AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054632


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054632.t1 MTR_3g101500 97.598 333 8 0 1 333 1 333 0.0 668
MS.gene054632.t1 MTR_3g101500 95.318 299 14 0 1 299 1 299 0.0 585
MS.gene054632.t1 MTR_3g101500 96.316 190 7 0 1 190 1 190 2.65e-131 374
MS.gene054632.t1 MTR_3g105440 26.074 349 221 13 5 322 10 352 3.61e-18 85.5
MS.gene054632.t1 MTR_3g105440 26.074 349 221 13 5 322 10 352 4.96e-18 85.1
MS.gene054632.t1 MTR_7g074820 26.316 285 172 8 3 260 7 280 2.04e-16 79.3
MS.gene054632.t1 MTR_7g074850 26.074 326 197 10 3 302 7 314 3.10e-16 78.6
MS.gene054632.t1 MTR_7g074710 27.668 253 150 9 3 230 7 251 3.58e-16 78.6
MS.gene054632.t1 MTR_1g022445 26.523 279 174 10 4 260 8 277 2.79e-15 75.9
MS.gene054632.t1 MTR_1g022440 26.071 280 174 11 4 260 8 277 7.67e-15 74.7
MS.gene054632.t1 MTR_7g074880 24.561 285 174 9 3 260 7 277 3.39e-14 72.8
MS.gene054632.t1 MTR_4g081440 24.014 279 178 10 3 250 19 294 5.12e-14 72.4
MS.gene054632.t1 MTR_4g081440 24.014 279 178 10 3 250 23 298 5.18e-14 72.4
MS.gene054632.t1 MTR_7g117190 26.897 290 147 15 3 242 6 280 1.04e-13 71.2
MS.gene054632.t1 MTR_7g117190 26.897 290 147 15 3 242 6 280 1.06e-13 71.2
MS.gene054632.t1 MTR_4g077130 25.806 279 178 7 2 260 7 276 1.61e-13 70.9
MS.gene054632.t1 MTR_4g077100 25.180 278 181 9 2 260 9 278 2.51e-13 69.7
MS.gene054632.t1 MTR_4g077100 25.180 278 181 9 2 260 9 278 5.25e-13 69.3
MS.gene054632.t1 MTR_4g009040 26.705 352 199 14 2 332 11 324 1.00e-12 68.6
MS.gene054632.t1 MTR_2g028620 29.020 255 144 13 4 231 10 254 1.36e-12 67.8
MS.gene054632.t1 MTR_2g028620 29.020 255 144 13 4 231 10 254 1.37e-12 68.2
MS.gene054632.t1 MTR_4g009040 26.404 356 199 14 2 332 11 328 2.58e-12 67.0
MS.gene054632.t1 MTR_8g062110 26.295 251 159 8 2 232 7 251 4.81e-12 65.9
MS.gene054632.t1 MTR_2g073240 23.868 243 170 6 2 230 19 260 4.82e-12 67.4
MS.gene054632.t1 MTR_0034s0060 23.457 243 171 6 2 230 137 378 5.23e-12 67.4
MS.gene054632.t1 MTR_8g062110 26.295 251 159 8 2 232 7 251 5.52e-12 65.9
MS.gene054632.t1 MTR_5g072620 27.200 250 157 8 2 231 3 247 5.98e-12 65.9
MS.gene054632.t1 MTR_8g062110 26.295 251 159 8 2 232 7 251 9.31e-12 65.5
MS.gene054632.t1 MTR_8g062110 26.295 251 159 8 2 232 16 260 1.11e-11 65.5
MS.gene054632.t1 MTR_2g013250 25.806 279 163 13 3 242 6 279 2.85e-11 64.3
MS.gene054632.t1 MTR_4g009690 27.635 351 196 13 2 332 11 323 3.42e-11 63.9
MS.gene054632.t1 MTR_4g009690 27.887 355 191 14 2 332 11 324 6.15e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054632.t1 AT4G33360 70.997 331 96 0 3 333 14 344 0.0 513
MS.gene054632.t1 AT4G33360 71.562 320 91 0 3 322 2 321 8.95e-179 498
MS.gene054632.t1 AT4G33360 71.930 285 80 0 3 287 14 298 3.04e-160 450
MS.gene054632.t1 AT1G09490 31.818 264 155 8 2 245 6 264 1.75e-23 99.0
MS.gene054632.t1 AT1G09480 29.924 264 160 8 2 245 6 264 4.27e-22 95.1
MS.gene054632.t1 AT1G09480 29.924 264 160 8 2 245 53 311 7.99e-22 95.1
MS.gene054632.t1 AT1G09510 30.798 263 153 10 2 242 6 261 1.71e-20 90.9
MS.gene054632.t1 AT1G61720 27.138 269 171 6 2 245 11 279 1.31e-17 82.8
MS.gene054632.t1 AT1G09490 30.918 207 127 6 50 245 32 233 5.99e-17 80.5
MS.gene054632.t1 AT2G45400 26.389 288 170 10 4 260 40 316 4.19e-15 75.5
MS.gene054632.t1 AT2G45400 26.102 295 176 10 4 267 40 323 5.76e-15 75.5
MS.gene054632.t1 AT1G66800 27.519 258 164 8 2 242 6 257 1.02e-14 74.3
