AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene38726


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38726.t1 MTR_3g101500 96.997 333 10 0 1 333 1 333 0.0 663
MS.gene38726.t1 MTR_3g101500 94.649 299 16 0 1 299 1 299 0.0 579
MS.gene38726.t1 MTR_3g101500 95.263 190 9 0 1 190 1 190 5.52e-129 367
MS.gene38726.t1 MTR_3g105440 26.361 349 220 14 5 322 10 352 6.08e-18 85.1
MS.gene38726.t1 MTR_3g105440 26.124 356 212 14 5 322 10 352 6.42e-18 84.7
MS.gene38726.t1 MTR_7g074820 26.667 285 171 9 3 260 7 280 5.61e-16 77.8
MS.gene38726.t1 MTR_1g022445 26.882 279 173 11 4 260 8 277 8.99e-16 77.4
MS.gene38726.t1 MTR_1g022440 26.071 280 174 11 4 260 8 277 4.15e-15 75.5
MS.gene38726.t1 MTR_7g074850 26.074 326 197 11 3 302 7 314 4.38e-15 75.5
MS.gene38726.t1 MTR_7g074710 27.273 253 151 9 3 230 7 251 1.06e-14 74.3
MS.gene38726.t1 MTR_4g081440 24.014 279 178 10 3 250 23 298 9.68e-14 71.6
MS.gene38726.t1 MTR_4g081440 24.014 279 178 10 3 250 19 294 1.10e-13 71.2
MS.gene38726.t1 MTR_7g074880 25.263 285 172 10 3 260 7 277 1.33e-13 70.9
MS.gene38726.t1 MTR_4g077130 25.806 279 178 7 2 260 7 276 1.80e-13 70.5
MS.gene38726.t1 MTR_4g077100 25.180 278 181 9 2 260 9 278 3.34e-13 69.3
MS.gene38726.t1 MTR_7g117190 26.552 290 148 15 3 242 6 280 5.29e-13 69.3
MS.gene38726.t1 MTR_7g117190 26.552 290 148 15 3 242 6 280 6.03e-13 68.9
MS.gene38726.t1 MTR_4g077100 24.820 278 182 9 2 260 9 278 6.15e-13 68.9
MS.gene38726.t1 MTR_0034s0060 24.280 243 169 6 2 230 137 378 7.60e-13 69.7
MS.gene38726.t1 MTR_4g009040 26.705 352 199 14 2 332 11 324 9.84e-13 68.6
MS.gene38726.t1 MTR_2g073240 23.868 243 170 6 2 230 19 260 1.18e-12 69.3
MS.gene38726.t1 MTR_2g028620 29.020 255 144 13 4 231 10 254 1.22e-12 68.2
MS.gene38726.t1 MTR_2g028620 29.020 255 144 13 4 231 10 254 1.27e-12 68.2
MS.gene38726.t1 MTR_4g009040 26.404 356 199 14 2 332 11 328 3.11e-12 67.0
MS.gene38726.t1 MTR_8g062110 26.295 251 159 8 2 232 7 251 5.44e-12 65.9
MS.gene38726.t1 MTR_8g062110 26.295 251 159 8 2 232 7 251 6.85e-12 65.5
MS.gene38726.t1 MTR_5g072620 27.200 250 157 8 2 231 3 247 8.83e-12 65.5
MS.gene38726.t1 MTR_8g062110 26.295 251 159 8 2 232 7 251 1.20e-11 65.1
MS.gene38726.t1 MTR_8g062110 26.295 251 159 8 2 232 16 260 1.26e-11 65.1
MS.gene38726.t1 MTR_4g009690 27.635 351 196 13 2 332 11 323 2.98e-11 63.9
MS.gene38726.t1 MTR_2g013250 25.806 279 163 13 3 242 6 279 5.22e-11 63.2
MS.gene38726.t1 MTR_4g009690 27.887 355 191 14 2 332 11 324 5.41e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38726.t1 AT4G33360 70.393 331 98 0 3 333 14 344 0.0 507
MS.gene38726.t1 AT4G33360 70.938 320 93 0 3 322 2 321 1.70e-176 492
MS.gene38726.t1 AT4G33360 71.228 285 82 0 3 287 14 298 5.88e-158 444
MS.gene38726.t1 AT1G09490 31.818 264 155 8 2 245 6 264 2.95e-23 98.6
MS.gene38726.t1 AT1G09480 29.924 264 160 8 2 245 6 264 9.64e-22 94.4
MS.gene38726.t1 AT1G09480 29.924 264 160 8 2 245 53 311 1.57e-21 94.4
MS.gene38726.t1 AT1G09510 30.798 263 153 10 2 242 6 261 3.32e-20 90.1
MS.gene38726.t1 AT1G61720 27.509 269 170 6 2 245 11 279 2.83e-18 84.7
MS.gene38726.t1 AT1G09490 30.918 207 127 6 50 245 32 233 5.93e-17 80.5
MS.gene38726.t1 AT5G58490 30.085 236 138 8 4 218 9 238 1.84e-14 73.6
MS.gene38726.t1 AT1G66800 26.744 258 166 7 2 242 6 257 2.46e-14 73.2
MS.gene38726.t1 AT5G19440 26.836 354 202 14 2 333 8 326 3.69e-14 72.8
