Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38726.t1 | XP_003603023.1 | 97 | 333 | 10 | 0 | 1 | 333 | 1 | 333 | 2.60E-182 | 647.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38726.t1 | P51108 | 26.4 | 280 | 173 | 10 | 4 | 260 | 13 | 282 | 1.5e-13 | 78.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38726.t1 | G7J6B7 | 97.0 | 333 | 10 | 0 | 1 | 333 | 1 | 333 | 1.9e-182 | 647.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene054632 | MS.gene38726 | 0.829381 | 5.31E-55 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene38726 | MS.gene000616 | PPI |
MS.gene38726 | MS.gene063452 | PPI |
MS.gene38726 | MS.gene039215 | PPI |
MS.gene86994 | MS.gene38726 | PPI |
MS.gene85957 | MS.gene38726 | PPI |
MS.gene38726 | MS.gene068659 | PPI |
MS.gene38726 | MS.gene034244 | PPI |
MS.gene38726 | MS.gene067468 | PPI |
MS.gene38726 | MS.gene053218 | PPI |
MS.gene38726 | MS.gene83592 | PPI |
MS.gene38726 | MS.gene062821 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38726.t1 | MTR_3g101500 | 96.997 | 333 | 10 | 0 | 1 | 333 | 1 | 333 | 0.0 | 663 |
MS.gene38726.t1 | MTR_3g101500 | 94.649 | 299 | 16 | 0 | 1 | 299 | 1 | 299 | 0.0 | 579 |
MS.gene38726.t1 | MTR_3g101500 | 95.263 | 190 | 9 | 0 | 1 | 190 | 1 | 190 | 5.52e-129 | 367 |
MS.gene38726.t1 | MTR_3g105440 | 26.361 | 349 | 220 | 14 | 5 | 322 | 10 | 352 | 6.08e-18 | 85.1 |
MS.gene38726.t1 | MTR_3g105440 | 26.124 | 356 | 212 | 14 | 5 | 322 | 10 | 352 | 6.42e-18 | 84.7 |
MS.gene38726.t1 | MTR_7g074820 | 26.667 | 285 | 171 | 9 | 3 | 260 | 7 | 280 | 5.61e-16 | 77.8 |
MS.gene38726.t1 | MTR_1g022445 | 26.882 | 279 | 173 | 11 | 4 | 260 | 8 | 277 | 8.99e-16 | 77.4 |
MS.gene38726.t1 | MTR_1g022440 | 26.071 | 280 | 174 | 11 | 4 | 260 | 8 | 277 | 4.15e-15 | 75.5 |
MS.gene38726.t1 | MTR_7g074850 | 26.074 | 326 | 197 | 11 | 3 | 302 | 7 | 314 | 4.38e-15 | 75.5 |
MS.gene38726.t1 | MTR_7g074710 | 27.273 | 253 | 151 | 9 | 3 | 230 | 7 | 251 | 1.06e-14 | 74.3 |
MS.gene38726.t1 | MTR_4g081440 | 24.014 | 279 | 178 | 10 | 3 | 250 | 23 | 298 | 9.68e-14 | 71.6 |
MS.gene38726.t1 | MTR_4g081440 | 24.014 | 279 | 178 | 10 | 3 | 250 | 19 | 294 | 1.10e-13 | 71.2 |
MS.gene38726.t1 | MTR_7g074880 | 25.263 | 285 | 172 | 10 | 3 | 260 | 7 | 277 | 1.33e-13 | 70.9 |
MS.gene38726.t1 | MTR_4g077130 | 25.806 | 279 | 178 | 7 | 2 | 260 | 7 | 276 | 1.80e-13 | 70.5 |
MS.gene38726.t1 | MTR_4g077100 | 25.180 | 278 | 181 | 9 | 2 | 260 | 9 | 278 | 3.34e-13 | 69.3 |
MS.gene38726.t1 | MTR_7g117190 | 26.552 | 290 | 148 | 15 | 3 | 242 | 6 | 280 | 5.29e-13 | 69.3 |
MS.gene38726.t1 | MTR_7g117190 | 26.552 | 290 | 148 | 15 | 3 | 242 | 6 | 280 | 6.03e-13 | 68.9 |
MS.gene38726.t1 | MTR_4g077100 | 24.820 | 278 | 182 | 9 | 2 | 260 | 9 | 278 | 6.15e-13 | 68.9 |
MS.gene38726.t1 | MTR_0034s0060 | 24.280 | 243 | 169 | 6 | 2 | 230 | 137 | 378 | 7.60e-13 | 69.7 |
MS.gene38726.t1 | MTR_4g009040 | 26.705 | 352 | 199 | 14 | 2 | 332 | 11 | 324 | 9.84e-13 | 68.6 |
MS.gene38726.t1 | MTR_2g073240 | 23.868 | 243 | 170 | 6 | 2 | 230 | 19 | 260 | 1.18e-12 | 69.3 |
MS.gene38726.t1 | MTR_2g028620 | 29.020 | 255 | 144 | 13 | 4 | 231 | 10 | 254 | 1.22e-12 | 68.2 |
MS.gene38726.t1 | MTR_2g028620 | 29.020 | 255 | 144 | 13 | 4 | 231 | 10 | 254 | 1.27e-12 | 68.2 |
MS.gene38726.t1 | MTR_4g009040 | 26.404 | 356 | 199 | 14 | 2 | 332 | 11 | 328 | 3.11e-12 | 67.0 |
MS.gene38726.t1 | MTR_8g062110 | 26.295 | 251 | 159 | 8 | 2 | 232 | 7 | 251 | 5.44e-12 | 65.9 |
MS.gene38726.t1 | MTR_8g062110 | 26.295 | 251 | 159 | 8 | 2 | 232 | 7 | 251 | 6.85e-12 | 65.5 |
MS.gene38726.t1 | MTR_5g072620 | 27.200 | 250 | 157 | 8 | 2 | 231 | 3 | 247 | 8.83e-12 | 65.5 |