MS.gene054632.t1 AT5G58490 30.085 236 138 8 4 218 9 238 1.48e-14 73.9
MS.gene054632.t1 AT1G09500 28.516 256 153 9 2 234 6 254 2.39e-14 72.8
MS.gene054632.t1 AT5G19440 26.836 354 202 14 2 333 8 326 3.39e-14 72.8
MS.gene054632.t1 AT1G09500 28.516 256 153 9 2 234 6 254 4.22e-14 72.4
MS.gene054632.t1 AT1G53500 25.514 243 166 6 2 230 9 250 1.31e-13 72.0
MS.gene054632.t1 AT2G02400 27.519 258 164 10 2 241 4 256 2.16e-13 70.5
MS.gene054632.t1 AT2G23910 25.899 278 170 10 4 260 10 272 3.79e-13 68.9
MS.gene054632.t1 AT2G23910 25.899 278 170 10 4 260 10 272 4.06e-13 68.9
MS.gene054632.t1 AT1G51410 28.195 266 162 9 2 245 7 265 5.90e-13 68.9
MS.gene054632.t1 AT2G23910 26.619 278 168 11 4 260 10 272 6.25e-13 68.9
MS.gene054632.t1 AT2G33590 27.165 254 156 10 3 234 8 254 5.09e-12 66.2
MS.gene054632.t1 AT5G14700 29.082 196 112 8 4 173 55 249 7.03e-12 65.5
MS.gene054632.t1 AT2G45400 29.592 196 112 7 4 173 40 235 1.05e-11 64.7
MS.gene054632.t1 AT5G14700 29.082 196 112 8 4 173 55 249 1.48e-11 65.1
MS.gene054632.t1 AT1G80820 29.435 248 150 10 2 232 6 245 4.78e-11 62.8

Find 92 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTATCCTGGGGTAATTTA+TGG 0.110220 3.4:+89415383 MS.gene054632:CDS
AAGCCCTTCTCTCAGGCTTC+TGG 0.219625 3.4:-89416724 None:intergenic
GCACATTGCTGCTATGAAAA+AGG 0.255767 3.4:+89416090 MS.gene054632:CDS
TTGTGTGTGATTGAAGCTTA+TGG 0.293479 3.4:+89416223 MS.gene054632:CDS
CCAATAGTGTTGCTTTATCC+TGG 0.298721 3.4:+89415371 MS.gene054632:CDS
CTTACCGGTGGACTGATAAA+AGG 0.344492 3.4:-89416286 None:intergenic
AGCCCTTCTCTCAGGCTTCT+GGG 0.368707 3.4:-89416723 None:intergenic
ATTACTCTGGTTGAAGAACT+TGG 0.390223 3.4:+89416755 MS.gene054632:CDS
TTTAGAGGGATCGGGGAGCC+AGG 0.391159 3.4:-89414960 None:intergenic
TTTGCTCTTGGACCAACTGA+TGG 0.422894 3.4:+89415156 MS.gene054632:CDS
CAATAGTGTTGCTTTATCCT+GGG 0.434363 3.4:+89415372 MS.gene054632:CDS
TGAAATTAGGTCAACGTTGA+AGG 0.442193 3.4:+89415063 MS.gene054632:intron
TCTTACAGTGATGAATTTAG+AGG 0.452733 3.4:-89414975 None:intergenic
GAGCTTTCCACCAAGGTAAC+CGG 0.454097 3.4:-89414759 None:intergenic
AACAAGTTTCTCCACTGTCT+TGG 0.460174 3.4:-89415118 None:intergenic
CCTTGACGGAGTAACCTTGC+CGG 0.465146 3.4:-89414796 None:intergenic
CCAGGATAAAGCAACACTAT+TGG 0.469005 3.4:-89415371 None:intergenic
GTGGAAGACGACGGAGCAAT+CGG 0.472753 3.4:-89414918 None:intergenic
GTTGTGGTGACCGGTGCATC+CGG 0.479262 3.4:+89414740 MS.gene054632:CDS
CCTGGGGTAATTTATGGACC+TGG 0.479761 3.4:+89415389 MS.gene054632:CDS
GTGATGAATTTAGAGGGATC+GGG 0.481282 3.4:-89414968 None:intergenic
ACCGGTGCATCCGGTTACCT+TGG 0.487879 3.4:+89414749 MS.gene054632:CDS
AGTGATGAATTTAGAGGGAT+CGG 0.492886 3.4:-89414969 None:intergenic
TGCATTGCAAGCTGCGTCTG+AGG 0.495160 3.4:+89415343 MS.gene054632:CDS
CGGAGTAACCTTGCCGGTGG+AGG 0.498534 3.4:-89414790 None:intergenic
CCTCTGCAAGCCCTTCTCTC+AGG 0.502858 3.4:-89416731 None:intergenic
GACGACGGAGCAATCGGAGA+AGG 0.508216 3.4:-89414912 None:intergenic
CTGGTTGAAGAACTTGGGAT+TGG 0.511734 3.4:+89416761 MS.gene054632:CDS
GCATTGCAAGCTGCGTCTGA+GGG 0.514048 3.4:+89415344 MS.gene054632:CDS
TTACTCTGGTTGAAGAACTT+GGG 0.518823 3.4:+89416756 MS.gene054632:CDS
AGGAAACGTTCTTGCAAAGA+TGG 0.521510 3.4:+89415424 MS.gene054632:CDS
TCGCCGCTCTCGTTGAACCC+TGG 0.524911 3.4:+89414942 MS.gene054632:CDS
AACCCAGAAGCCTGAGAGAA+GGG 0.528826 3.4:+89416721 MS.gene054632:CDS
