AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene48491


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene48491.t1 MTR_3g101500 97.297 333 9 0 1 333 1 333 0.0 667
MS.gene48491.t1 MTR_3g101500 95.318 299 14 0 1 299 1 299 0.0 585
MS.gene48491.t1 MTR_3g101500 96.316 190 7 0 1 190 1 190 1.68e-131 374
MS.gene48491.t1 MTR_3g105440 26.124 356 212 14 5 322 10 352 4.02e-18 85.5
MS.gene48491.t1 MTR_3g105440 26.361 349 220 14 5 322 10 352 4.07e-18 85.5
MS.gene48491.t1 MTR_7g074820 26.316 285 172 8 3 260 7 280 2.92e-16 79.0
MS.gene48491.t1 MTR_7g074850 26.074 326 197 10 3 302 7 314 3.92e-16 78.6
MS.gene48491.t1 MTR_7g074710 27.668 253 150 9 3 230 7 251 4.75e-16 78.2
MS.gene48491.t1 MTR_1g022445 26.523 279 174 10 4 260 8 277 3.40e-15 75.9
MS.gene48491.t1 MTR_1g022440 26.071 280 174 11 4 260 8 277 9.70e-15 74.7
MS.gene48491.t1 MTR_7g074880 24.561 285 174 9 3 260 7 277 3.07e-14 72.8
MS.gene48491.t1 MTR_4g081440 24.014 279 178 10 3 250 19 294 7.35e-14 72.0
MS.gene48491.t1 MTR_4g081440 24.014 279 178 10 3 250 23 298 7.56e-14 72.0
MS.gene48491.t1 MTR_7g117190 26.897 290 147 15 3 242 6 280 1.15e-13 71.2
MS.gene48491.t1 MTR_7g117190 26.897 290 147 15 3 242 6 280 1.28e-13 71.2
MS.gene48491.t1 MTR_4g077130 25.806 279 178 7 2 260 7 276 1.81e-13 70.5
MS.gene48491.t1 MTR_4g077100 24.820 278 182 9 2 260 9 278 2.99e-13 69.7
MS.gene48491.t1 MTR_4g077100 25.180 278 181 9 2 260 9 278 6.08e-13 68.9
MS.gene48491.t1 MTR_2g028620 29.020 255 144 13 4 231 10 254 1.16e-12 68.2
MS.gene48491.t1 MTR_2g028620 29.020 255 144 13 4 231 10 254 1.77e-12 67.8
MS.gene48491.t1 MTR_4g009040 26.705 352 199 14 2 332 11 324 2.48e-12 67.4
MS.gene48491.t1 MTR_8g062110 26.295 251 159 8 2 232 7 251 5.22e-12 65.9
MS.gene48491.t1 MTR_8g062110 26.295 251 159 8 2 232 7 251 5.88e-12 65.9
MS.gene48491.t1 MTR_5g072620 27.200 250 157 8 2 231 3 247 6.21e-12 66.2
MS.gene48491.t1 MTR_2g073240 23.868 243 170 6 2 230 19 260 7.07e-12 67.0
MS.gene48491.t1 MTR_4g009040 26.404 356 199 14 2 332 11 328 8.18e-12 65.9
MS.gene48491.t1 MTR_0034s0060 23.457 243 171 6 2 230 137 378 8.47e-12 66.6
MS.gene48491.t1 MTR_8g062110 26.295 251 159 8 2 232 7 251 1.01e-11 65.5
MS.gene48491.t1 MTR_8g062110 26.295 251 159 8 2 232 16 260 1.09e-11 65.5
MS.gene48491.t1 MTR_2g013250 25.806 279 163 13 3 242 6 279 3.15e-11 63.9
MS.gene48491.t1 MTR_4g009690 27.635 351 196 13 2 332 11 323 8.34e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene48491.t1 AT4G33360 70.997 331 96 0 3 333 14 344 0.0 511
MS.gene48491.t1 AT4G33360 71.562 320 91 0 3 322 2 321 7.81e-179 498
MS.gene48491.t1 AT4G33360 71.930 285 80 0 3 287 14 298 4.18e-160 450
MS.gene48491.t1 AT1G09490 31.818 264 155 8 2 245 6 264 2.19e-23 99.0
MS.gene48491.t1 AT1G09480 29.924 264 160 8 2 245 6 264 4.47e-22 95.5
MS.gene48491.t1 AT1G09480 29.924 264 160 8 2 245 53 311 8.23e-22 95.5
MS.gene48491.t1 AT1G09510 30.798 263 153 10 2 242 6 261 1.93e-20 90.9
MS.gene48491.t1 AT1G61720 27.138 269 171 6 2 245 11 279 1.18e-17 83.2
MS.gene48491.t1 AT1G09490 30.918 207 127 6 50 245 32 233 5.01e-17 80.5
MS.gene48491.t1 AT2G45400 26.389 288 170 10 4 260 40 316 5.73e-15 75.1
MS.gene48491.t1 AT2G45400 25.763 295 177 11 4 267 40 323 7.44e-15 75.1
MS.gene48491.t1 AT1G66800 27.519 258 164 8 2 242 6 257 1.15e-14 74.3
MS.gene48491.t1 AT5G58490 30.085 236 138 8 4 218 9 238 1.72e-14 73.6
MS.gene48491.t1 AT1G09500 28.516 256 153 9 2 234 6 254 2.89e-14 72.4
