AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene012993


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene012993.t1 MTR_3g101500 97.598 333 8 0 1 333 1 333 0.0 668
MS.gene012993.t1 MTR_3g101500 95.318 299 14 0 1 299 1 299 0.0 585
MS.gene012993.t1 MTR_3g101500 96.316 190 7 0 1 190 1 190 2.65e-131 374
MS.gene012993.t1 MTR_3g105440 26.074 349 221 13 5 322 10 352 3.61e-18 85.5
MS.gene012993.t1 MTR_3g105440 26.074 349 221 13 5 322 10 352 4.96e-18 85.1
MS.gene012993.t1 MTR_7g074820 26.316 285 172 8 3 260 7 280 2.04e-16 79.3
MS.gene012993.t1 MTR_7g074850 26.074 326 197 10 3 302 7 314 3.10e-16 78.6
MS.gene012993.t1 MTR_7g074710 27.668 253 150 9 3 230 7 251 3.58e-16 78.6
MS.gene012993.t1 MTR_1g022445 26.523 279 174 10 4 260 8 277 2.79e-15 75.9
MS.gene012993.t1 MTR_1g022440 26.071 280 174 11 4 260 8 277 7.67e-15 74.7
MS.gene012993.t1 MTR_7g074880 24.561 285 174 9 3 260 7 277 3.39e-14 72.8
MS.gene012993.t1 MTR_4g081440 24.014 279 178 10 3 250 19 294 5.12e-14 72.4
MS.gene012993.t1 MTR_4g081440 24.014 279 178 10 3 250 23 298 5.18e-14 72.4
MS.gene012993.t1 MTR_7g117190 26.897 290 147 15 3 242 6 280 1.04e-13 71.2
MS.gene012993.t1 MTR_7g117190 26.897 290 147 15 3 242 6 280 1.06e-13 71.2
MS.gene012993.t1 MTR_4g077130 25.806 279 178 7 2 260 7 276 1.61e-13 70.9
MS.gene012993.t1 MTR_4g077100 25.180 278 181 9 2 260 9 278 2.51e-13 69.7
MS.gene012993.t1 MTR_4g077100 25.180 278 181 9 2 260 9 278 5.25e-13 69.3
MS.gene012993.t1 MTR_4g009040 26.705 352 199 14 2 332 11 324 1.00e-12 68.6
MS.gene012993.t1 MTR_2g028620 29.020 255 144 13 4 231 10 254 1.36e-12 67.8
MS.gene012993.t1 MTR_2g028620 29.020 255 144 13 4 231 10 254 1.37e-12 68.2
MS.gene012993.t1 MTR_4g009040 26.404 356 199 14 2 332 11 328 2.58e-12 67.0
MS.gene012993.t1 MTR_8g062110 26.295 251 159 8 2 232 7 251 4.81e-12 65.9
MS.gene012993.t1 MTR_2g073240 23.868 243 170 6 2 230 19 260 4.82e-12 67.4
MS.gene012993.t1 MTR_0034s0060 23.457 243 171 6 2 230 137 378 5.23e-12 67.4
MS.gene012993.t1 MTR_8g062110 26.295 251 159 8 2 232 7 251 5.52e-12 65.9
MS.gene012993.t1 MTR_5g072620 27.200 250 157 8 2 231 3 247 5.98e-12 65.9
MS.gene012993.t1 MTR_8g062110 26.295 251 159 8 2 232 7 251 9.31e-12 65.5
MS.gene012993.t1 MTR_8g062110 26.295 251 159 8 2 232 16 260 1.11e-11 65.5
MS.gene012993.t1 MTR_2g013250 25.806 279 163 13 3 242 6 279 2.85e-11 64.3
MS.gene012993.t1 MTR_4g009690 27.635 351 196 13 2 332 11 323 3.42e-11 63.9
MS.gene012993.t1 MTR_4g009690 27.887 355 191 14 2 332 11 324 6.15e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene012993.t1 AT4G33360 70.997 331 96 0 3 333 14 344 0.0 513
MS.gene012993.t1 AT4G33360 71.562 320 91 0 3 322 2 321 8.95e-179 498
MS.gene012993.t1 AT4G33360 71.930 285 80 0 3 287 14 298 3.04e-160 450
MS.gene012993.t1 AT1G09490 31.818 264 155 8 2 245 6 264 1.75e-23 99.0
MS.gene012993.t1 AT1G09480 29.924 264 160 8 2 245 6 264 4.27e-22 95.1
MS.gene012993.t1 AT1G09480 29.924 264 160 8 2 245 53 311 7.99e-22 95.1
MS.gene012993.t1 AT1G09510 30.798 263 153 10 2 242 6 261 1.71e-20 90.9
MS.gene012993.t1 AT1G61720 27.138 269 171 6 2 245 11 279 1.31e-17 82.8
MS.gene012993.t1 AT1G09490 30.918 207 127 6 50 245 32 233 5.99e-17 80.5
MS.gene012993.t1 AT2G45400 26.389 288 170 10 4 260 40 316 4.19e-15 75.5