CCAGGTCCATAAATTACCCC+AGG 0.529788 3.4:-89415389 None:intergenic
GGTGCATCCGGTTACCTTGG+TGG 0.530784 3.4:+89414752 MS.gene054632:CDS
TTTCCTTTGCCTATGTAACC+AGG 0.531525 3.4:-89416025 None:intergenic
GGGGAAAGGTATTTACTGAC+GGG 0.541865 3.4:+89416121 MS.gene054632:CDS
TTAGAGGGATCGGGGAGCCA+GGG 0.553029 3.4:-89414959 None:intergenic
AAGCTTCAATCACACACAAA+GGG 0.553221 3.4:-89416219 None:intergenic
GGAGTAACCTTGCCGGTGGA+GGG 0.554584 3.4:-89414789 None:intergenic
GGTAGATTACCTGGTTACAT+AGG 0.554685 3.4:+89416016 MS.gene054632:CDS
GCCGTAGACTATTTCGGTAG+AGG 0.554834 3.4:-89414858 None:intergenic
ATGAAGAAGGTTGTGGTGAC+CGG 0.557804 3.4:+89414731 MS.gene054632:CDS
CCCTCTACCGAAATAGTCTA+CGG 0.558374 3.4:+89414857 MS.gene054632:CDS
TAGGGTGAAAGGAATGAAGA+AGG 0.560617 3.4:+89414718 None:intergenic
AGGAAGTGCGGAGAGATCGC+TGG 0.560868 3.4:-89414834 None:intergenic
GATGTCGCCGTAGACTATTT+CGG 0.563374 3.4:-89414864 None:intergenic
ACCAAGGTAACCGGATGCAC+CGG 0.568156 3.4:-89414750 None:intergenic
GGGTCTGACTATGACCTTGA+CGG 0.570927 3.4:-89414810 None:intergenic
GTGTGATTGAAGCTTATGGA+TGG 0.572510 3.4:+89416227 MS.gene054632:CDS
GGACCTGGAAAAGTCACTGC+AGG 0.573017 3.4:+89415404 MS.gene054632:CDS
GACGGAGCAATCGGAGAAGG+CGG 0.574794 3.4:-89414909 None:intergenic
TGAAGGTTTGAAGAATGTGT+TGG 0.575694 3.4:+89415080 MS.gene054632:CDS
TGGGGAAAGGTATTTACTGA+CGG 0.577303 3.4:+89416120 MS.gene054632:CDS
CTTACAGTGATGAATTTAGA+GGG 0.578231 3.4:-89414974 None:intergenic
CCGTAGACTATTTCGGTAGA+GGG 0.579428 3.4:-89414857 None:intergenic
AAACCCAGAAGCCTGAGAGA+AGG 0.580491 3.4:+89416720 MS.gene054632:CDS
CACAAAGGGATACTAACCAT+TGG 0.587521 3.4:-89416205 None:intergenic
CACCAATACTAGAAAACCAA+TGG 0.590719 3.4:+89416189 MS.gene054632:CDS
ATTGCAAGCTGCGTCTGAGG+GGG 0.592571 3.4:+89415346 MS.gene054632:CDS
TTCTTACGAGAAAGCTAAAG+CGG 0.594506 3.4:+89416686 MS.gene054632:CDS
AAGTGCGGAGAGATCGCTGG+TGG 0.596182 3.4:-89414831 None:intergenic
CACGTGGATGATGTAGTGGA+GGG 0.597809 3.4:+89416067 MS.gene054632:CDS
AAAAGGGACAAATTGGGGAA+AGG 0.597895 3.4:+89416107 MS.gene054632:CDS
TCACGTGGATGATGTAGTGG+AGG 0.604726 3.4:+89416066 MS.gene054632:CDS
TTACCTGGTTACATAGGCAA+AGG 0.607299 3.4:+89416022 MS.gene054632:CDS
CAGTCACGTGGATGATGTAG+TGG 0.608268 3.4:+89416063 MS.gene054632:CDS
TTCGGTAGAGGGAGGAAGTG+CGG 0.608399 3.4:-89414846 None:intergenic
TCAGCAATAGCTCCATCAGT+TGG 0.610570 3.4:-89415168 None:intergenic
GGCTTGCAGAGGTATTACTC+TGG 0.610945 3.4:+89416742 MS.gene054632:CDS
AGCAATCGGAGAAGGCGGAG+AGG 0.612030 3.4:-89414904 None:intergenic
AATAGTGTTGCTTTATCCTG+GGG 0.612704 3.4:+89415373 MS.gene054632:CDS
GAAAGGAATGAAGAAGGTTG+TGG 0.615924 3.4:+89414724 None:intergenic
TTTGAAGAATGTGTTGGAAG+CGG 0.617316 3.4:+89415086 MS.gene054632:CDS
TGTAACTCCCTCCACCGGCA+AGG 0.622930 3.4:+89414782 MS.gene054632:CDS
TAAGCTTCAATCACACACAA+AGG 0.625443 3.4:-89416220 None:intergenic
CCTGAGAGAAGGGCTTGCAG+AGG 0.625831 3.4:+89416731 MS.gene054632:CDS
TGATGAATTTAGAGGGATCG+GGG 0.632493 3.4:-89414967 None:intergenic
GAGCCAGGGTTCAACGAGAG+CGG 0.635737 3.4:-89414945 None:intergenic
AGCGGCGAGGTGGAAGACGA+CGG 0.637580 3.4:-89414927 None:intergenic
GTTCAACGAGAGCGGCGAGG+TGG 0.638189 3.4:-89414937 None:intergenic
AGCTCTGTAACTCCCTCCAC+CGG 0.638268 3.4:+89414777 MS.gene054632:CDS
CACGGAGTATGAGAAATCAA+AGG 0.645350 3.4:+89415304 MS.gene054632:CDS
AGTTACAGAGCTTTCCACCA+AGG 0.655017 3.4:-89414766 None:intergenic