MS.gene48491.t1 AT1G09500 28.516 256 153 9 2 234 6 254 5.66e-14 72.4
MS.gene48491.t1 AT5G19440 29.762 252 150 8 2 232 8 253 7.02e-14 72.0
MS.gene48491.t1 AT1G53500 25.514 243 166 6 2 230 9 250 2.11e-13 71.6
MS.gene48491.t1 AT2G02400 27.519 258 164 10 2 241 4 256 2.80e-13 70.1
MS.gene48491.t1 AT2G23910 25.899 278 170 10 4 260 10 272 4.55e-13 68.9
MS.gene48491.t1 AT2G23910 25.899 278 170 10 4 260 10 272 5.57e-13 68.9
MS.gene48491.t1 AT1G51410 28.195 266 162 9 2 245 7 265 6.83e-13 68.9
MS.gene48491.t1 AT2G23910 25.899 278 170 10 4 260 10 272 7.57e-13 68.6
MS.gene48491.t1 AT2G33590 26.693 251 161 10 3 234 8 254 4.44e-12 66.6
MS.gene48491.t1 AT5G14700 29.082 196 112 8 4 173 55 249 7.84e-12 65.5
MS.gene48491.t1 AT2G45400 29.592 196 112 7 4 173 40 235 1.02e-11 64.7
MS.gene48491.t1 AT5G14700 29.082 196 112 8 4 173 55 249 1.92e-11 65.1
MS.gene48491.t1 AT1G80820 29.435 248 150 10 2 232 6 245 5.50e-11 62.8

Find 90 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTATCCTGGCGTAATTTA+TGG 0.147996 3.1:+80588580 MS.gene48491:CDS
AAGCCCTTCTCTCAGGCTTC+TGG 0.219625 3.1:-80589922 None:intergenic
GCACATTGCTGCTATGAAAA+AGG 0.255767 3.1:+80589289 MS.gene48491:CDS
TTGTGTGTGATTGAAGCTTA+TGG 0.293479 3.1:+80589422 MS.gene48491:CDS
CTTACCGGTGGACTGATAAA+AGG 0.344492 3.1:-80589485 None:intergenic
AGCCCTTCTCTCAGGCTTCT+GGG 0.368707 3.1:-80589921 None:intergenic
TTTAGAGGGATCGGGGAGCC+AGG 0.391159 3.1:-80588168 None:intergenic
ATCAATTAGGTCAACGTTGA+AGG 0.409609 3.1:+80588258 MS.gene48491:intron
TTTGCTCTTGGACCAACTGA+TGG 0.422894 3.1:+80588351 MS.gene48491:CDS
ACTACTCTGGTTGAAGAACT+TGG 0.443165 3.1:+80589953 MS.gene48491:CDS
CCAATAGTGTTGCTTTATCC+TGG 0.445675 3.1:+80588568 MS.gene48491:CDS
TCTTACAGTGATGAATTTAG+AGG 0.452733 3.1:-80588183 None:intergenic
GAGCTTTCCACCAAGGTAAC+CGG 0.454097 3.1:-80587967 None:intergenic
AACAAGTTTCTCCACTGTCT+TGG 0.460174 3.1:-80588313 None:intergenic
CCTTGACGGAGTAACCTTGC+CGG 0.465146 3.1:-80588004 None:intergenic
CCAGGATAAAGCAACACTAT+TGG 0.469005 3.1:-80588568 None:intergenic
GTGGAAGACGACGGAGCAAT+CGG 0.472753 3.1:-80588126 None:intergenic
CCTCTGCAAGCCCTTCTCTC+AGG 0.477748 3.1:-80589929 None:intergenic
GTTGTGGTGACCGGTGCATC+CGG 0.479262 3.1:+80587948 MS.gene48491:CDS
GTGATGAATTTAGAGGGATC+GGG 0.481282 3.1:-80588176 None:intergenic
CCTGGCGTAATTTATGGACC+TGG 0.482874 3.1:+80588586 MS.gene48491:CDS
ACCGGTGCATCCGGTTACCT+TGG 0.487879 3.1:+80587957 MS.gene48491:CDS
CTGGTTGAAGAACTTGGGAT+TGG 0.488771 3.1:+80589959 MS.gene48491:CDS
AGTGATGAATTTAGAGGGAT+CGG 0.492886 3.1:-80588177 None:intergenic
TGCATTGCAAGCTGCGTCTG+AGG 0.495160 3.1:+80588540 MS.gene48491:CDS
CGGAGTAACCTTGCCGGTGG+AGG 0.498534 3.1:-80587998 None:intergenic
GACGACGGAGCAATCGGAGA+AGG 0.508216 3.1:-80588120 None:intergenic
GCATTGCAAGCTGCGTCTGA+GGG 0.514048 3.1:+80588541 MS.gene48491:CDS
CCAGGTCCATAAATTACGCC+AGG 0.517182 3.1:-80588586 None:intergenic
AGGAAACGTTCTTGCAAAGA+TGG 0.521510 3.1:+80588621 MS.gene48491:CDS
TCGCCGCTCTCGTTGAACCC+TGG 0.524911 3.1:+80588150 MS.gene48491:CDS
AACCCAGAAGCCTGAGAGAA+GGG 0.528826 3.1:+80589919 MS.gene48491:CDS
GGTGCATCCGGTTACCTTGG+TGG 0.530784 3.1:+80587960 MS.gene48491:CDS
TTTCCTTTGCCTATGTAACC+AGG 0.531525 3.1:-80589224 None:intergenic
GGGGAAAGGTATTTACTGAC+GGG 0.541865 3.1:+80589320 MS.gene48491:CDS
CTACTCTGGTTGAAGAACTT+GGG 0.547506 3.1:+80589954 MS.gene48491:CDS
