317 162 6 16 325 15 328 1.46e-86 264
MS.gene85957.t1 MTR_8g062110 45.741 317 162 6 16 325 6 319 1.51e-86 264
MS.gene85957.t1 MTR_5g056600 43.711 318 169 7 19 328 4 319 3.95e-86 263
MS.gene85957.t1 MTR_3g005170 44.025 318 146 6 11 325 2 290 8.40e-84 256
MS.gene85957.t1 MTR_4g077100 48.540 274 133 5 16 282 8 280 1.47e-81 249
MS.gene85957.t1 MTR_1g022440 41.846 325 171 12 17 328 6 325 8.06e-79 244
MS.gene85957.t1 MTR_3g031650 44.981 269 142 2 17 279 3 271 2.84e-78 241
MS.gene85957.t1 MTR_8g062440 47.826 276 135 6 16 284 5 278 1.24e-77 241
MS.gene85957.t1 MTR_2g028620 41.925 322 174 6 17 328 8 326 2.44e-77 240
MS.gene85957.t1 MTR_8g062110 47.080 274 136 6 16 282 6 277 1.22e-76 237
MS.gene85957.t1 MTR_2g101330 40.439 319 179 5 19 329 5 320 1.33e-76 238
MS.gene85957.t1 MTR_8g062110 47.080 274 136 5 16 282 6 277 1.38e-76 237
MS.gene85957.t1 MTR_1g022445 41.667 324 175 10 16 328 5 325 6.64e-76 237
MS.gene85957.t1 MTR_2g028620 43.223 273 143 5 17 279 8 278 3.26e-67 214
MS.gene85957.t1 MTR_4g092080 36.391 338 194 10 7 326 2 336 9.83e-57 187
MS.gene85957.t1 MTR_7g074730 36.615 325 187 13 19 328 8 328 3.51e-56 186
MS.gene85957.t1 MTR_7g074880 34.769 325 191 11 19 328 8 326 4.99e-56 185
MS.gene85957.t1 MTR_7g074820 36.810 326 186 13 19 328 8 329 5.80e-55 182
MS.gene85957.t1 MTR_4g081440 35.329 334 186 10 20 328 21 349 9.81e-52 175
MS.gene85957.t1 MTR_4g081440 35.821 335 184 11 20 328 25 354 9.89e-52 175
MS.gene85957.t1 MTR_7g074850 34.347 329 190 13 19 328 8 329 3.34e-51 173
MS.gene85957.t1 MTR_8g062110 41.071 224 127 4 104 325 13 233 1.19e-49 166
MS.gene85957.t1 MTR_7g074710 34.056 323 196 13 19 328 8 326 1.90e-46 160
MS.gene85957.t1 MTR_4g023730 33.231 325 201 10 18 328 7 329 9.20e-44 153
MS.gene85957.t1 MTR_5g029990 31.596 307 191 8 9 308 2 296 8.52e-42 147
MS.gene85957.t1 MTR_8g062110 41.989 181 101 3 104 282 13 191 6.99e-40 139
MS.gene85957.t1 MTR_7g074870 33.216 283 172 10 58 328 11 288 6.99e-40 142
MS.gene85957.t1 MTR_6g406250 32.653 294 183 6 19 301 55 344 1.59e-39 143
MS.gene85957.t1 MTR_0685s0030 43.750 160 88 2 166 325 2 159 4.21e-37 131
MS.gene85957.t1 MTR_2g013250 29.825 342 203 11 19 330 7 341 3.40e-33 125
MS.gene85957.t1 MTR_2g013230 28.655 342 207 11 19 330 8 342 1.33e-29 116
MS.gene85957.t1 MTR_7g117190 29.245 318 192 12 19 308 7 319 2.13e-29 115
MS.gene85957.t1 MTR_7g117190 30.104 289 172 11 19 279 7 293 6.81e-29 114
MS.gene85957.t1 MTR_6g406250 33.173 208 126 5 19 215 55 260 3.12e-27 108
MS.gene85957.t1 MTR_0164s0070 43.262 141 61 4 19 140 5 145 5.86e-27 105
MS.gene85957.t1 MTR_0685s0030 45.299 117 63 1 166 282 2 117 4.26e-26 100
MS.gene85957.t1 MTR_2g013260 28.261 322 189 11 19 308 8 319 1.60e-25 105
MS.gene85957.t1 MTR_2g013260 28.716 296 172 10 19 282 8 296 6.37e-25 102
MS.gene85957.t1 MTR_8g062710 46.067 89 34 2 19 103 20 98 8.92e-17 75.9
MS.gene85957.t1 MTR_3g011130 38.889 108 63 3 110 214 35 142 2.60e-16 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85957.t1 AT1G15950 77.358 318 72 0 12 329 6 323 1.74e-179 501
MS.gene85957.t1 AT1G15950 77.358 318 72 0 12 329 6 323 1.74e-179 501
MS.gene85957.t1 AT1G80820 72.393 326 90 0 14 339 3 328 1.92e-174 487
MS.gene85957.t1 AT1G15950 77.524 307 69 0 12 318 6 312 5.55e-172 481
MS.gene85957.t1 AT1G15950 79.336 271 56 0 12 282 6 276 5.69e-152 428
MS.gene85957.t1 AT1G15950 78.545 275 59 0 12 286 6 280 7.62e-152 429
MS.gene85957.t1 AT1G15950 79.259 270 56 0 12 281 6 275 3.94e-151 426
MS.gene85957.t1 AT1G80820 75.093 269 67 0 14 282 3 271 5.38e-145 410
MS.gene85957.t1 AT1G15950 80.444 225 44 0 105 329 1 225 7.21e-124 356
MS.gene85957.t1 AT5G19440 48.916 323 156 6 11 326 2 322 1.07e-103 308
MS.gene85957.t1 AT1G51410 46.319 326 166 6 12 330 2 325 8.57e-95 285
MS.gene85957.t1 AT5G58490 46.082 319 165 3 17 329 7 324 1.94e-93 281
MS.gene85957.t1 AT2G02400 43.614 321 172 4 14 328 1 318 1.33e-90 274
MS.gene85957.t1 AT2G33590 47.910 311 152 5 19 323 9 315 2.09e-88 268
MS.gene85957.t1 AT1G09510 45.768 319 160 7 16 325 5 319 1.44e-86 264
MS.gene85957.t1 AT1G66800 47.205 322 147 10 16 325 5 315 1.14e-84 259
MS.gene85957.t1 AT1G09490 43.925 321 169 7 16 328 5 322 9.69e-83 254
MS.gene85957.t1 AT1G09480 43.827 324 165 8 16 328 5 322 1.84e-82 253
