Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054632.t1 | XP_003603023.1 | 97.6 | 333 | 8 | 0 | 1 | 333 | 1 | 333 | 3.60E-184 | 654.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054632.t1 | P73212 | 30.2 | 338 | 214 | 9 | 6 | 332 | 15 | 341 | 7.2e-32 | 139.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054632.t1 | G7J6B7 | 97.6 | 333 | 8 | 0 | 1 | 333 | 1 | 333 | 2.6e-184 | 654.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene054632 | MS.gene38726 | 0.829381 | 5.31E-55 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene054632 | MS.gene063452 | PPI |
MS.gene86994 | MS.gene054632 | PPI |
MS.gene85957 | MS.gene054632 | PPI |
MS.gene054632 | MS.gene034244 | PPI |
MS.gene068659 | MS.gene054632 | PPI |
MS.gene054632 | MS.gene067468 | PPI |
MS.gene039215 | MS.gene054632 | PPI |
MS.gene054632 | MS.gene062821 | PPI |
MS.gene000616 | MS.gene054632 | PPI |
MS.gene053218 | MS.gene054632 | PPI |
MS.gene054632 | MS.gene83592 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054632.t1 | MTR_3g101500 | 97.598 | 333 | 8 | 0 | 1 | 333 | 1 | 333 | 0.0 | 668 |
MS.gene054632.t1 | MTR_3g101500 | 95.318 | 299 | 14 | 0 | 1 | 299 | 1 | 299 | 0.0 | 585 |
MS.gene054632.t1 | MTR_3g101500 | 96.316 | 190 | 7 | 0 | 1 | 190 | 1 | 190 | 2.65e-131 | 374 |
MS.gene054632.t1 | MTR_3g105440 | 26.074 | 349 | 221 | 13 | 5 | 322 | 10 | 352 | 3.61e-18 | 85.5 |
MS.gene054632.t1 | MTR_3g105440 | 26.074 | 349 | 221 | 13 | 5 | 322 | 10 | 352 | 4.96e-18 | 85.1 |
MS.gene054632.t1 | MTR_7g074820 | 26.316 | 285 | 172 | 8 | 3 | 260 | 7 | 280 | 2.04e-16 | 79.3 |
MS.gene054632.t1 | MTR_7g074850 | 26.074 | 326 | 197 | 10 | 3 | 302 | 7 | 314 | 3.10e-16 | 78.6 |
MS.gene054632.t1 | MTR_7g074710 | 27.668 | 253 | 150 | 9 | 3 | 230 | 7 | 251 | 3.58e-16 | 78.6 |
MS.gene054632.t1 | MTR_1g022445 | 26.523 | 279 | 174 | 10 | 4 | 260 | 8 | 277 | 2.79e-15 | 75.9 |
MS.gene054632.t1 | MTR_1g022440 | 26.071 | 280 | 174 | 11 | 4 | 260 | 8 | 277 | 7.67e-15 | 74.7 |
MS.gene054632.t1 | MTR_7g074880 | 24.561 | 285 | 174 | 9 | 3 | 260 | 7 | 277 | 3.39e-14 | 72.8 |
MS.gene054632.t1 | MTR_4g081440 | 24.014 | 279 | 178 | 10 | 3 | 250 | 19 | 294 | 5.12e-14 | 72.4 |
MS.gene054632.t1 | MTR_4g081440 | 24.014 | 279 | 178 | 10 | 3 | 250 | 23 | 298 | 5.18e-14 | 72.4 |
MS.gene054632.t1 | MTR_7g117190 | 26.897 | 290 | 147 | 15 | 3 | 242 | 6 | 280 | 1.04e-13 | 71.2 |
MS.gene054632.t1 | MTR_7g117190 | 26.897 | 290 | 147 | 15 | 3 | 242 | 6 | 280 | 1.06e-13 | 71.2 |
MS.gene054632.t1 | MTR_4g077130 | 25.806 | 279 | 178 | 7 | 2 | 260 | 7 | 276 | 1.61e-13 | 70.9 |
MS.gene054632.t1 | MTR_4g077100 | 25.180 | 278 | 181 | 9 | 2 | 260 | 9 | 278 | 2.51e-13 | 69.7 |
MS.gene054632.t1 | MTR_4g077100 | 25.180 | 278 | 181 | 9 | 2 | 260 | 9 | 278 | 5.25e-13 | 69.3 |
MS.gene054632.t1 | MTR_4g009040 | 26.705 | 352 | 199 | 14 | 2 | 332 | 11 | 324 | 1.00e-12 | 68.6 |
MS.gene054632.t1 | MTR_2g028620 | 29.020 | 255 | 144 | 13 | 4 | 231 | 10 | 254 | 1.36e-12 | 67.8 |
MS.gene054632.t1 | MTR_2g028620 | 29.020 | 255 | 144 | 13 | 4 | 231 | 10 | 254 | 1.37e-12 | 68.2 |
MS.gene054632.t1 | MTR_4g009040 | 26.404 | 356 | 199 | 14 | 2 | 332 | 11 | 328 | 2.58e-12 | 67.0 |
MS.gene054632.t1 | MTR_8g062110 | 26.295 | 251 | 159 | 8 | 2 | 232 | 7 | 251 | 4.81e-12 | 65.9 |
MS.gene054632.t1 | MTR_2g073240 | 23.868 | 243 | 170 | 6 | 2 | 230 | 19 | 260 | 4.82e-12 | 67.4 |
MS.gene054632.t1 | MTR_0034s0060 | 23.457 | 243 | 171 | 6 | 2 | 230 | 137 | 378 | 5.23e-12 | 67.4 |
MS.gene054632.t1 | MTR_8g062110 | 26.295 | 251 | 159 | 8 | 2 | 232 | 7 | 251 | 5.52e-12 | 65.9 |
MS.gene054632.t1 | MTR_5g072620 | 27.200 | 250 | 157 | 8 | 2 | 231 | 3 | 247 | 5.98e-12 | 65.9 |