MS.gene38726.t1 | MTR_8g062110 | 26.295 | 251 | 159 | 8 | 2 | 232 | 7 | 251 | 1.20e-11 | 65.1 |
MS.gene38726.t1 | MTR_8g062110 | 26.295 | 251 | 159 | 8 | 2 | 232 | 16 | 260 | 1.26e-11 | 65.1 |
MS.gene38726.t1 | MTR_4g009690 | 27.635 | 351 | 196 | 13 | 2 | 332 | 11 | 323 | 2.98e-11 | 63.9 |
MS.gene38726.t1 | MTR_2g013250 | 25.806 | 279 | 163 | 13 | 3 | 242 | 6 | 279 | 5.22e-11 | 63.2 |
MS.gene38726.t1 | MTR_4g009690 | 27.887 | 355 | 191 | 14 | 2 | 332 | 11 | 324 | 5.41e-11 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38726.t1 | AT4G33360 | 70.393 | 331 | 98 | 0 | 3 | 333 | 14 | 344 | 0.0 | 507 |
MS.gene38726.t1 | AT4G33360 | 70.938 | 320 | 93 | 0 | 3 | 322 | 2 | 321 | 1.70e-176 | 492 |
MS.gene38726.t1 | AT4G33360 | 71.228 | 285 | 82 | 0 | 3 | 287 | 14 | 298 | 5.88e-158 | 444 |
MS.gene38726.t1 | AT1G09490 | 31.818 | 264 | 155 | 8 | 2 | 245 | 6 | 264 | 2.95e-23 | 98.6 |
MS.gene38726.t1 | AT1G09480 | 29.924 | 264 | 160 | 8 | 2 | 245 | 6 | 264 | 9.64e-22 | 94.4 |
MS.gene38726.t1 | AT1G09480 | 29.924 | 264 | 160 | 8 | 2 | 245 | 53 | 311 | 1.57e-21 | 94.4 |
MS.gene38726.t1 | AT1G09510 | 30.798 | 263 | 153 | 10 | 2 | 242 | 6 | 261 | 3.32e-20 | 90.1 |
MS.gene38726.t1 | AT1G61720 | 27.509 | 269 | 170 | 6 | 2 | 245 | 11 | 279 | 2.83e-18 | 84.7 |
MS.gene38726.t1 | AT1G09490 | 30.918 | 207 | 127 | 6 | 50 | 245 | 32 | 233 | 5.93e-17 | 80.5 |
MS.gene38726.t1 | AT5G58490 | 30.085 | 236 | 138 | 8 | 4 | 218 | 9 | 238 | 1.84e-14 | 73.6 |
MS.gene38726.t1 | AT1G66800 | 26.744 | 258 | 166 | 7 | 2 | 242 | 6 | 257 | 2.46e-14 | 73.2 |
MS.gene38726.t1 | AT5G19440 | 26.836 | 354 | 202 | 14 | 2 | 333 | 8 | 326 | 3.69e-14 | 72.8 |
MS.gene38726.t1 | AT1G09500 | 28.516 | 256 | 153 | 9 | 2 | 234 | 6 | 254 | 4.16e-14 | 72.0 |
MS.gene38726.t1 | AT2G45400 | 26.736 | 288 | 169 | 11 | 4 | 260 | 40 | 316 | 5.10e-14 | 72.4 |
MS.gene38726.t1 | AT2G02400 | 26.459 | 257 | 168 | 9 | 2 | 241 | 4 | 256 | 6.46e-14 | 72.0 |
MS.gene38726.t1 | AT1G09500 | 28.516 | 256 | 153 | 9 | 2 | 234 | 6 | 254 | 7.49e-14 | 71.6 |
MS.gene38726.t1 | AT2G45400 | 26.102 | 295 | 176 | 12 | 4 | 267 | 40 | 323 | 8.42e-14 | 72.0 |
MS.gene38726.t1 | AT1G53500 | 25.514 | 243 | 166 | 6 | 2 | 230 | 9 | 250 | 1.91e-13 | 71.6 |
MS.gene38726.t1 | AT1G51410 | 28.195 | 266 | 162 | 9 | 2 | 245 | 7 | 265 | 7.81e-13 | 68.9 |
MS.gene38726.t1 | AT2G33590 | 28.346 | 254 | 153 | 11 | 3 | 234 | 8 | 254 | 1.03e-12 | 68.2 |
MS.gene38726.t1 | AT2G23910 | 25.899 | 278 | 170 | 10 | 4 | 260 | 10 | 272 | 1.43e-12 | 67.4 |
MS.gene38726.t1 | AT2G23910 | 25.899 | 278 | 170 | 10 | 4 | 260 | 10 | 272 | 1.46e-12 | 67.4 |
MS.gene38726.t1 | AT2G23910 | 25.899 | 278 | 170 | 10 | 4 | 260 | 10 | 272 | 2.18e-12 | 67.4 |
MS.gene38726.t1 | AT5G14700 | 29.082 | 196 | 112 | 8 | 4 | 173 | 55 | 249 | 1.43e-11 | 64.7 |
MS.gene38726.t1 | AT5G14700 | 29.082 | 196 | 112 | 8 | 4 | 173 | 55 | 249 | 3.20e-11 | 64.3 |
MS.gene38726.t1 | AT1G80820 | 29.435 | 248 | 150 | 10 | 2 | 232 | 6 | 245 | 6.33e-11 | 62.4 |
Find 91 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTTATCCTGGGGTAATTTA+TGG | 0.110220 | 3.3:+84078748 | MS.gene38726:CDS |
AAGCCCTTCTCTCAGGCTTC+TGG | 0.219625 | 3.3:-84080089 | None:intergenic |
GCACATTGCTGCTATGAAAA+AGG | 0.255767 | 3.3:+84079455 | MS.gene38726:CDS |
TTGTGTGTGATTGAAGCTTA+TGG | 0.293479 | 3.3:+84079588 | MS.gene38726:CDS |
CCAATAGTGTTGCTTTATCC+TGG | 0.298721 | 3.3:+84078736 | MS.gene38726:CDS |
CTTACCGGTGGACTGATAAA+AGG | 0.344492 | 3.3:-84079651 | None:intergenic |
AGCCCTTCTCTCAGGCTTCT+GGG | 0.368707 | 3.3:-84080088 | None:intergenic |
ATTACTCTGGTTGAAGAACT+TGG | 0.390223 | 3.3:+84080120 | MS.gene38726:CDS |