TTAGAGGGATCGGGGAGCCA+GGG 0.553029 3.1:-80588167 None:intergenic
AAGCTTCAATCACACACAAA+GGG 0.553221 3.1:-80589418 None:intergenic
GGAGTAACCTTGCCGGTGGA+GGG 0.554584 3.1:-80587997 None:intergenic
GGTAGATTACCTGGTTACAT+AGG 0.554685 3.1:+80589215 MS.gene48491:CDS
GCCGTAGACTATTTCGGTAG+AGG 0.554834 3.1:-80588066 None:intergenic
ATGAAGAAGGTTGTGGTGAC+CGG 0.557804 3.1:+80587939 MS.gene48491:CDS
CCCTCTACCGAAATAGTCTA+CGG 0.558374 3.1:+80588065 MS.gene48491:CDS
TAGGGTGAAAGGAATGAAGA+AGG 0.560617 3.1:+80587926 None:intergenic
AGGAAGTGCGGAGAGATCGC+TGG 0.560868 3.1:-80588042 None:intergenic
GATGTCGCCGTAGACTATTT+CGG 0.563374 3.1:-80588072 None:intergenic
ACCAAGGTAACCGGATGCAC+CGG 0.568156 3.1:-80587958 None:intergenic
GGGTCTGACTATGACCTTGA+CGG 0.570927 3.1:-80588018 None:intergenic
GTGTGATTGAAGCTTATGGA+TGG 0.572510 3.1:+80589426 MS.gene48491:CDS
GGACCTGGAAAAGTCACTGC+AGG 0.573017 3.1:+80588601 MS.gene48491:CDS
GACGGAGCAATCGGAGAAGG+CGG 0.574794 3.1:-80588117 None:intergenic
TGAAGGTTTGAAGAATGTGT+TGG 0.575694 3.1:+80588275 MS.gene48491:CDS
TGGGGAAAGGTATTTACTGA+CGG 0.577303 3.1:+80589319 MS.gene48491:CDS
CTTACAGTGATGAATTTAGA+GGG 0.578231 3.1:-80588182 None:intergenic
CCGTAGACTATTTCGGTAGA+GGG 0.579428 3.1:-80588065 None:intergenic
AAACCCAGAAGCCTGAGAGA+AGG 0.580491 3.1:+80589918 MS.gene48491:CDS
CACAAAGGGATACTAACCAT+TGG 0.587521 3.1:-80589404 None:intergenic
CACCAATACTAGAAAACCAA+TGG 0.590719 3.1:+80589388 MS.gene48491:CDS
ATTGCAAGCTGCGTCTGAGG+GGG 0.592571 3.1:+80588543 MS.gene48491:CDS
TTCTTACGAGAAAGCTAAAG+CGG 0.594506 3.1:+80589884 MS.gene48491:CDS
AAGTGCGGAGAGATCGCTGG+TGG 0.596182 3.1:-80588039 None:intergenic
CACGTGGATGATGTAGTGGA+GGG 0.597809 3.1:+80589266 MS.gene48491:CDS
AAAAGGGACAAATTGGGGAA+AGG 0.597895 3.1:+80589306 MS.gene48491:CDS
TCACGTGGATGATGTAGTGG+AGG 0.604726 3.1:+80589265 MS.gene48491:CDS
TTACCTGGTTACATAGGCAA+AGG 0.607299 3.1:+80589221 MS.gene48491:CDS
CAGTCACGTGGATGATGTAG+TGG 0.608268 3.1:+80589262 MS.gene48491:CDS
TTCGGTAGAGGGAGGAAGTG+CGG 0.608399 3.1:-80588054 None:intergenic
TCAGCAATAGCTCCATCAGT+TGG 0.610570 3.1:-80588363 None:intergenic
AGCAATCGGAGAAGGCGGAG+AGG 0.611630 3.1:-80588112 None:intergenic
GAAAGGAATGAAGAAGGTTG+TGG 0.615924 3.1:+80587932 None:intergenic
TTTGAAGAATGTGTTGGAAG+CGG 0.617316 3.1:+80588281 MS.gene48491:CDS
TGTAACTCCCTCCACCGGCA+AGG 0.622930 3.1:+80587990 MS.gene48491:CDS
TAAGCTTCAATCACACACAA+AGG 0.625443 3.1:-80589419 None:intergenic
CCTGAGAGAAGGGCTTGCAG+AGG 0.625831 3.1:+80589929 MS.gene48491:CDS
GGCTTGCAGAGGTACTACTC+TGG 0.628949 3.1:+80589940 MS.gene48491:CDS
TGATGAATTTAGAGGGATCG+GGG 0.632493 3.1:-80588175 None:intergenic
GAGCCAGGGTTCAACGAGAG+CGG 0.635737 3.1:-80588153 None:intergenic
AGCGGCGAGGTGGAAGACGA+CGG 0.637580 3.1:-80588135 None:intergenic
GTTCAACGAGAGCGGCGAGG+TGG 0.638189 3.1:-80588145 None:intergenic
AGCTCTGTAACTCCCTCCAC+CGG 0.638268 3.1:+80587985 MS.gene48491:CDS
CACGGAGTATGAGAAATCAA+AGG 0.645350 3.1:+80588501 MS.gene48491:CDS
AGTTACAGAGCTTTCCACCA+AGG 0.655017 3.1:-80587974 None:intergenic
TGACGGAGTAACCTTGCCGG+TGG 0.655172 3.1:-80588001 None:intergenic
CCGGCAAGGTTACTCCGTCA+AGG 0.659151 3.1:+80588004 MS.gene48491:CDS
AGTGCGGAGAGATCGCTGGT+GGG 0.664599 3.1:-80588038 None:intergenic
CATTGCAAGCTGCGTCTGAG+GGG 0.665679 3.1:+80588542 MS.gene48491:CDS
TAGACTATTTCGGTAGAGGG+AGG 0.666208 3.1:-80588062 None:intergenic
AGGGTTCAACGAGAGCGGCG+AGG 0.708116 3.1:-80588148 None:intergenic