MS.gene054632.t1 | MTR_8g062110 | 26.295 | 251 | 159 | 8 | 2 | 232 | 7 | 251 | 9.31e-12 | 65.5 |
MS.gene054632.t1 | MTR_8g062110 | 26.295 | 251 | 159 | 8 | 2 | 232 | 16 | 260 | 1.11e-11 | 65.5 |
MS.gene054632.t1 | MTR_2g013250 | 25.806 | 279 | 163 | 13 | 3 | 242 | 6 | 279 | 2.85e-11 | 64.3 |
MS.gene054632.t1 | MTR_4g009690 | 27.635 | 351 | 196 | 13 | 2 | 332 | 11 | 323 | 3.42e-11 | 63.9 |
MS.gene054632.t1 | MTR_4g009690 | 27.887 | 355 | 191 | 14 | 2 | 332 | 11 | 324 | 6.15e-11 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene054632.t1 | AT4G33360 | 70.997 | 331 | 96 | 0 | 3 | 333 | 14 | 344 | 0.0 | 513 |
MS.gene054632.t1 | AT4G33360 | 71.562 | 320 | 91 | 0 | 3 | 322 | 2 | 321 | 8.95e-179 | 498 |
MS.gene054632.t1 | AT4G33360 | 71.930 | 285 | 80 | 0 | 3 | 287 | 14 | 298 | 3.04e-160 | 450 |
MS.gene054632.t1 | AT1G09490 | 31.818 | 264 | 155 | 8 | 2 | 245 | 6 | 264 | 1.75e-23 | 99.0 |
MS.gene054632.t1 | AT1G09480 | 29.924 | 264 | 160 | 8 | 2 | 245 | 6 | 264 | 4.27e-22 | 95.1 |
MS.gene054632.t1 | AT1G09480 | 29.924 | 264 | 160 | 8 | 2 | 245 | 53 | 311 | 7.99e-22 | 95.1 |
MS.gene054632.t1 | AT1G09510 | 30.798 | 263 | 153 | 10 | 2 | 242 | 6 | 261 | 1.71e-20 | 90.9 |
MS.gene054632.t1 | AT1G61720 | 27.138 | 269 | 171 | 6 | 2 | 245 | 11 | 279 | 1.31e-17 | 82.8 |
MS.gene054632.t1 | AT1G09490 | 30.918 | 207 | 127 | 6 | 50 | 245 | 32 | 233 | 5.99e-17 | 80.5 |
MS.gene054632.t1 | AT2G45400 | 26.389 | 288 | 170 | 10 | 4 | 260 | 40 | 316 | 4.19e-15 | 75.5 |
MS.gene054632.t1 | AT2G45400 | 26.102 | 295 | 176 | 10 | 4 | 267 | 40 | 323 | 5.76e-15 | 75.5 |
MS.gene054632.t1 | AT1G66800 | 27.519 | 258 | 164 | 8 | 2 | 242 | 6 | 257 | 1.02e-14 | 74.3 |
MS.gene054632.t1 | AT5G58490 | 30.085 | 236 | 138 | 8 | 4 | 218 | 9 | 238 | 1.48e-14 | 73.9 |
MS.gene054632.t1 | AT1G09500 | 28.516 | 256 | 153 | 9 | 2 | 234 | 6 | 254 | 2.39e-14 | 72.8 |
MS.gene054632.t1 | AT5G19440 | 26.836 | 354 | 202 | 14 | 2 | 333 | 8 | 326 | 3.39e-14 | 72.8 |
MS.gene054632.t1 | AT1G09500 | 28.516 | 256 | 153 | 9 | 2 | 234 | 6 | 254 | 4.22e-14 | 72.4 |
MS.gene054632.t1 | AT1G53500 | 25.514 | 243 | 166 | 6 | 2 | 230 | 9 | 250 | 1.31e-13 | 72.0 |
MS.gene054632.t1 | AT2G02400 | 27.519 | 258 | 164 | 10 | 2 | 241 | 4 | 256 | 2.16e-13 | 70.5 |
MS.gene054632.t1 | AT2G23910 | 25.899 | 278 | 170 | 10 | 4 | 260 | 10 | 272 | 3.79e-13 | 68.9 |
MS.gene054632.t1 | AT2G23910 | 25.899 | 278 | 170 | 10 | 4 | 260 | 10 | 272 | 4.06e-13 | 68.9 |
MS.gene054632.t1 | AT1G51410 | 28.195 | 266 | 162 | 9 | 2 | 245 | 7 | 265 | 5.90e-13 | 68.9 |
MS.gene054632.t1 | AT2G23910 | 26.619 | 278 | 168 | 11 | 4 | 260 | 10 | 272 | 6.25e-13 | 68.9 |
MS.gene054632.t1 | AT2G33590 | 27.165 | 254 | 156 | 10 | 3 | 234 | 8 | 254 | 5.09e-12 | 66.2 |
MS.gene054632.t1 | AT5G14700 | 29.082 | 196 | 112 | 8 | 4 | 173 | 55 | 249 | 7.03e-12 | 65.5 |
MS.gene054632.t1 | AT2G45400 | 29.592 | 196 | 112 | 7 | 4 | 173 | 40 | 235 | 1.05e-11 | 64.7 |
MS.gene054632.t1 | AT5G14700 | 29.082 | 196 | 112 | 8 | 4 | 173 | 55 | 249 | 1.48e-11 | 65.1 |
MS.gene054632.t1 | AT1G80820 | 29.435 | 248 | 150 | 10 | 2 | 232 | 6 | 245 | 4.78e-11 | 62.8 |
Find 92 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTTATCCTGGGGTAATTTA+TGG | 0.110220 | 3.4:+89415383 | MS.gene054632:CDS |
AAGCCCTTCTCTCAGGCTTC+TGG | 0.219625 | 3.4:-89416724 | None:intergenic |
GCACATTGCTGCTATGAAAA+AGG | 0.255767 | 3.4:+89416090 | MS.gene054632:CDS |
TTGTGTGTGATTGAAGCTTA+TGG | 0.293479 | 3.4:+89416223 | MS.gene054632:CDS |
CCAATAGTGTTGCTTTATCC+TGG | 0.298721 | 3.4:+89415371 | MS.gene054632:CDS |
CTTACCGGTGGACTGATAAA+AGG | 0.344492 | 3.4:-89416286 | None:intergenic |
AGCCCTTCTCTCAGGCTTCT+GGG | 0.368707 | 3.4:-89416723 | None:intergenic |