MS.gene85957.t1 AT4G35420 42.767 318 172 7 19 329 8 322 4.29e-82 253
MS.gene85957.t1 AT1G09480 43.827 324 165 8 16 328 52 369 4.36e-82 254
MS.gene85957.t1 AT1G68540 42.271 317 173 5 21 328 6 321 1.41e-81 251
MS.gene85957.t1 AT1G09500 43.034 323 166 8 16 325 5 322 5.19e-77 239
MS.gene85957.t1 AT1G76470 41.875 320 176 3 17 328 5 322 4.61e-75 234
MS.gene85957.t1 AT1G25460 40.317 315 180 4 21 328 6 319 3.85e-74 232
MS.gene85957.t1 AT2G33600 44.695 311 162 5 19 323 9 315 1.01e-72 228
MS.gene85957.t1 AT1G09500 45.290 276 134 7 16 279 5 275 3.46e-72 225
MS.gene85957.t1 AT5G42800 40.356 337 186 12 17 341 6 339 1.44e-70 224
MS.gene85957.t1 AT1G09490 41.404 285 157 6 51 328 10 291 1.17e-64 206
MS.gene85957.t1 AT1G09500 40.767 287 153 7 51 325 7 288 1.18e-58 191
MS.gene85957.t1 AT2G45400 36.086 327 190 10 19 328 40 364 8.34e-54 181
MS.gene85957.t1 AT4G27250 35.849 318 173 10 18 308 12 325 6.96e-53 178
MS.gene85957.t1 AT4G27250 36.129 310 173 10 18 308 12 315 1.70e-51 174
MS.gene85957.t1 AT2G45400 37.050 278 160 7 19 281 40 317 1.97e-49 168
MS.gene85957.t1 AT1G68540 38.389 211 128 2 119 328 5 214 1.65e-48 162
MS.gene85957.t1 AT2G23910 34.448 299 170 8 20 304 11 297 2.19e-48 165
MS.gene85957.t1 AT2G23910 34.783 276 155 7 20 282 11 274 2.23e-47 161
MS.gene85957.t1 AT1G61720 31.385 325 202 10 20 326 14 335 2.33e-47 163
MS.gene85957.t1 AT2G23910 35.036 274 153 7 20 280 11 272 3.00e-47 161
MS.gene85957.t1 AT4G30470 33.333 297 185 6 15 304 6 296 4.72e-43 151
MS.gene85957.t1 AT2G23910 35.000 260 144 7 58 304 16 263 1.62e-40 143
MS.gene85957.t1 AT2G45400 34.084 311 186 10 33 328 1 307 5.25e-40 143
MS.gene85957.t1 AT5G14700 33.333 309 176 11 19 304 55 356 2.58e-37 137
MS.gene85957.t1 AT2G45400 36.574 216 123 6 19 220 40 255 3.25e-33 124
MS.gene85957.t1 AT5G14700 35.455 220 122 7 19 223 55 269 2.28e-28 112
MS.gene85957.t1 AT4G33360 28.455 246 149 8 19 255 15 242 1.03e-18 85.5
MS.gene85957.t1 AT4G33360 28.455 246 149 8 19 255 3 230 1.13e-18 85.9
MS.gene85957.t1 AT4G33360 28.455 246 149 8 19 255 15 242 1.35e-18 85.9

Find 81 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGGTGGCTTCATCGCTTCT+TGG 0.240471 2.1:-1043930 MS.gene85957:CDS
GCAGAATCTTCCTCAATTTC+CGG 0.262911 2.1:-1043976 MS.gene85957:CDS
CTCAACATCAACACTCCTAT+TGG 0.285572 2.1:+1042244 None:intergenic
TATGAGAAACCTTCTGCTTC+TGG 0.292884 2.1:-1041362 MS.gene85957:CDS
GTGACTTACTTGGTAGGAAT+TGG 0.293032 2.1:+1041263 None:intergenic
ATCAATTGGCGCAGTCTATA+TGG 0.300091 2.1:-1042270 MS.gene85957:CDS
CACAAGCTTATGTTCATGTT+AGG 0.302408 2.1:-1041412 MS.gene85957:CDS
TCTAGAGAATCTTCTTTGTT+TGG 0.306818 2.1:+1039717 None:intergenic
TCCATTAACGGCTTCTTTAA+CGG 0.328595 2.1:+1043419 None:intergenic
TCCGTTAAAGAAGCCGTTAA+TGG 0.331782 2.1:-1043420 MS.gene85957:CDS
TCAACATCAACACTCCTATT+GGG 0.340370 2.1:+1042245 None:intergenic
GGTCGTAGTGAATCCAGTTT+TGG 0.346494 2.1:-1041528 MS.gene85957:CDS
TTCTTTGCTCCATTCACTGC+TGG 0.349124 2.1:+1042344 None:intergenic
ATTGTGCTTGCATTGATTGT+AGG 0.355496 2.1:+1041485 None:intergenic
AAAGGTGACCTTGGTCTTGT+AGG 0.380163 2.1:+1039745 None:intergenic
TTGAGGTTGATGAGTCTTGC+TGG 0.381677 2.1:-1042226 MS.gene85957:CDS
TGAGTCTTGCTGGAGTGATT+TGG 0.392451 2.1:-1042216 MS.gene85957:CDS
GAGAAAGGCTATACTGTTAG+AGG 0.399644 2.1:-1043889 MS.gene85957:CDS
AAAAGAGAAAGGAGTGGATT+TGG 0.403334 2.1:-1041549 MS.gene85957:CDS
CACATACTAAAATACCTAAC+TGG 0.407793 2.1:-1041461 MS.gene85957:CDS
TTGGTCTTGTAGGCTCTTAA+CGG 0.408849 2.1:+1039755 None:intergenic
TTTGGACACACAGGAGGAAA+TGG 0.419258 2.1:-1042372 MS.gene85957:intron
TTGGATGGTTAAGCTCCTCT+TGG 0.431425 2.1:-1043911 MS.gene85957:CDS
CTTCTTTGTTTGGAATAGAA+AGG 0.435435 2.1:+1039727 None:intergenic
AGCAAAAGAAAGACTAACTT+TGG 0.443191 2.1:-1043469 MS.gene85957:CDS
CAGTCTATATGGACCCCAAT+AGG 0.445142 2.1:-1042259 MS.gene85957:CDS
AATGGTCCAAGAACCAAAAC+TGG 0.452263 2.1:+1041515 None:intergenic
GCGGCGGCGGTGGTAGCAGC+AGG 0.455436 2.1:+1043997 None:intergenic
GGAAGATTCTGCGGCGGCGG+TGG 0.458764 2.1:+1043987 None:intergenic
TGGCTTCATCGCTTCTTGGA+TGG 0.463428 2.1:-1043926 MS.gene85957:CDS
TGACTTACTTGGTAGGAATT+GGG 0.464359 2.1:+1041264 None:intergenic
AAAACTGAAGGATTTGGGAT+TGG 0.468538 2.1:-1039811 MS.gene85957:CDS
TTGTAGAATTGGTACTGCTA+TGG 0.470187 2.1:-1041608 MS.gene85957:intron