TGACGGAGTAACCTTGCCGG+TGG 0.655172 3.4:-89414793 None:intergenic
CCGGCAAGGTTACTCCGTCA+AGG 0.659151 3.4:+89414796 MS.gene054632:CDS
AGTGCGGAGAGATCGCTGGT+GGG 0.664599 3.4:-89414830 None:intergenic
CATTGCAAGCTGCGTCTGAG+GGG 0.665679 3.4:+89415345 MS.gene054632:CDS
TAGACTATTTCGGTAGAGGG+AGG 0.666208 3.4:-89414854 None:intergenic
AGGGTTCAACGAGAGCGGCG+AGG 0.708116 3.4:-89414940 None:intergenic
ACGTGGATGATGTAGTGGAG+GGG 0.712851 3.4:+89416068 MS.gene054632:CDS
GGTGAAGCAAACCAAGACAG+TGG 0.722877 3.4:+89415107 MS.gene054632:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTAAAAAAGCAAAAA+TGG - chr3.4:89415228-89415247 None:intergenic 10.0%
!! AATTGTAAAATAAAATTTCA+TGG + chr3.4:89416517-89416536 MS.gene054632:intron 10.0%
!! AAAAAAATCAAAATTTAGAG+CGG - chr3.4:89415920-89415939 None:intergenic 15.0%
!! AAATAAGATAGTATATGATT+TGG - chr3.4:89416348-89416367 None:intergenic 15.0%
!! ACAAAAAAAAAATGAGAACA+GGG - chr3.4:89416616-89416635 None:intergenic 20.0%
!! CATATCAAAAACTTGATTAA+AGG - chr3.4:89416158-89416177 None:intergenic 20.0%
!! GAATTAATTAACAGAATAAG+AGG - chr3.4:89415029-89415048 None:intergenic 20.0%
!! GTTAAACATTGAAACAAATT+TGG - chr3.4:89416424-89416443 None:intergenic 20.0%
!!! ACTTAATCTAAATCTAAAGT+TGG + chr3.4:89415873-89415892 MS.gene054632:intron 20.0%
!!! ATCAATTTTCGTTTGAAATT+AGG + chr3.4:89415050-89415069 MS.gene054632:intron 20.0%
!!! ATTCTTTTTAATTTTTCAGC+TGG + chr3.4:89415979-89415998 MS.gene054632:intron 20.0%
!!! CATAGAAGTGTAAAAATAAA+TGG + chr3.4:89416446-89416465 MS.gene054632:intron 20.0%
!!! CTTTAATCAAGTTTTTGATA+TGG + chr3.4:89416156-89416175 MS.gene054632:CDS 20.0%
!!! TCAGTTTTATCTCAATAAAT+GGG + chr3.4:89416546-89416565 MS.gene054632:intron 20.0%
!!! TTCAGTTTTATCTCAATAAA+TGG + chr3.4:89416545-89416564 MS.gene054632:intron 20.0%
! CACAAAAAAAAAATGAGAAC+AGG - chr3.4:89416617-89416636 None:intergenic 25.0%
! GATTTAATGCATCTTTGTAT+TGG + chr3.4:89415532-89415551 MS.gene054632:intron 25.0%
! GGATAATCTTGAAACATAAA+AGG - chr3.4:89416485-89416504 None:intergenic 25.0%
! TAAATCCTAATTCGAAATGT+AGG + chr3.4:89415259-89415278 MS.gene054632:intron 25.0%
! TTAACAGAATAAGAGGATTA+AGG - chr3.4:89415022-89415041 None:intergenic 25.0%
!! TGTAACTTTTGCTAAAATCA+CGG - chr3.4:89415588-89415607 None:intergenic 25.0%
!!! TTATTTTACAATTGCCCATT+AGG - chr3.4:89416510-89416529 None:intergenic 25.0%
AAACATGCTTCAACAAAATC+AGG + chr3.4:89415683-89415702 MS.gene054632:intron 30.0%
AACATGCTTCAACAAAATCA+GGG + chr3.4:89415684-89415703 MS.gene054632:intron 30.0%
ACAGTGAATTTGCAAAATCA+CGG + chr3.4:89415623-89415642 MS.gene054632:intron 30.0%
ATGAACCTACATTTCGAATT+AGG - chr3.4:89415267-89415286 None:intergenic 30.0%
ATTGAAAATCAAAGTCCAGA+AGG - chr3.4:89416315-89416334 None:intergenic 30.0%
CTATGAAAAAGGGACAAATT+GGG + chr3.4:89416101-89416120 MS.gene054632:CDS 30.0%
CTTACAGTGATGAATTTAGA+GGG - chr3.4:89414977-89414996 None:intergenic 30.0%
GAGTTCTGTTATAACATGTA+TGG + chr3.4:89415753-89415772 MS.gene054632:intron 30.0%
TAGTGAGTTTCTTAGAATCA+AGG - chr3.4:89415656-89415675 None:intergenic 30.0%
TATGAAAAAGGGACAAATTG+GGG + chr3.4:89416102-89416121 MS.gene054632:CDS 30.0%
TCAAGATTATCCTTCCTAAT+GGG + chr3.4:89416493-89416512 MS.gene054632:intron 30.0%
TCTTACAGTGATGAATTTAG+AGG - chr3.4:89414978-89414997 None:intergenic 30.0%
TTCAAGATTATCCTTCCTAA+TGG + chr3.4:89416492-89416511 MS.gene054632:intron 30.0%
! ATTAAGGAGGATTTGAAATG+AGG - chr3.4:89415006-89415025 None:intergenic 30.0%