ATTACTCTGGTTGAAGAACT+TGG | 0.390223 | 3.4:+89416755 | MS.gene054632:CDS |
TTTAGAGGGATCGGGGAGCC+AGG | 0.391159 | 3.4:-89414960 | None:intergenic |
TTTGCTCTTGGACCAACTGA+TGG | 0.422894 | 3.4:+89415156 | MS.gene054632:CDS |
CAATAGTGTTGCTTTATCCT+GGG | 0.434363 | 3.4:+89415372 | MS.gene054632:CDS |
TGAAATTAGGTCAACGTTGA+AGG | 0.442193 | 3.4:+89415063 | MS.gene054632:intron |
TCTTACAGTGATGAATTTAG+AGG | 0.452733 | 3.4:-89414975 | None:intergenic |
GAGCTTTCCACCAAGGTAAC+CGG | 0.454097 | 3.4:-89414759 | None:intergenic |
AACAAGTTTCTCCACTGTCT+TGG | 0.460174 | 3.4:-89415118 | None:intergenic |
CCTTGACGGAGTAACCTTGC+CGG | 0.465146 | 3.4:-89414796 | None:intergenic |
CCAGGATAAAGCAACACTAT+TGG | 0.469005 | 3.4:-89415371 | None:intergenic |
GTGGAAGACGACGGAGCAAT+CGG | 0.472753 | 3.4:-89414918 | None:intergenic |
GTTGTGGTGACCGGTGCATC+CGG | 0.479262 | 3.4:+89414740 | MS.gene054632:CDS |
CCTGGGGTAATTTATGGACC+TGG | 0.479761 | 3.4:+89415389 | MS.gene054632:CDS |
GTGATGAATTTAGAGGGATC+GGG | 0.481282 | 3.4:-89414968 | None:intergenic |
ACCGGTGCATCCGGTTACCT+TGG | 0.487879 | 3.4:+89414749 | MS.gene054632:CDS |
AGTGATGAATTTAGAGGGAT+CGG | 0.492886 | 3.4:-89414969 | None:intergenic |
TGCATTGCAAGCTGCGTCTG+AGG | 0.495160 | 3.4:+89415343 | MS.gene054632:CDS |
CGGAGTAACCTTGCCGGTGG+AGG | 0.498534 | 3.4:-89414790 | None:intergenic |
CCTCTGCAAGCCCTTCTCTC+AGG | 0.502858 | 3.4:-89416731 | None:intergenic |
GACGACGGAGCAATCGGAGA+AGG | 0.508216 | 3.4:-89414912 | None:intergenic |
CTGGTTGAAGAACTTGGGAT+TGG | 0.511734 | 3.4:+89416761 | MS.gene054632:CDS |
GCATTGCAAGCTGCGTCTGA+GGG | 0.514048 | 3.4:+89415344 | MS.gene054632:CDS |
TTACTCTGGTTGAAGAACTT+GGG | 0.518823 | 3.4:+89416756 | MS.gene054632:CDS |
AGGAAACGTTCTTGCAAAGA+TGG | 0.521510 | 3.4:+89415424 | MS.gene054632:CDS |
TCGCCGCTCTCGTTGAACCC+TGG | 0.524911 | 3.4:+89414942 | MS.gene054632:CDS |
AACCCAGAAGCCTGAGAGAA+GGG | 0.528826 | 3.4:+89416721 | MS.gene054632:CDS |
CCAGGTCCATAAATTACCCC+AGG | 0.529788 | 3.4:-89415389 | None:intergenic |
GGTGCATCCGGTTACCTTGG+TGG | 0.530784 | 3.4:+89414752 | MS.gene054632:CDS |
TTTCCTTTGCCTATGTAACC+AGG | 0.531525 | 3.4:-89416025 | None:intergenic |
GGGGAAAGGTATTTACTGAC+GGG | 0.541865 | 3.4:+89416121 | MS.gene054632:CDS |
TTAGAGGGATCGGGGAGCCA+GGG | 0.553029 | 3.4:-89414959 | None:intergenic |
AAGCTTCAATCACACACAAA+GGG | 0.553221 | 3.4:-89416219 | None:intergenic |
GGAGTAACCTTGCCGGTGGA+GGG | 0.554584 | 3.4:-89414789 | None:intergenic |
GGTAGATTACCTGGTTACAT+AGG | 0.554685 | 3.4:+89416016 | MS.gene054632:CDS |
GCCGTAGACTATTTCGGTAG+AGG | 0.554834 | 3.4:-89414858 | None:intergenic |
ATGAAGAAGGTTGTGGTGAC+CGG | 0.557804 | 3.4:+89414731 | MS.gene054632:CDS |
CCCTCTACCGAAATAGTCTA+CGG | 0.558374 | 3.4:+89414857 | MS.gene054632:CDS |
TAGGGTGAAAGGAATGAAGA+AGG | 0.560617 | 3.4:+89414718 | None:intergenic |
AGGAAGTGCGGAGAGATCGC+TGG | 0.560868 | 3.4:-89414834 | None:intergenic |
GATGTCGCCGTAGACTATTT+CGG | 0.563374 | 3.4:-89414864 | None:intergenic |
ACCAAGGTAACCGGATGCAC+CGG | 0.568156 | 3.4:-89414750 | None:intergenic |
GGGTCTGACTATGACCTTGA+CGG | 0.570927 | 3.4:-89414810 | None:intergenic |
GTGTGATTGAAGCTTATGGA+TGG | 0.572510 | 3.4:+89416227 | MS.gene054632:CDS |
GGACCTGGAAAAGTCACTGC+AGG | 0.573017 | 3.4:+89415404 | MS.gene054632:CDS |
GACGGAGCAATCGGAGAAGG+CGG | 0.574794 | 3.4:-89414909 | None:intergenic |
TGAAGGTTTGAAGAATGTGT+TGG | 0.575694 | 3.4:+89415080 | MS.gene054632:CDS |
TGGGGAAAGGTATTTACTGA+CGG | 0.577303 | 3.4:+89416120 | MS.gene054632:CDS |
CTTACAGTGATGAATTTAGA+GGG | 0.578231 | 3.4:-89414974 | None:intergenic |
CCGTAGACTATTTCGGTAGA+GGG | 0.579428 | 3.4:-89414857 | None:intergenic |
AAACCCAGAAGCCTGAGAGA+AGG | 0.580491 | 3.4:+89416720 | MS.gene054632:CDS |
CACAAAGGGATACTAACCAT+TGG | 0.587521 | 3.4:-89416205 | None:intergenic |