TTTAGAGGGATCGGGGAGCC+AGG | 0.391159 | 3.3:-84078325 | None:intergenic |
TTTGCTCTTGGACCAACTGA+TGG | 0.422894 | 3.3:+84078521 | MS.gene38726:CDS |
CAATAGTGTTGCTTTATCCT+GGG | 0.434363 | 3.3:+84078737 | MS.gene38726:CDS |
TGAAATTAGGTCAACGTTGA+AGG | 0.442193 | 3.3:+84078428 | MS.gene38726:intron |
GAGCTTTCCACCAAGGTAAC+CGG | 0.454097 | 3.3:-84078124 | None:intergenic |
AACAAGTTTCTCCACTGTCT+TGG | 0.460174 | 3.3:-84078483 | None:intergenic |
CCTTGACGGAGTAACCTTGC+CGG | 0.465146 | 3.3:-84078161 | None:intergenic |
CCAGGATAAAGCAACACTAT+TGG | 0.469005 | 3.3:-84078736 | None:intergenic |
GTGGAAGACGACGGAGCAAT+CGG | 0.472753 | 3.3:-84078283 | None:intergenic |
GTTGTGGTGACCGGTGCATC+CGG | 0.479262 | 3.3:+84078105 | MS.gene38726:CDS |
CCTGGGGTAATTTATGGACC+TGG | 0.479761 | 3.3:+84078754 | MS.gene38726:CDS |
GTGATGAATTTAGAGGGATC+GGG | 0.481282 | 3.3:-84078333 | None:intergenic |
TCCTACAGTGATGAATTTAG+AGG | 0.485890 | 3.3:-84078340 | None:intergenic |
ACCGGTGCATCCGGTTACCT+TGG | 0.487879 | 3.3:+84078114 | MS.gene38726:CDS |
TGCATTGCAAGCTGCGTCTG+AGG | 0.495160 | 3.3:+84078708 | MS.gene38726:CDS |
CGGAGTAACCTTGCCGGTGG+AGG | 0.498534 | 3.3:-84078155 | None:intergenic |
CCTCTGCAAGCCCTTCTCTC+AGG | 0.502858 | 3.3:-84080096 | None:intergenic |
AGTGATGAATTTAGAGGGAT+CGG | 0.503641 | 3.3:-84078334 | None:intergenic |
GACGACGGAGCAATCGGAGA+AGG | 0.508216 | 3.3:-84078277 | None:intergenic |
CTGGTTGAAGAACTTGGGAT+TGG | 0.511734 | 3.3:+84080126 | MS.gene38726:CDS |
GCATTGCAAGCTGCGTCTGA+GGG | 0.514048 | 3.3:+84078709 | MS.gene38726:CDS |
TTACTCTGGTTGAAGAACTT+GGG | 0.518823 | 3.3:+84080121 | MS.gene38726:CDS |
AGGAAACGTTCTTGCAAAGA+TGG | 0.521510 | 3.3:+84078789 | MS.gene38726:CDS |
TCGCCGCTCTCGTTGAACCC+TGG | 0.524911 | 3.3:+84078307 | MS.gene38726:CDS |
AACCCAGAAGCCTGAGAGAA+GGG | 0.528826 | 3.3:+84080086 | MS.gene38726:CDS |
CCAGGTCCATAAATTACCCC+AGG | 0.529788 | 3.3:-84078754 | None:intergenic |
GGTGCATCCGGTTACCTTGG+TGG | 0.530784 | 3.3:+84078117 | MS.gene38726:CDS |
TTTCCTTTGCCTATGTAACC+AGG | 0.531525 | 3.3:-84079390 | None:intergenic |
GCCGTAGACTATTTCGGTAG+AGG | 0.540893 | 3.3:-84078223 | None:intergenic |
GGGGAAAGGTATTTACTGAC+GGG | 0.541865 | 3.3:+84079486 | MS.gene38726:CDS |
GGGTCTGACTATGACCTTGA+CGG | 0.548475 | 3.3:-84078175 | None:intergenic |
AAGAAGTGCGGAGAGATCGC+TGG | 0.550644 | 3.3:-84078199 | None:intergenic |
TTAGAGGGATCGGGGAGCCA+GGG | 0.553029 | 3.3:-84078324 | None:intergenic |
AAGCTTCAATCACACACAAA+GGG | 0.553221 | 3.3:-84079584 | None:intergenic |
GGAGTAACCTTGCCGGTGGA+GGG | 0.554584 | 3.3:-84078154 | None:intergenic |
GGTAGATTACCTGGTTACAT+AGG | 0.554685 | 3.3:+84079381 | MS.gene38726:CDS |
ATGAAGAAGGTTGTGGTGAC+CGG | 0.557804 | 3.3:+84078096 | MS.gene38726:CDS |
CCCTCTACCGAAATAGTCTA+CGG | 0.558374 | 3.3:+84078222 | MS.gene38726:CDS |
TAGGGTGAAAGGAATGAAGA+AGG | 0.560617 | 3.3:+84078083 | None:intergenic |
GATGTCGCCGTAGACTATTT+CGG | 0.563374 | 3.3:-84078229 | None:intergenic |
CCGTAGACTATTTCGGTAGA+GGG | 0.565487 | 3.3:-84078222 | None:intergenic |
ACCAAGGTAACCGGATGCAC+CGG | 0.568156 | 3.3:-84078115 | None:intergenic |
GTGTGATTGAAGCTTATGGA+TGG | 0.572510 | 3.3:+84079592 | MS.gene38726:CDS |
GGACCTGGAAAAGTCACTGC+AGG | 0.573017 | 3.3:+84078769 | MS.gene38726:CDS |
GACGGAGCAATCGGAGAAGG+CGG | 0.574794 | 3.3:-84078274 | None:intergenic |
TGAAGGTTTGAAGAATGTGT+TGG | 0.575694 | 3.3:+84078445 | MS.gene38726:CDS |
TGGGGAAAGGTATTTACTGA+CGG | 0.577303 | 3.3:+84079485 | MS.gene38726:CDS |
AAACCCAGAAGCCTGAGAGA+AGG | 0.580491 | 3.3:+84080085 | MS.gene38726:CDS |
CACAAAGGGATACTAACCAT+TGG | 0.587521 | 3.3:-84079570 | None:intergenic |
CACCAATACTAGAAAACCAA+TGG | 0.590719 | 3.3:+84079554 | MS.gene38726:CDS |