ACGTGGATGATGTAGTGGAG+GGG 0.712851 3.1:+80589267 MS.gene48491:CDS
GGTGAAGCAAACCAAGACAG+TGG 0.722877 3.1:+80588302 MS.gene48491:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTAAAAAAGCAAAAA+TGG - chr3.1:80588423-80588442 None:intergenic 10.0%
!! AATTGTAAAATAAAATTTCA+TGG + chr3.1:80589716-80589735 MS.gene48491:intron 10.0%
!! AAAAAAATCAAAATTTAGAG+CGG - chr3.1:80589119-80589138 None:intergenic 15.0%
!! AAATAAGATAGTATATGATT+TGG - chr3.1:80589547-80589566 None:intergenic 15.0%
!! GTTAATTAATTCAATCAATT+AGG + chr3.1:80588245-80588264 MS.gene48491:intron 15.0%
!! CATATCAAAAACTTGATTAA+AGG - chr3.1:80589357-80589376 None:intergenic 20.0%
!! GAATTAATTAACAGAATAAG+AGG - chr3.1:80588237-80588256 None:intergenic 20.0%
!! GTTAAACATTGAAACAAATT+TGG - chr3.1:80589623-80589642 None:intergenic 20.0%
!!! AAAAAGTGTTAATGAAAAAG+AGG + chr3.1:80590100-80590119 MS.gene48491:intron 20.0%
!!! AAAAGTGTTAATGAAAAAGA+GGG + chr3.1:80590101-80590120 MS.gene48491:intron 20.0%
!!! ATTCTTTTTAATTTTTCAGC+TGG + chr3.1:80589178-80589197 MS.gene48491:intron 20.0%
!!! CATAGAAGTGTAAAAATAAA+TGG + chr3.1:80589645-80589664 MS.gene48491:intron 20.0%
!!! CTTTAATCAAGTTTTTGATA+TGG + chr3.1:80589355-80589374 MS.gene48491:CDS 20.0%
!!! TCAGTTTTATCTCAATAAAT+GGG + chr3.1:80589745-80589764 MS.gene48491:intron 20.0%
!!! TTCAGTTTTATCTCAATAAA+TGG + chr3.1:80589744-80589763 MS.gene48491:intron 20.0%
! ACACAAAAAAAAATGAGAAC+AGG - chr3.1:80589816-80589835 None:intergenic 25.0%
! CACAAAAAAAAATGAGAACA+GGG - chr3.1:80589815-80589834 None:intergenic 25.0%
! GATTTAATGCATCTTTGTAT+TGG + chr3.1:80588729-80588748 MS.gene48491:intron 25.0%
! GGATAATCTTGAAACATAAA+AGG - chr3.1:80589684-80589703 None:intergenic 25.0%
! TAAATCCTAATTCGAAATGT+AGG + chr3.1:80588456-80588475 MS.gene48491:intron 25.0%
! TTAACAGAATAAGAGGATTA+AGG - chr3.1:80588230-80588249 None:intergenic 25.0%
!! AAAGTGTTAATGAAAAAGAG+GGG + chr3.1:80590102-80590121 MS.gene48491:intron 25.0%
!! ACTTAGTCTAAATCTAAAGT+TGG + chr3.1:80589072-80589091 MS.gene48491:intron 25.0%
!! TGTAACTTTTGCTAAAATCA+CGG - chr3.1:80588785-80588804 None:intergenic 25.0%
!!! AATGATCTACTACTTTTCAT+AGG + chr3.1:80589996-80590015 MS.gene48491:intron 25.0%
!!! ATGATCTACTACTTTTCATA+GGG + chr3.1:80589997-80590016 MS.gene48491:intron 25.0%
!!! TTATTTTACAATTGCCCATT+AGG - chr3.1:80589709-80589728 None:intergenic 25.0%
AAACATGCTTCAACAAAATC+AGG + chr3.1:80588880-80588899 MS.gene48491:intron 30.0%
AACATGCTTCAACAAAATCA+GGG + chr3.1:80588881-80588900 MS.gene48491:intron 30.0%
ACAGTGAATTTGCAAAATCA+CGG + chr3.1:80588820-80588839 MS.gene48491:intron 30.0%
ATGAACCTACATTTCGAATT+AGG - chr3.1:80588464-80588483 None:intergenic 30.0%
ATTGAAAATCAAAGTCCAGA+AGG - chr3.1:80589514-80589533 None:intergenic 30.0%
CTATGAAAAAGGGACAAATT+GGG + chr3.1:80589300-80589319 MS.gene48491:CDS 30.0%
CTTACAGTGATGAATTTAGA+GGG - chr3.1:80588185-80588204 None:intergenic 30.0%
GAGTTCTGTTATAACATGTA+TGG + chr3.1:80588952-80588971 MS.gene48491:intron 30.0%
TAGTGAGTTTCTTAGAATCA+AGG - chr3.1:80588853-80588872 None:intergenic 30.0%
TATGAAAAAGGGACAAATTG+GGG + chr3.1:80589301-80589320 MS.gene48491:CDS 30.0%
TCAAGATTATCCTTCCTAAT+GGG + chr3.1:80589692-80589711 MS.gene48491:intron 30.0%
TCTTACAGTGATGAATTTAG+AGG - chr3.1:80588186-80588205 None:intergenic 30.0%
TTCAAGATTATCCTTCCTAA+TGG + chr3.1:80589691-80589710 MS.gene48491:intron 30.0%
! ATTAAGGAGGATTTGAAATG+AGG - chr3.1:80588214-80588233 None:intergenic 30.0%