AGGTCTTAGCTGAACCAGTT+AGG 0.474482 2.1:+1041447 None:intergenic
ACAAGCTTATGTTCATGTTA+GGG 0.475300 2.1:-1041411 MS.gene85957:CDS
GACACCATGACATCCATTAA+CGG 0.478255 2.1:+1043407 None:intergenic
AAATGGGCACTTGAAAGAGT+TGG 0.499323 2.1:-1043496 MS.gene85957:CDS
ATGGTGGAGCCAGCAGTGAA+TGG 0.499409 2.1:-1042353 MS.gene85957:CDS
CTGACGGGGTTATCTGTAAC+GGG 0.499421 2.1:+1043369 None:intergenic
TTGGTAGGAATTGGGTACTC+AGG 0.501534 2.1:+1041272 None:intergenic
AGCGATGAAGCCACCGGCGC+CGG 0.501975 2.1:+1043936 None:intergenic
TATGGTTTCGCCGGAAATTG+AGG 0.503195 2.1:+1043966 None:intergenic
ACCGGCGCCGGTGACACATA+TGG 0.505863 2.1:+1043948 None:intergenic
TGTAGAATTGGTACTGCTAT+GGG 0.509990 2.1:-1041607 MS.gene85957:intron
ACCATATGTGTCACCGGCGC+CGG 0.511679 2.1:-1043949 MS.gene85957:CDS
CTTTAACGGAGTTAAGATCA+AGG 0.524956 2.1:+1043433 None:intergenic
TGAGGAAGATTCTGCGGCGG+CGG 0.526567 2.1:+1043984 None:intergenic
TCATATAAACATTCACTCAC+TGG 0.528141 2.1:+1039780 None:intergenic
GTTAAGCTCCTCTTGGAGAA+AGG 0.529443 2.1:-1043904 MS.gene85957:CDS
TTATGTTCATGTTAGGGATG+TGG 0.538028 2.1:-1041405 MS.gene85957:CDS
AGTGGCTGAACAAGCAGCAT+GGG 0.546309 2.1:-1041579 MS.gene85957:CDS
ATATGTGTCACCGGCGCCGG+TGG 0.552094 2.1:-1043946 MS.gene85957:CDS
TGGGATGTGGCAAAAGAGAA+AGG 0.552893 2.1:-1041560 MS.gene85957:CDS
TTAAGAGTGACTTACTTGGT+AGG 0.563350 2.1:+1041257 None:intergenic
TGGTAGGAATTGGGTACTCA+GGG 0.564638 2.1:+1041273 None:intergenic
CAGTGGCTGAACAAGCAGCA+TGG 0.568830 2.1:-1041580 MS.gene85957:CDS
CCAAGAAGCGATGAAGCCAC+CGG 0.571020 2.1:+1043930 None:intergenic
GGCGAAACCATATGTGTCAC+CGG 0.572762 2.1:-1043955 MS.gene85957:CDS
AGCTTGTGTTGCATTTGCAT+AGG 0.575371 2.1:+1041427 None:intergenic
TTGGAATAGAAAGGTGACCT+TGG 0.582400 2.1:+1039736 None:intergenic
GAAGCCGTTAATGGATGTCA+TGG 0.583328 2.1:-1043411 MS.gene85957:CDS
ACTGACGGGGTTATCTGTAA+CGG 0.589424 2.1:+1043368 None:intergenic
CAACATCAACACTCCTATTG+GGG 0.595944 2.1:+1042246 None:intergenic
CAATAGGAGTGTTGATGTTG+AGG 0.599834 2.1:-1042243 MS.gene85957:CDS
GGTGACACATATGGTTTCGC+CGG 0.608771 2.1:+1043957 None:intergenic
TGAACAAGCAGCATGGGATG+TGG 0.613682 2.1:-1041573 MS.gene85957:CDS
CAGTATAGCCTTTCTCCAAG+AGG 0.617628 2.1:+1043896 None:intergenic
AGAGGAACCATGCGAAACCC+AGG 0.621279 2.1:-1043871 MS.gene85957:intron
GGACACACAGGAGGAAATGG+TGG 0.629666 2.1:-1042369 MS.gene85957:intron
TTGATTGTAGGTTGTAGCAA+TGG 0.640557 2.1:+1041497 None:intergenic
GAATTTCAACAAGCTCTCCA+CGG 0.644131 2.1:+1041309 None:intergenic
GGGCACTTGAAAGAGTTGGA+AGG 0.662593 2.1:-1043492 MS.gene85957:CDS
TGTGGCAAAAGAGAAAGGAG+TGG 0.662949 2.1:-1041555 MS.gene85957:CDS
AAGTATCTACCAGAAGCAGA+AGG 0.665232 2.1:+1041353 None:intergenic
GGAAATTGAGGAAGATTCTG+CGG 0.685599 2.1:+1043978 None:intergenic
AGAAGCAAAAGTGAGGCGCG+TGG 0.708286 2.1:-1042303 MS.gene85957:CDS
AATTGAGGAAGATTCTGCGG+CGG 0.716984 2.1:+1043981 None:intergenic
CTGCAGCAGAAGCAAAAGTG+AGG 0.720003 2.1:-1042310 MS.gene85957:CDS
GTTAAGAGCCTACAAGACCA+AGG 0.728061 2.1:-1039753 MS.gene85957:CDS
GCTGAAAGTTCACTTCACCG+TGG 0.785254 2.1:-1041326 MS.gene85957:CDS
GTACTGCTATGGGAAAGCAG+TGG 0.795137 2.1:-1041597 MS.gene85957:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATAATAATAATAATT+TGG - chr2.1:1043425-1043444 MS.gene85957:CDS 0.0%
!! ATAAATTTAATAATTCCTTT+AGG + chr2.1:1043648-1043667 None:intergenic 10.0%
!! ATTAAATTTATAAAATCAAG+TGG - chr2.1:1043657-1043676 MS.gene85957:intron 10.0%
!! TATTTATGTGAATTAAATTA+AGG + chr2.1:1039882-1039901 None:intergenic 10.0%
!!! ATAACATTTAACTTTTTTAA+AGG + chr2.1:1040546-1040565 None:intergenic 10.0%
!!! TAACATTTAACTTTTTTAAA+GGG + chr2.1:1040545-1040564 None:intergenic 10.0%
!!! TATTGATTTTATTCTTTTTT+TGG - chr2.1:1042508-1042527 MS.gene85957:intron 10.0%
!! AAAAAAAAAAAATGTCCTAT+TGG + chr2.1:1041580-1041599 None:intergenic 15.0%
!! AATCATACTAATATTATGAT+AGG - chr2.1:1041642-1041661 MS.gene85957:intron 15.0%
!! ATATAATATCTTAGATATGA+TGG + chr2.1:1040616-1040635 None:intergenic 15.0%
!! GAATGAAAAAAATTCAATTA+AGG + chr2.1:1040397-1040416 None:intergenic 15.0%
!! TAATTCAATGTAATTATATG+CGG + chr2.1:1040033-1040052 None:intergenic 15.0%
!! TATTCAAAAATTCAAATCAA+TGG + chr2.1:1042076-1042095 None:intergenic 15.0%
!! TCAAAAACATTTCATTTAAA+TGG + chr2.1:1042584-1042603 None:intergenic 15.0%
!!! AAATACCAATTTGATTTTAT+AGG - chr2.1:1041279-1041298 MS.gene85957:CDS 15.0%