MS.gene012993.t1 AT2G45400 26.102 295 176 10 4 267 40 323 5.76e-15 75.5
MS.gene012993.t1 AT1G66800 27.519 258 164 8 2 242 6 257 1.02e-14 74.3
MS.gene012993.t1 AT5G58490 30.085 236 138 8 4 218 9 238 1.48e-14 73.9
MS.gene012993.t1 AT1G09500 28.516 256 153 9 2 234 6 254 2.39e-14 72.8
MS.gene012993.t1 AT5G19440 26.836 354 202 14 2 333 8 326 3.39e-14 72.8
MS.gene012993.t1 AT1G09500 28.516 256 153 9 2 234 6 254 4.22e-14 72.4
MS.gene012993.t1 AT1G53500 25.514 243 166 6 2 230 9 250 1.31e-13 72.0
MS.gene012993.t1 AT2G02400 27.519 258 164 10 2 241 4 256 2.16e-13 70.5
MS.gene012993.t1 AT2G23910 25.899 278 170 10 4 260 10 272 3.79e-13 68.9
MS.gene012993.t1 AT2G23910 25.899 278 170 10 4 260 10 272 4.06e-13 68.9
MS.gene012993.t1 AT1G51410 28.195 266 162 9 2 245 7 265 5.90e-13 68.9
MS.gene012993.t1 AT2G23910 26.619 278 168 11 4 260 10 272 6.25e-13 68.9
MS.gene012993.t1 AT2G33590 27.165 254 156 10 3 234 8 254 5.09e-12 66.2
MS.gene012993.t1 AT5G14700 29.082 196 112 8 4 173 55 249 7.03e-12 65.5
MS.gene012993.t1 AT2G45400 29.592 196 112 7 4 173 40 235 1.05e-11 64.7
MS.gene012993.t1 AT5G14700 29.082 196 112 8 4 173 55 249 1.48e-11 65.1
MS.gene012993.t1 AT1G80820 29.435 248 150 10 2 232 6 245 4.78e-11 62.8

Find 92 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTATCCTGGGGTAATTTA+TGG 0.110220 3.2:+84532481 MS.gene012993:CDS
AAGCCCTTCTCTCAGGCTTC+TGG 0.219625 3.2:-84533800 None:intergenic
GCACATTGCTGCTATGAAAA+AGG 0.255767 3.2:+84533166 MS.gene012993:CDS
TTGTGTGTGATTGAAGCTTA+TGG 0.293479 3.2:+84533299 MS.gene012993:CDS
CCAATAGTGTTGCTTTATCC+TGG 0.298721 3.2:+84532469 MS.gene012993:CDS
CTTACCGGTGGACTGATAAA+AGG 0.344492 3.2:-84533362 None:intergenic
AGCCCTTCTCTCAGGCTTCT+GGG 0.368707 3.2:-84533799 None:intergenic
ATTACTCTGGTTGAAGAACT+TGG 0.390223 3.2:+84533831 MS.gene012993:CDS
TTTAGAGGGATCGGGGAGCC+AGG 0.391159 3.2:-84532058 None:intergenic
TTTGCTCTTGGACCAACTGA+TGG 0.422894 3.2:+84532254 MS.gene012993:CDS
CAATAGTGTTGCTTTATCCT+GGG 0.434363 3.2:+84532470 MS.gene012993:CDS
TGAAATTAGGTCAACGTTGA+AGG 0.442193 3.2:+84532161 MS.gene012993:intron
GAGCTTTCCACCAAGGTAAC+CGG 0.454097 3.2:-84531857 None:intergenic
AACAAGTTTCTCCACTGTCT+TGG 0.460174 3.2:-84532216 None:intergenic
CCTTGACGGAGTAACCTTGC+CGG 0.465146 3.2:-84531894 None:intergenic
CCAGGATAAAGCAACACTAT+TGG 0.469005 3.2:-84532469 None:intergenic
GTGGAAGACGACGGAGCAAT+CGG 0.472753 3.2:-84532016 None:intergenic
GTTGTGGTGACCGGTGCATC+CGG 0.479262 3.2:+84531838 MS.gene012993:CDS
CCTGGGGTAATTTATGGACC+TGG 0.479761 3.2:+84532487 MS.gene012993:CDS
GTGATGAATTTAGAGGGATC+GGG 0.481282 3.2:-84532066 None:intergenic
TCCTACAGTGATGAATTTAG+AGG 0.485890 3.2:-84532073 None:intergenic
ACCGGTGCATCCGGTTACCT+TGG 0.487879 3.2:+84531847 MS.gene012993:CDS
TGCATTGCAAGCTGCGTCTG+AGG 0.495160 3.2:+84532441 MS.gene012993:CDS
CGGAGTAACCTTGCCGGTGG+AGG 0.498534 3.2:-84531888 None:intergenic
CCTCTGCAAGCCCTTCTCTC+AGG 0.502858 3.2:-84533807 None:intergenic
AGTGATGAATTTAGAGGGAT+CGG 0.503641 3.2:-84532067 None:intergenic
GACGACGGAGCAATCGGAGA+AGG 0.508216 3.2:-84532010 None:intergenic
CTGGTTGAAGAACTTGGGAT+TGG 0.511734 3.2:+84533837 MS.gene012993:CDS
GCATTGCAAGCTGCGTCTGA+GGG 0.514048 3.2:+84532442 MS.gene012993:CDS
TTACTCTGGTTGAAGAACTT+GGG 0.518823 3.2:+84533832 MS.gene012993:CDS