CACCAATACTAGAAAACCAA+TGG | 0.590719 | 3.4:+89416189 | MS.gene054632:CDS |
ATTGCAAGCTGCGTCTGAGG+GGG | 0.592571 | 3.4:+89415346 | MS.gene054632:CDS |
TTCTTACGAGAAAGCTAAAG+CGG | 0.594506 | 3.4:+89416686 | MS.gene054632:CDS |
AAGTGCGGAGAGATCGCTGG+TGG | 0.596182 | 3.4:-89414831 | None:intergenic |
CACGTGGATGATGTAGTGGA+GGG | 0.597809 | 3.4:+89416067 | MS.gene054632:CDS |
AAAAGGGACAAATTGGGGAA+AGG | 0.597895 | 3.4:+89416107 | MS.gene054632:CDS |
TCACGTGGATGATGTAGTGG+AGG | 0.604726 | 3.4:+89416066 | MS.gene054632:CDS |
TTACCTGGTTACATAGGCAA+AGG | 0.607299 | 3.4:+89416022 | MS.gene054632:CDS |
CAGTCACGTGGATGATGTAG+TGG | 0.608268 | 3.4:+89416063 | MS.gene054632:CDS |
TTCGGTAGAGGGAGGAAGTG+CGG | 0.608399 | 3.4:-89414846 | None:intergenic |
TCAGCAATAGCTCCATCAGT+TGG | 0.610570 | 3.4:-89415168 | None:intergenic |
GGCTTGCAGAGGTATTACTC+TGG | 0.610945 | 3.4:+89416742 | MS.gene054632:CDS |
AGCAATCGGAGAAGGCGGAG+AGG | 0.612030 | 3.4:-89414904 | None:intergenic |
AATAGTGTTGCTTTATCCTG+GGG | 0.612704 | 3.4:+89415373 | MS.gene054632:CDS |
GAAAGGAATGAAGAAGGTTG+TGG | 0.615924 | 3.4:+89414724 | None:intergenic |
TTTGAAGAATGTGTTGGAAG+CGG | 0.617316 | 3.4:+89415086 | MS.gene054632:CDS |
TGTAACTCCCTCCACCGGCA+AGG | 0.622930 | 3.4:+89414782 | MS.gene054632:CDS |
TAAGCTTCAATCACACACAA+AGG | 0.625443 | 3.4:-89416220 | None:intergenic |
CCTGAGAGAAGGGCTTGCAG+AGG | 0.625831 | 3.4:+89416731 | MS.gene054632:CDS |
TGATGAATTTAGAGGGATCG+GGG | 0.632493 | 3.4:-89414967 | None:intergenic |
GAGCCAGGGTTCAACGAGAG+CGG | 0.635737 | 3.4:-89414945 | None:intergenic |
AGCGGCGAGGTGGAAGACGA+CGG | 0.637580 | 3.4:-89414927 | None:intergenic |
GTTCAACGAGAGCGGCGAGG+TGG | 0.638189 | 3.4:-89414937 | None:intergenic |
AGCTCTGTAACTCCCTCCAC+CGG | 0.638268 | 3.4:+89414777 | MS.gene054632:CDS |
CACGGAGTATGAGAAATCAA+AGG | 0.645350 | 3.4:+89415304 | MS.gene054632:CDS |
AGTTACAGAGCTTTCCACCA+AGG | 0.655017 | 3.4:-89414766 | None:intergenic |
TGACGGAGTAACCTTGCCGG+TGG | 0.655172 | 3.4:-89414793 | None:intergenic |
CCGGCAAGGTTACTCCGTCA+AGG | 0.659151 | 3.4:+89414796 | MS.gene054632:CDS |
AGTGCGGAGAGATCGCTGGT+GGG | 0.664599 | 3.4:-89414830 | None:intergenic |
CATTGCAAGCTGCGTCTGAG+GGG | 0.665679 | 3.4:+89415345 | MS.gene054632:CDS |
TAGACTATTTCGGTAGAGGG+AGG | 0.666208 | 3.4:-89414854 | None:intergenic |
AGGGTTCAACGAGAGCGGCG+AGG | 0.708116 | 3.4:-89414940 | None:intergenic |
ACGTGGATGATGTAGTGGAG+GGG | 0.712851 | 3.4:+89416068 | MS.gene054632:CDS |
GGTGAAGCAAACCAAGACAG+TGG | 0.722877 | 3.4:+89415107 | MS.gene054632:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAATTAAAAAAGCAAAAA+TGG | - | chr3.4:89415228-89415247 | None:intergenic | 10.0% |
!! | AATTGTAAAATAAAATTTCA+TGG | + | chr3.4:89416517-89416536 | MS.gene054632:intron | 10.0% |
!! | AAAAAAATCAAAATTTAGAG+CGG | - | chr3.4:89415920-89415939 | None:intergenic | 15.0% |
!! | AAATAAGATAGTATATGATT+TGG | - | chr3.4:89416348-89416367 | None:intergenic | 15.0% |
!! | ACAAAAAAAAAATGAGAACA+GGG | - | chr3.4:89416616-89416635 | None:intergenic | 20.0% |
!! | CATATCAAAAACTTGATTAA+AGG | - | chr3.4:89416158-89416177 | None:intergenic | 20.0% |
!! | GAATTAATTAACAGAATAAG+AGG | - | chr3.4:89415029-89415048 | None:intergenic | 20.0% |
!! | GTTAAACATTGAAACAAATT+TGG | - | chr3.4:89416424-89416443 | None:intergenic | 20.0% |
!!! | ACTTAATCTAAATCTAAAGT+TGG | + | chr3.4:89415873-89415892 | MS.gene054632:intron | 20.0% |
!!! | ATCAATTTTCGTTTGAAATT+AGG | + | chr3.4:89415050-89415069 | MS.gene054632:intron | 20.0% |
!!! | ATTCTTTTTAATTTTTCAGC+TGG | + | chr3.4:89415979-89415998 | MS.gene054632:intron | 20.0% |
!!! | CATAGAAGTGTAAAAATAAA+TGG | + | chr3.4:89416446-89416465 | MS.gene054632:intron | 20.0% |