!!! AAATTTTACTATGTATGTAT+GGG - chr2.1:1040073-1040092 MS.gene85957:intron 15.0%
!!! AAGACTATTATTTTTCTTTT+TGG + chr2.1:1040454-1040473 None:intergenic 15.0%
!!! AATTTACCATATTATTTTAG+AGG + chr2.1:1040674-1040693 None:intergenic 15.0%
!!! ATATTCTAATTGTTTTCTTA+CGG - chr2.1:1041125-1041144 MS.gene85957:intron 15.0%
!!! ATTTTTGAATATTGTAGAAT+TGG - chr2.1:1042085-1042104 MS.gene85957:intron 15.0%
!!! GTAAATTTTATCAAAAGAAA+TGG - chr2.1:1040687-1040706 MS.gene85957:intron 15.0%
!!! TAAATTTTACTATGTATGTA+TGG - chr2.1:1040072-1040091 MS.gene85957:intron 15.0%
!!! TATTATTTTTCTTTTTGGAT+TGG + chr2.1:1040449-1040468 None:intergenic 15.0%
!!! TCTATTTTTTTTTTTTTGAG+AGG + chr2.1:1040744-1040763 None:intergenic 15.0%
!!! TTTGATTTGAATTGTTAATT+TGG - chr2.1:1041314-1041333 MS.gene85957:CDS 15.0%
!!! TTTTTTTGGTATATATATCA+TGG - chr2.1:1042522-1042541 MS.gene85957:intron 15.0%
!! AAATAAAAAACTGAAGGATT+TGG - chr2.1:1043887-1043906 MS.gene85957:CDS 20.0%
!! AAATTAAATAAATGAAGGGA+AGG + chr2.1:1041544-1041563 None:intergenic 20.0%
!! AAATTAATTAAAAACTGACG+GGG + chr2.1:1040352-1040371 None:intergenic 20.0%
!! AATAAAAAACTGAAGGATTT+GGG - chr2.1:1043888-1043907 MS.gene85957:CDS 20.0%
!! AATTAAATAAATGAAGGGAA+GGG + chr2.1:1041543-1041562 None:intergenic 20.0%
!! AATTTAATAATTCCTTTAGG+TGG + chr2.1:1043645-1043664 None:intergenic 20.0%
!! ACATTTCATTTAAATGGAAA+TGG + chr2.1:1042578-1042597 None:intergenic 20.0%
!! ACTAATATTATGATAGGATT+TGG - chr2.1:1041648-1041667 MS.gene85957:intron 20.0%
!! ACTTTCCTATAAAATCAAAT+TGG + chr2.1:1041287-1041306 None:intergenic 20.0%
!! GAAATTAATTAAAAACTGAC+GGG + chr2.1:1040353-1040372 None:intergenic 20.0%
!! GGAAATTAATTAAAAACTGA+CGG + chr2.1:1040354-1040373 None:intergenic 20.0%
!!! ACATGTAGTTATACATATTT+TGG - chr2.1:1041689-1041708 MS.gene85957:intron 20.0%
!!! CAAGGATTTTGATAATATTT+TGG - chr2.1:1042739-1042758 MS.gene85957:intron 20.0%
!!! GTTTTAGTATTTTGCAATTT+TGG - chr2.1:1042631-1042650 MS.gene85957:intron 20.0%
!!! TCTTTTTAGGATAATAAATG+TGG - chr2.1:1040988-1041007 MS.gene85957:intron 20.0%
!!! TTAGATATGATGGAATTAAA+AGG + chr2.1:1040606-1040625 None:intergenic 20.0%
!!! TTTTTATTTGAGAAGATATG+TGG + chr2.1:1043876-1043895 None:intergenic 20.0%
! AAATATGAATCGATCTTGAT+TGG + chr2.1:1041719-1041738 None:intergenic 25.0%
! ATAATATGGATCCTTATAGT+AGG - chr2.1:1041859-1041878 MS.gene85957:intron 25.0%
! ATGTCATGTGATTATTTGAA+CGG - chr2.1:1040923-1040942 MS.gene85957:intron 25.0%
! ATTATGATAGGATTTGGATT+AGG - chr2.1:1041654-1041673 MS.gene85957:intron 25.0%
! CCACATAAACAAATCAAATT+TGG + chr2.1:1043608-1043627 None:intergenic 25.0%
! CTTCTCAAATAAAAAACTGA+AGG - chr2.1:1043881-1043900 MS.gene85957:CDS 25.0%
! GAAGAATAGAATAGAAATAG+AGG + chr2.1:1040375-1040394 None:intergenic 25.0%
! GATTGTGATTGAACATAATA+TGG - chr2.1:1041845-1041864 MS.gene85957:intron 25.0%
! TAACACGAAAACTAGTAAAA+GGG + chr2.1:1041152-1041171 None:intergenic 25.0%
! TAATATGGATCCTTATAGTA+GGG - chr2.1:1041860-1041879 MS.gene85957:intron 25.0%
! TACATTTAGACAACATGTAT+TGG + chr2.1:1043761-1043780 None:intergenic 25.0%
! TCTTAATACTACTCCTAATA+TGG - chr2.1:1041216-1041235 MS.gene85957:intron 25.0%
! TTAACACGAAAACTAGTAAA+AGG + chr2.1:1041153-1041172 None:intergenic 25.0%
! TTGCAAAATACTAAAACTTG+TGG + chr2.1:1042628-1042647 None:intergenic 25.0%
! TTTATTTCCTACTAACCAAT+AGG - chr2.1:1041562-1041581 MS.gene85957:CDS 25.0%
! TTTCAGATGATCCAAAAAAT+GGG - chr2.1:1040192-1040211 MS.gene85957:intron 25.0%
!! AAGAGTATGTTGAAAAGAAT+TGG - chr2.1:1043571-1043590 MS.gene85957:intron 25.0%
!! ATAACGTTGTTGATAAGATT+TGG - chr2.1:1040107-1040126 MS.gene85957:intron 25.0%
!! TTTTCAGATGATCCAAAAAA+TGG - chr2.1:1040191-1040210 MS.gene85957:intron 25.0%
!!! AATTTTGAGGCTATGATTAA+AGG + chr2.1:1043796-1043815 None:intergenic 25.0%
!!! ACATAGCCTCTAAAATAATA+TGG - chr2.1:1040665-1040684 MS.gene85957:intron 25.0%
!!! AGTAGAATATTTTTTGTACC+TGG + chr2.1:1039854-1039873 None:intergenic 25.0%
!!! ATATTATTTTAGAGGCTATG+TGG + chr2.1:1040666-1040685 None:intergenic 25.0%
!!! ATTTTTTGTAAAGAGTTTGG+TGG + chr2.1:1042052-1042071 None:intergenic 25.0%
!!! CCAAATTTGATTTGTTTATG+TGG - chr2.1:1043605-1043624 MS.gene85957:intron 25.0%
!!! CTGTTATTATATTTTGACGT+GGG - chr2.1:1040137-1040156 MS.gene85957:intron 25.0%