! TAAATTTTCATTCAGTCACG+TGG + chr3.1:80589250-80589269 MS.gene48491:CDS 30.0%
! TCATGAGAAATTTTTCTGCA+CGG + chr3.1:80588483-80588502 MS.gene48491:CDS 30.0%
! TTAAGGAGGATTTGAAATGA+GGG - chr3.1:80588213-80588232 None:intergenic 30.0%
! TTGTAACATCTAGTTTGAAG+TGG + chr3.1:80589137-80589156 MS.gene48491:intron 30.0%
!! TTCTTTTGAAAACTATCGCT+TGG - chr3.1:80589774-80589793 None:intergenic 30.0%
!!! AACCATTGGTTTTCTAGTAT+TGG - chr3.1:80589393-80589412 None:intergenic 30.0%
!!! TGTTTTAACATTGAACCAGA+CGG + chr3.1:80589833-80589852 MS.gene48491:intron 30.0%
AAGCTTCAATCACACACAAA+GGG - chr3.1:80589421-80589440 None:intergenic 35.0%
ACAGAATAAGAGGATTAAGG+AGG - chr3.1:80588227-80588246 None:intergenic 35.0%
AGATCATCTAATGCAGTAGT+AGG + chr3.1:80588699-80588718 MS.gene48491:intron 35.0%
AGTGATGAATTTAGAGGGAT+CGG - chr3.1:80588180-80588199 None:intergenic 35.0%
ATCAATTAGGTCAACGTTGA+AGG + chr3.1:80588258-80588277 MS.gene48491:intron 35.0%
CACATTGCTGCTATGAAAAA+GGG + chr3.1:80589290-80589309 MS.gene48491:CDS 35.0%
CACCAATACTAGAAAACCAA+TGG + chr3.1:80589388-80589407 MS.gene48491:CDS 35.0%
CTTTATCCTGGCGTAATTTA+TGG + chr3.1:80588580-80588599 MS.gene48491:CDS 35.0%
GAACTCTCTAAGTGTATGTA+TGG - chr3.1:80588938-80588957 None:intergenic 35.0%
GCAAAAGTTACATGCATCTT+TGG + chr3.1:80588793-80588812 MS.gene48491:intron 35.0%
GCTATGAAAAAGGGACAAAT+TGG + chr3.1:80589299-80589318 MS.gene48491:CDS 35.0%
TAAGCTTCAATCACACACAA+AGG - chr3.1:80589422-80589441 None:intergenic 35.0%
TAAGTGTATGTATGGATGAG+TGG - chr3.1:80588930-80588949 None:intergenic 35.0%
TAATGCAGTAGTAGGATAGT+TGG + chr3.1:80588707-80588726 MS.gene48491:intron 35.0%
TGAAGGTTTGAAGAATGTGT+TGG + chr3.1:80588275-80588294 MS.gene48491:CDS 35.0%
TGAATTTGCAAAATCACGGT+GGG + chr3.1:80588824-80588843 MS.gene48491:intron 35.0%
TTCTTACGAGAAAGCTAAAG+CGG + chr3.1:80589884-80589903 MS.gene48491:CDS 35.0%
TTGTGTGTGATTGAAGCTTA+TGG + chr3.1:80589422-80589441 MS.gene48491:CDS 35.0%
TTTACAATTGCCCATTAGGA+AGG - chr3.1:80589705-80589724 None:intergenic 35.0%
TTTGAAGAATGTGTTGGAAG+CGG + chr3.1:80588281-80588300 MS.gene48491:CDS 35.0%
! AAATCTAAAGTTGGAACAGC+CGG + chr3.1:80589081-80589100 MS.gene48491:intron 35.0%
! AACTTTTGCTAAAATCACGG+TGG - chr3.1:80588782-80588801 None:intergenic 35.0%
!! GTTTTAATCTCTCGAATCAC+TGG + chr3.1:80589455-80589474 MS.gene48491:CDS 35.0%
!!! GCATGTTTTAAGACATCGTT+GGG + chr3.1:80589857-80589876 MS.gene48491:CDS 35.0%
!!! TGCATGTTTTAAGACATCGT+TGG + chr3.1:80589856-80589875 MS.gene48491:CDS 35.0%
AAAAGGGACAAATTGGGGAA+AGG + chr3.1:80589306-80589325 MS.gene48491:CDS 40.0%
AACAAGTTTCTCCACTGTCT+TGG - chr3.1:80588316-80588335 None:intergenic 40.0%
ACTACTCTGGTTGAAGAACT+TGG + chr3.1:80589953-80589972 MS.gene48491:CDS 40.0%
AGGAAACGTTCTTGCAAAGA+TGG + chr3.1:80588621-80588640 MS.gene48491:CDS 40.0%
AGTGGTTAGCGACAAAATCA+CGG - chr3.1:80588912-80588931 None:intergenic 40.0%
CACAAAGGGATACTAACCAT+TGG - chr3.1:80589407-80589426 None:intergenic 40.0%
CACGGAGTATGAGAAATCAA+AGG + chr3.1:80588501-80588520 MS.gene48491:CDS 40.0%
CCAGGATAAAGCAACACTAT+TGG - chr3.1:80588571-80588590 None:intergenic 40.0%
CTACTCTGGTTGAAGAACTT+GGG + chr3.1:80589954-80589973 MS.gene48491:CDS 40.0%
GCACATTGCTGCTATGAAAA+AGG + chr3.1:80589289-80589308 MS.gene48491:CDS 40.0%
GGAGAGGAGTGATGAAAAAT+CGG - chr3.1:80588099-80588118 None:intergenic 40.0%
GGTAGATTACCTGGTTACAT+AGG + chr3.1:80589215-80589234 MS.gene48491:CDS 40.0%