ATTGCAAGCTGCGTCTGAGG+GGG | 0.592571 | 3.3:+84078711 | MS.gene38726:CDS |
TTCTTACGAGAAAGCTAAAG+CGG | 0.594506 | 3.3:+84080051 | MS.gene38726:CDS |
CACGTGGATGATGTAGTGGA+GGG | 0.597809 | 3.3:+84079432 | MS.gene38726:CDS |
AAAAGGGACAAATTGGGGAA+AGG | 0.597895 | 3.3:+84079472 | MS.gene38726:CDS |
TCACGTGGATGATGTAGTGG+AGG | 0.604726 | 3.3:+84079431 | MS.gene38726:CDS |
TTACCTGGTTACATAGGCAA+AGG | 0.607299 | 3.3:+84079387 | MS.gene38726:CDS |
AGTGCGGAGAGATCGCTGGC+GGG | 0.607905 | 3.3:-84078195 | None:intergenic |
CAGTCACGTGGATGATGTAG+TGG | 0.608268 | 3.3:+84079428 | MS.gene38726:CDS |
CCTACAGTGATGAATTTAGA+GGG | 0.610435 | 3.3:-84078339 | None:intergenic |
TCAGCAATAGCTCCATCAGT+TGG | 0.610570 | 3.3:-84078533 | None:intergenic |
GGCTTGCAGAGGTATTACTC+TGG | 0.610945 | 3.3:+84080107 | MS.gene38726:CDS |
AGCAATCGGAGAAGGCGGAG+AGG | 0.612030 | 3.3:-84078269 | None:intergenic |
AATAGTGTTGCTTTATCCTG+GGG | 0.612704 | 3.3:+84078738 | MS.gene38726:CDS |
GAAAGGAATGAAGAAGGTTG+TGG | 0.615924 | 3.3:+84078089 | None:intergenic |
TTTGAAGAATGTGTTGGAAG+CGG | 0.617316 | 3.3:+84078451 | MS.gene38726:CDS |
TGTAACTCCCTCCACCGGCA+AGG | 0.622930 | 3.3:+84078147 | MS.gene38726:CDS |
AAGTGCGGAGAGATCGCTGG+CGG | 0.624153 | 3.3:-84078196 | None:intergenic |
TAAGCTTCAATCACACACAA+AGG | 0.625443 | 3.3:-84079585 | None:intergenic |
CCTGAGAGAAGGGCTTGCAG+AGG | 0.625831 | 3.3:+84080096 | MS.gene38726:CDS |
TGATGAATTTAGAGGGATCG+GGG | 0.632493 | 3.3:-84078332 | None:intergenic |
GAGCCAGGGTTCAACGAGAG+CGG | 0.635737 | 3.3:-84078310 | None:intergenic |
AGCGGCGAGGTGGAAGACGA+CGG | 0.637580 | 3.3:-84078292 | None:intergenic |
GTTCAACGAGAGCGGCGAGG+TGG | 0.638189 | 3.3:-84078302 | None:intergenic |
AGCTCTGTAACTCCCTCCAC+CGG | 0.638268 | 3.3:+84078142 | MS.gene38726:CDS |
CACGGAGTATGAGAAATCAA+AGG | 0.645350 | 3.3:+84078669 | MS.gene38726:CDS |
AGTTACAGAGCTTTCCACCA+AGG | 0.655017 | 3.3:-84078131 | None:intergenic |
TGACGGAGTAACCTTGCCGG+TGG | 0.655172 | 3.3:-84078158 | None:intergenic |
TTCGGTAGAGGGAAGAAGTG+CGG | 0.656270 | 3.3:-84078211 | None:intergenic |
CCGGCAAGGTTACTCCGTCA+AGG | 0.659151 | 3.3:+84078161 | MS.gene38726:CDS |
CATTGCAAGCTGCGTCTGAG+GGG | 0.665679 | 3.3:+84078710 | MS.gene38726:CDS |
AGGGTTCAACGAGAGCGGCG+AGG | 0.708116 | 3.3:-84078305 | None:intergenic |
ACGTGGATGATGTAGTGGAG+GGG | 0.712851 | 3.3:+84079433 | MS.gene38726:CDS |
GGTGAAGCAAACCAAGACAG+TGG | 0.722877 | 3.3:+84078472 | MS.gene38726:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAATTAAAAAAGCAAAAA+TGG | - | chr3.3:84078593-84078612 | None:intergenic | 10.0% |
!! | AATTGTAAAATAAAATTTCA+TGG | + | chr3.3:84079882-84079901 | MS.gene38726:intron | 10.0% |
!! | AAAAAAATCAAAATTTAGAG+CGG | - | chr3.3:84079285-84079304 | None:intergenic | 15.0% |
!! | ACAAAAAAAAAATGAGAACA+GGG | - | chr3.3:84079981-84080000 | None:intergenic | 20.0% |
!! | CATATCAAAAACTTGATTAA+AGG | - | chr3.3:84079523-84079542 | None:intergenic | 20.0% |
!! | GAATTAATTAACAGAATAAG+AGG | - | chr3.3:84078394-84078413 | None:intergenic | 20.0% |
!! | GTTAAACATTGAAACAAATT+TGG | - | chr3.3:84079789-84079808 | None:intergenic | 20.0% |
!!! | AAATAAGAGAGTATATGATT+TGG | - | chr3.3:84079713-84079732 | None:intergenic | 20.0% |
!!! | ACTTAATCTAAATCTAAAGT+TGG | + | chr3.3:84079238-84079257 | MS.gene38726:intron | 20.0% |
!!! | ATCAATTTTCGTTTGAAATT+AGG | + | chr3.3:84078415-84078434 | MS.gene38726:intron | 20.0% |
!!! | ATTCTTTTTAATTTTTCAGC+TGG | + | chr3.3:84079344-84079363 | MS.gene38726:intron | 20.0% |
!!! | CATAGAAGTGTAAAAATAAA+TGG | + | chr3.3:84079811-84079830 | MS.gene38726:intron | 20.0% |
!!! | CTTTAATCAAGTTTTTGATA+TGG | + | chr3.3:84079521-84079540 | MS.gene38726:CDS | 20.0% |