!!! GTAGAATATTTTTTGTACCT+GGG + chr2.1:1039853-1039872 None:intergenic 25.0%
!!! TTTTTTAAGAGTGACTTACT+TGG + chr2.1:1042454-1042473 None:intergenic 25.0%
!!! TTTTTTTGAGCAAAACCAAT+AGG - chr2.1:1041594-1041613 MS.gene85957:CDS 25.0%
AATATGGATCCTTATAGTAG+GGG - chr2.1:1041861-1041880 MS.gene85957:intron 30.0%
AATGTAATTATATGCGGCAT+CGG + chr2.1:1040027-1040046 None:intergenic 30.0%
ACAAGCTTATGTTCATGTTA+GGG - chr2.1:1042293-1042312 MS.gene85957:CDS 30.0%
ACACAAGTGCAAATATTGTA+GGG + chr2.1:1042021-1042040 None:intergenic 30.0%
ACGAAATACGTAGTATACTT+TGG + chr2.1:1042548-1042567 None:intergenic 30.0%
AGCAAAAGAAAGACTAACTT+TGG - chr2.1:1040235-1040254 MS.gene85957:intron 30.0%
AGTATGTTGAAAAGAATTGG+TGG - chr2.1:1043574-1043593 MS.gene85957:intron 30.0%
ATAATTCCTTTAGGTGGAAA+TGG + chr2.1:1043639-1043658 None:intergenic 30.0%
CACATACTAAAATACCTAAC+TGG - chr2.1:1042243-1042262 MS.gene85957:CDS 30.0%
CTTACTCTCTAATCTATCTT+AGG - chr2.1:1040471-1040490 MS.gene85957:intron 30.0%
TAAAAAGAAGCAAGCAATCA+AGG + chr2.1:1040976-1040995 None:intergenic 30.0%
TATAGTGTCATATGTCCTAT+TGG + chr2.1:1041612-1041631 None:intergenic 30.0%
TCATATAAACATTCACTCAC+TGG + chr2.1:1043927-1043946 None:intergenic 30.0%
TCTAGAGAATCTTCTTTGTT+TGG + chr2.1:1043990-1044009 None:intergenic 30.0%
! AAAAAACGTGTCTGAAATGT+GGG - chr2.1:1041769-1041788 MS.gene85957:intron 30.0%
! AAAATGTCCTATTGGTTAGT+AGG + chr2.1:1041572-1041591 None:intergenic 30.0%
! AATTGTTAATTTGGACACAC+AGG - chr2.1:1041323-1041342 MS.gene85957:CDS 30.0%
! CAAATATTGTAGGGTATCAT+GGG + chr2.1:1042012-1042031 None:intergenic 30.0%
! CTTCTTTGTTTGGAATAGAA+AGG + chr2.1:1043980-1043999 None:intergenic 30.0%
! GCATGAACTAGTTAATTTTG+AGG + chr2.1:1043809-1043828 None:intergenic 30.0%
! TAAAAAACGTGTCTGAAATG+TGG - chr2.1:1041768-1041787 MS.gene85957:intron 30.0%
! TAGGATTTGGATTAGGTATA+AGG - chr2.1:1041661-1041680 MS.gene85957:intron 30.0%
! TTGATTGCTTGCTTCTTTTT+AGG - chr2.1:1040975-1040994 MS.gene85957:intron 30.0%
! TTTTCAATCTTCTCTTTCGA+AGG - chr2.1:1040421-1040440 MS.gene85957:intron 30.0%
!!! GCTGTTATTATATTTTGACG+TGG - chr2.1:1040136-1040155 MS.gene85957:intron 30.0%
!!! GGCATTTTTTGTAAAGAGTT+TGG + chr2.1:1042055-1042074 None:intergenic 30.0%
AATGTCTCTAGTAAGAAGGT+TGG + chr2.1:1041033-1041052 None:intergenic 35.0%
ACCAACTTCTTCCATGAATA+TGG - chr2.1:1043716-1043735 MS.gene85957:intron 35.0%
ACCAATTAGGTAAAGAGTCA+AGG - chr2.1:1042721-1042740 MS.gene85957:intron 35.0%
ATACTACTCCTAATATGGTC+AGG - chr2.1:1041221-1041240 MS.gene85957:intron 35.0%
ATATGGATCCTTATAGTAGG+GGG - chr2.1:1041862-1041881 MS.gene85957:intron 35.0%
ATCATGAGCATTTGATCTGT+TGG - chr2.1:1041964-1041983 MS.gene85957:intron 35.0%
CACAAGCTTATGTTCATGTT+AGG - chr2.1:1042292-1042311 MS.gene85957:CDS 35.0%
CACACAAGTGCAAATATTGT+AGG + chr2.1:1042022-1042041 None:intergenic 35.0%
CATGTGATTATTTGAACGGA+TGG - chr2.1:1040927-1040946 MS.gene85957:intron 35.0%
CCAACTTCTTCCATGAATAT+GGG - chr2.1:1043717-1043736 MS.gene85957:intron 35.0%
CTTTAACGGAGTTAAGATCA+AGG + chr2.1:1040274-1040293 None:intergenic 35.0%
GTGGGTCGTTTGATATTTAT+TGG - chr2.1:1041787-1041806 MS.gene85957:intron 35.0%
TACTACTCCTAATATGGTCA+GGG - chr2.1:1041222-1041241 MS.gene85957:intron 35.0%
TCAACATCAACACTCCTATT+GGG + chr2.1:1041462-1041481 None:intergenic 35.0%
TCATGAGCATTTGATCTGTT+GGG - chr2.1:1041965-1041984 MS.gene85957:intron 35.0%
TCCATTAACGGCTTCTTTAA+CGG + chr2.1:1040288-1040307 None:intergenic 35.0%
TCCTTGACTCTTTACCTAAT+TGG + chr2.1:1042725-1042744 None:intergenic 35.0%
TGACAATGTCTCTAGTAAGA+AGG + chr2.1:1041037-1041056 None:intergenic 35.0%
TGACTTACTTGGTAGGAATT+GGG + chr2.1:1042443-1042462 None:intergenic 35.0%
TGTAGAATTGGTACTGCTAT+GGG - chr2.1:1042097-1042116 MS.gene85957:intron 35.0%
TGTGATGTGAGTTACCAATT+AGG - chr2.1:1042708-1042727 MS.gene85957:intron 35.0%
TGTTGAAAAGAATTGGTGGA+TGG - chr2.1:1043578-1043597 MS.gene85957:intron 35.0%
TTAAGAGTGACTTACTTGGT+AGG + chr2.1:1042450-1042469 None:intergenic 35.0%
TTATGTTCATGTTAGGGATG+TGG - chr2.1:1042299-1042318 MS.gene85957:CDS 35.0%
TTGATTGTAGGTTGTAGCAA+TGG + chr2.1:1042210-1042229 None:intergenic 35.0%
TTGTAGAATTGGTACTGCTA+TGG - chr2.1:1042096-1042115 MS.gene85957:intron 35.0%
TTTGGTATCATTACTCACGA+AGG - chr2.1:1042649-1042668 MS.gene85957:intron 35.0%