GTGAATTTGCAAAATCACGG+TGG + chr3.1:80588823-80588842 MS.gene48491:intron 40.0%
GTGATGAATTTAGAGGGATC+GGG - chr3.1:80588179-80588198 None:intergenic 40.0%
GTGTGATTGAAGCTTATGGA+TGG + chr3.1:80589426-80589445 MS.gene48491:CDS 40.0%
TGATGAATTTAGAGGGATCG+GGG - chr3.1:80588178-80588197 None:intergenic 40.0%
TTACCTGGTTACATAGGCAA+AGG + chr3.1:80589221-80589240 MS.gene48491:CDS 40.0%
TTTCCTTTGCCTATGTAACC+AGG - chr3.1:80589227-80589246 None:intergenic 40.0%
! AATCTAAAGTTGGAACAGCC+GGG + chr3.1:80589082-80589101 MS.gene48491:intron 40.0%
! ATGCATCTTTGTATTGGCAG+CGG + chr3.1:80588735-80588754 MS.gene48491:intron 40.0%
! GTTACCTTTTATCAGTCCAC+CGG + chr3.1:80589481-80589500 MS.gene48491:CDS 40.0%
!! CCAATAGTGTTGCTTTATCC+TGG + chr3.1:80588568-80588587 MS.gene48491:CDS 40.0%
!! CGTTTTAGTGGTAGATTACC+TGG + chr3.1:80589206-80589225 MS.gene48491:CDS 40.0%
!! TGGGGAAAGGTATTTACTGA+CGG + chr3.1:80589319-80589338 MS.gene48491:CDS 40.0%
AAGTCCAGAAGGAAGCTTAC+CGG - chr3.1:80589503-80589522 None:intergenic 45.0%
AGTTACAGAGCTTTCCACCA+AGG - chr3.1:80587977-80587996 None:intergenic 45.0%
ATGAAGAAGGTTGTGGTGAC+CGG + chr3.1:80587939-80587958 MS.gene48491:CDS 45.0%
CCCTCTACCGAAATAGTCTA+CGG + chr3.1:80588065-80588084 MS.gene48491:CDS 45.0%
CCGTAGACTATTTCGGTAGA+GGG - chr3.1:80588068-80588087 None:intergenic 45.0%
CTGGTTGAAGAACTTGGGAT+TGG + chr3.1:80589959-80589978 MS.gene48491:CDS 45.0%
GATGTCGCCGTAGACTATTT+CGG - chr3.1:80588075-80588094 None:intergenic 45.0%
GCTTTGTAACACGAGTCAAG+TGG - chr3.1:80588991-80589010 None:intergenic 45.0%
GTCTTAAAACATGCACCGTC+TGG - chr3.1:80589851-80589870 None:intergenic 45.0%
TAGACTATTTCGGTAGAGGG+AGG - chr3.1:80588065-80588084 None:intergenic 45.0%
TCAGCAATAGCTCCATCAGT+TGG - chr3.1:80588366-80588385 None:intergenic 45.0%
TTTGCTCTTGGACCAACTGA+TGG + chr3.1:80588351-80588370 MS.gene48491:CDS 45.0%
! CAGCTGGTAGAACGTTTTAG+TGG + chr3.1:80589194-80589213 MS.gene48491:intron 45.0%
! TGCATCTTTGTATTGGCAGC+GGG + chr3.1:80588736-80588755 MS.gene48491:intron 45.0%
! TTTCCTGCAGTGACTTTTCC+AGG - chr3.1:80588607-80588626 None:intergenic 45.0%
!! CTTACCGGTGGACTGATAAA+AGG - chr3.1:80589488-80589507 None:intergenic 45.0%
!! GGGGAAAGGTATTTACTGAC+GGG + chr3.1:80589320-80589339 MS.gene48491:CDS 45.0%
!!! ACGTCGTCGTTTTTTGCTCT+TGG + chr3.1:80588339-80588358 MS.gene48491:CDS 45.0%
AAACCCAGAAGCCTGAGAGA+AGG + chr3.1:80589918-80589937 MS.gene48491:CDS 50.0%
AACCCAGAAGCCTGAGAGAA+GGG + chr3.1:80589919-80589938 MS.gene48491:CDS 50.0%
CAGTCACGTGGATGATGTAG+TGG + chr3.1:80589262-80589281 MS.gene48491:CDS 50.0%
CCAGGTCCATAAATTACGCC+AGG - chr3.1:80588589-80588608 None:intergenic 50.0%
CCTGGCGTAATTTATGGACC+TGG + chr3.1:80588586-80588605 MS.gene48491:CDS 50.0%
GAGCTTTCCACCAAGGTAAC+CGG - chr3.1:80587970-80587989 None:intergenic 50.0%
GCCGTAGACTATTTCGGTAG+AGG - chr3.1:80588069-80588088 None:intergenic 50.0%
GGGTCTGACTATGACCTTGA+CGG - chr3.1:80588021-80588040 None:intergenic 50.0%
GGTGAAGCAAACCAAGACAG+TGG + chr3.1:80588302-80588321 MS.gene48491:CDS 50.0%
GGTTAGCGACAAAATCACGG+TGG - chr3.1:80588909-80588928 None:intergenic 50.0%
TCACGTGGATGATGTAGTGG+AGG + chr3.1:80589265-80589284 MS.gene48491:CDS 50.0%
! ACGTGGATGATGTAGTGGAG+GGG + chr3.1:80589267-80589286 MS.gene48491:CDS 50.0%
! CACGTGGATGATGTAGTGGA+GGG + chr3.1:80589266-80589285 MS.gene48491:CDS 50.0%
AAGCCCTTCTCTCAGGCTTC+TGG - chr3.1:80589925-80589944 None:intergenic 55.0%