!!! | TCAGTTTTATCTCAATAAAT+GGG | + | chr3.3:84079911-84079930 | MS.gene38726:intron | 20.0% |
!!! | TTCAGTTTTATCTCAATAAA+TGG | + | chr3.3:84079910-84079929 | MS.gene38726:intron | 20.0% |
! | CACAAAAAAAAAATGAGAAC+AGG | - | chr3.3:84079982-84080001 | None:intergenic | 25.0% |
! | GATTTAATGCATCTTTGTAT+TGG | + | chr3.3:84078897-84078916 | MS.gene38726:intron | 25.0% |
! | GGATAATCTTGAAACATAAA+AGG | - | chr3.3:84079850-84079869 | None:intergenic | 25.0% |
! | TAAATCCTAATTCGAAATGT+AGG | + | chr3.3:84078624-84078643 | MS.gene38726:intron | 25.0% |
! | TTAACAGAATAAGAGGATTA+AGG | - | chr3.3:84078387-84078406 | None:intergenic | 25.0% |
!! | TGTAACTTTTGCTAAAATCA+CGG | - | chr3.3:84078953-84078972 | None:intergenic | 25.0% |
!!! | TTATTTTACAATTGCCCATT+AGG | - | chr3.3:84079875-84079894 | None:intergenic | 25.0% |
AAACATGCTTCAACAAAATC+AGG | + | chr3.3:84079048-84079067 | MS.gene38726:intron | 30.0% | |
AACATGCTTCAACAAAATCA+GGG | + | chr3.3:84079049-84079068 | MS.gene38726:intron | 30.0% | |
ACAGTGAATTTGCAAAATCA+CGG | + | chr3.3:84078988-84079007 | MS.gene38726:intron | 30.0% | |
ATGAACCTACATTTCGAATT+AGG | - | chr3.3:84078632-84078651 | None:intergenic | 30.0% | |
ATTGAAAATCAAAGTCCAGA+AGG | - | chr3.3:84079680-84079699 | None:intergenic | 30.0% | |
CTATGAAAAAGGGACAAATT+GGG | + | chr3.3:84079466-84079485 | MS.gene38726:CDS | 30.0% | |
GAGTTCTGTTATAACATGTA+TGG | + | chr3.3:84079118-84079137 | MS.gene38726:intron | 30.0% | |
TAGTGAGTTTCTTAGAATCA+AGG | - | chr3.3:84079021-84079040 | None:intergenic | 30.0% | |
TATGAAAAAGGGACAAATTG+GGG | + | chr3.3:84079467-84079486 | MS.gene38726:CDS | 30.0% | |
TCAAGATTATCCTTCCTAAT+GGG | + | chr3.3:84079858-84079877 | MS.gene38726:intron | 30.0% | |
TTCAAGATTATCCTTCCTAA+TGG | + | chr3.3:84079857-84079876 | MS.gene38726:intron | 30.0% | |
! | ATTAAGGAGGATTTGAAATG+AGG | - | chr3.3:84078371-84078390 | None:intergenic | 30.0% |
! | TAAATTTTCATTCAGTCACG+TGG | + | chr3.3:84079416-84079435 | MS.gene38726:CDS | 30.0% |
! | TCATGAGAAATTTTTCTGCA+CGG | + | chr3.3:84078651-84078670 | MS.gene38726:CDS | 30.0% |
! | TTAAGGAGGATTTGAAATGA+GGG | - | chr3.3:84078370-84078389 | None:intergenic | 30.0% |
! | TTGTAACATCTAGTTTGAAG+TGG | + | chr3.3:84079303-84079322 | MS.gene38726:intron | 30.0% |
!! | TTCTTTTGAAAACTATCGCT+TGG | - | chr3.3:84079940-84079959 | None:intergenic | 30.0% |
!!! | AACCATTGGTTTTCTAGTAT+TGG | - | chr3.3:84079559-84079578 | None:intergenic | 30.0% |
!!! | TGTTTTAACATTGAACCAGA+CGG | + | chr3.3:84080000-84080019 | MS.gene38726:intron | 30.0% |
AAGCTTCAATCACACACAAA+GGG | - | chr3.3:84079587-84079606 | None:intergenic | 35.0% | |
ACAGAATAAGAGGATTAAGG+AGG | - | chr3.3:84078384-84078403 | None:intergenic | 35.0% | |
AGATCATCTAATGCAGTAGT+AGG | + | chr3.3:84078867-84078886 | MS.gene38726:intron | 35.0% | |
AGTGATGAATTTAGAGGGAT+CGG | - | chr3.3:84078337-84078356 | None:intergenic | 35.0% | |
ATTACTCTGGTTGAAGAACT+TGG | + | chr3.3:84080120-84080139 | MS.gene38726:CDS | 35.0% | |
CACATTGCTGCTATGAAAAA+GGG | + | chr3.3:84079456-84079475 | MS.gene38726:CDS | 35.0% | |
CACCAATACTAGAAAACCAA+TGG | + | chr3.3:84079554-84079573 | MS.gene38726:CDS | 35.0% | |
CAGAACTCTAAGTGTATGTA+TGG | - | chr3.3:84079106-84079125 | None:intergenic | 35.0% | |
CCTACAGTGATGAATTTAGA+GGG | - | chr3.3:84078342-84078361 | None:intergenic | 35.0% | |
CTTTATCCTGGGGTAATTTA+TGG | + | chr3.3:84078748-84078767 | MS.gene38726:CDS | 35.0% | |
GCAAAAGTTACATGCATCTT+TGG | + | chr3.3:84078961-84078980 | MS.gene38726:intron | 35.0% | |
GCTATGAAAAAGGGACAAAT+TGG | + | chr3.3:84079465-84079484 | MS.gene38726:CDS | 35.0% | |
TAAGCTTCAATCACACACAA+AGG | - | chr3.3:84079588-84079607 | None:intergenic | 35.0% | |