AGGAAACGTTCTTGCAAAGA+TGG 0.521510 3.2:+84532522 MS.gene012993:CDS
TCGCCGCTCTCGTTGAACCC+TGG 0.524911 3.2:+84532040 MS.gene012993:CDS
AACCCAGAAGCCTGAGAGAA+GGG 0.528826 3.2:+84533797 MS.gene012993:CDS
CCAGGTCCATAAATTACCCC+AGG 0.529788 3.2:-84532487 None:intergenic
GGTGCATCCGGTTACCTTGG+TGG 0.530784 3.2:+84531850 MS.gene012993:CDS
TTTCCTTTGCCTATGTAACC+AGG 0.531525 3.2:-84533101 None:intergenic
TTAGAGGGATCGGGGAGCCA+GGG 0.553029 3.2:-84532057 None:intergenic
AAGCTTCAATCACACACAAA+GGG 0.553221 3.2:-84533295 None:intergenic
GGAGTAACCTTGCCGGTGGA+GGG 0.554584 3.2:-84531887 None:intergenic
GGTAGATTACCTGGTTACAT+AGG 0.554685 3.2:+84533092 MS.gene012993:CDS
GCCGTAGACTATTTCGGTAG+AGG 0.554834 3.2:-84531956 None:intergenic
ATGAAGAAGGTTGTGGTGAC+CGG 0.557804 3.2:+84531829 MS.gene012993:CDS
CCCTCTACCGAAATAGTCTA+CGG 0.558374 3.2:+84531955 MS.gene012993:CDS
TAGGGTGAAAGGAATGAAGA+AGG 0.560617 3.2:+84531816 None:intergenic
AGGAAGTGCGGAGAGATCGC+TGG 0.560868 3.2:-84531932 None:intergenic
GATGTCGCCGTAGACTATTT+CGG 0.563374 3.2:-84531962 None:intergenic
ACCAAGGTAACCGGATGCAC+CGG 0.568156 3.2:-84531848 None:intergenic
CGGGGAAAGGTATTTACTGA+CGG 0.568474 3.2:+84533196 MS.gene012993:CDS
GGGTCTGACTATGACCTTGA+CGG 0.570927 3.2:-84531908 None:intergenic
GTGTGATTGAAGCTTATGGA+TGG 0.572510 3.2:+84533303 MS.gene012993:CDS
GGACCTGGAAAAGTCACTGC+AGG 0.573017 3.2:+84532502 MS.gene012993:CDS
GACGGAGCAATCGGAGAAGG+CGG 0.574794 3.2:-84532007 None:intergenic
TGAAGGTTTGAAGAATGTGT+TGG 0.575694 3.2:+84532178 MS.gene012993:CDS
GGGGAAAGGTATTTACTGAC+GGG 0.577158 3.2:+84533197 MS.gene012993:CDS
CCGTAGACTATTTCGGTAGA+GGG 0.579428 3.2:-84531955 None:intergenic
AAACCCAGAAGCCTGAGAGA+AGG 0.580491 3.2:+84533796 MS.gene012993:CDS
CACAAAGGGATACTAACCAT+TGG 0.587521 3.2:-84533281 None:intergenic
CACCAATACTAGAAAACCAA+TGG 0.590719 3.2:+84533265 MS.gene012993:CDS
ATTGCAAGCTGCGTCTGAGG+GGG 0.592571 3.2:+84532444 MS.gene012993:CDS
TTCTTACGAGAAAGCTAAAG+CGG 0.594506 3.2:+84533762 MS.gene012993:CDS
AAGTGCGGAGAGATCGCTGG+TGG 0.596182 3.2:-84531929 None:intergenic
CACGTGGATGATGTAGTGGA+GGG 0.597809 3.2:+84533143 MS.gene012993:CDS
AAAAGGGACAAATCGGGGAA+AGG 0.597983 3.2:+84533183 MS.gene012993:CDS
TCACGTGGATGATGTAGTGG+AGG 0.604726 3.2:+84533142 MS.gene012993:CDS
TTACCTGGTTACATAGGCAA+AGG 0.607299 3.2:+84533098 MS.gene012993:CDS
CAGTCACGTGGATGATGTAG+TGG 0.608268 3.2:+84533139 MS.gene012993:CDS
TTCGGTAGAGGGAGGAAGTG+CGG 0.608399 3.2:-84531944 None:intergenic
CCTACAGTGATGAATTTAGA+GGG 0.610435 3.2:-84532072 None:intergenic
TCAGCAATAGCTCCATCAGT+TGG 0.610570 3.2:-84532266 None:intergenic
GGCTTGCAGAGGTATTACTC+TGG 0.610945 3.2:+84533818 MS.gene012993:CDS
AGCAATCGGAGAAGGCGGAG+AGG 0.612030 3.2:-84532002 None:intergenic
AATAGTGTTGCTTTATCCTG+GGG 0.612704 3.2:+84532471 MS.gene012993:CDS
GAAAGGAATGAAGAAGGTTG+TGG 0.615924 3.2:+84531822 None:intergenic
TTTGAAGAATGTGTTGGAAG+CGG 0.617316 3.2:+84532184 MS.gene012993:CDS
TGTAACTCCCTCCACCGGCA+AGG 0.622930 3.2:+84531880 MS.gene012993:CDS
TAAGCTTCAATCACACACAA+AGG 0.625443 3.2:-84533296 None:intergenic
CCTGAGAGAAGGGCTTGCAG+AGG 0.625831 3.2:+84533807 MS.gene012993:CDS
TGATGAATTTAGAGGGATCG+GGG 0.632493 3.2:-84532065 None:intergenic
GAGCCAGGGTTCAACGAGAG+CGG 0.635737 3.2:-84532043 None:intergenic