ACCAAGGTAACCGGATGCAC+CGG - chr3.1:80587961-80587980 None:intergenic 55.0%
AGAGCGGCAGTATGATGTCC+CGG - chr3.1:80589103-80589122 None:intergenic 55.0%
AGCCCTTCTCTCAGGCTTCT+GGG - chr3.1:80589924-80589943 None:intergenic 55.0%
AGCTCTGTAACTCCCTCCAC+CGG + chr3.1:80587985-80588004 MS.gene48491:CDS 55.0%
ATTGCAAGCTGCGTCTGAGG+GGG + chr3.1:80588543-80588562 MS.gene48491:CDS 55.0%
CATTGCAAGCTGCGTCTGAG+GGG + chr3.1:80588542-80588561 MS.gene48491:CDS 55.0%
CCTTGACGGAGTAACCTTGC+CGG - chr3.1:80588007-80588026 None:intergenic 55.0%
GCATTGCAAGCTGCGTCTGA+GGG + chr3.1:80588541-80588560 MS.gene48491:CDS 55.0%
GGACCTGGAAAAGTCACTGC+AGG + chr3.1:80588601-80588620 MS.gene48491:CDS 55.0%
GTGGAAGACGACGGAGCAAT+CGG - chr3.1:80588129-80588148 None:intergenic 55.0%
TCCACCGGTAAGCTTCCTTC+TGG + chr3.1:80589496-80589515 MS.gene48491:intron 55.0%
TCCAGAAGGAAGCTTACCGG+TGG - chr3.1:80589500-80589519 None:intergenic 55.0%
TGCATTGCAAGCTGCGTCTG+AGG + chr3.1:80588540-80588559 MS.gene48491:CDS 55.0%
TTCGGTAGAGGGAGGAAGTG+CGG - chr3.1:80588057-80588076 None:intergenic 55.0%
!! GGCTTGCAGAGGTACTACTC+TGG + chr3.1:80589940-80589959 MS.gene48491:CDS 55.0%
AAGTGCGGAGAGATCGCTGG+TGG - chr3.1:80588042-80588061 None:intergenic 60.0%
ACCGGTGCATCCGGTTACCT+TGG + chr3.1:80587957-80587976 MS.gene48491:CDS 60.0%
AGCAATCGGAGAAGGCGGAG+AGG - chr3.1:80588115-80588134 None:intergenic 60.0%
AGTGCGGAGAGATCGCTGGT+GGG - chr3.1:80588041-80588060 None:intergenic 60.0%
CCGGCAAGGTTACTCCGTCA+AGG + chr3.1:80588004-80588023 MS.gene48491:CDS 60.0%
CCTCTGCAAGCCCTTCTCTC+AGG - chr3.1:80589932-80589951 None:intergenic 60.0%
CCTGAGAGAAGGGCTTGCAG+AGG + chr3.1:80589929-80589948 MS.gene48491:CDS 60.0%
GACGACGGAGCAATCGGAGA+AGG - chr3.1:80588123-80588142 None:intergenic 60.0%
GACGGAGCAATCGGAGAAGG+CGG - chr3.1:80588120-80588139 None:intergenic 60.0%
GAGCCAGGGTTCAACGAGAG+CGG - chr3.1:80588156-80588175 None:intergenic 60.0%
GGAGTAACCTTGCCGGTGGA+GGG - chr3.1:80588000-80588019 None:intergenic 60.0%
GGTGCATCCGGTTACCTTGG+TGG + chr3.1:80587960-80587979 MS.gene48491:CDS 60.0%
GTTGTGGTGACCGGTGCATC+CGG + chr3.1:80587948-80587967 MS.gene48491:CDS 60.0%
TGACGGAGTAACCTTGCCGG+TGG - chr3.1:80588004-80588023 None:intergenic 60.0%
TGTAACTCCCTCCACCGGCA+AGG + chr3.1:80587990-80588009 MS.gene48491:CDS 60.0%
TTAGAGGGATCGGGGAGCCA+GGG - chr3.1:80588170-80588189 None:intergenic 60.0%
TTTAGAGGGATCGGGGAGCC+AGG - chr3.1:80588171-80588190 None:intergenic 60.0%
! AGGAAGTGCGGAGAGATCGC+TGG - chr3.1:80588045-80588064 None:intergenic 60.0%
AGCGGCGAGGTGGAAGACGA+CGG - chr3.1:80588138-80588157 None:intergenic 65.0%
AGGGTTCAACGAGAGCGGCG+AGG - chr3.1:80588151-80588170 None:intergenic 65.0%
CGGAGTAACCTTGCCGGTGG+AGG - chr3.1:80588001-80588020 None:intergenic 65.0%
GTTCAACGAGAGCGGCGAGG+TGG - chr3.1:80588148-80588167 None:intergenic 65.0%
TCGCCGCTCTCGTTGAACCC+TGG + chr3.1:80588150-80588169 MS.gene48491:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 80587939 80590185 80587939 ID=MS.gene48491
chr3.1 mRNA 80587939 80590185 80587939 ID=MS.gene48491.t1;Parent=MS.gene48491
chr3.1 exon 80587939 80588199 80587939 ID=MS.gene48491.t1.exon1;Parent=MS.gene48491.t1
chr3.1 CDS 80587939 80588199 80587939 ID=cds.MS.gene48491.t1;Parent=MS.gene48491.t1
chr3.1 exon 80588267 80588395 80588267 ID=MS.gene48491.t1.exon2;Parent=MS.gene48491.t1
chr3.1 CDS 80588267 80588395 80588267 ID=cds.MS.gene48491.t1;Parent=MS.gene48491.t1