! AAAACTGAAGGATTTGGGAT+TGG - chr2.1:1043893-1043912 MS.gene85957:CDS 35.0%
! AAAAGAGAAAGGAGTGGATT+TGG - chr2.1:1042155-1042174 MS.gene85957:intron 35.0%
! AATTGGTAACTCACATCACA+TGG + chr2.1:1042708-1042727 None:intergenic 35.0%
! GCAAATATTGTAGGGTATCA+TGG + chr2.1:1042013-1042032 None:intergenic 35.0%
! GTGGTTTTCACATCATCAAT+TGG - chr2.1:1041420-1041439 MS.gene85957:CDS 35.0%
!! AAGATATGTGGTTTTACTCG+AGG + chr2.1:1043864-1043883 None:intergenic 35.0%
!! ATTGTGCTTGCATTGATTGT+AGG + chr2.1:1042222-1042241 None:intergenic 35.0%
!!! TCTTTCAAGTGCCCATTTTT+TGG + chr2.1:1040206-1040225 None:intergenic 35.0%
AAATGGGCACTTGAAAGAGT+TGG - chr2.1:1040208-1040227 MS.gene85957:intron 40.0%
AAGTATCTACCAGAAGCAGA+AGG + chr2.1:1042354-1042373 None:intergenic 40.0%
AATAGTCCCCTGACCATATT+AGG + chr2.1:1041232-1041251 None:intergenic 40.0%
AATGGTCCAAGAACCAAAAC+TGG + chr2.1:1042192-1042211 None:intergenic 40.0%
ACACTTTGTCTTCGTCTAAG+TGG - chr2.1:1040637-1040656 MS.gene85957:intron 40.0%
ACTACTCCTAATATGGTCAG+GGG - chr2.1:1041223-1041242 MS.gene85957:intron 40.0%
AGAAGCAAGCAATCAAGGTT+TGG + chr2.1:1040971-1040990 None:intergenic 40.0%
AGCTTGTGTTGCATTTGCAT+AGG + chr2.1:1042280-1042299 None:intergenic 40.0%
AGTGATATGTTGTCACTCCT+AGG - chr2.1:1043474-1043493 MS.gene85957:CDS 40.0%
AGTTCATGCTTTACACATGC+AGG - chr2.1:1043820-1043839 MS.gene85957:intron 40.0%
ATCAATTGGCGCAGTCTATA+TGG - chr2.1:1041434-1041453 MS.gene85957:CDS 40.0%
ATTGAGCATGCCCATATTCA+TGG + chr2.1:1043730-1043749 None:intergenic 40.0%
CAACATCAACACTCCTATTG+GGG + chr2.1:1041461-1041480 None:intergenic 40.0%
CATGAGCATTTGATCTGTTG+GGG - chr2.1:1041966-1041985 MS.gene85957:intron 40.0%
CCCATATTCATGGAAGAAGT+TGG + chr2.1:1043720-1043739 None:intergenic 40.0%
CTCAACATCAACACTCCTAT+TGG + chr2.1:1041463-1041482 None:intergenic 40.0%
GAATTTCAACAAGCTCTCCA+CGG + chr2.1:1042398-1042417 None:intergenic 40.0%
GACACCATGACATCCATTAA+CGG + chr2.1:1040300-1040319 None:intergenic 40.0%
GAGAAAGGCTATACTGTTAG+AGG - chr2.1:1039815-1039834 MS.gene85957:CDS 40.0%
GCAGAATCTTCCTCAATTTC+CGG - chr2.1:1039728-1039747 MS.gene85957:CDS 40.0%
GGAAATTGAGGAAGATTCTG+CGG + chr2.1:1039729-1039748 None:intergenic 40.0%
GTGACTTACTTGGTAGGAAT+TGG + chr2.1:1042444-1042463 None:intergenic 40.0%
TACGTTCCATTTCCACCTAA+AGG - chr2.1:1043630-1043649 MS.gene85957:intron 40.0%
TATGAGAAACCTTCTGCTTC+TGG - chr2.1:1042342-1042361 MS.gene85957:CDS 40.0%
TCATTACTCACGAAGGTTAC+TGG - chr2.1:1042656-1042675 MS.gene85957:intron 40.0%
TCCGTTAAAGAAGCCGTTAA+TGG - chr2.1:1040284-1040303 MS.gene85957:intron 40.0%
TGATTATTTGAACGGATGGC+AGG - chr2.1:1040931-1040950 MS.gene85957:intron 40.0%
TTGGAATAGAAAGGTGACCT+TGG + chr2.1:1043971-1043990 None:intergenic 40.0%
TTTAGTTGCCCCCTACTATA+AGG + chr2.1:1041873-1041892 None:intergenic 40.0%
! GGAATTTTGCAAGAACACCA+AGG - chr2.1:1041509-1041528 MS.gene85957:CDS 40.0%
! TGTTAATTTGGACACACAGG+AGG - chr2.1:1041326-1041345 MS.gene85957:CDS 40.0%
!! CAATAGGAGTGTTGATGTTG+AGG - chr2.1:1041461-1041480 MS.gene85957:CDS 40.0%
!! CATGGAAGAAGTTGGTGATA+AGG + chr2.1:1043712-1043731 None:intergenic 40.0%
!! TTGGTCTTGTAGGCTCTTAA+CGG + chr2.1:1043952-1043971 None:intergenic 40.0%
!!! GTGAATCCAGTTTTGGTTCT+TGG - chr2.1:1042183-1042202 MS.gene85957:intron 40.0%
AACCAACCACCAATGTTCCT+AGG + chr2.1:1043494-1043513 None:intergenic 45.0%
AATTGAGGAAGATTCTGCGG+CGG + chr2.1:1039726-1039745 None:intergenic 45.0%
ACTGACGGGGTTATCTGTAA+CGG + chr2.1:1040339-1040358 None:intergenic 45.0%
AGCAAGCAATCAAGGTTTGG+TGG + chr2.1:1040968-1040987 None:intergenic 45.0%
AGGGAAGGGAATATTGACCT+TGG + chr2.1:1041529-1041548 None:intergenic 45.0%
AGGTCTTAGCTGAACCAGTT+AGG + chr2.1:1042260-1042279 None:intergenic 45.0%
CAGTATAGCCTTTCTCCAAG+AGG + chr2.1:1039811-1039830 None:intergenic 45.0%
CAGTCTATATGGACCCCAAT+AGG - chr2.1:1041445-1041464 MS.gene85957:CDS 45.0%
GTGTGACTGCATGCAATCAT+AGG - chr2.1:1041823-1041842 MS.gene85957:intron 45.0%
GTTAAGAGCCTACAAGACCA+AGG - chr2.1:1043951-1043970 MS.gene85957:CDS 45.0%
GTTAAGCTCCTCTTGGAGAA+AGG - chr2.1:1039800-1039819 MS.gene85957:CDS 45.0%
GTTGTCACTCCTAGGAACAT+TGG - chr2.1:1043482-1043501 MS.gene85957:CDS 45.0%
TATGGTTTCGCCGGAAATTG+AGG + chr2.1:1039741-1039760 None:intergenic 45.0%
TGAGTCTTGCTGGAGTGATT+TGG - chr2.1:1041488-1041507 MS.gene85957:CDS 45.0%