MS.gene38726.t1 AT1G09500 28.516 256 153 9 2 234 6 254 4.16e-14 72.0
MS.gene38726.t1 AT2G45400 26.736 288 169 11 4 260 40 316 5.10e-14 72.4
MS.gene38726.t1 AT2G02400 26.459 257 168 9 2 241 4 256 6.46e-14 72.0
MS.gene38726.t1 AT1G09500 28.516 256 153 9 2 234 6 254 7.49e-14 71.6
MS.gene38726.t1 AT2G45400 26.102 295 176 12 4 267 40 323 8.42e-14 72.0
MS.gene38726.t1 AT1G53500 25.514 243 166 6 2 230 9 250 1.91e-13 71.6
MS.gene38726.t1 AT1G51410 28.195 266 162 9 2 245 7 265 7.81e-13 68.9
MS.gene38726.t1 AT2G33590 28.346 254 153 11 3 234 8 254 1.03e-12 68.2
MS.gene38726.t1 AT2G23910 25.899 278 170 10 4 260 10 272 1.43e-12 67.4
MS.gene38726.t1 AT2G23910 25.899 278 170 10 4 260 10 272 1.46e-12 67.4
MS.gene38726.t1 AT2G23910 25.899 278 170 10 4 260 10 272 2.18e-12 67.4
MS.gene38726.t1 AT5G14700 29.082 196 112 8 4 173 55 249 1.43e-11 64.7
MS.gene38726.t1 AT5G14700 29.082 196 112 8 4 173 55 249 3.20e-11 64.3
MS.gene38726.t1 AT1G80820 29.435 248 150 10 2 232 6 245 6.33e-11 62.4

Find 91 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTATCCTGGGGTAATTTA+TGG 0.110220 3.3:+84078748 MS.gene38726:CDS
AAGCCCTTCTCTCAGGCTTC+TGG 0.219625 3.3:-84080089 None:intergenic
GCACATTGCTGCTATGAAAA+AGG 0.255767 3.3:+84079455 MS.gene38726:CDS
TTGTGTGTGATTGAAGCTTA+TGG 0.293479 3.3:+84079588 MS.gene38726:CDS
CCAATAGTGTTGCTTTATCC+TGG 0.298721 3.3:+84078736 MS.gene38726:CDS
CTTACCGGTGGACTGATAAA+AGG 0.344492 3.3:-84079651 None:intergenic
AGCCCTTCTCTCAGGCTTCT+GGG 0.368707 3.3:-84080088 None:intergenic
ATTACTCTGGTTGAAGAACT+TGG 0.390223 3.3:+84080120 MS.gene38726:CDS
TTTAGAGGGATCGGGGAGCC+AGG 0.391159 3.3:-84078325 None:intergenic
TTTGCTCTTGGACCAACTGA+TGG 0.422894 3.3:+84078521 MS.gene38726:CDS
CAATAGTGTTGCTTTATCCT+GGG 0.434363 3.3:+84078737 MS.gene38726:CDS
TGAAATTAGGTCAACGTTGA+AGG 0.442193 3.3:+84078428 MS.gene38726:intron
GAGCTTTCCACCAAGGTAAC+CGG 0.454097 3.3:-84078124 None:intergenic
AACAAGTTTCTCCACTGTCT+TGG 0.460174 3.3:-84078483 None:intergenic
CCTTGACGGAGTAACCTTGC+CGG 0.465146 3.3:-84078161 None:intergenic
CCAGGATAAAGCAACACTAT+TGG 0.469005 3.3:-84078736 None:intergenic
GTGGAAGACGACGGAGCAAT+CGG 0.472753 3.3:-84078283 None:intergenic
GTTGTGGTGACCGGTGCATC+CGG 0.479262 3.3:+84078105 MS.gene38726:CDS
CCTGGGGTAATTTATGGACC+TGG 0.479761 3.3:+84078754 MS.gene38726:CDS
GTGATGAATTTAGAGGGATC+GGG 0.481282 3.3:-84078333 None:intergenic
TCCTACAGTGATGAATTTAG+AGG 0.485890 3.3:-84078340 None:intergenic
ACCGGTGCATCCGGTTACCT+TGG 0.487879 3.3:+84078114 MS.gene38726:CDS
TGCATTGCAAGCTGCGTCTG+AGG 0.495160 3.3:+84078708 MS.gene38726:CDS
CGGAGTAACCTTGCCGGTGG+AGG 0.498534 3.3:-84078155 None:intergenic
CCTCTGCAAGCCCTTCTCTC+AGG 0.502858 3.3:-84080096 None:intergenic
AGTGATGAATTTAGAGGGAT+CGG 0.503641 3.3:-84078334 None:intergenic
GACGACGGAGCAATCGGAGA+AGG 0.508216 3.3:-84078277 None:intergenic
CTGGTTGAAGAACTTGGGAT+TGG 0.511734 3.3:+84080126 MS.gene38726:CDS
GCATTGCAAGCTGCGTCTGA+GGG 0.514048 3.3:+84078709 MS.gene38726:CDS
TTACTCTGGTTGAAGAACTT+GGG 0.518823 3.3:+84080121 MS.gene38726:CDS
AGGAAACGTTCTTGCAAAGA+TGG 0.521510 3.3:+84078789 MS.gene38726:CDS
TCGCCGCTCTCGTTGAACCC+TGG 0.524911 3.3:+84078307 MS.gene38726:CDS
AACCCAGAAGCCTGAGAGAA+GGG 0.528826 3.3:+84080086 MS.gene38726:CDS
CCAGGTCCATAAATTACCCC+AGG 0.529788 3.3:-84078754 None:intergenic