chr3.1 exon 80588478 80588642 80588478 ID=MS.gene48491.t1.exon3;Parent=MS.gene48491.t1
chr3.1 CDS 80588478 80588642 80588478 ID=cds.MS.gene48491.t1;Parent=MS.gene48491.t1
chr3.1 exon 80589197 80589502 80589197 ID=MS.gene48491.t1.exon4;Parent=MS.gene48491.t1
chr3.1 CDS 80589197 80589502 80589197 ID=cds.MS.gene48491.t1;Parent=MS.gene48491.t1
chr3.1 exon 80589852 80589980 80589852 ID=MS.gene48491.t1.exon5;Parent=MS.gene48491.t1
chr3.1 CDS 80589852 80589980 80589852 ID=cds.MS.gene48491.t1;Parent=MS.gene48491.t1
chr3.1 exon 80590150 80590185 80590150 ID=MS.gene48491.t1.exon6;Parent=MS.gene48491.t1
chr3.1 CDS 80590150 80590185 80590150 ID=cds.MS.gene48491.t1;Parent=MS.gene48491.t1
Gene Sequence

>MS.gene48491

ATGAAGAAGGTTGTGGTGACCGGTGCATCCGGTTACCTTGGTGGAAAGCTCTGTAACTCCCTCCACCGGCAAGGTTACTCCGTCAAGGTCATAGTCAGACCCACCAGCGATCTCTCCGCACTTCCTCCCTCTACCGAAATAGTCTACGGCGACATCACCGATTTTTCATCACTCCTCTCCGCCTTCTCCGATTGCTCCGTCGTCTTCCACCTCGCCGCTCTCGTTGAACCCTGGCTCCCCGATCCCTCTAAATTCATCACTGTAAGATTCTCCCTCATTTCAAATCCTCCTTAATCCTCTTATTCTGTTAATTAATTCAATCAATTAGGTCAACGTTGAAGGTTTGAAGAATGTGTTGGAAGCGGTGAAGCAAACCAAGACAGTGGAGAAACTTGTTTATACGTCGTCGTTTTTTGCTCTTGGACCAACTGATGGAGCTATTGCTGATGAGAATCAAGTACAATACATCAAATCAATACTTCCATTTTTGCTTTTTTAATTTTTTTTGTTTTTCTTCTAAATCCTAATTCGAAATGTAGGTTCATCATGAGAAATTTTTCTGCACGGAGTATGAGAAATCAAAGGTTGCTACTGATAAAATTGCATTGCAAGCTGCGTCTGAGGGGGTGCCAATAGTGTTGCTTTATCCTGGCGTAATTTATGGACCTGGAAAAGTCACTGCAGGAAACGTTCTTGCAAAGATGGTACTGTTTTATTTCTTCTTGTGTCTTCTGTTTTCTCATATGTTAATTTTGAAATTAGATCATCTAATGCAGTAGTAGGATAGTTGGATTTAATGCATCTTTGTATTGGCAGCGGGATTGTTAGAATCAGAGTGAACCACCGTGATTTTAGCAAAAGTTACATGCATCTTTGGTATCACAGTGAATTTGCAAAATCACGGTGGGTGACCTTGATTCTAAGAAACTCACTACGATATCAAACATGCTTCAACAAAATCAGGGTGCCACCGTGATTTTGTCGCTAACCACTCATCCATACATACACTTAGAGAGTTCTGTTATAACATGTATGGATACGCGCTGATTCCACTTGACTCGTGTTACAAAGCTGCTGTATGTTTGAAGCAATAAAGTATAGCTTTGAGTTAACGCACGTTGAAGTTTGTTTTCACTTAGTCTAAATCTAAAGTTGGAACAGCCGGGACATCATACTGCCGCTCTAAATTTTGATTTTTTTGTAACATCTAGTTTGAAGTGGAAATGTTGTTTGATATTTATTCTTTTTAATTTTTCAGCTGGTAGAACGTTTTAGTGGTAGATTACCTGGTTACATAGGCAAAGGAAATGATAAATTTTCATTCAGTCACGTGGATGATGTAGTGGAGGGGCACATTGCTGCTATGAAAAAGGGACAAATTGGGGAAAGGTATTTACTGACGGGTGAAAATGCGTCCTTTAATCAAGTTTTTGATATGGCTGCTGTGATCACCAATACTAGAAAACCAATGGTTAGTATCCCTTTGTGTGTGATTGAAGCTTATGGATGGTTGTTAGTTTTAATCTCTCGAATCACTGGAAAGTTACCTTTTATCAGTCCACCGGTAAGCTTCCTTCTGGACTTTGATTTTCAATTTTCATGCATCCAAATCATATACTATCTTATTTTTATCAGAAATTTTTAGCTGACAAATTGATATCTCAGTTAAAAATTTTGTAGACCAAATTTGTTTCAATGTTTAACTGCATAGAAGTGTAAAAATAAATGGCTAAACAAAAAATCCTTTTATGTTTCAAGATTATCCTTCCTAATGGGCAATTGTAAAATAAAATTTCATGGACAAATTCAGTTTTATCTCAATAAATGGGAAACCAAGCGATAGTTTTCAAAAGAAAATAAAGCATATTATCTTCCCTGTTCTCATTTTTTTTTGTGTTTTAACATTGAACCAGACGGTGCATGTTTTAAGACATCGTTGGGAGTATTCTTACGAGAAAGCTAAAGCGGAGCTAGATTATAAACCCAGAAGCCTGAGAGAAGGGCTTGCAGAGGTACTACTCTGGTTGAAGAACTTGGGATTGGTAAAATATTAGCGAAATGATCTACTACTTTTCATAGGGCTTCACTTTTCGCATGATCTATAACACTATTGTAAATTGTCAAAAAAAAAGTGTTATAAAAATACAATCAGCAATACAAGAAAAAGTGTTAATGAAAAAGAGGGGACTAGCTATTTTGTTGACACTGTAGCTAATGTATGAGATGCTGCATTTACTTGTCTCTTGA

Protein sequence

>MS.gene48491.t1

MKKVVVTGASGYLGGKLCNSLHRQGYSVKVIVRPTSDLSALPPSTEIVYGDITDFSSLLSAFSDCSVVFHLAALVEPWLPDPSKFITVNVEGLKNVLEAVKQTKTVEKLVYTSSFFALGPTDGAIADENQVHHEKFFCTEYEKSKVATDKIALQAASEGVPIVLLYPGVIYGPGKVTAGNVLAKMLVERFSGRLPGYIGKGNDKFSFSHVDDVVEGHIAAMKKGQIGERYLLTGENASFNQVFDMAAVITNTRKPMVSIPLCVIEAYGWLLVLISRITGKLPFISPPTVHVLRHRWEYSYEKAKAELDYKPRSLREGLAEVLLWLKNLGLLMYEMLHLLVS