!!! | CTTTAATCAAGTTTTTGATA+TGG | + | chr3.4:89416156-89416175 | MS.gene054632:CDS | 20.0% |
!!! | TCAGTTTTATCTCAATAAAT+GGG | + | chr3.4:89416546-89416565 | MS.gene054632:intron | 20.0% |
!!! | TTCAGTTTTATCTCAATAAA+TGG | + | chr3.4:89416545-89416564 | MS.gene054632:intron | 20.0% |
! | CACAAAAAAAAAATGAGAAC+AGG | - | chr3.4:89416617-89416636 | None:intergenic | 25.0% |
! | GATTTAATGCATCTTTGTAT+TGG | + | chr3.4:89415532-89415551 | MS.gene054632:intron | 25.0% |
! | GGATAATCTTGAAACATAAA+AGG | - | chr3.4:89416485-89416504 | None:intergenic | 25.0% |
! | TAAATCCTAATTCGAAATGT+AGG | + | chr3.4:89415259-89415278 | MS.gene054632:intron | 25.0% |
! | TTAACAGAATAAGAGGATTA+AGG | - | chr3.4:89415022-89415041 | None:intergenic | 25.0% |
!! | TGTAACTTTTGCTAAAATCA+CGG | - | chr3.4:89415588-89415607 | None:intergenic | 25.0% |
!!! | TTATTTTACAATTGCCCATT+AGG | - | chr3.4:89416510-89416529 | None:intergenic | 25.0% |
AAACATGCTTCAACAAAATC+AGG | + | chr3.4:89415683-89415702 | MS.gene054632:intron | 30.0% | |
AACATGCTTCAACAAAATCA+GGG | + | chr3.4:89415684-89415703 | MS.gene054632:intron | 30.0% | |
ACAGTGAATTTGCAAAATCA+CGG | + | chr3.4:89415623-89415642 | MS.gene054632:intron | 30.0% | |
ATGAACCTACATTTCGAATT+AGG | - | chr3.4:89415267-89415286 | None:intergenic | 30.0% | |
ATTGAAAATCAAAGTCCAGA+AGG | - | chr3.4:89416315-89416334 | None:intergenic | 30.0% | |
CTATGAAAAAGGGACAAATT+GGG | + | chr3.4:89416101-89416120 | MS.gene054632:CDS | 30.0% | |
CTTACAGTGATGAATTTAGA+GGG | - | chr3.4:89414977-89414996 | None:intergenic | 30.0% | |
GAGTTCTGTTATAACATGTA+TGG | + | chr3.4:89415753-89415772 | MS.gene054632:intron | 30.0% | |
TAGTGAGTTTCTTAGAATCA+AGG | - | chr3.4:89415656-89415675 | None:intergenic | 30.0% | |
TATGAAAAAGGGACAAATTG+GGG | + | chr3.4:89416102-89416121 | MS.gene054632:CDS | 30.0% | |
TCAAGATTATCCTTCCTAAT+GGG | + | chr3.4:89416493-89416512 | MS.gene054632:intron | 30.0% | |
TCTTACAGTGATGAATTTAG+AGG | - | chr3.4:89414978-89414997 | None:intergenic | 30.0% | |
TTCAAGATTATCCTTCCTAA+TGG | + | chr3.4:89416492-89416511 | MS.gene054632:intron | 30.0% | |
! | ATTAAGGAGGATTTGAAATG+AGG | - | chr3.4:89415006-89415025 | None:intergenic | 30.0% |
! | TAAATTTTCATTCAGTCACG+TGG | + | chr3.4:89416051-89416070 | MS.gene054632:CDS | 30.0% |
! | TCATGAGAAATTTTTCTGCA+CGG | + | chr3.4:89415286-89415305 | MS.gene054632:CDS | 30.0% |
! | TTAAGGAGGATTTGAAATGA+GGG | - | chr3.4:89415005-89415024 | None:intergenic | 30.0% |
! | TTGTAACATCTAGTTTGAAG+TGG | + | chr3.4:89415938-89415957 | MS.gene054632:intron | 30.0% |
!! | TTCTTTTGAAAACTATCGCT+TGG | - | chr3.4:89416575-89416594 | None:intergenic | 30.0% |
!!! | AACCATTGGTTTTCTAGTAT+TGG | - | chr3.4:89416194-89416213 | None:intergenic | 30.0% |
!!! | TGTTTTAACATTGAACCAGA+CGG | + | chr3.4:89416635-89416654 | MS.gene054632:intron | 30.0% |
AAGCTTCAATCACACACAAA+GGG | - | chr3.4:89416222-89416241 | None:intergenic | 35.0% | |
ACAGAATAAGAGGATTAAGG+AGG | - | chr3.4:89415019-89415038 | None:intergenic | 35.0% | |
AGATCATCTAATGCAGTAGT+AGG | + | chr3.4:89415502-89415521 | MS.gene054632:intron | 35.0% | |
AGTGATGAATTTAGAGGGAT+CGG | - | chr3.4:89414972-89414991 | None:intergenic | 35.0% | |
ATTACTCTGGTTGAAGAACT+TGG | + | chr3.4:89416755-89416774 | MS.gene054632:CDS | 35.0% | |
CACATTGCTGCTATGAAAAA+GGG | + | chr3.4:89416091-89416110 | MS.gene054632:CDS | 35.0% | |
CACCAATACTAGAAAACCAA+TGG | + | chr3.4:89416189-89416208 | MS.gene054632:CDS | 35.0% | |
CAGAACTCTAAGTGTATGTA+TGG | - | chr3.4:89415741-89415760 | None:intergenic | 35.0% | |
CTTTATCCTGGGGTAATTTA+TGG | + | chr3.4:89415383-89415402 | MS.gene054632:CDS | 35.0% | |
GCAAAAGTTACATGCATCTT+TGG | + | chr3.4:89415596-89415615 | MS.gene054632:intron | 35.0% | |