AGCGGCGAGGTGGAAGACGA+CGG 0.637580 3.2:-84532025 None:intergenic
GTTCAACGAGAGCGGCGAGG+TGG 0.638189 3.2:-84532035 None:intergenic
AGCTCTGTAACTCCCTCCAC+CGG 0.638268 3.2:+84531875 MS.gene012993:CDS
CACGGAGTATGAGAAATCAA+AGG 0.645350 3.2:+84532402 MS.gene012993:CDS
AGTTACAGAGCTTTCCACCA+AGG 0.655017 3.2:-84531864 None:intergenic
TGACGGAGTAACCTTGCCGG+TGG 0.655172 3.2:-84531891 None:intergenic
CCGGCAAGGTTACTCCGTCA+AGG 0.659151 3.2:+84531894 MS.gene012993:CDS
AGTGCGGAGAGATCGCTGGT+GGG 0.664599 3.2:-84531928 None:intergenic
CATTGCAAGCTGCGTCTGAG+GGG 0.665679 3.2:+84532443 MS.gene012993:CDS
TAGACTATTTCGGTAGAGGG+AGG 0.666208 3.2:-84531952 None:intergenic
AGGGTTCAACGAGAGCGGCG+AGG 0.708116 3.2:-84532038 None:intergenic
ACGTGGATGATGTAGTGGAG+GGG 0.712851 3.2:+84533144 MS.gene012993:CDS
GGTGAAGCAAACCAAGACAG+TGG 0.722877 3.2:+84532205 MS.gene012993:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTAAAAAAGCAAAAA+TGG - chr3.2:84532326-84532345 None:intergenic 10.0%
!! AATTGTAAAATAAAATTTCA+TGG + chr3.2:84533593-84533612 MS.gene012993:intron 10.0%
!! AAAAAAATCAAAATTTAGAG+CGG - chr3.2:84532996-84533015 None:intergenic 15.0%
!! AAATAAGATAGTATATGATT+TGG - chr3.2:84533424-84533443 None:intergenic 15.0%
!! ACAAAAAAAAAATGAGAACA+GGG - chr3.2:84533692-84533711 None:intergenic 20.0%
!! CATATCAAAAACTTGATTAA+AGG - chr3.2:84533234-84533253 None:intergenic 20.0%
!! GAATTAATTAACAGAATAAG+AGG - chr3.2:84532127-84532146 None:intergenic 20.0%
!! GTTAAACATTGAAACAAATT+TGG - chr3.2:84533500-84533519 None:intergenic 20.0%
!!! ACTTAATCTAAATCTAAAGT+TGG + chr3.2:84532949-84532968 MS.gene012993:intron 20.0%
!!! ATCAATTTTCGTTTGAAATT+AGG + chr3.2:84532148-84532167 MS.gene012993:intron 20.0%
!!! ATTCTTTTTAATTTTTCAGC+TGG + chr3.2:84533055-84533074 MS.gene012993:intron 20.0%
!!! CATAGAAGTGTAAAAATAAA+TGG + chr3.2:84533522-84533541 MS.gene012993:intron 20.0%
!!! CTTTAATCAAGTTTTTGATA+TGG + chr3.2:84533232-84533251 MS.gene012993:CDS 20.0%
!!! TCAGTTTTATCTCAATAAAT+GGG + chr3.2:84533622-84533641 MS.gene012993:intron 20.0%
!!! TTCAGTTTTATCTCAATAAA+TGG + chr3.2:84533621-84533640 MS.gene012993:intron 20.0%
! CACAAAAAAAAAATGAGAAC+AGG - chr3.2:84533693-84533712 None:intergenic 25.0%
! GATTTAATGCATCTTTGTAT+TGG + chr3.2:84532608-84532627 MS.gene012993:intron 25.0%
! GGATAATCTTGAAACATAAA+AGG - chr3.2:84533561-84533580 None:intergenic 25.0%
! TAAATCCTAATTCCAAATGT+AGG + chr3.2:84532357-84532376 MS.gene012993:intron 25.0%
! TTAACAGAATAAGAGGATTA+AGG - chr3.2:84532120-84532139 None:intergenic 25.0%
!! TGTAACTTTTGCTAAAATCA+CGG - chr3.2:84532664-84532683 None:intergenic 25.0%
!!! TTATTTTACAATTGCCCATT+AGG - chr3.2:84533586-84533605 None:intergenic 25.0%
AAACATGCTTCAACAAAATC+AGG + chr3.2:84532759-84532778 MS.gene012993:intron 30.0%
AACATGCTTCAACAAAATCA+GGG + chr3.2:84532760-84532779 MS.gene012993:intron 30.0%
ACAGTGAATTTGCAAAATCA+CGG + chr3.2:84532699-84532718 MS.gene012993:intron 30.0%
ATTGAAAATCAAAGTCCAGA+AGG - chr3.2:84533391-84533410 None:intergenic 30.0%
GAGTTCTGTTATAACATGTA+TGG + chr3.2:84532829-84532848 MS.gene012993:intron 30.0%
TAGTGAGTTTCTTAGAATCA+AGG - chr3.2:84532732-84532751 None:intergenic 30.0%
TCAAGATTATCCTTCCTAAT+GGG + chr3.2:84533569-84533588 MS.gene012993:intron 30.0%