! TAAATTTTCATTCAGTCACG+TGG + chr3.4:89416051-89416070 MS.gene054632:CDS 30.0%
! TCATGAGAAATTTTTCTGCA+CGG + chr3.4:89415286-89415305 MS.gene054632:CDS 30.0%
! TTAAGGAGGATTTGAAATGA+GGG - chr3.4:89415005-89415024 None:intergenic 30.0%
! TTGTAACATCTAGTTTGAAG+TGG + chr3.4:89415938-89415957 MS.gene054632:intron 30.0%
!! TTCTTTTGAAAACTATCGCT+TGG - chr3.4:89416575-89416594 None:intergenic 30.0%
!!! AACCATTGGTTTTCTAGTAT+TGG - chr3.4:89416194-89416213 None:intergenic 30.0%
!!! TGTTTTAACATTGAACCAGA+CGG + chr3.4:89416635-89416654 MS.gene054632:intron 30.0%
AAGCTTCAATCACACACAAA+GGG - chr3.4:89416222-89416241 None:intergenic 35.0%
ACAGAATAAGAGGATTAAGG+AGG - chr3.4:89415019-89415038 None:intergenic 35.0%
AGATCATCTAATGCAGTAGT+AGG + chr3.4:89415502-89415521 MS.gene054632:intron 35.0%
AGTGATGAATTTAGAGGGAT+CGG - chr3.4:89414972-89414991 None:intergenic 35.0%
ATTACTCTGGTTGAAGAACT+TGG + chr3.4:89416755-89416774 MS.gene054632:CDS 35.0%
CACATTGCTGCTATGAAAAA+GGG + chr3.4:89416091-89416110 MS.gene054632:CDS 35.0%
CACCAATACTAGAAAACCAA+TGG + chr3.4:89416189-89416208 MS.gene054632:CDS 35.0%
CAGAACTCTAAGTGTATGTA+TGG - chr3.4:89415741-89415760 None:intergenic 35.0%
CTTTATCCTGGGGTAATTTA+TGG + chr3.4:89415383-89415402 MS.gene054632:CDS 35.0%
GCAAAAGTTACATGCATCTT+TGG + chr3.4:89415596-89415615 MS.gene054632:intron 35.0%
GCTATGAAAAAGGGACAAAT+TGG + chr3.4:89416100-89416119 MS.gene054632:CDS 35.0%
TAAGCTTCAATCACACACAA+AGG - chr3.4:89416223-89416242 None:intergenic 35.0%
TAAGTGTATGTATGGATGAG+TGG - chr3.4:89415733-89415752 None:intergenic 35.0%
TAATGCAGTAGTAGGATAGT+TGG + chr3.4:89415510-89415529 MS.gene054632:intron 35.0%
TGAAATTAGGTCAACGTTGA+AGG + chr3.4:89415063-89415082 MS.gene054632:intron 35.0%
TGAAGGTTTGAAGAATGTGT+TGG + chr3.4:89415080-89415099 MS.gene054632:CDS 35.0%
TGAATTTGCAAAATCACGGT+GGG + chr3.4:89415627-89415646 MS.gene054632:intron 35.0%
TTACTCTGGTTGAAGAACTT+GGG + chr3.4:89416756-89416775 MS.gene054632:CDS 35.0%
TTCTTACGAGAAAGCTAAAG+CGG + chr3.4:89416686-89416705 MS.gene054632:CDS 35.0%
TTGTGTGTGATTGAAGCTTA+TGG + chr3.4:89416223-89416242 MS.gene054632:CDS 35.0%
TTTACAATTGCCCATTAGGA+AGG - chr3.4:89416506-89416525 None:intergenic 35.0%
TTTGAAGAATGTGTTGGAAG+CGG + chr3.4:89415086-89415105 MS.gene054632:CDS 35.0%
! AAATCTAAAGTTGGAACAGC+CGG + chr3.4:89415882-89415901 MS.gene054632:intron 35.0%
! AACTTTTGCTAAAATCACGG+TGG - chr3.4:89415585-89415604 None:intergenic 35.0%
!! AATAGTGTTGCTTTATCCTG+GGG + chr3.4:89415373-89415392 MS.gene054632:CDS 35.0%
!! CAATAGTGTTGCTTTATCCT+GGG + chr3.4:89415372-89415391 MS.gene054632:CDS 35.0%
!! GTTTTAATCTCTCGAATCAC+TGG + chr3.4:89416256-89416275 MS.gene054632:CDS 35.0%
!!! GCATGTTTTAAGACATCGTT+GGG + chr3.4:89416659-89416678 MS.gene054632:CDS 35.0%
!!! TGCATGTTTTAAGACATCGT+TGG + chr3.4:89416658-89416677 MS.gene054632:CDS 35.0%
AAAAGGGACAAATTGGGGAA+AGG + chr3.4:89416107-89416126 MS.gene054632:CDS 40.0%
AACAAGTTTCTCCACTGTCT+TGG - chr3.4:89415121-89415140 None:intergenic 40.0%
AGGAAACGTTCTTGCAAAGA+TGG + chr3.4:89415424-89415443 MS.gene054632:CDS 40.0%
AGTGGTTAGCGACAAAATCA+CGG - chr3.4:89415715-89415734 None:intergenic 40.0%
CACAAAGGGATACTAACCAT+TGG - chr3.4:89416208-89416227 None:intergenic 40.0%
CACGGAGTATGAGAAATCAA+AGG + chr3.4:89415304-89415323 MS.gene054632:CDS 40.0%
CCAGGATAAAGCAACACTAT+TGG - chr3.4:89415374-89415393 None:intergenic 40.0%