GCTATGAAAAAGGGACAAAT+TGG | + | chr3.4:89416100-89416119 | MS.gene054632:CDS | 35.0% | |
TAAGCTTCAATCACACACAA+AGG | - | chr3.4:89416223-89416242 | None:intergenic | 35.0% | |
TAAGTGTATGTATGGATGAG+TGG | - | chr3.4:89415733-89415752 | None:intergenic | 35.0% | |
TAATGCAGTAGTAGGATAGT+TGG | + | chr3.4:89415510-89415529 | MS.gene054632:intron | 35.0% | |
TGAAATTAGGTCAACGTTGA+AGG | + | chr3.4:89415063-89415082 | MS.gene054632:intron | 35.0% | |
TGAAGGTTTGAAGAATGTGT+TGG | + | chr3.4:89415080-89415099 | MS.gene054632:CDS | 35.0% | |
TGAATTTGCAAAATCACGGT+GGG | + | chr3.4:89415627-89415646 | MS.gene054632:intron | 35.0% | |
TTACTCTGGTTGAAGAACTT+GGG | + | chr3.4:89416756-89416775 | MS.gene054632:CDS | 35.0% | |
TTCTTACGAGAAAGCTAAAG+CGG | + | chr3.4:89416686-89416705 | MS.gene054632:CDS | 35.0% | |
TTGTGTGTGATTGAAGCTTA+TGG | + | chr3.4:89416223-89416242 | MS.gene054632:CDS | 35.0% | |
TTTACAATTGCCCATTAGGA+AGG | - | chr3.4:89416506-89416525 | None:intergenic | 35.0% | |
TTTGAAGAATGTGTTGGAAG+CGG | + | chr3.4:89415086-89415105 | MS.gene054632:CDS | 35.0% | |
! | AAATCTAAAGTTGGAACAGC+CGG | + | chr3.4:89415882-89415901 | MS.gene054632:intron | 35.0% |
! | AACTTTTGCTAAAATCACGG+TGG | - | chr3.4:89415585-89415604 | None:intergenic | 35.0% |
!! | AATAGTGTTGCTTTATCCTG+GGG | + | chr3.4:89415373-89415392 | MS.gene054632:CDS | 35.0% |
!! | CAATAGTGTTGCTTTATCCT+GGG | + | chr3.4:89415372-89415391 | MS.gene054632:CDS | 35.0% |
!! | GTTTTAATCTCTCGAATCAC+TGG | + | chr3.4:89416256-89416275 | MS.gene054632:CDS | 35.0% |
!!! | GCATGTTTTAAGACATCGTT+GGG | + | chr3.4:89416659-89416678 | MS.gene054632:CDS | 35.0% |
!!! | TGCATGTTTTAAGACATCGT+TGG | + | chr3.4:89416658-89416677 | MS.gene054632:CDS | 35.0% |
AAAAGGGACAAATTGGGGAA+AGG | + | chr3.4:89416107-89416126 | MS.gene054632:CDS | 40.0% | |
AACAAGTTTCTCCACTGTCT+TGG | - | chr3.4:89415121-89415140 | None:intergenic | 40.0% | |
AGGAAACGTTCTTGCAAAGA+TGG | + | chr3.4:89415424-89415443 | MS.gene054632:CDS | 40.0% | |
AGTGGTTAGCGACAAAATCA+CGG | - | chr3.4:89415715-89415734 | None:intergenic | 40.0% | |
CACAAAGGGATACTAACCAT+TGG | - | chr3.4:89416208-89416227 | None:intergenic | 40.0% | |
CACGGAGTATGAGAAATCAA+AGG | + | chr3.4:89415304-89415323 | MS.gene054632:CDS | 40.0% | |
CCAGGATAAAGCAACACTAT+TGG | - | chr3.4:89415374-89415393 | None:intergenic | 40.0% | |
GCACATTGCTGCTATGAAAA+AGG | + | chr3.4:89416090-89416109 | MS.gene054632:CDS | 40.0% | |
GGAGAGGAGAGATGAAAAAT+CGG | - | chr3.4:89414891-89414910 | None:intergenic | 40.0% | |
GGTAGATTACCTGGTTACAT+AGG | + | chr3.4:89416016-89416035 | MS.gene054632:CDS | 40.0% | |
GTGAATTTGCAAAATCACGG+TGG | + | chr3.4:89415626-89415645 | MS.gene054632:intron | 40.0% | |
GTGATGAATTTAGAGGGATC+GGG | - | chr3.4:89414971-89414990 | None:intergenic | 40.0% | |
GTGTGATTGAAGCTTATGGA+TGG | + | chr3.4:89416227-89416246 | MS.gene054632:CDS | 40.0% | |
TGATGAATTTAGAGGGATCG+GGG | - | chr3.4:89414970-89414989 | None:intergenic | 40.0% | |
TTACCTGGTTACATAGGCAA+AGG | + | chr3.4:89416022-89416041 | MS.gene054632:CDS | 40.0% | |
TTTCCTTTGCCTATGTAACC+AGG | - | chr3.4:89416028-89416047 | None:intergenic | 40.0% | |
! | AATCTAAAGTTGGAACAGCC+GGG | + | chr3.4:89415883-89415902 | MS.gene054632:intron | 40.0% |
! | ATGCATCTTTGTATTGGCAG+CGG | + | chr3.4:89415538-89415557 | MS.gene054632:intron | 40.0% |
! | GTTACCTTTTATCAGTCCAC+CGG | + | chr3.4:89416282-89416301 | MS.gene054632:CDS | 40.0% |
!! | CCAATAGTGTTGCTTTATCC+TGG | + | chr3.4:89415371-89415390 | MS.gene054632:CDS | 40.0% |
!! | CGTTTTAGTGGTAGATTACC+TGG | + | chr3.4:89416007-89416026 | MS.gene054632:CDS | 40.0% |
!! | TGGGGAAAGGTATTTACTGA+CGG | + | chr3.4:89416120-89416139 | MS.gene054632:CDS | 40.0% |