TTCAAGATTATCCTTCCTAA+TGG + chr3.2:84533568-84533587 MS.gene012993:intron 30.0%
! ATGAACCTACATTTGGAATT+AGG - chr3.2:84532365-84532384 None:intergenic 30.0%
! ATTAAGGAGGATTTGAAATG+AGG - chr3.2:84532104-84532123 None:intergenic 30.0%
! TAAATTTTCATTCAGTCACG+TGG + chr3.2:84533127-84533146 MS.gene012993:CDS 30.0%
! TCATGAGAAATTTTTCTGCA+CGG + chr3.2:84532384-84532403 MS.gene012993:CDS 30.0%
! TTAAGGAGGATTTGAAATGA+GGG - chr3.2:84532103-84532122 None:intergenic 30.0%
! TTGTAACATCTAGTTTGAAG+TGG + chr3.2:84533014-84533033 MS.gene012993:intron 30.0%
!! TTCTTTTGAAAACTATCGCT+TGG - chr3.2:84533651-84533670 None:intergenic 30.0%
!!! AACCATTGGTTTTCTAGTAT+TGG - chr3.2:84533270-84533289 None:intergenic 30.0%
!!! TGTTTTAACATTGAACCAGA+CGG + chr3.2:84533711-84533730 MS.gene012993:intron 30.0%
AAGCTTCAATCACACACAAA+GGG - chr3.2:84533298-84533317 None:intergenic 35.0%
ACAGAATAAGAGGATTAAGG+AGG - chr3.2:84532117-84532136 None:intergenic 35.0%
AGTGATGAATTTAGAGGGAT+CGG - chr3.2:84532070-84532089 None:intergenic 35.0%
ATTACTCTGGTTGAAGAACT+TGG + chr3.2:84533831-84533850 MS.gene012993:CDS 35.0%
CACATTGCTGCTATGAAAAA+GGG + chr3.2:84533167-84533186 MS.gene012993:CDS 35.0%
CACCAATACTAGAAAACCAA+TGG + chr3.2:84533265-84533284 MS.gene012993:CDS 35.0%
CAGAACTCTAAGTGTATGTA+TGG - chr3.2:84532817-84532836 None:intergenic 35.0%
CCTACAGTGATGAATTTAGA+GGG - chr3.2:84532075-84532094 None:intergenic 35.0%
CTATGAAAAAGGGACAAATC+GGG + chr3.2:84533177-84533196 MS.gene012993:CDS 35.0%
CTCATATCTAATGCAGTAGT+AGG + chr3.2:84532578-84532597 MS.gene012993:intron 35.0%
CTTTATCCTGGGGTAATTTA+TGG + chr3.2:84532481-84532500 MS.gene012993:CDS 35.0%
GCAAAAGTTACATGCATCTT+TGG + chr3.2:84532672-84532691 MS.gene012993:intron 35.0%
GCTATGAAAAAGGGACAAAT+CGG + chr3.2:84533176-84533195 MS.gene012993:CDS 35.0%
TAAGCTTCAATCACACACAA+AGG - chr3.2:84533299-84533318 None:intergenic 35.0%
TAAGTGTATGTATGGATGAG+TGG - chr3.2:84532809-84532828 None:intergenic 35.0%
TAATGCAGTAGTAGGATAGT+TGG + chr3.2:84532586-84532605 MS.gene012993:intron 35.0%
TATGAAAAAGGGACAAATCG+GGG + chr3.2:84533178-84533197 MS.gene012993:CDS 35.0%
TCCTACAGTGATGAATTTAG+AGG - chr3.2:84532076-84532095 None:intergenic 35.0%
TCTCATGATGAACCTACATT+TGG - chr3.2:84532372-84532391 None:intergenic 35.0%
TGAAATTAGGTCAACGTTGA+AGG + chr3.2:84532161-84532180 MS.gene012993:intron 35.0%
TGAAGGTTTGAAGAATGTGT+TGG + chr3.2:84532178-84532197 MS.gene012993:CDS 35.0%
TGAATTTGCAAAATCACGGT+GGG + chr3.2:84532703-84532722 MS.gene012993:intron 35.0%
TTACTCTGGTTGAAGAACTT+GGG + chr3.2:84533832-84533851 MS.gene012993:CDS 35.0%
TTCTTACGAGAAAGCTAAAG+CGG + chr3.2:84533762-84533781 MS.gene012993:CDS 35.0%
TTGTGTGTGATTGAAGCTTA+TGG + chr3.2:84533299-84533318 MS.gene012993:CDS 35.0%
TTTACAATTGCCCATTAGGA+AGG - chr3.2:84533582-84533601 None:intergenic 35.0%
TTTGAAGAATGTGTTGGAAG+CGG + chr3.2:84532184-84532203 MS.gene012993:CDS 35.0%
! AAATCTAAAGTTGGAACAGC+CGG + chr3.2:84532958-84532977 MS.gene012993:intron 35.0%
! AACTTTTGCTAAAATCACGG+TGG - chr3.2:84532661-84532680 None:intergenic 35.0%
!! AATAGTGTTGCTTTATCCTG+GGG + chr3.2:84532471-84532490 MS.gene012993:CDS 35.0%
!! CAATAGTGTTGCTTTATCCT+GGG + chr3.2:84532470-84532489 MS.gene012993:CDS 35.0%
!! GTTTTAATCTCTCGAATCAC+TGG + chr3.2:84533332-84533351 MS.gene012993:CDS 35.0%