GGTGCATCCGGTTACCTTGG+TGG 0.530784 3.3:+84078117 MS.gene38726:CDS
TTTCCTTTGCCTATGTAACC+AGG 0.531525 3.3:-84079390 None:intergenic
GCCGTAGACTATTTCGGTAG+AGG 0.540893 3.3:-84078223 None:intergenic
GGGGAAAGGTATTTACTGAC+GGG 0.541865 3.3:+84079486 MS.gene38726:CDS
GGGTCTGACTATGACCTTGA+CGG 0.548475 3.3:-84078175 None:intergenic
AAGAAGTGCGGAGAGATCGC+TGG 0.550644 3.3:-84078199 None:intergenic
TTAGAGGGATCGGGGAGCCA+GGG 0.553029 3.3:-84078324 None:intergenic
AAGCTTCAATCACACACAAA+GGG 0.553221 3.3:-84079584 None:intergenic
GGAGTAACCTTGCCGGTGGA+GGG 0.554584 3.3:-84078154 None:intergenic
GGTAGATTACCTGGTTACAT+AGG 0.554685 3.3:+84079381 MS.gene38726:CDS
ATGAAGAAGGTTGTGGTGAC+CGG 0.557804 3.3:+84078096 MS.gene38726:CDS
CCCTCTACCGAAATAGTCTA+CGG 0.558374 3.3:+84078222 MS.gene38726:CDS
TAGGGTGAAAGGAATGAAGA+AGG 0.560617 3.3:+84078083 None:intergenic
GATGTCGCCGTAGACTATTT+CGG 0.563374 3.3:-84078229 None:intergenic
CCGTAGACTATTTCGGTAGA+GGG 0.565487 3.3:-84078222 None:intergenic
ACCAAGGTAACCGGATGCAC+CGG 0.568156 3.3:-84078115 None:intergenic
GTGTGATTGAAGCTTATGGA+TGG 0.572510 3.3:+84079592 MS.gene38726:CDS
GGACCTGGAAAAGTCACTGC+AGG 0.573017 3.3:+84078769 MS.gene38726:CDS
GACGGAGCAATCGGAGAAGG+CGG 0.574794 3.3:-84078274 None:intergenic
TGAAGGTTTGAAGAATGTGT+TGG 0.575694 3.3:+84078445 MS.gene38726:CDS
TGGGGAAAGGTATTTACTGA+CGG 0.577303 3.3:+84079485 MS.gene38726:CDS
AAACCCAGAAGCCTGAGAGA+AGG 0.580491 3.3:+84080085 MS.gene38726:CDS
CACAAAGGGATACTAACCAT+TGG 0.587521 3.3:-84079570 None:intergenic
CACCAATACTAGAAAACCAA+TGG 0.590719 3.3:+84079554 MS.gene38726:CDS
ATTGCAAGCTGCGTCTGAGG+GGG 0.592571 3.3:+84078711 MS.gene38726:CDS
TTCTTACGAGAAAGCTAAAG+CGG 0.594506 3.3:+84080051 MS.gene38726:CDS
CACGTGGATGATGTAGTGGA+GGG 0.597809 3.3:+84079432 MS.gene38726:CDS
AAAAGGGACAAATTGGGGAA+AGG 0.597895 3.3:+84079472 MS.gene38726:CDS
TCACGTGGATGATGTAGTGG+AGG 0.604726 3.3:+84079431 MS.gene38726:CDS
TTACCTGGTTACATAGGCAA+AGG 0.607299 3.3:+84079387 MS.gene38726:CDS
AGTGCGGAGAGATCGCTGGC+GGG 0.607905 3.3:-84078195 None:intergenic
CAGTCACGTGGATGATGTAG+TGG 0.608268 3.3:+84079428 MS.gene38726:CDS
CCTACAGTGATGAATTTAGA+GGG 0.610435 3.3:-84078339 None:intergenic
TCAGCAATAGCTCCATCAGT+TGG 0.610570 3.3:-84078533 None:intergenic
GGCTTGCAGAGGTATTACTC+TGG 0.610945 3.3:+84080107 MS.gene38726:CDS
AGCAATCGGAGAAGGCGGAG+AGG 0.612030 3.3:-84078269 None:intergenic
AATAGTGTTGCTTTATCCTG+GGG 0.612704 3.3:+84078738 MS.gene38726:CDS
GAAAGGAATGAAGAAGGTTG+TGG 0.615924 3.3:+84078089 None:intergenic
TTTGAAGAATGTGTTGGAAG+CGG 0.617316 3.3:+84078451 MS.gene38726:CDS
TGTAACTCCCTCCACCGGCA+AGG 0.622930 3.3:+84078147 MS.gene38726:CDS
AAGTGCGGAGAGATCGCTGG+CGG 0.624153 3.3:-84078196 None:intergenic
TAAGCTTCAATCACACACAA+AGG 0.625443 3.3:-84079585 None:intergenic
CCTGAGAGAAGGGCTTGCAG+AGG 0.625831 3.3:+84080096 MS.gene38726:CDS
TGATGAATTTAGAGGGATCG+GGG 0.632493 3.3:-84078332 None:intergenic
GAGCCAGGGTTCAACGAGAG+CGG 0.635737 3.3:-84078310 None:intergenic
AGCGGCGAGGTGGAAGACGA+CGG 0.637580 3.3:-84078292 None:intergenic
GTTCAACGAGAGCGGCGAGG+TGG 0.638189 3.3:-84078302 None:intergenic
AGCTCTGTAACTCCCTCCAC+CGG 0.638268 3.3:+84078142 MS.gene38726:CDS
CACGGAGTATGAGAAATCAA+AGG 0.645350 3.3:+84078669 MS.gene38726:CDS
AGTTACAGAGCTTTCCACCA+AGG 0.655017 3.3:-84078131 None:intergenic
TGACGGAGTAACCTTGCCGG+TGG 0.655172 3.3:-84078158 None:intergenic