AAGTCCAGAAGGAAGCTTAC+CGG | - | chr3.4:89416304-89416323 | None:intergenic | 45.0% | |
AGTTACAGAGCTTTCCACCA+AGG | - | chr3.4:89414769-89414788 | None:intergenic | 45.0% | |
ATGAAGAAGGTTGTGGTGAC+CGG | + | chr3.4:89414731-89414750 | MS.gene054632:CDS | 45.0% | |
CCCTCTACCGAAATAGTCTA+CGG | + | chr3.4:89414857-89414876 | MS.gene054632:CDS | 45.0% | |
CCGTAGACTATTTCGGTAGA+GGG | - | chr3.4:89414860-89414879 | None:intergenic | 45.0% | |
CTGGTTGAAGAACTTGGGAT+TGG | + | chr3.4:89416761-89416780 | MS.gene054632:CDS | 45.0% | |
GATGTCGCCGTAGACTATTT+CGG | - | chr3.4:89414867-89414886 | None:intergenic | 45.0% | |
GCTTTGTAACACGAGTCAAG+CGG | - | chr3.4:89415792-89415811 | None:intergenic | 45.0% | |
GTCTTAAAACATGCACCGTC+TGG | - | chr3.4:89416653-89416672 | None:intergenic | 45.0% | |
TAGACTATTTCGGTAGAGGG+AGG | - | chr3.4:89414857-89414876 | None:intergenic | 45.0% | |
TCAGCAATAGCTCCATCAGT+TGG | - | chr3.4:89415171-89415190 | None:intergenic | 45.0% | |
TTTGCTCTTGGACCAACTGA+TGG | + | chr3.4:89415156-89415175 | MS.gene054632:CDS | 45.0% | |
! | CAGCTGGTAGAACGTTTTAG+TGG | + | chr3.4:89415995-89416014 | MS.gene054632:intron | 45.0% |
! | TGCATCTTTGTATTGGCAGC+GGG | + | chr3.4:89415539-89415558 | MS.gene054632:intron | 45.0% |
! | TTTCCTGCAGTGACTTTTCC+AGG | - | chr3.4:89415410-89415429 | None:intergenic | 45.0% |
!! | CTTACCGGTGGACTGATAAA+AGG | - | chr3.4:89416289-89416308 | None:intergenic | 45.0% |
!! | GGGGAAAGGTATTTACTGAC+GGG | + | chr3.4:89416121-89416140 | MS.gene054632:CDS | 45.0% |
!!! | ACGTCGTCGTTTTTTGCTCT+TGG | + | chr3.4:89415144-89415163 | MS.gene054632:CDS | 45.0% |
AAACCCAGAAGCCTGAGAGA+AGG | + | chr3.4:89416720-89416739 | MS.gene054632:CDS | 50.0% | |
AACCCAGAAGCCTGAGAGAA+GGG | + | chr3.4:89416721-89416740 | MS.gene054632:CDS | 50.0% | |
CAGTCACGTGGATGATGTAG+TGG | + | chr3.4:89416063-89416082 | MS.gene054632:CDS | 50.0% | |
CCAGGTCCATAAATTACCCC+AGG | - | chr3.4:89415392-89415411 | None:intergenic | 50.0% | |
CCTGGGGTAATTTATGGACC+TGG | + | chr3.4:89415389-89415408 | MS.gene054632:CDS | 50.0% | |
GAGCTTTCCACCAAGGTAAC+CGG | - | chr3.4:89414762-89414781 | None:intergenic | 50.0% | |
GCCGTAGACTATTTCGGTAG+AGG | - | chr3.4:89414861-89414880 | None:intergenic | 50.0% | |
GGGTCTGACTATGACCTTGA+CGG | - | chr3.4:89414813-89414832 | None:intergenic | 50.0% | |
GGTGAAGCAAACCAAGACAG+TGG | + | chr3.4:89415107-89415126 | MS.gene054632:CDS | 50.0% | |
GGTTAGCGACAAAATCACGG+TGG | - | chr3.4:89415712-89415731 | None:intergenic | 50.0% | |
TCACGTGGATGATGTAGTGG+AGG | + | chr3.4:89416066-89416085 | MS.gene054632:CDS | 50.0% | |
! | ACGTGGATGATGTAGTGGAG+GGG | + | chr3.4:89416068-89416087 | MS.gene054632:CDS | 50.0% |
! | CACGTGGATGATGTAGTGGA+GGG | + | chr3.4:89416067-89416086 | MS.gene054632:CDS | 50.0% |
!! | GGCTTGCAGAGGTATTACTC+TGG | + | chr3.4:89416742-89416761 | MS.gene054632:CDS | 50.0% |
AAGCCCTTCTCTCAGGCTTC+TGG | - | chr3.4:89416727-89416746 | None:intergenic | 55.0% | |
ACCAAGGTAACCGGATGCAC+CGG | - | chr3.4:89414753-89414772 | None:intergenic | 55.0% | |
AGAGCGGCAGTATGATGTCC+CGG | - | chr3.4:89415904-89415923 | None:intergenic | 55.0% | |
AGCCCTTCTCTCAGGCTTCT+GGG | - | chr3.4:89416726-89416745 | None:intergenic | 55.0% | |
AGCTCTGTAACTCCCTCCAC+CGG | + | chr3.4:89414777-89414796 | MS.gene054632:CDS | 55.0% | |
ATTGCAAGCTGCGTCTGAGG+GGG | + | chr3.4:89415346-89415365 | MS.gene054632:CDS | 55.0% | |
CATTGCAAGCTGCGTCTGAG+GGG | + | chr3.4:89415345-89415364 | MS.gene054632:CDS | 55.0% | |
CCTTGACGGAGTAACCTTGC+CGG | - | chr3.4:89414799-89414818 | None:intergenic | 55.0% | |
GCATTGCAAGCTGCGTCTGA+GGG | + | chr3.4:89415344-89415363 | MS.gene054632:CDS | 55.0% | |
GGACCTGGAAAAGTCACTGC+AGG | + | chr3.4:89415404-89415423 | MS.gene054632:CDS | 55.0% | |