TAAGTGTATGTATGGATGAG+TGG | - | chr3.3:84079098-84079117 | None:intergenic | 35.0% | |
TAATGCAGTAGTAGGATAGT+TGG | + | chr3.3:84078875-84078894 | MS.gene38726:intron | 35.0% | |
TCCTACAGTGATGAATTTAG+AGG | - | chr3.3:84078343-84078362 | None:intergenic | 35.0% | |
TGAAATTAGGTCAACGTTGA+AGG | + | chr3.3:84078428-84078447 | MS.gene38726:intron | 35.0% | |
TGAAGGTTTGAAGAATGTGT+TGG | + | chr3.3:84078445-84078464 | MS.gene38726:CDS | 35.0% | |
TGAATTTGCAAAATCACGGT+GGG | + | chr3.3:84078992-84079011 | MS.gene38726:intron | 35.0% | |
TTACTCTGGTTGAAGAACTT+GGG | + | chr3.3:84080121-84080140 | MS.gene38726:CDS | 35.0% | |
TTCTTACGAGAAAGCTAAAG+CGG | + | chr3.3:84080051-84080070 | MS.gene38726:CDS | 35.0% | |
TTGTGTGTGATTGAAGCTTA+TGG | + | chr3.3:84079588-84079607 | MS.gene38726:CDS | 35.0% | |
TTTACAATTGCCCATTAGGA+AGG | - | chr3.3:84079871-84079890 | None:intergenic | 35.0% | |
TTTGAAGAATGTGTTGGAAG+CGG | + | chr3.3:84078451-84078470 | MS.gene38726:CDS | 35.0% | |
! | AAATCTAAAGTTGGAACAGC+CGG | + | chr3.3:84079247-84079266 | MS.gene38726:intron | 35.0% |
! | AACTTTTGCTAAAATCACGG+TGG | - | chr3.3:84078950-84078969 | None:intergenic | 35.0% |
!! | AATAGTGTTGCTTTATCCTG+GGG | + | chr3.3:84078738-84078757 | MS.gene38726:CDS | 35.0% |
!! | CAATAGTGTTGCTTTATCCT+GGG | + | chr3.3:84078737-84078756 | MS.gene38726:CDS | 35.0% |
!! | GTTTTAATCTCTCGAATCAC+TGG | + | chr3.3:84079621-84079640 | MS.gene38726:CDS | 35.0% |
!!! | GCATGTTTTAAGACATCGTT+GGG | + | chr3.3:84080024-84080043 | MS.gene38726:CDS | 35.0% |
!!! | TGCATGTTTTAAGACATCGT+TGG | + | chr3.3:84080023-84080042 | MS.gene38726:CDS | 35.0% |
AAAAGGGACAAATTGGGGAA+AGG | + | chr3.3:84079472-84079491 | MS.gene38726:CDS | 40.0% | |
AACAAGTTTCTCCACTGTCT+TGG | - | chr3.3:84078486-84078505 | None:intergenic | 40.0% | |
AGGAAACGTTCTTGCAAAGA+TGG | + | chr3.3:84078789-84078808 | MS.gene38726:CDS | 40.0% | |
AGTGGTTAGCGACAAAATCA+CGG | - | chr3.3:84079080-84079099 | None:intergenic | 40.0% | |
CACAAAGGGATACTAACCAT+TGG | - | chr3.3:84079573-84079592 | None:intergenic | 40.0% | |
CACGGAGTATGAGAAATCAA+AGG | + | chr3.3:84078669-84078688 | MS.gene38726:CDS | 40.0% | |
CCAGGATAAAGCAACACTAT+TGG | - | chr3.3:84078739-84078758 | None:intergenic | 40.0% | |
CCCTCTAAATTCATCACTGT+AGG | + | chr3.3:84078339-84078358 | MS.gene38726:intron | 40.0% | |
GCACATTGCTGCTATGAAAA+AGG | + | chr3.3:84079455-84079474 | MS.gene38726:CDS | 40.0% | |
GGAGAGGAGAGATGAAAAAT+CGG | - | chr3.3:84078256-84078275 | None:intergenic | 40.0% | |
GGTAGATTACCTGGTTACAT+AGG | + | chr3.3:84079381-84079400 | MS.gene38726:CDS | 40.0% | |
GTGAATTTGCAAAATCACGG+TGG | + | chr3.3:84078991-84079010 | MS.gene38726:intron | 40.0% | |
GTGATGAATTTAGAGGGATC+GGG | - | chr3.3:84078336-84078355 | None:intergenic | 40.0% | |
GTGTGATTGAAGCTTATGGA+TGG | + | chr3.3:84079592-84079611 | MS.gene38726:CDS | 40.0% | |
TGATGAATTTAGAGGGATCG+GGG | - | chr3.3:84078335-84078354 | None:intergenic | 40.0% | |
TTACCTGGTTACATAGGCAA+AGG | + | chr3.3:84079387-84079406 | MS.gene38726:CDS | 40.0% | |
TTTCCTTTGCCTATGTAACC+AGG | - | chr3.3:84079393-84079412 | None:intergenic | 40.0% | |
! | AATCTAAAGTTGGAACAGCC+GGG | + | chr3.3:84079248-84079267 | MS.gene38726:intron | 40.0% |
! | ATGCATCTTTGTATTGGCAG+CGG | + | chr3.3:84078903-84078922 | MS.gene38726:intron | 40.0% |
! | GTTACCTTTTATCAGTCCAC+CGG | + | chr3.3:84079647-84079666 | MS.gene38726:CDS | 40.0% |
!! | CCAATAGTGTTGCTTTATCC+TGG | + | chr3.3:84078736-84078755 | MS.gene38726:CDS | 40.0% |
!! | CGTTTTAGTGGTAGATTACC+TGG | + | chr3.3:84079372-84079391 | MS.gene38726:CDS | 40.0% |
!! | TGGGGAAAGGTATTTACTGA+CGG | + | chr3.3:84079485-84079504 | MS.gene38726:CDS | 40.0% |