TTCGGTAGAGGGAAGAAGTG+CGG 0.656270 3.3:-84078211 None:intergenic
CCGGCAAGGTTACTCCGTCA+AGG 0.659151 3.3:+84078161 MS.gene38726:CDS
CATTGCAAGCTGCGTCTGAG+GGG 0.665679 3.3:+84078710 MS.gene38726:CDS
AGGGTTCAACGAGAGCGGCG+AGG 0.708116 3.3:-84078305 None:intergenic
ACGTGGATGATGTAGTGGAG+GGG 0.712851 3.3:+84079433 MS.gene38726:CDS
GGTGAAGCAAACCAAGACAG+TGG 0.722877 3.3:+84078472 MS.gene38726:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTAAAAAAGCAAAAA+TGG - chr3.3:84078593-84078612 None:intergenic 10.0%
!! AATTGTAAAATAAAATTTCA+TGG + chr3.3:84079882-84079901 MS.gene38726:intron 10.0%
!! AAAAAAATCAAAATTTAGAG+CGG - chr3.3:84079285-84079304 None:intergenic 15.0%
!! ACAAAAAAAAAATGAGAACA+GGG - chr3.3:84079981-84080000 None:intergenic 20.0%
!! CATATCAAAAACTTGATTAA+AGG - chr3.3:84079523-84079542 None:intergenic 20.0%
!! GAATTAATTAACAGAATAAG+AGG - chr3.3:84078394-84078413 None:intergenic 20.0%
!! GTTAAACATTGAAACAAATT+TGG - chr3.3:84079789-84079808 None:intergenic 20.0%
!!! AAATAAGAGAGTATATGATT+TGG - chr3.3:84079713-84079732 None:intergenic 20.0%
!!! ACTTAATCTAAATCTAAAGT+TGG + chr3.3:84079238-84079257 MS.gene38726:intron 20.0%
!!! ATCAATTTTCGTTTGAAATT+AGG + chr3.3:84078415-84078434 MS.gene38726:intron 20.0%
!!! ATTCTTTTTAATTTTTCAGC+TGG + chr3.3:84079344-84079363 MS.gene38726:intron 20.0%
!!! CATAGAAGTGTAAAAATAAA+TGG + chr3.3:84079811-84079830 MS.gene38726:intron 20.0%
!!! CTTTAATCAAGTTTTTGATA+TGG + chr3.3:84079521-84079540 MS.gene38726:CDS 20.0%
!!! TCAGTTTTATCTCAATAAAT+GGG + chr3.3:84079911-84079930 MS.gene38726:intron 20.0%
!!! TTCAGTTTTATCTCAATAAA+TGG + chr3.3:84079910-84079929 MS.gene38726:intron 20.0%
! CACAAAAAAAAAATGAGAAC+AGG - chr3.3:84079982-84080001 None:intergenic 25.0%
! GATTTAATGCATCTTTGTAT+TGG + chr3.3:84078897-84078916 MS.gene38726:intron 25.0%
! GGATAATCTTGAAACATAAA+AGG - chr3.3:84079850-84079869 None:intergenic 25.0%
! TAAATCCTAATTCGAAATGT+AGG + chr3.3:84078624-84078643 MS.gene38726:intron 25.0%
! TTAACAGAATAAGAGGATTA+AGG - chr3.3:84078387-84078406 None:intergenic 25.0%
!! TGTAACTTTTGCTAAAATCA+CGG - chr3.3:84078953-84078972 None:intergenic 25.0%
!!! TTATTTTACAATTGCCCATT+AGG - chr3.3:84079875-84079894 None:intergenic 25.0%
AAACATGCTTCAACAAAATC+AGG + chr3.3:84079048-84079067 MS.gene38726:intron 30.0%
AACATGCTTCAACAAAATCA+GGG + chr3.3:84079049-84079068 MS.gene38726:intron 30.0%
ACAGTGAATTTGCAAAATCA+CGG + chr3.3:84078988-84079007 MS.gene38726:intron 30.0%
ATGAACCTACATTTCGAATT+AGG - chr3.3:84078632-84078651 None:intergenic 30.0%
ATTGAAAATCAAAGTCCAGA+AGG - chr3.3:84079680-84079699 None:intergenic 30.0%
CTATGAAAAAGGGACAAATT+GGG + chr3.3:84079466-84079485 MS.gene38726:CDS 30.0%
GAGTTCTGTTATAACATGTA+TGG + chr3.3:84079118-84079137 MS.gene38726:intron 30.0%
TAGTGAGTTTCTTAGAATCA+AGG - chr3.3:84079021-84079040 None:intergenic 30.0%
TATGAAAAAGGGACAAATTG+GGG + chr3.3:84079467-84079486 MS.gene38726:CDS 30.0%
TCAAGATTATCCTTCCTAAT+GGG + chr3.3:84079858-84079877 MS.gene38726:intron 30.0%
TTCAAGATTATCCTTCCTAA+TGG + chr3.3:84079857-84079876 MS.gene38726:intron 30.0%
! ATTAAGGAGGATTTGAAATG+AGG - chr3.3:84078371-84078390 None:intergenic 30.0%
! TAAATTTTCATTCAGTCACG+TGG + chr3.3:84079416-84079435 MS.gene38726:CDS 30.0%
! TCATGAGAAATTTTTCTGCA+CGG + chr3.3:84078651-84078670 MS.gene38726:CDS 30.0%
! TTAAGGAGGATTTGAAATGA+GGG - chr3.3:84078370-84078389 None:intergenic 30.0%