GTGGAAGACGACGGAGCAAT+CGG | - | chr3.4:89414921-89414940 | None:intergenic | 55.0% | |
TCCACCGGTAAGCTTCCTTC+TGG | + | chr3.4:89416297-89416316 | MS.gene054632:intron | 55.0% | |
TCCAGAAGGAAGCTTACCGG+TGG | - | chr3.4:89416301-89416320 | None:intergenic | 55.0% | |
TGCATTGCAAGCTGCGTCTG+AGG | + | chr3.4:89415343-89415362 | MS.gene054632:CDS | 55.0% | |
TTCGGTAGAGGGAGGAAGTG+CGG | - | chr3.4:89414849-89414868 | None:intergenic | 55.0% | |
AAGTGCGGAGAGATCGCTGG+TGG | - | chr3.4:89414834-89414853 | None:intergenic | 60.0% | |
ACCGGTGCATCCGGTTACCT+TGG | + | chr3.4:89414749-89414768 | MS.gene054632:CDS | 60.0% | |
AGCAATCGGAGAAGGCGGAG+AGG | - | chr3.4:89414907-89414926 | None:intergenic | 60.0% | |
AGTGCGGAGAGATCGCTGGT+GGG | - | chr3.4:89414833-89414852 | None:intergenic | 60.0% | |
CCGGCAAGGTTACTCCGTCA+AGG | + | chr3.4:89414796-89414815 | MS.gene054632:CDS | 60.0% | |
CCTCTGCAAGCCCTTCTCTC+AGG | - | chr3.4:89416734-89416753 | None:intergenic | 60.0% | |
CCTGAGAGAAGGGCTTGCAG+AGG | + | chr3.4:89416731-89416750 | MS.gene054632:CDS | 60.0% | |
GACGACGGAGCAATCGGAGA+AGG | - | chr3.4:89414915-89414934 | None:intergenic | 60.0% | |
GACGGAGCAATCGGAGAAGG+CGG | - | chr3.4:89414912-89414931 | None:intergenic | 60.0% | |
GAGCCAGGGTTCAACGAGAG+CGG | - | chr3.4:89414948-89414967 | None:intergenic | 60.0% | |
GGAGTAACCTTGCCGGTGGA+GGG | - | chr3.4:89414792-89414811 | None:intergenic | 60.0% | |
GGTGCATCCGGTTACCTTGG+TGG | + | chr3.4:89414752-89414771 | MS.gene054632:CDS | 60.0% | |
GTTGTGGTGACCGGTGCATC+CGG | + | chr3.4:89414740-89414759 | MS.gene054632:CDS | 60.0% | |
TGACGGAGTAACCTTGCCGG+TGG | - | chr3.4:89414796-89414815 | None:intergenic | 60.0% | |
TGTAACTCCCTCCACCGGCA+AGG | + | chr3.4:89414782-89414801 | MS.gene054632:CDS | 60.0% | |
TTAGAGGGATCGGGGAGCCA+GGG | - | chr3.4:89414962-89414981 | None:intergenic | 60.0% | |
TTTAGAGGGATCGGGGAGCC+AGG | - | chr3.4:89414963-89414982 | None:intergenic | 60.0% | |
! | AGGAAGTGCGGAGAGATCGC+TGG | - | chr3.4:89414837-89414856 | None:intergenic | 60.0% |
AGCGGCGAGGTGGAAGACGA+CGG | - | chr3.4:89414930-89414949 | None:intergenic | 65.0% | |
AGGGTTCAACGAGAGCGGCG+AGG | - | chr3.4:89414943-89414962 | None:intergenic | 65.0% | |
CGGAGTAACCTTGCCGGTGG+AGG | - | chr3.4:89414793-89414812 | None:intergenic | 65.0% | |
GTTCAACGAGAGCGGCGAGG+TGG | - | chr3.4:89414940-89414959 | None:intergenic | 65.0% | |
TCGCCGCTCTCGTTGAACCC+TGG | + | chr3.4:89414942-89414961 | MS.gene054632:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 89414731 | 89416794 | 89414731 | ID=MS.gene054632 |
chr3.4 | mRNA | 89414731 | 89416794 | 89414731 | ID=MS.gene054632.t1;Parent=MS.gene054632 |
chr3.4 | exon | 89414731 | 89414991 | 89414731 | ID=MS.gene054632.t1.exon1;Parent=MS.gene054632.t1 |
chr3.4 | CDS | 89414731 | 89414991 | 89414731 | ID=cds.MS.gene054632.t1;Parent=MS.gene054632.t1 |
chr3.4 | exon | 89415072 | 89415200 | 89415072 | ID=MS.gene054632.t1.exon2;Parent=MS.gene054632.t1 |
chr3.4 | CDS | 89415072 | 89415200 | 89415072 | ID=cds.MS.gene054632.t1;Parent=MS.gene054632.t1 |
chr3.4 | exon | 89415281 | 89415445 | 89415281 | ID=MS.gene054632.t1.exon3;Parent=MS.gene054632.t1 |
chr3.4 | CDS | 89415281 | 89415445 | 89415281 | ID=cds.MS.gene054632.t1;Parent=MS.gene054632.t1 |
chr3.4 | exon | 89415998 | 89416303 | 89415998 | ID=MS.gene054632.t1.exon4;Parent=MS.gene054632.t1 |
chr3.4 | CDS | 89415998 | 89416303 | 89415998 | ID=cds.MS.gene054632.t1;Parent=MS.gene054632.t1 |
chr3.4 | exon | 89416654 | 89416794 | 89416654 | ID=MS.gene054632.t1.exon5;Parent=MS.gene054632.t1 |
chr3.4 | CDS | 89416654 | 89416794 | 89416654 | ID=cds.MS.gene054632.t1;Parent=MS.gene054632.t1 |
Gene Sequence |
Protein sequence |