!!! GCATGTTTTAAGACATCGTT+GGG + chr3.2:84533735-84533754 MS.gene012993:CDS 35.0%
!!! TGCATGTTTTAAGACATCGT+TGG + chr3.2:84533734-84533753 MS.gene012993:CDS 35.0%
AACAAGTTTCTCCACTGTCT+TGG - chr3.2:84532219-84532238 None:intergenic 40.0%
AGGAAACGTTCTTGCAAAGA+TGG + chr3.2:84532522-84532541 MS.gene012993:CDS 40.0%
AGTGGTTAGCGACAAAATCA+CGG - chr3.2:84532791-84532810 None:intergenic 40.0%
CACAAAGGGATACTAACCAT+TGG - chr3.2:84533284-84533303 None:intergenic 40.0%
CACGGAGTATGAGAAATCAA+AGG + chr3.2:84532402-84532421 MS.gene012993:CDS 40.0%
CCAGGATAAAGCAACACTAT+TGG - chr3.2:84532472-84532491 None:intergenic 40.0%
CCCTCTAAATTCATCACTGT+AGG + chr3.2:84532072-84532091 MS.gene012993:intron 40.0%
GCACATTGCTGCTATGAAAA+AGG + chr3.2:84533166-84533185 MS.gene012993:CDS 40.0%
GGAGAGGAGAGATGAAAAAT+CGG - chr3.2:84531989-84532008 None:intergenic 40.0%
GGTAGATTACCTGGTTACAT+AGG + chr3.2:84533092-84533111 MS.gene012993:CDS 40.0%
GTGAATTTGCAAAATCACGG+TGG + chr3.2:84532702-84532721 MS.gene012993:intron 40.0%
GTGATGAATTTAGAGGGATC+GGG - chr3.2:84532069-84532088 None:intergenic 40.0%
GTGTGATTGAAGCTTATGGA+TGG + chr3.2:84533303-84533322 MS.gene012993:CDS 40.0%
TGATGAATTTAGAGGGATCG+GGG - chr3.2:84532068-84532087 None:intergenic 40.0%
TTACCTGGTTACATAGGCAA+AGG + chr3.2:84533098-84533117 MS.gene012993:CDS 40.0%
TTTCCTTTGCCTATGTAACC+AGG - chr3.2:84533104-84533123 None:intergenic 40.0%
! AATCTAAAGTTGGAACAGCC+GGG + chr3.2:84532959-84532978 MS.gene012993:intron 40.0%
! ATGCATCTTTGTATTGGCAG+CGG + chr3.2:84532614-84532633 MS.gene012993:intron 40.0%
! GTTACCTTTTATCAGTCCAC+CGG + chr3.2:84533358-84533377 MS.gene012993:CDS 40.0%
!! CCAATAGTGTTGCTTTATCC+TGG + chr3.2:84532469-84532488 MS.gene012993:CDS 40.0%
!! CGTTTTAGTGGTAGATTACC+TGG + chr3.2:84533083-84533102 MS.gene012993:CDS 40.0%
AAAAGGGACAAATCGGGGAA+AGG + chr3.2:84533183-84533202 MS.gene012993:CDS 45.0%
AAGTCCAGAAGGAAGCTTAC+CGG - chr3.2:84533380-84533399 None:intergenic 45.0%
AGTTACAGAGCTTTCCACCA+AGG - chr3.2:84531867-84531886 None:intergenic 45.0%
ATGAAGAAGGTTGTGGTGAC+CGG + chr3.2:84531829-84531848 MS.gene012993:CDS 45.0%
CCCTCTACCGAAATAGTCTA+CGG + chr3.2:84531955-84531974 MS.gene012993:CDS 45.0%
CCGTAGACTATTTCGGTAGA+GGG - chr3.2:84531958-84531977 None:intergenic 45.0%
CTGGTTGAAGAACTTGGGAT+TGG + chr3.2:84533837-84533856 MS.gene012993:CDS 45.0%
GATGTCGCCGTAGACTATTT+CGG - chr3.2:84531965-84531984 None:intergenic 45.0%
GCTTTGTAACACGAGTCAAG+TGG - chr3.2:84532868-84532887 None:intergenic 45.0%
GTCTTAAAACATGCACCGTC+TGG - chr3.2:84533729-84533748 None:intergenic 45.0%
TAGACTATTTCGGTAGAGGG+AGG - chr3.2:84531955-84531974 None:intergenic 45.0%
TCAGCAATAGCTCCATCAGT+TGG - chr3.2:84532269-84532288 None:intergenic 45.0%
TTTGCTCTTGGACCAACTGA+TGG + chr3.2:84532254-84532273 MS.gene012993:CDS 45.0%
! CAGCTGGTAGAACGTTTTAG+TGG + chr3.2:84533071-84533090 MS.gene012993:intron 45.0%
! TGCATCTTTGTATTGGCAGC+GGG + chr3.2:84532615-84532634 MS.gene012993:intron 45.0%
! TTTCCTGCAGTGACTTTTCC+AGG - chr3.2:84532508-84532527 None:intergenic 45.0%
!! CGGGGAAAGGTATTTACTGA+CGG + chr3.2:84533196-84533215 MS.gene012993:CDS 45.0%
!! CTTACCGGTGGACTGATAAA+AGG - chr3.2:84533365-84533384 None:intergenic 45.0%
!! GGGGAAAGGTATTTACTGAC+GGG + chr3.2:84533197-84533216 MS.gene012993:CDS 45.0%