! TTGTAACATCTAGTTTGAAG+TGG + chr3.3:84079303-84079322 MS.gene38726:intron 30.0%
!! TTCTTTTGAAAACTATCGCT+TGG - chr3.3:84079940-84079959 None:intergenic 30.0%
!!! AACCATTGGTTTTCTAGTAT+TGG - chr3.3:84079559-84079578 None:intergenic 30.0%
!!! TGTTTTAACATTGAACCAGA+CGG + chr3.3:84080000-84080019 MS.gene38726:intron 30.0%
AAGCTTCAATCACACACAAA+GGG - chr3.3:84079587-84079606 None:intergenic 35.0%
ACAGAATAAGAGGATTAAGG+AGG - chr3.3:84078384-84078403 None:intergenic 35.0%
AGATCATCTAATGCAGTAGT+AGG + chr3.3:84078867-84078886 MS.gene38726:intron 35.0%
AGTGATGAATTTAGAGGGAT+CGG - chr3.3:84078337-84078356 None:intergenic 35.0%
ATTACTCTGGTTGAAGAACT+TGG + chr3.3:84080120-84080139 MS.gene38726:CDS 35.0%
CACATTGCTGCTATGAAAAA+GGG + chr3.3:84079456-84079475 MS.gene38726:CDS 35.0%
CACCAATACTAGAAAACCAA+TGG + chr3.3:84079554-84079573 MS.gene38726:CDS 35.0%
CAGAACTCTAAGTGTATGTA+TGG - chr3.3:84079106-84079125 None:intergenic 35.0%
CCTACAGTGATGAATTTAGA+GGG - chr3.3:84078342-84078361 None:intergenic 35.0%
CTTTATCCTGGGGTAATTTA+TGG + chr3.3:84078748-84078767 MS.gene38726:CDS 35.0%
GCAAAAGTTACATGCATCTT+TGG + chr3.3:84078961-84078980 MS.gene38726:intron 35.0%
GCTATGAAAAAGGGACAAAT+TGG + chr3.3:84079465-84079484 MS.gene38726:CDS 35.0%
TAAGCTTCAATCACACACAA+AGG - chr3.3:84079588-84079607 None:intergenic 35.0%
TAAGTGTATGTATGGATGAG+TGG - chr3.3:84079098-84079117 None:intergenic 35.0%
TAATGCAGTAGTAGGATAGT+TGG + chr3.3:84078875-84078894 MS.gene38726:intron 35.0%
TCCTACAGTGATGAATTTAG+AGG - chr3.3:84078343-84078362 None:intergenic 35.0%
TGAAATTAGGTCAACGTTGA+AGG + chr3.3:84078428-84078447 MS.gene38726:intron 35.0%
TGAAGGTTTGAAGAATGTGT+TGG + chr3.3:84078445-84078464 MS.gene38726:CDS 35.0%
TGAATTTGCAAAATCACGGT+GGG + chr3.3:84078992-84079011 MS.gene38726:intron 35.0%
TTACTCTGGTTGAAGAACTT+GGG + chr3.3:84080121-84080140 MS.gene38726:CDS 35.0%
TTCTTACGAGAAAGCTAAAG+CGG + chr3.3:84080051-84080070 MS.gene38726:CDS 35.0%
TTGTGTGTGATTGAAGCTTA+TGG + chr3.3:84079588-84079607 MS.gene38726:CDS 35.0%
TTTACAATTGCCCATTAGGA+AGG - chr3.3:84079871-84079890 None:intergenic 35.0%
TTTGAAGAATGTGTTGGAAG+CGG + chr3.3:84078451-84078470 MS.gene38726:CDS 35.0%
! AAATCTAAAGTTGGAACAGC+CGG + chr3.3:84079247-84079266 MS.gene38726:intron 35.0%
! AACTTTTGCTAAAATCACGG+TGG - chr3.3:84078950-84078969 None:intergenic 35.0%
!! AATAGTGTTGCTTTATCCTG+GGG + chr3.3:84078738-84078757 MS.gene38726:CDS 35.0%
!! CAATAGTGTTGCTTTATCCT+GGG + chr3.3:84078737-84078756 MS.gene38726:CDS 35.0%
!! GTTTTAATCTCTCGAATCAC+TGG + chr3.3:84079621-84079640 MS.gene38726:CDS 35.0%
!!! GCATGTTTTAAGACATCGTT+GGG + chr3.3:84080024-84080043 MS.gene38726:CDS 35.0%
!!! TGCATGTTTTAAGACATCGT+TGG + chr3.3:84080023-84080042 MS.gene38726:CDS 35.0%
AAAAGGGACAAATTGGGGAA+AGG + chr3.3:84079472-84079491 MS.gene38726:CDS 40.0%
AACAAGTTTCTCCACTGTCT+TGG - chr3.3:84078486-84078505 None:intergenic 40.0%
AGGAAACGTTCTTGCAAAGA+TGG + chr3.3:84078789-84078808 MS.gene38726:CDS 40.0%
AGTGGTTAGCGACAAAATCA+CGG - chr3.3:84079080-84079099 None:intergenic 40.0%
CACAAAGGGATACTAACCAT+TGG - chr3.3:84079573-84079592 None:intergenic 40.0%
CACGGAGTATGAGAAATCAA+AGG + chr3.3:84078669-84078688 MS.gene38726:CDS 40.0%
CCAGGATAAAGCAACACTAT+TGG - chr3.3:84078739-84078758 None:intergenic 40.0%
CCCTCTAAATTCATCACTGT+AGG + chr3.3:84078339-84078358 MS.gene38726:intron 40.0%