TGGGATGTGGCAAAAGAGAA+AGG - chr2.1:1042144-1042163 MS.gene85957:intron 45.0%
TGGTAGGAATTGGGTACTCA+GGG + chr2.1:1042434-1042453 None:intergenic 45.0%
TGTGGCAAAAGAGAAAGGAG+TGG - chr2.1:1042149-1042168 MS.gene85957:intron 45.0%
TTCTTTGCTCCATTCACTGC+TGG + chr2.1:1041363-1041382 None:intergenic 45.0%
TTGGATGGTTAAGCTCCTCT+TGG - chr2.1:1039793-1039812 MS.gene85957:CDS 45.0%
TTGGTAGGAATTGGGTACTC+AGG + chr2.1:1042435-1042454 None:intergenic 45.0%
TTTGGACACACAGGAGGAAA+TGG - chr2.1:1041332-1041351 MS.gene85957:CDS 45.0%
! GAAGCCGTTAATGGATGTCA+TGG - chr2.1:1040293-1040312 MS.gene85957:intron 45.0%
! GGTCGTAGTGAATCCAGTTT+TGG - chr2.1:1042176-1042195 MS.gene85957:intron 45.0%
! TAGGAACATTGGTGGTTGGT+TGG - chr2.1:1043493-1043512 MS.gene85957:CDS 45.0%
! TTTTGTACCTGGGTTTCGCA+TGG + chr2.1:1039843-1039862 None:intergenic 45.0%
!! AAAGGTGACCTTGGTCTTGT+AGG + chr2.1:1043962-1043981 None:intergenic 45.0%
!! CAAGGTTTGGTGGTGAGAAT+AGG + chr2.1:1040958-1040977 None:intergenic 45.0%
!! TTGAGGTTGATGAGTCTTGC+TGG - chr2.1:1041478-1041497 MS.gene85957:CDS 45.0%
!! AAATAAAATTAAATAAATGA+AGG + chr2.1:1041549-1041568 None:intergenic 5.0%
!! AATAAAATTAAATAAATGAA+GGG + chr2.1:1041548-1041567 None:intergenic 5.0%
!!! TTTTTATTTATTTTTATTTG+TGG - chr2.1:1040830-1040849 MS.gene85957:intron 5.0%
AGTGGCTGAACAAGCAGCAT+GGG - chr2.1:1042125-1042144 MS.gene85957:intron 50.0%
CTGACGGGGTTATCTGTAAC+GGG + chr2.1:1040338-1040357 None:intergenic 50.0%
CTGCAGCAGAAGCAAAAGTG+AGG - chr2.1:1041394-1041413 MS.gene85957:CDS 50.0%
GCTGAAAGTTCACTTCACCG+TGG - chr2.1:1042378-1042397 MS.gene85957:intron 50.0%
GGCGAAACCATATGTGTCAC+CGG - chr2.1:1039749-1039768 MS.gene85957:CDS 50.0%
GGGCACTTGAAAGAGTTGGA+AGG - chr2.1:1040212-1040231 MS.gene85957:intron 50.0%
GGTGACACATATGGTTTCGC+CGG + chr2.1:1039750-1039769 None:intergenic 50.0%
GTACTGCTATGGGAAAGCAG+TGG - chr2.1:1042107-1042126 MS.gene85957:intron 50.0%
GTCACTCCTAGGAACATTGG+TGG - chr2.1:1043485-1043504 MS.gene85957:CDS 50.0%
TGAACAAGCAGCATGGGATG+TGG - chr2.1:1042131-1042150 MS.gene85957:intron 50.0%
TGGCTTCATCGCTTCTTGGA+TGG - chr2.1:1039778-1039797 MS.gene85957:CDS 50.0%
! CTCCTAGGAACATTGGTGGT+TGG - chr2.1:1043489-1043508 MS.gene85957:CDS 50.0%
AGAAGCAAAAGTGAGGCGCG+TGG - chr2.1:1041401-1041420 MS.gene85957:CDS 55.0%
AGAGGAACCATGCGAAACCC+AGG - chr2.1:1039833-1039852 MS.gene85957:CDS 55.0%
CAGTGGCTGAACAAGCAGCA+TGG - chr2.1:1042124-1042143 MS.gene85957:intron 55.0%
CCAAGAAGCGATGAAGCCAC+CGG + chr2.1:1039777-1039796 None:intergenic 55.0%
GGACACACAGGAGGAAATGG+TGG - chr2.1:1041335-1041354 MS.gene85957:CDS 55.0%
! ATGGTGGAGCCAGCAGTGAA+TGG - chr2.1:1041351-1041370 MS.gene85957:CDS 55.0%
ACCATATGTGTCACCGGCGC+CGG - chr2.1:1039755-1039774 MS.gene85957:CDS 60.0%
CCGGTGGCTTCATCGCTTCT+TGG - chr2.1:1039774-1039793 MS.gene85957:CDS 60.0%
TGAGGAAGATTCTGCGGCGG+CGG + chr2.1:1039723-1039742 None:intergenic 60.0%
!! GCGGCATCGGTGTCACGTAT+CGG + chr2.1:1040014-1040033 None:intergenic 60.0%
! ATATGTGTCACCGGCGCCGG+TGG - chr2.1:1039758-1039777 MS.gene85957:CDS 65.0%
!! ACCGGCGCCGGTGACACATA+TGG + chr2.1:1039759-1039778 None:intergenic 65.0%
AGCGATGAAGCCACCGGCGC+CGG + chr2.1:1039771-1039790 None:intergenic 70.0%
GGAAGATTCTGCGGCGGCGG+TGG + chr2.1:1039720-1039739 None:intergenic 70.0%
! GCGGCGGCGGTGGTAGCAGC+AGG + chr2.1:1039710-1039729 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 1039704 1044022 1039704 ID=MS.gene85957
chr2.1 mRNA 1039704 1044022 1039704 ID=MS.gene85957.t1;Parent=MS.gene85957
chr2.1 exon 1043872 1044022 1043872 ID=MS.gene85957.t1.exon1;Parent=MS.gene85957.t1
chr2.1 CDS 1043872 1044022 1043872 ID=cds.MS.gene85957.t1;Parent=MS.gene85957.t1
chr2.1 exon 1043374 1043528 1043374 ID=MS.gene85957.t1.exon2;Parent=MS.gene85957.t1
chr2.1 CDS 1043374 1043528 1043374 ID=cds.MS.gene85957.t1;Parent=MS.gene85957.t1
chr2.1 exon 1042196 1042381 1042196 ID=MS.gene85957.t1.exon3;Parent=MS.gene85957.t1
chr2.1 CDS 1042196 1042381 1042196 ID=cds.MS.gene85957.t1;Parent=MS.gene85957.t1
chr2.1 exon 1041272 1041624 1041272 ID=MS.gene85957.t1.exon4;Parent=MS.gene85957.t1
chr2.1 CDS 1041272 1041624 1041272 ID=cds.MS.gene85957.t1;Parent=MS.gene85957.t1
chr2.1 exon 1039704 1039884 1039704 ID=MS.gene85957.t1.exon5;Parent=MS.gene85957.t1