!!! ACGTCGTCGTTTTTTGCTCT+TGG + chr3.2:84532242-84532261 MS.gene012993:CDS 45.0%
AAACCCAGAAGCCTGAGAGA+AGG + chr3.2:84533796-84533815 MS.gene012993:CDS 50.0%
AACCCAGAAGCCTGAGAGAA+GGG + chr3.2:84533797-84533816 MS.gene012993:CDS 50.0%
CAGTCACGTGGATGATGTAG+TGG + chr3.2:84533139-84533158 MS.gene012993:CDS 50.0%
CCAGGTCCATAAATTACCCC+AGG - chr3.2:84532490-84532509 None:intergenic 50.0%
CCTGGGGTAATTTATGGACC+TGG + chr3.2:84532487-84532506 MS.gene012993:CDS 50.0%
GAGCTTTCCACCAAGGTAAC+CGG - chr3.2:84531860-84531879 None:intergenic 50.0%
GCCGTAGACTATTTCGGTAG+AGG - chr3.2:84531959-84531978 None:intergenic 50.0%
GGGTCTGACTATGACCTTGA+CGG - chr3.2:84531911-84531930 None:intergenic 50.0%
GGTGAAGCAAACCAAGACAG+TGG + chr3.2:84532205-84532224 MS.gene012993:CDS 50.0%
GGTTAGCGACAAAATCACGG+TGG - chr3.2:84532788-84532807 None:intergenic 50.0%
TCACGTGGATGATGTAGTGG+AGG + chr3.2:84533142-84533161 MS.gene012993:CDS 50.0%
! ACGTGGATGATGTAGTGGAG+GGG + chr3.2:84533144-84533163 MS.gene012993:CDS 50.0%
! CACGTGGATGATGTAGTGGA+GGG + chr3.2:84533143-84533162 MS.gene012993:CDS 50.0%
!! GGCTTGCAGAGGTATTACTC+TGG + chr3.2:84533818-84533837 MS.gene012993:CDS 50.0%
AAGCCCTTCTCTCAGGCTTC+TGG - chr3.2:84533803-84533822 None:intergenic 55.0%
ACCAAGGTAACCGGATGCAC+CGG - chr3.2:84531851-84531870 None:intergenic 55.0%
AGAGCGGCAGTATGATGTCC+CGG - chr3.2:84532980-84532999 None:intergenic 55.0%
AGCCCTTCTCTCAGGCTTCT+GGG - chr3.2:84533802-84533821 None:intergenic 55.0%
AGCTCTGTAACTCCCTCCAC+CGG + chr3.2:84531875-84531894 MS.gene012993:CDS 55.0%
ATTGCAAGCTGCGTCTGAGG+GGG + chr3.2:84532444-84532463 MS.gene012993:CDS 55.0%
CATTGCAAGCTGCGTCTGAG+GGG + chr3.2:84532443-84532462 MS.gene012993:CDS 55.0%
CCTTGACGGAGTAACCTTGC+CGG - chr3.2:84531897-84531916 None:intergenic 55.0%
GCATTGCAAGCTGCGTCTGA+GGG + chr3.2:84532442-84532461 MS.gene012993:CDS 55.0%
GGACCTGGAAAAGTCACTGC+AGG + chr3.2:84532502-84532521 MS.gene012993:CDS 55.0%
GTGGAAGACGACGGAGCAAT+CGG - chr3.2:84532019-84532038 None:intergenic 55.0%
TCCACCGGTAAGCTTCCTTC+TGG + chr3.2:84533373-84533392 MS.gene012993:intron 55.0%
TCCAGAAGGAAGCTTACCGG+TGG - chr3.2:84533377-84533396 None:intergenic 55.0%
TGCATTGCAAGCTGCGTCTG+AGG + chr3.2:84532441-84532460 MS.gene012993:CDS 55.0%
TTCGGTAGAGGGAGGAAGTG+CGG - chr3.2:84531947-84531966 None:intergenic 55.0%
AAGTGCGGAGAGATCGCTGG+TGG - chr3.2:84531932-84531951 None:intergenic 60.0%
ACCGGTGCATCCGGTTACCT+TGG + chr3.2:84531847-84531866 MS.gene012993:CDS 60.0%
AGCAATCGGAGAAGGCGGAG+AGG - chr3.2:84532005-84532024 None:intergenic 60.0%
AGTGCGGAGAGATCGCTGGT+GGG - chr3.2:84531931-84531950 None:intergenic 60.0%
CCGGCAAGGTTACTCCGTCA+AGG + chr3.2:84531894-84531913 MS.gene012993:CDS 60.0%
CCTCTGCAAGCCCTTCTCTC+AGG - chr3.2:84533810-84533829 None:intergenic 60.0%
CCTGAGAGAAGGGCTTGCAG+AGG + chr3.2:84533807-84533826 MS.gene012993:CDS 60.0%
GACGACGGAGCAATCGGAGA+AGG - chr3.2:84532013-84532032 None:intergenic 60.0%
GACGGAGCAATCGGAGAAGG+CGG - chr3.2:84532010-84532029 None:intergenic 60.0%
GAGCCAGGGTTCAACGAGAG+CGG - chr3.2:84532046-84532065 None:intergenic 60.0%
GGAGTAACCTTGCCGGTGGA+GGG - chr3.2:84531890-84531909 None:intergenic 60.0%
GGTGCATCCGGTTACCTTGG+TGG + chr3.2:84531850-84531869 MS.gene012993:CDS 60.0%