AAGTCCAGAAGGAAGCTTAC+CGG | - | chr3.3:84079669-84079688 | None:intergenic | 45.0% | |
AGTTACAGAGCTTTCCACCA+AGG | - | chr3.3:84078134-84078153 | None:intergenic | 45.0% | |
ATGAAGAAGGTTGTGGTGAC+CGG | + | chr3.3:84078096-84078115 | MS.gene38726:CDS | 45.0% | |
CCCTCTACCGAAATAGTCTA+CGG | + | chr3.3:84078222-84078241 | MS.gene38726:CDS | 45.0% | |
CCGTAGACTATTTCGGTAGA+GGG | - | chr3.3:84078225-84078244 | None:intergenic | 45.0% | |
CTGGTTGAAGAACTTGGGAT+TGG | + | chr3.3:84080126-84080145 | MS.gene38726:CDS | 45.0% | |
GATGTCGCCGTAGACTATTT+CGG | - | chr3.3:84078232-84078251 | None:intergenic | 45.0% | |
GCTTTGTAACACGAGTCAAG+TGG | - | chr3.3:84079157-84079176 | None:intergenic | 45.0% | |
GTCTTAAAACATGCACCGTC+TGG | - | chr3.3:84080018-84080037 | None:intergenic | 45.0% | |
TCAGCAATAGCTCCATCAGT+TGG | - | chr3.3:84078536-84078555 | None:intergenic | 45.0% | |
TTTGCTCTTGGACCAACTGA+TGG | + | chr3.3:84078521-84078540 | MS.gene38726:CDS | 45.0% | |
! | CAGCTGGTAGAACGTTTTAG+TGG | + | chr3.3:84079360-84079379 | MS.gene38726:intron | 45.0% |
! | TGCATCTTTGTATTGGCAGC+GGG | + | chr3.3:84078904-84078923 | MS.gene38726:intron | 45.0% |
! | TTTCCTGCAGTGACTTTTCC+AGG | - | chr3.3:84078775-84078794 | None:intergenic | 45.0% |
!! | CTTACCGGTGGACTGATAAA+AGG | - | chr3.3:84079654-84079673 | None:intergenic | 45.0% |
!! | GGGGAAAGGTATTTACTGAC+GGG | + | chr3.3:84079486-84079505 | MS.gene38726:CDS | 45.0% |
!!! | ACGTCGTCGTTTTTTGCTCT+TGG | + | chr3.3:84078509-84078528 | MS.gene38726:CDS | 45.0% |
AAACCCAGAAGCCTGAGAGA+AGG | + | chr3.3:84080085-84080104 | MS.gene38726:CDS | 50.0% | |
AACCCAGAAGCCTGAGAGAA+GGG | + | chr3.3:84080086-84080105 | MS.gene38726:CDS | 50.0% | |
CAGTCACGTGGATGATGTAG+TGG | + | chr3.3:84079428-84079447 | MS.gene38726:CDS | 50.0% | |
CCAGGTCCATAAATTACCCC+AGG | - | chr3.3:84078757-84078776 | None:intergenic | 50.0% | |
CCTGGGGTAATTTATGGACC+TGG | + | chr3.3:84078754-84078773 | MS.gene38726:CDS | 50.0% | |
GAGCTTTCCACCAAGGTAAC+CGG | - | chr3.3:84078127-84078146 | None:intergenic | 50.0% | |
GCCGTAGACTATTTCGGTAG+AGG | - | chr3.3:84078226-84078245 | None:intergenic | 50.0% | |
GGGTCTGACTATGACCTTGA+CGG | - | chr3.3:84078178-84078197 | None:intergenic | 50.0% | |
GGTGAAGCAAACCAAGACAG+TGG | + | chr3.3:84078472-84078491 | MS.gene38726:CDS | 50.0% | |
GGTTAGCGACAAAATCACGG+TGG | - | chr3.3:84079077-84079096 | None:intergenic | 50.0% | |
TCACGTGGATGATGTAGTGG+AGG | + | chr3.3:84079431-84079450 | MS.gene38726:CDS | 50.0% | |
TTCGGTAGAGGGAAGAAGTG+CGG | - | chr3.3:84078214-84078233 | None:intergenic | 50.0% | |
! | ACGTGGATGATGTAGTGGAG+GGG | + | chr3.3:84079433-84079452 | MS.gene38726:CDS | 50.0% |
! | CACGTGGATGATGTAGTGGA+GGG | + | chr3.3:84079432-84079451 | MS.gene38726:CDS | 50.0% |
!! | GGCTTGCAGAGGTATTACTC+TGG | + | chr3.3:84080107-84080126 | MS.gene38726:CDS | 50.0% |
AAGCCCTTCTCTCAGGCTTC+TGG | - | chr3.3:84080092-84080111 | None:intergenic | 55.0% | |
ACCAAGGTAACCGGATGCAC+CGG | - | chr3.3:84078118-84078137 | None:intergenic | 55.0% | |
AGAGCGGCAGTATGATGTCC+CGG | - | chr3.3:84079269-84079288 | None:intergenic | 55.0% | |
AGCCCTTCTCTCAGGCTTCT+GGG | - | chr3.3:84080091-84080110 | None:intergenic | 55.0% | |
AGCTCTGTAACTCCCTCCAC+CGG | + | chr3.3:84078142-84078161 | MS.gene38726:CDS | 55.0% | |
ATTGCAAGCTGCGTCTGAGG+GGG | + | chr3.3:84078711-84078730 | MS.gene38726:CDS | 55.0% | |
CATTGCAAGCTGCGTCTGAG+GGG | + | chr3.3:84078710-84078729 | MS.gene38726:CDS | 55.0% | |
CCTTGACGGAGTAACCTTGC+CGG | - | chr3.3:84078164-84078183 | None:intergenic | 55.0% | |
GCATTGCAAGCTGCGTCTGA+GGG | + | chr3.3:84078709-84078728 | MS.gene38726:CDS | 55.0% | |