chr2.1 CDS 1039704 1039884 1039704 ID=cds.MS.gene85957.t1;Parent=MS.gene85957.t1
Gene Sequence

>MS.gene85957

ATGCCTGCTGCTACCACCGCCGCCGCAGAATCTTCCTCAATTTCCGGCGAAACCATATGTGTCACCGGCGCCGGTGGCTTCATCGCTTCTTGGATGGTTAAGCTCCTCTTGGAGAAAGGCTATACTGTTAGAGGAACCATGCGAAACCCAGGTACAAAAAATATTCTACTTAATTCCTTAATTTAATTCACATAAATAATATCTTAATTGTGTTTTAATTTTATGATATCATGAAAAGATCATGTTGAGATCATCATACATAATATTAGTTAGTTGTATACAACTATAGTCATGATATTTAGAGTGTCCGATACGTGACACCGATGCCGCATATAATTACATTGAATTAATTACGTATTGTCACAAAATAAATTTTACTATGTATGTATGGGTTCATGTTGAAATAACGTTGTTGATAAGATTTGGTGAATTGCTGTTATTATATTTTGACGTGGGAATGAATGAAATTTGATATAAATGAATTAATTTTTCAGATGATCCAAAAAATGGGCACTTGAAAGAGTTGGAAGGAGCAAAAGAAAGACTAACTTTGGTCAAAGTTGATCTCCTTGATCTTAACTCCGTTAAAGAAGCCGTTAATGGATGTCATGGTGTCTTTCACACTGCTTCTCCCGTTACAGATAACCCCGTCAGTTTTTAATTAATTTCCTCTATTTCTATTCTATTCTTCCTTAATTGAATTTTTTTCATTCTTAATTTTCAATCTTCTCTTTCGAAGGATCCAATCCAAAAAGAAAAATAATAGTCTTACTCTCTAATCTATCTTAGGATGAATGTCATATTTGTAAAAAGTACATTTCAAAATAAACGTCATTTTCCCTTTAAAAAAGTTAAATGTTATTTACTCTTTTTAGTATAAATAATATTGATTATTTTTTCCTTTTAATTCCATCATATCTAAGATATTATATTACACTTTGTCTTCGTCTAAGTGGTGACCACATAGCCTCTAAAATAATATGGTAAATTTTATCAAAAGAAATGGCGAATAGTTAAATACAAATAGAGTAATTTTACCTCTCAAAAAAAAAAAAATAGAGTAATTTTAGTTTTTTTTTTTGTTTTGAAAGTAGTAATTTTAGTTATTTTTCTTTCGTTTATAATTTTTTTATTTATTTTTATTTGTGGATGATAAGTTACATATATAGTTTGTCAAAAAAAAAAAAAGTAACATATATAGTAGCATTGACACAAAATCATGTCATGTGATTATTTGAACGGATGGCAGGTCCTATTCTCACCACCAAACCTTGATTGCTTGCTTCTTTTTAGGATAATAAATGTGGCATGTGAATTTCATAATGACCAACCTTCTTACTAGAGACATTGTCAAAAAAAAAAAAAAACTTTTTGTTAGAGAAATGAATTTTGCACGACGATTATGTGCAACTCTGTTTTTTATATTCTAATTGTTTTCTTACGGTCCCTTTTACTAGTTTTCGTGTTAATATCTATATTTCTTTATATATTTAATTCAAATAAGATAGCTCTTCTTAATACTACTCCTAATATGGTCAGGGGACTATTATTCTATTATTTTAAATTTCAATTGCAAAATACCAATTTGATTTTATAGGAAAGTTATTGAATTTGATTTGAATTGTTAATTTGGACACACAGGAGGAAATGGTGGAGCCAGCAGTGAATGGAGCAAAGAATGTGATCATAGCTGCAGCAGAAGCAAAAGTGAGGCGCGTGGTTTTCACATCATCAATTGGCGCAGTCTATATGGACCCCAATAGGAGTGTTGATGTTGAGGTTGATGAGTCTTGCTGGAGTGATTTGGAATTTTGCAAGAACACCAAGGTCAATATTCCCTTCCCTTCATTTATTTAATTTTATTTCCTACTAACCAATAGGACATTTTTTTTTTTTTGAGCAAAACCAATAGGACATATGACACTATAGATATACTATAATCATACTAATATTATGATAGGATTTGGATTAGGTATAAGGTGACGACATGTAGTTATACATATTTTGGTCGTCCAATCAAGATCGATTCATATTTAGAGTAAATTTTGATTTTCTTGAAATTTTTAAAAAACGTGTCTGAAATGTGGGTCGTTTGATATTTATTGGACAACTATGATACGTGTGACTGCATGCAATCATAGGATTGTGATTGAACATAATATGGATCCTTATAGTAGGGGGCAACTAAATACATTTAATTTAAGTTTTGATAAATGCGATTGATTTTAGTCTCGTAAGTGCAATTCAAATTATAAAATGCATCATGAGCATTTGATCTGTTGGGGCGTAACTGCGTAAGTTTGAACCCATGATACCCTACAATATTTGCACTTGTGTGAGTTTTGCCACCAAACTCTTTACAAAAAATGCCATTGATTTGAATTTTTGAATATTGTAGAATTGGTACTGCTATGGGAAAGCAGTGGCTGAACAAGCAGCATGGGATGTGGCAAAAGAGAAAGGAGTGGATTTGGTCGTAGTGAATCCAGTTTTGGTTCTTGGACCATTGCTACAACCTACAATCAATGCAAGCACAATTCACATACTAAAATACCTAACTGGTTCAGCTAAGACCTATGCAAATGCAACACAAGCTTATGTTCATGTTAGGGATGTGGCATTAGCTCACATACTTGTTTATGAGAAACCTTCTGCTTCTGGTAGATACTTATGTGCTGAAAGTTCACTTCACCGTGGAGAGCTTGTTGAAATTCTTGCTAAGTATTTCCCTGAGTACCCAATTCCTACCAAGTAAGTCACTCTTAAAAAAAAGTCACTTTTAAATTATTCTTGTACATTCAACTTATTGATTTTATTCTTTTTTTGGTATATATATCATGGCCAAAGTATACTACGTATTTCGTTATTTTTCCATTTCCATTTAAATGAAATGTTTTTGACATTCGTAATAGATACACTAACCACAAGTTTTAGTATTTTGCAATTTTGGTATCATTACTCACGAAGGTTACTGGAAAATGACATCTGTTAGTACTAGTAGCCATGTGATGTGAGTTACCAATTAGGTAAAGAGTCAAGGATTTTGATAATATTTTGGTCTCATTCATTGCTTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATTTGGCTATTTTTTCAATATAATAATCATGCAGTGATATGTTGTCACTCCTAGGAACATTGGTGGTTGGTTGGTTAAACACTTTATTTTGTAAGATGTAGAATAAAATGAAAATATGTAAAATGTTGAAAGAGTATGTTGAAAAGAATTGGTGGATGGTATACCAAATTTGATTTGTTTATGTGGTCTACGTTCCATTTCCACCTAAAGGAATTATTAAATTTATAAAATCAAGTGGAGCATATGAGTCCTTACCAACCCCAATGTCCTTATCACCAACTTCTTCCATGAATATGGGCATGCTCAATCATTAATGCCAATACATGTTGTCTAAATGTAATAATATTTTCACCTTTAATCATAGCCTCAAAATTAACTAGTTCATGCTTTACACATGCAGGTGTTCAGATGAAAAGAATCCTCGAGTAAAACCACATATCTTCTCAAATAAAAAACTGAAGGATTTGGGATTGGAGTTCACTCCAGTGAGTGAATGTTTATATGAAACCGTTAAGAGCCTACAAGACCAAGGTCACCTTTCTATTCCAAACAAAGAAGATTCTCTAGAAGTCAAATCCTAA
Protein sequence

>MS.gene85957.t1

MPAATTAAAESSSISGETICVTGAGGFIASWMVKLLLEKGYTVRGTMRNPDDPKNGHLKELEGAKERLTLVKVDLLDLNSVKEAVNGCHGVFHTASPVTDNPEEMVEPAVNGAKNVIIAAAEAKVRRVVFTSSIGAVYMDPNRSVDVEVDESCWSDLEFCKNTKNWYCYGKAVAEQAAWDVAKEKGVDLVVVNPVLVLGPLLQPTINASTIHILKYLTGSAKTYANATQAYVHVRDVALAHILVYEKPSASGRYLCAESSLHRGELVEILAKYFPEYPIPTKCSDEKNPRVKPHIFSNKKLKDLGLEFTPVSECLYETVKSLQDQGHLSIPNKEDSLEVKS