GCACATTGCTGCTATGAAAA+AGG + chr3.4:89416090-89416109 MS.gene054632:CDS 40.0%
GGAGAGGAGAGATGAAAAAT+CGG - chr3.4:89414891-89414910 None:intergenic 40.0%
GGTAGATTACCTGGTTACAT+AGG + chr3.4:89416016-89416035 MS.gene054632:CDS 40.0%
GTGAATTTGCAAAATCACGG+TGG + chr3.4:89415626-89415645 MS.gene054632:intron 40.0%
GTGATGAATTTAGAGGGATC+GGG - chr3.4:89414971-89414990 None:intergenic 40.0%
GTGTGATTGAAGCTTATGGA+TGG + chr3.4:89416227-89416246 MS.gene054632:CDS 40.0%
TGATGAATTTAGAGGGATCG+GGG - chr3.4:89414970-89414989 None:intergenic 40.0%
TTACCTGGTTACATAGGCAA+AGG + chr3.4:89416022-89416041 MS.gene054632:CDS 40.0%
TTTCCTTTGCCTATGTAACC+AGG - chr3.4:89416028-89416047 None:intergenic 40.0%
! AATCTAAAGTTGGAACAGCC+GGG + chr3.4:89415883-89415902 MS.gene054632:intron 40.0%
! ATGCATCTTTGTATTGGCAG+CGG + chr3.4:89415538-89415557 MS.gene054632:intron 40.0%
! GTTACCTTTTATCAGTCCAC+CGG + chr3.4:89416282-89416301 MS.gene054632:CDS 40.0%
!! CCAATAGTGTTGCTTTATCC+TGG + chr3.4:89415371-89415390 MS.gene054632:CDS 40.0%
!! CGTTTTAGTGGTAGATTACC+TGG + chr3.4:89416007-89416026 MS.gene054632:CDS 40.0%
!! TGGGGAAAGGTATTTACTGA+CGG + chr3.4:89416120-89416139 MS.gene054632:CDS 40.0%
AAGTCCAGAAGGAAGCTTAC+CGG - chr3.4:89416304-89416323 None:intergenic 45.0%
AGTTACAGAGCTTTCCACCA+AGG - chr3.4:89414769-89414788 None:intergenic 45.0%
ATGAAGAAGGTTGTGGTGAC+CGG + chr3.4:89414731-89414750 MS.gene054632:CDS 45.0%
CCCTCTACCGAAATAGTCTA+CGG + chr3.4:89414857-89414876 MS.gene054632:CDS 45.0%
CCGTAGACTATTTCGGTAGA+GGG - chr3.4:89414860-89414879 None:intergenic 45.0%
CTGGTTGAAGAACTTGGGAT+TGG + chr3.4:89416761-89416780 MS.gene054632:CDS 45.0%
GATGTCGCCGTAGACTATTT+CGG - chr3.4:89414867-89414886 None:intergenic 45.0%
GCTTTGTAACACGAGTCAAG+CGG - chr3.4:89415792-89415811 None:intergenic 45.0%
GTCTTAAAACATGCACCGTC+TGG - chr3.4:89416653-89416672 None:intergenic 45.0%
TAGACTATTTCGGTAGAGGG+AGG - chr3.4:89414857-89414876 None:intergenic 45.0%
TCAGCAATAGCTCCATCAGT+TGG - chr3.4:89415171-89415190 None:intergenic 45.0%
TTTGCTCTTGGACCAACTGA+TGG + chr3.4:89415156-89415175 MS.gene054632:CDS 45.0%
! CAGCTGGTAGAACGTTTTAG+TGG + chr3.4:89415995-89416014 MS.gene054632:intron 45.0%
! TGCATCTTTGTATTGGCAGC+GGG + chr3.4:89415539-89415558 MS.gene054632:intron 45.0%
! TTTCCTGCAGTGACTTTTCC+AGG - chr3.4:89415410-89415429 None:intergenic 45.0%
!! CTTACCGGTGGACTGATAAA+AGG - chr3.4:89416289-89416308 None:intergenic 45.0%
!! GGGGAAAGGTATTTACTGAC+GGG + chr3.4:89416121-89416140 MS.gene054632:CDS 45.0%
!!! ACGTCGTCGTTTTTTGCTCT+TGG + chr3.4:89415144-89415163 MS.gene054632:CDS 45.0%
AAACCCAGAAGCCTGAGAGA+AGG + chr3.4:89416720-89416739 MS.gene054632:CDS 50.0%
AACCCAGAAGCCTGAGAGAA+GGG + chr3.4:89416721-89416740 MS.gene054632:CDS 50.0%
CAGTCACGTGGATGATGTAG+TGG + chr3.4:89416063-89416082 MS.gene054632:CDS 50.0%
CCAGGTCCATAAATTACCCC+AGG - chr3.4:89415392-89415411 None:intergenic 50.0%
CCTGGGGTAATTTATGGACC+TGG + chr3.4:89415389-89415408 MS.gene054632:CDS 50.0%
GAGCTTTCCACCAAGGTAAC+CGG - chr3.4:89414762-89414781 None:intergenic 50.0%
GCCGTAGACTATTTCGGTAG+AGG - chr3.4:89414861-89414880 None:intergenic 50.0%
GGGTCTGACTATGACCTTGA+CGG - chr3.4:89414813-89414832 None:intergenic 50.0%
GGTGAAGCAAACCAAGACAG+TGG + chr3.4:89415107-89415126 MS.gene054632:CDS 50.0%
GGTTAGCGACAAAATCACGG+TGG - chr3.4:89415712-89415731 None:intergenic 50.0%