GCACATTGCTGCTATGAAAA+AGG + chr3.3:84079455-84079474 MS.gene38726:CDS 40.0%
GGAGAGGAGAGATGAAAAAT+CGG - chr3.3:84078256-84078275 None:intergenic 40.0%
GGTAGATTACCTGGTTACAT+AGG + chr3.3:84079381-84079400 MS.gene38726:CDS 40.0%
GTGAATTTGCAAAATCACGG+TGG + chr3.3:84078991-84079010 MS.gene38726:intron 40.0%
GTGATGAATTTAGAGGGATC+GGG - chr3.3:84078336-84078355 None:intergenic 40.0%
GTGTGATTGAAGCTTATGGA+TGG + chr3.3:84079592-84079611 MS.gene38726:CDS 40.0%
TGATGAATTTAGAGGGATCG+GGG - chr3.3:84078335-84078354 None:intergenic 40.0%
TTACCTGGTTACATAGGCAA+AGG + chr3.3:84079387-84079406 MS.gene38726:CDS 40.0%
TTTCCTTTGCCTATGTAACC+AGG - chr3.3:84079393-84079412 None:intergenic 40.0%
! AATCTAAAGTTGGAACAGCC+GGG + chr3.3:84079248-84079267 MS.gene38726:intron 40.0%
! ATGCATCTTTGTATTGGCAG+CGG + chr3.3:84078903-84078922 MS.gene38726:intron 40.0%
! GTTACCTTTTATCAGTCCAC+CGG + chr3.3:84079647-84079666 MS.gene38726:CDS 40.0%
!! CCAATAGTGTTGCTTTATCC+TGG + chr3.3:84078736-84078755 MS.gene38726:CDS 40.0%
!! CGTTTTAGTGGTAGATTACC+TGG + chr3.3:84079372-84079391 MS.gene38726:CDS 40.0%
!! TGGGGAAAGGTATTTACTGA+CGG + chr3.3:84079485-84079504 MS.gene38726:CDS 40.0%
AAGTCCAGAAGGAAGCTTAC+CGG - chr3.3:84079669-84079688 None:intergenic 45.0%
AGTTACAGAGCTTTCCACCA+AGG - chr3.3:84078134-84078153 None:intergenic 45.0%
ATGAAGAAGGTTGTGGTGAC+CGG + chr3.3:84078096-84078115 MS.gene38726:CDS 45.0%
CCCTCTACCGAAATAGTCTA+CGG + chr3.3:84078222-84078241 MS.gene38726:CDS 45.0%
CCGTAGACTATTTCGGTAGA+GGG - chr3.3:84078225-84078244 None:intergenic 45.0%
CTGGTTGAAGAACTTGGGAT+TGG + chr3.3:84080126-84080145 MS.gene38726:CDS 45.0%
GATGTCGCCGTAGACTATTT+CGG - chr3.3:84078232-84078251 None:intergenic 45.0%
GCTTTGTAACACGAGTCAAG+TGG - chr3.3:84079157-84079176 None:intergenic 45.0%
GTCTTAAAACATGCACCGTC+TGG - chr3.3:84080018-84080037 None:intergenic 45.0%
TCAGCAATAGCTCCATCAGT+TGG - chr3.3:84078536-84078555 None:intergenic 45.0%
TTTGCTCTTGGACCAACTGA+TGG + chr3.3:84078521-84078540 MS.gene38726:CDS 45.0%
! CAGCTGGTAGAACGTTTTAG+TGG + chr3.3:84079360-84079379 MS.gene38726:intron 45.0%
! TGCATCTTTGTATTGGCAGC+GGG + chr3.3:84078904-84078923 MS.gene38726:intron 45.0%
! TTTCCTGCAGTGACTTTTCC+AGG - chr3.3:84078775-84078794 None:intergenic 45.0%
!! CTTACCGGTGGACTGATAAA+AGG - chr3.3:84079654-84079673 None:intergenic 45.0%
!! GGGGAAAGGTATTTACTGAC+GGG + chr3.3:84079486-84079505 MS.gene38726:CDS 45.0%
!!! ACGTCGTCGTTTTTTGCTCT+TGG + chr3.3:84078509-84078528 MS.gene38726:CDS 45.0%
AAACCCAGAAGCCTGAGAGA+AGG + chr3.3:84080085-84080104 MS.gene38726:CDS 50.0%
AACCCAGAAGCCTGAGAGAA+GGG + chr3.3:84080086-84080105 MS.gene38726:CDS 50.0%
CAGTCACGTGGATGATGTAG+TGG + chr3.3:84079428-84079447 MS.gene38726:CDS 50.0%
CCAGGTCCATAAATTACCCC+AGG - chr3.3:84078757-84078776 None:intergenic 50.0%
CCTGGGGTAATTTATGGACC+TGG + chr3.3:84078754-84078773 MS.gene38726:CDS 50.0%
GAGCTTTCCACCAAGGTAAC+CGG - chr3.3:84078127-84078146 None:intergenic 50.0%
GCCGTAGACTATTTCGGTAG+AGG - chr3.3:84078226-84078245 None:intergenic 50.0%
GGGTCTGACTATGACCTTGA+CGG - chr3.3:84078178-84078197 None:intergenic 50.0%
GGTGAAGCAAACCAAGACAG+TGG + chr3.3:84078472-84078491 MS.gene38726:CDS 50.0%
GGTTAGCGACAAAATCACGG+TGG - chr3.3:84079077-84079096 None:intergenic 50.0%
TCACGTGGATGATGTAGTGG+AGG + chr3.3:84079431-84079450 MS.gene38726:CDS 50.0%