GGACCTGGAAAAGTCACTGC+AGG | + | chr3.3:84078769-84078788 | MS.gene38726:CDS | 55.0% | |
GTGGAAGACGACGGAGCAAT+CGG | - | chr3.3:84078286-84078305 | None:intergenic | 55.0% | |
TCCACCGGTAAGCTTCCTTC+TGG | + | chr3.3:84079662-84079681 | MS.gene38726:intron | 55.0% | |
TCCAGAAGGAAGCTTACCGG+TGG | - | chr3.3:84079666-84079685 | None:intergenic | 55.0% | |
TGCATTGCAAGCTGCGTCTG+AGG | + | chr3.3:84078708-84078727 | MS.gene38726:CDS | 55.0% | |
! | AAGAAGTGCGGAGAGATCGC+TGG | - | chr3.3:84078202-84078221 | None:intergenic | 55.0% |
AAGTGCGGAGAGATCGCTGG+CGG | - | chr3.3:84078199-84078218 | None:intergenic | 60.0% | |
ACCGGTGCATCCGGTTACCT+TGG | + | chr3.3:84078114-84078133 | MS.gene38726:CDS | 60.0% | |
AGCAATCGGAGAAGGCGGAG+AGG | - | chr3.3:84078272-84078291 | None:intergenic | 60.0% | |
CCGGCAAGGTTACTCCGTCA+AGG | + | chr3.3:84078161-84078180 | MS.gene38726:CDS | 60.0% | |
CCTCTGCAAGCCCTTCTCTC+AGG | - | chr3.3:84080099-84080118 | None:intergenic | 60.0% | |
CCTGAGAGAAGGGCTTGCAG+AGG | + | chr3.3:84080096-84080115 | MS.gene38726:CDS | 60.0% | |
GACGACGGAGCAATCGGAGA+AGG | - | chr3.3:84078280-84078299 | None:intergenic | 60.0% | |
GACGGAGCAATCGGAGAAGG+CGG | - | chr3.3:84078277-84078296 | None:intergenic | 60.0% | |
GAGCCAGGGTTCAACGAGAG+CGG | - | chr3.3:84078313-84078332 | None:intergenic | 60.0% | |
GGAGTAACCTTGCCGGTGGA+GGG | - | chr3.3:84078157-84078176 | None:intergenic | 60.0% | |
GGTGCATCCGGTTACCTTGG+TGG | + | chr3.3:84078117-84078136 | MS.gene38726:CDS | 60.0% | |
GTTGTGGTGACCGGTGCATC+CGG | + | chr3.3:84078105-84078124 | MS.gene38726:CDS | 60.0% | |
TGACGGAGTAACCTTGCCGG+TGG | - | chr3.3:84078161-84078180 | None:intergenic | 60.0% | |
TGTAACTCCCTCCACCGGCA+AGG | + | chr3.3:84078147-84078166 | MS.gene38726:CDS | 60.0% | |
TTAGAGGGATCGGGGAGCCA+GGG | - | chr3.3:84078327-84078346 | None:intergenic | 60.0% | |
TTTAGAGGGATCGGGGAGCC+AGG | - | chr3.3:84078328-84078347 | None:intergenic | 60.0% | |
AGCGGCGAGGTGGAAGACGA+CGG | - | chr3.3:84078295-84078314 | None:intergenic | 65.0% | |
AGGGTTCAACGAGAGCGGCG+AGG | - | chr3.3:84078308-84078327 | None:intergenic | 65.0% | |
AGTGCGGAGAGATCGCTGGC+GGG | - | chr3.3:84078198-84078217 | None:intergenic | 65.0% | |
CGGAGTAACCTTGCCGGTGG+AGG | - | chr3.3:84078158-84078177 | None:intergenic | 65.0% | |
GTTCAACGAGAGCGGCGAGG+TGG | - | chr3.3:84078305-84078324 | None:intergenic | 65.0% | |
TCGCCGCTCTCGTTGAACCC+TGG | + | chr3.3:84078307-84078326 | MS.gene38726:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 84078096 | 84080159 | 84078096 | ID=MS.gene38726 |
chr3.3 | mRNA | 84078096 | 84080159 | 84078096 | ID=MS.gene38726.t1;Parent=MS.gene38726 |
chr3.3 | exon | 84078096 | 84078356 | 84078096 | ID=MS.gene38726.t1.exon1;Parent=MS.gene38726.t1 |
chr3.3 | CDS | 84078096 | 84078356 | 84078096 | ID=cds.MS.gene38726.t1;Parent=MS.gene38726.t1 |
chr3.3 | exon | 84078437 | 84078565 | 84078437 | ID=MS.gene38726.t1.exon2;Parent=MS.gene38726.t1 |
chr3.3 | CDS | 84078437 | 84078565 | 84078437 | ID=cds.MS.gene38726.t1;Parent=MS.gene38726.t1 |
chr3.3 | exon | 84078646 | 84078810 | 84078646 | ID=MS.gene38726.t1.exon3;Parent=MS.gene38726.t1 |
chr3.3 | CDS | 84078646 | 84078810 | 84078646 | ID=cds.MS.gene38726.t1;Parent=MS.gene38726.t1 |
chr3.3 | exon | 84079363 | 84079668 | 84079363 | ID=MS.gene38726.t1.exon4;Parent=MS.gene38726.t1 |
chr3.3 | CDS | 84079363 | 84079668 | 84079363 | ID=cds.MS.gene38726.t1;Parent=MS.gene38726.t1 |
chr3.3 | exon | 84080019 | 84080159 | 84080019 | ID=MS.gene38726.t1.exon5;Parent=MS.gene38726.t1 |
chr3.3 | CDS | 84080019 | 84080159 | 84080019 | ID=cds.MS.gene38726.t1;Parent=MS.gene38726.t1 |
Gene Sequence |
Protein sequence |