TCACGTGGATGATGTAGTGG+AGG + chr3.4:89416066-89416085 MS.gene054632:CDS 50.0%
! ACGTGGATGATGTAGTGGAG+GGG + chr3.4:89416068-89416087 MS.gene054632:CDS 50.0%
! CACGTGGATGATGTAGTGGA+GGG + chr3.4:89416067-89416086 MS.gene054632:CDS 50.0%
!! GGCTTGCAGAGGTATTACTC+TGG + chr3.4:89416742-89416761 MS.gene054632:CDS 50.0%
AAGCCCTTCTCTCAGGCTTC+TGG - chr3.4:89416727-89416746 None:intergenic 55.0%
ACCAAGGTAACCGGATGCAC+CGG - chr3.4:89414753-89414772 None:intergenic 55.0%
AGAGCGGCAGTATGATGTCC+CGG - chr3.4:89415904-89415923 None:intergenic 55.0%
AGCCCTTCTCTCAGGCTTCT+GGG - chr3.4:89416726-89416745 None:intergenic 55.0%
AGCTCTGTAACTCCCTCCAC+CGG + chr3.4:89414777-89414796 MS.gene054632:CDS 55.0%
ATTGCAAGCTGCGTCTGAGG+GGG + chr3.4:89415346-89415365 MS.gene054632:CDS 55.0%
CATTGCAAGCTGCGTCTGAG+GGG + chr3.4:89415345-89415364 MS.gene054632:CDS 55.0%
CCTTGACGGAGTAACCTTGC+CGG - chr3.4:89414799-89414818 None:intergenic 55.0%
GCATTGCAAGCTGCGTCTGA+GGG + chr3.4:89415344-89415363 MS.gene054632:CDS 55.0%
GGACCTGGAAAAGTCACTGC+AGG + chr3.4:89415404-89415423 MS.gene054632:CDS 55.0%
GTGGAAGACGACGGAGCAAT+CGG - chr3.4:89414921-89414940 None:intergenic 55.0%
TCCACCGGTAAGCTTCCTTC+TGG + chr3.4:89416297-89416316 MS.gene054632:intron 55.0%
TCCAGAAGGAAGCTTACCGG+TGG - chr3.4:89416301-89416320 None:intergenic 55.0%
TGCATTGCAAGCTGCGTCTG+AGG + chr3.4:89415343-89415362 MS.gene054632:CDS 55.0%
TTCGGTAGAGGGAGGAAGTG+CGG - chr3.4:89414849-89414868 None:intergenic 55.0%
AAGTGCGGAGAGATCGCTGG+TGG - chr3.4:89414834-89414853 None:intergenic 60.0%
ACCGGTGCATCCGGTTACCT+TGG + chr3.4:89414749-89414768 MS.gene054632:CDS 60.0%
AGCAATCGGAGAAGGCGGAG+AGG - chr3.4:89414907-89414926 None:intergenic 60.0%
AGTGCGGAGAGATCGCTGGT+GGG - chr3.4:89414833-89414852 None:intergenic 60.0%
CCGGCAAGGTTACTCCGTCA+AGG + chr3.4:89414796-89414815 MS.gene054632:CDS 60.0%
CCTCTGCAAGCCCTTCTCTC+AGG - chr3.4:89416734-89416753 None:intergenic 60.0%
CCTGAGAGAAGGGCTTGCAG+AGG + chr3.4:89416731-89416750 MS.gene054632:CDS 60.0%
GACGACGGAGCAATCGGAGA+AGG - chr3.4:89414915-89414934 None:intergenic 60.0%
GACGGAGCAATCGGAGAAGG+CGG - chr3.4:89414912-89414931 None:intergenic 60.0%
GAGCCAGGGTTCAACGAGAG+CGG - chr3.4:89414948-89414967 None:intergenic 60.0%
GGAGTAACCTTGCCGGTGGA+GGG - chr3.4:89414792-89414811 None:intergenic 60.0%
GGTGCATCCGGTTACCTTGG+TGG + chr3.4:89414752-89414771 MS.gene054632:CDS 60.0%
GTTGTGGTGACCGGTGCATC+CGG + chr3.4:89414740-89414759 MS.gene054632:CDS 60.0%
TGACGGAGTAACCTTGCCGG+TGG - chr3.4:89414796-89414815 None:intergenic 60.0%
TGTAACTCCCTCCACCGGCA+AGG + chr3.4:89414782-89414801 MS.gene054632:CDS 60.0%
TTAGAGGGATCGGGGAGCCA+GGG - chr3.4:89414962-89414981 None:intergenic 60.0%
TTTAGAGGGATCGGGGAGCC+AGG - chr3.4:89414963-89414982 None:intergenic 60.0%
! AGGAAGTGCGGAGAGATCGC+TGG - chr3.4:89414837-89414856 None:intergenic 60.0%
AGCGGCGAGGTGGAAGACGA+CGG - chr3.4:89414930-89414949 None:intergenic 65.0%
AGGGTTCAACGAGAGCGGCG+AGG - chr3.4:89414943-89414962 None:intergenic 65.0%
CGGAGTAACCTTGCCGGTGG+AGG - chr3.4:89414793-89414812 None:intergenic 65.0%
GTTCAACGAGAGCGGCGAGG+TGG - chr3.4:89414940-89414959 None:intergenic 65.0%
TCGCCGCTCTCGTTGAACCC+TGG + chr3.4:89414942-89414961 MS.gene054632:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 89414731 89416794 89414731 ID=MS.gene054632
chr3.4 mRNA 89414731 89416794 89414731 ID=MS.gene054632.t1;Parent=MS.gene054632