TTCGGTAGAGGGAAGAAGTG+CGG - chr3.3:84078214-84078233 None:intergenic 50.0%
! ACGTGGATGATGTAGTGGAG+GGG + chr3.3:84079433-84079452 MS.gene38726:CDS 50.0%
! CACGTGGATGATGTAGTGGA+GGG + chr3.3:84079432-84079451 MS.gene38726:CDS 50.0%
!! GGCTTGCAGAGGTATTACTC+TGG + chr3.3:84080107-84080126 MS.gene38726:CDS 50.0%
AAGCCCTTCTCTCAGGCTTC+TGG - chr3.3:84080092-84080111 None:intergenic 55.0%
ACCAAGGTAACCGGATGCAC+CGG - chr3.3:84078118-84078137 None:intergenic 55.0%
AGAGCGGCAGTATGATGTCC+CGG - chr3.3:84079269-84079288 None:intergenic 55.0%
AGCCCTTCTCTCAGGCTTCT+GGG - chr3.3:84080091-84080110 None:intergenic 55.0%
AGCTCTGTAACTCCCTCCAC+CGG + chr3.3:84078142-84078161 MS.gene38726:CDS 55.0%
ATTGCAAGCTGCGTCTGAGG+GGG + chr3.3:84078711-84078730 MS.gene38726:CDS 55.0%
CATTGCAAGCTGCGTCTGAG+GGG + chr3.3:84078710-84078729 MS.gene38726:CDS 55.0%
CCTTGACGGAGTAACCTTGC+CGG - chr3.3:84078164-84078183 None:intergenic 55.0%
GCATTGCAAGCTGCGTCTGA+GGG + chr3.3:84078709-84078728 MS.gene38726:CDS 55.0%
GGACCTGGAAAAGTCACTGC+AGG + chr3.3:84078769-84078788 MS.gene38726:CDS 55.0%
GTGGAAGACGACGGAGCAAT+CGG - chr3.3:84078286-84078305 None:intergenic 55.0%
TCCACCGGTAAGCTTCCTTC+TGG + chr3.3:84079662-84079681 MS.gene38726:intron 55.0%
TCCAGAAGGAAGCTTACCGG+TGG - chr3.3:84079666-84079685 None:intergenic 55.0%
TGCATTGCAAGCTGCGTCTG+AGG + chr3.3:84078708-84078727 MS.gene38726:CDS 55.0%
! AAGAAGTGCGGAGAGATCGC+TGG - chr3.3:84078202-84078221 None:intergenic 55.0%
AAGTGCGGAGAGATCGCTGG+CGG - chr3.3:84078199-84078218 None:intergenic 60.0%
ACCGGTGCATCCGGTTACCT+TGG + chr3.3:84078114-84078133 MS.gene38726:CDS 60.0%
AGCAATCGGAGAAGGCGGAG+AGG - chr3.3:84078272-84078291 None:intergenic 60.0%
CCGGCAAGGTTACTCCGTCA+AGG + chr3.3:84078161-84078180 MS.gene38726:CDS 60.0%
CCTCTGCAAGCCCTTCTCTC+AGG - chr3.3:84080099-84080118 None:intergenic 60.0%
CCTGAGAGAAGGGCTTGCAG+AGG + chr3.3:84080096-84080115 MS.gene38726:CDS 60.0%
GACGACGGAGCAATCGGAGA+AGG - chr3.3:84078280-84078299 None:intergenic 60.0%
GACGGAGCAATCGGAGAAGG+CGG - chr3.3:84078277-84078296 None:intergenic 60.0%
GAGCCAGGGTTCAACGAGAG+CGG - chr3.3:84078313-84078332 None:intergenic 60.0%
GGAGTAACCTTGCCGGTGGA+GGG - chr3.3:84078157-84078176 None:intergenic 60.0%
GGTGCATCCGGTTACCTTGG+TGG + chr3.3:84078117-84078136 MS.gene38726:CDS 60.0%
GTTGTGGTGACCGGTGCATC+CGG + chr3.3:84078105-84078124 MS.gene38726:CDS 60.0%
TGACGGAGTAACCTTGCCGG+TGG - chr3.3:84078161-84078180 None:intergenic 60.0%
TGTAACTCCCTCCACCGGCA+AGG + chr3.3:84078147-84078166 MS.gene38726:CDS 60.0%
TTAGAGGGATCGGGGAGCCA+GGG - chr3.3:84078327-84078346 None:intergenic 60.0%
TTTAGAGGGATCGGGGAGCC+AGG - chr3.3:84078328-84078347 None:intergenic 60.0%
AGCGGCGAGGTGGAAGACGA+CGG - chr3.3:84078295-84078314 None:intergenic 65.0%
AGGGTTCAACGAGAGCGGCG+AGG - chr3.3:84078308-84078327 None:intergenic 65.0%
AGTGCGGAGAGATCGCTGGC+GGG - chr3.3:84078198-84078217 None:intergenic 65.0%
CGGAGTAACCTTGCCGGTGG+AGG - chr3.3:84078158-84078177 None:intergenic 65.0%
GTTCAACGAGAGCGGCGAGG+TGG - chr3.3:84078305-84078324 None:intergenic 65.0%
TCGCCGCTCTCGTTGAACCC+TGG + chr3.3:84078307-84078326 MS.gene38726:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 84078096 84080159 84078096 ID=MS.gene38726
chr3.3 mRNA 84078096 84080159 84078096 ID=MS.gene38726.t1;Parent=MS.gene38726
chr3.3 exon 84078096 84078356 84078096 ID=MS.gene38726.t1.exon1;Parent=MS.gene38726.t1