chr3.4 exon 89414731 89414991 89414731 ID=MS.gene054632.t1.exon1;Parent=MS.gene054632.t1
chr3.4 CDS 89414731 89414991 89414731 ID=cds.MS.gene054632.t1;Parent=MS.gene054632.t1
chr3.4 exon 89415072 89415200 89415072 ID=MS.gene054632.t1.exon2;Parent=MS.gene054632.t1
chr3.4 CDS 89415072 89415200 89415072 ID=cds.MS.gene054632.t1;Parent=MS.gene054632.t1
chr3.4 exon 89415281 89415445 89415281 ID=MS.gene054632.t1.exon3;Parent=MS.gene054632.t1
chr3.4 CDS 89415281 89415445 89415281 ID=cds.MS.gene054632.t1;Parent=MS.gene054632.t1
chr3.4 exon 89415998 89416303 89415998 ID=MS.gene054632.t1.exon4;Parent=MS.gene054632.t1
chr3.4 CDS 89415998 89416303 89415998 ID=cds.MS.gene054632.t1;Parent=MS.gene054632.t1
chr3.4 exon 89416654 89416794 89416654 ID=MS.gene054632.t1.exon5;Parent=MS.gene054632.t1
chr3.4 CDS 89416654 89416794 89416654 ID=cds.MS.gene054632.t1;Parent=MS.gene054632.t1
Gene Sequence

>MS.gene054632

ATGAAGAAGGTTGTGGTGACCGGTGCATCCGGTTACCTTGGTGGAAAGCTCTGTAACTCCCTCCACCGGCAAGGTTACTCCGTCAAGGTCATAGTCAGACCCACCAGCGATCTCTCCGCACTTCCTCCCTCTACCGAAATAGTCTACGGCGACATCACCGATTTTTCATCTCTCCTCTCCGCCTTCTCCGATTGCTCCGTCGTCTTCCACCTCGCCGCTCTCGTTGAACCCTGGCTCCCCGATCCCTCTAAATTCATCACTGTAAGATTCTCCCTCATTTCAAATCCTCCTTAATCCTCTTATTCTGTTAATTAATTCAATCAATTTTCGTTTGAAATTAGGTCAACGTTGAAGGTTTGAAGAATGTGTTGGAAGCGGTGAAGCAAACCAAGACAGTGGAGAAACTTGTTTATACGTCGTCGTTTTTTGCTCTTGGACCAACTGATGGAGCTATTGCTGATGAGAATCAAGTACAATACATCAAATCAATACTTCCATTTTTGCTTTTTTAATTTTTTGTTTTTCTTCTAAATCCTAATTCGAAATGTAGGTTCATCATGAGAAATTTTTCTGCACGGAGTATGAGAAATCAAAGGTTGCTACTGATAAAATTGCATTGCAAGCTGCGTCTGAGGGGGTGCCAATAGTGTTGCTTTATCCTGGGGTAATTTATGGACCTGGAAAAGTCACTGCAGGAAACGTTCTTGCAAAGATGGTACTGTTTTATTTCTTCTTGTGTCTTCTGTTTTCTCATATGTTAATTTTGAAATTAGATCATCTAATGCAGTAGTAGGATAGTTGGATTTAATGCATCTTTGTATTGGCAGCGGGATTGTTAGAATCAGAGTGAACCACCGTGATTTTAGCAAAAGTTACATGCATCTTTGGTATCACAGTGAATTTGCAAAATCACGGTGGGTGACCTTGATTCTAAGAAACTCACTACGATATCAAACATGCTTCAACAAAATCAGGGTGCCACCGTGATTTTGTCGCTAACCACTCATCCATACATACACTTAGAGTTCTGTTATAACATGTATGGATACGCGCTGATTCCGCTTGACTCGTGTTACAAAGCTGCTGTATGTTTGAAGCAATAAAGTATAGCTTTGAGTTAACGCACGTTGAAGTTTGTTTTCACTTAATCTAAATCTAAAGTTGGAACAGCCGGGACATCATACTGCCGCTCTAAATTTTGATTTTTTTGTAACATCTAGTTTGAAGTGGAAATGTTGTTTGATATTTATTCTTTTTAATTTTTCAGCTGGTAGAACGTTTTAGTGGTAGATTACCTGGTTACATAGGCAAAGGAAATGATAAATTTTCATTCAGTCACGTGGATGATGTAGTGGAGGGGCACATTGCTGCTATGAAAAAGGGACAAATTGGGGAAAGGTATTTACTGACGGGTGAAAATGCGTCCTTTAATCAAGTTTTTGATATGGCTGCTGTGATCACCAATACTAGAAAACCAATGGTTAGTATCCCTTTGTGTGTGATTGAAGCTTATGGATGGTTGTTAGTTTTAATCTCTCGAATCACTGGAAAGTTACCTTTTATCAGTCCACCGGTAAGCTTCCTTCTGGACTTTGATTTTCAATTTTCATGCATCCAAATCATATACTATCTTATTTTTATCAGAAATTTTTAGCTGACAAATTGATATCTCAGTTAAAAATTTTGTAGACCAAATTTGTTTCAATGTTTAACTGCATAGAAGTGTAAAAATAAATGGCTAAACAAAAAATCCTTTTATGTTTCAAGATTATCCTTCCTAATGGGCAATTGTAAAATAAAATTTCATGGACAAATTCAGTTTTATCTCAATAAATGGGAAACCAAGCGATAGTTTTCAAAAGAAAATAAAGCATATTATCTTCCCTGTTCTCATTTTTTTTTTGTGTTTTAACATTGAACCAGACGGTGCATGTTTTAAGACATCGTTGGGAGTATTCTTACGAGAAAGCTAAAGCGGAGCTAGATTATAAACCCAGAAGCCTGAGAGAAGGGCTTGCAGAGGTATTACTCTGGTTGAAGAACTTGGGATTGGTACAATATTAG

Protein sequence

>MS.gene054632.t1

MKKVVVTGASGYLGGKLCNSLHRQGYSVKVIVRPTSDLSALPPSTEIVYGDITDFSSLLSAFSDCSVVFHLAALVEPWLPDPSKFITVNVEGLKNVLEAVKQTKTVEKLVYTSSFFALGPTDGAIADENQVHHEKFFCTEYEKSKVATDKIALQAASEGVPIVLLYPGVIYGPGKVTAGNVLAKMLVERFSGRLPGYIGKGNDKFSFSHVDDVVEGHIAAMKKGQIGERYLLTGENASFNQVFDMAAVITNTRKPMVSIPLCVIEAYGWLLVLISRITGKLPFISPPTVHVLRHRWEYSYEKAKAELDYKPRSLREGLAEVLLWLKNLGLVQY