chr3.3 CDS 84078096 84078356 84078096 ID=cds.MS.gene38726.t1;Parent=MS.gene38726.t1
chr3.3 exon 84078437 84078565 84078437 ID=MS.gene38726.t1.exon2;Parent=MS.gene38726.t1
chr3.3 CDS 84078437 84078565 84078437 ID=cds.MS.gene38726.t1;Parent=MS.gene38726.t1
chr3.3 exon 84078646 84078810 84078646 ID=MS.gene38726.t1.exon3;Parent=MS.gene38726.t1
chr3.3 CDS 84078646 84078810 84078646 ID=cds.MS.gene38726.t1;Parent=MS.gene38726.t1
chr3.3 exon 84079363 84079668 84079363 ID=MS.gene38726.t1.exon4;Parent=MS.gene38726.t1
chr3.3 CDS 84079363 84079668 84079363 ID=cds.MS.gene38726.t1;Parent=MS.gene38726.t1
chr3.3 exon 84080019 84080159 84080019 ID=MS.gene38726.t1.exon5;Parent=MS.gene38726.t1
chr3.3 CDS 84080019 84080159 84080019 ID=cds.MS.gene38726.t1;Parent=MS.gene38726.t1
Gene Sequence

>MS.gene38726

ATGAAGAAGGTTGTGGTGACCGGTGCATCCGGTTACCTTGGTGGAAAGCTCTGTAACTCCCTCCACCGGCAAGGTTACTCCGTCAAGGTCATAGTCAGACCCGCCAGCGATCTCTCCGCACTTCTTCCCTCTACCGAAATAGTCTACGGCGACATCACCGATTTTTCATCTCTCCTCTCCGCCTTCTCCGATTGCTCCGTCGTCTTCCACCTCGCCGCTCTCGTTGAACCCTGGCTCCCCGATCCCTCTAAATTCATCACTGTAGGATTCTCCCTCATTTCAAATCCTCCTTAATCCTCTTATTCTGTTAATTAATTCAATCAATTTTCGTTTGAAATTAGGTCAACGTTGAAGGTTTGAAGAATGTGTTGGAAGCGGTGAAGCAAACCAAGACAGTGGAGAAACTTGTTTATACGTCGTCGTTTTTTGCTCTTGGACCAACTGATGGAGCTATTGCTGATGAGAATCAAGTACAATACATCAAATCAATACTTCCATTTTTGCTTTTTTAATTTTTTGTTTTTCTTCTAAATCCTAATTCGAAATGTAGGTTCATCATGAGAAATTTTTCTGCACGGAGTATGAGAAATCAAAGGTTGCTACTGATAAAATTGCATTGCAAGCTGCGTCTGAGGGGGTGCCAATAGTGTTGCTTTATCCTGGGGTAATTTATGGACCTGGAAAAGTCACTGCAGGAAACGTTCTTGCAAAGATGGTACTGTTTTATTTCTTCTTGTGTCTTCTGTTTTCTCATATGTTAATTTTGAAATTAGATCATCTAATGCAGTAGTAGGATAGTTGGATTTAATGCATCTTTGTATTGGCAGCGGGATTGTTAGAATCAGAGTGAACCACCGTGATTTTAGCAAAAGTTACATGCATCTTTGGTATCACAGTGAATTTGCAAAATCACGGTGGGTGACCTTGATTCTAAGAAACTCACTACGATATCAAACATGCTTCAACAAAATCAGGGTGCCACCGTGATTTTGTCGCTAACCACTCATCCATACATACACTTAGAGTTCTGTTATAACATGTATGGATACGCGCTGATTCCACTTGACTCGTGTTACAAAGCTGCTGTATGTTTGAAGCAATAAAGTATAGCTTTGAGTTAACGCACGTTGAAGTTTGTTTTCACTTAATCTAAATCTAAAGTTGGAACAGCCGGGACATCATACTGCCGCTCTAAATTTTGATTTTTTTGTAACATCTAGTTTGAAGTGGAAATGTTGTTTGATATTTATTCTTTTTAATTTTTCAGCTGGTAGAACGTTTTAGTGGTAGATTACCTGGTTACATAGGCAAAGGAAATGATAAATTTTCATTCAGTCACGTGGATGATGTAGTGGAGGGGCACATTGCTGCTATGAAAAAGGGACAAATTGGGGAAAGGTATTTACTGACGGGTGAAAATGCGTCCTTTAATCAAGTTTTTGATATGGCTGCTGTGATCACCAATACTAGAAAACCAATGGTTAGTATCCCTTTGTGTGTGATTGAAGCTTATGGATGGTTGTTAGTTTTAATCTCTCGAATCACTGGAAAGTTACCTTTTATCAGTCCACCGGTAAGCTTCCTTCTGGACTTTGATTTTCAATTTTCATGCATCCAAATCATATACTCTCTTATTTTTATCAGAAATTTTTAGCTGACAAATTGATATCTCAGTTAAAAATTTTGTAGACCAAATTTGTTTCAATGTTTAACTGCATAGAAGTGTAAAAATAAATGGCTAAACAAAAAATCCTTTTATGTTTCAAGATTATCCTTCCTAATGGGCAATTGTAAAATAAAATTTCATGGACAAATTCAGTTTTATCTCAATAAATGGGAAACCAAGCGATAGTTTTCAAAAGAAAATAAAGCATATTATCTTCCCTGTTCTCATTTTTTTTTTGTGTTTTAACATTGAACCAGACGGTGCATGTTTTAAGACATCGTTGGGAGTATTCTTACGAGAAAGCTAAAGCGGAGCTAGATTATAAACCCAGAAGCCTGAGAGAAGGGCTTGCAGAGGTATTACTCTGGTTGAAGAACTTGGGATTGGTACAATATTAG

Protein sequence

>MS.gene38726.t1

MKKVVVTGASGYLGGKLCNSLHRQGYSVKVIVRPASDLSALLPSTEIVYGDITDFSSLLSAFSDCSVVFHLAALVEPWLPDPSKFITVNVEGLKNVLEAVKQTKTVEKLVYTSSFFALGPTDGAIADENQVHHEKFFCTEYEKSKVATDKIALQAASEGVPIVLLYPGVIYGPGKVTAGNVLAKMLVERFSGRLPGYIGKGNDKFSFSHVDDVVEGHIAAMKKGQIGERYLLTGENASFNQVFDMAAVITNTRKPMVSIPLCVIEAYGWLLVLISRITGKLPFISPPTVHVLRHRWEYSYEKAKAELDYKPRSLREGLAEVLLWLKNLGLVQY