GTTGTGGTGACCGGTGCATC+CGG + chr3.2:84531838-84531857 MS.gene012993:CDS 60.0%
TGACGGAGTAACCTTGCCGG+TGG - chr3.2:84531894-84531913 None:intergenic 60.0%
TGTAACTCCCTCCACCGGCA+AGG + chr3.2:84531880-84531899 MS.gene012993:CDS 60.0%
TTAGAGGGATCGGGGAGCCA+GGG - chr3.2:84532060-84532079 None:intergenic 60.0%
TTTAGAGGGATCGGGGAGCC+AGG - chr3.2:84532061-84532080 None:intergenic 60.0%
! AGGAAGTGCGGAGAGATCGC+TGG - chr3.2:84531935-84531954 None:intergenic 60.0%
AGCGGCGAGGTGGAAGACGA+CGG - chr3.2:84532028-84532047 None:intergenic 65.0%
AGGGTTCAACGAGAGCGGCG+AGG - chr3.2:84532041-84532060 None:intergenic 65.0%
CGGAGTAACCTTGCCGGTGG+AGG - chr3.2:84531891-84531910 None:intergenic 65.0%
GTTCAACGAGAGCGGCGAGG+TGG - chr3.2:84532038-84532057 None:intergenic 65.0%
TCGCCGCTCTCGTTGAACCC+TGG + chr3.2:84532040-84532059 MS.gene012993:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 84531829 84533870 84531829 ID=MS.gene012993
chr3.2 mRNA 84531829 84533870 84531829 ID=MS.gene012993.t1;Parent=MS.gene012993
chr3.2 exon 84531829 84532089 84531829 ID=MS.gene012993.t1.exon1;Parent=MS.gene012993.t1
chr3.2 CDS 84531829 84532089 84531829 ID=cds.MS.gene012993.t1;Parent=MS.gene012993.t1
chr3.2 exon 84532170 84532298 84532170 ID=MS.gene012993.t1.exon2;Parent=MS.gene012993.t1
chr3.2 CDS 84532170 84532298 84532170 ID=cds.MS.gene012993.t1;Parent=MS.gene012993.t1
chr3.2 exon 84532379 84532543 84532379 ID=MS.gene012993.t1.exon3;Parent=MS.gene012993.t1
chr3.2 CDS 84532379 84532543 84532379 ID=cds.MS.gene012993.t1;Parent=MS.gene012993.t1
chr3.2 exon 84533074 84533379 84533074 ID=MS.gene012993.t1.exon4;Parent=MS.gene012993.t1
chr3.2 CDS 84533074 84533379 84533074 ID=cds.MS.gene012993.t1;Parent=MS.gene012993.t1
chr3.2 exon 84533730 84533870 84533730 ID=MS.gene012993.t1.exon5;Parent=MS.gene012993.t1
chr3.2 CDS 84533730 84533870 84533730 ID=cds.MS.gene012993.t1;Parent=MS.gene012993.t1
Gene Sequence

>MS.gene012993

ATGAAGAAGGTTGTGGTGACCGGTGCATCCGGTTACCTTGGTGGAAAGCTCTGTAACTCCCTCCACCGGCAAGGTTACTCCGTCAAGGTCATAGTCAGACCCACCAGCGATCTCTCCGCACTTCCTCCCTCTACCGAAATAGTCTACGGCGACATCACCGATTTTTCATCTCTCCTCTCCGCCTTCTCCGATTGCTCCGTCGTCTTCCACCTCGCCGCTCTCGTTGAACCCTGGCTCCCCGATCCCTCTAAATTCATCACTGTAGGATTCTCCCTCATTTCAAATCCTCCTTAATCCTCTTATTCTGTTAATTAATTCAATCAATTTTCGTTTGAAATTAGGTCAACGTTGAAGGTTTGAAGAATGTGTTGGAAGCGGTGAAGCAAACCAAGACAGTGGAGAAACTTGTTTATACGTCGTCGTTTTTTGCTCTTGGACCAACTGATGGAGCTATTGCTGATGAGAATCAAGTACAATACATCAAATCAATACTTCCATTTTTGCTTTTTTAATTTTTTGTTTTTCTTCTAAATCCTAATTCCAAATGTAGGTTCATCATGAGAAATTTTTCTGCACGGAGTATGAGAAATCAAAGGTTGCTACTGATAAAATTGCATTGCAAGCTGCGTCTGAGGGGGTGCCAATAGTGTTGCTTTATCCTGGGGTAATTTATGGACCTGGAAAAGTCACTGCAGGAAACGTTCTTGCAAAGATGGTACTGTTTTATTTCTTCTTGTGTCTTCTGTTTTCTCATATCTAATGCAGTAGTAGGATAGTTGGATTTAATGCATCTTTGTATTGGCAGCGGGATTGTTAGAATCAGAGTGAACCACCGTGATTTTAGCAAAAGTTACATGCATCTTTGGTATCACAGTGAATTTGCAAAATCACGGTGGGTGACCTTGATTCTAAGAAACTCACTACGATATCAAACATGCTTCAACAAAATCAGGGTGCCACCGTGATTTTGTCGCTAACCACTCATCCATACATACACTTAGAGTTCTGTTATAACATGTATGGATACGCGCTGATTCCACTTGACTCGTGTTACAAAGCTGCTGTATGTTTGAAGCAATAAAGTATAGCTTTGAGTTAACGCACGTTGAAGTTTGTTTTCACTTAATCTAAATCTAAAGTTGGAACAGCCGGGACATCATACTGCCGCTCTAAATTTTGATTTTTTTGTAACATCTAGTTTGAAGTGGAAATGTTGTTTGATATTTATTCTTTTTAATTTTTCAGCTGGTAGAACGTTTTAGTGGTAGATTACCTGGTTACATAGGCAAAGGAAATGATAAATTTTCATTCAGTCACGTGGATGATGTAGTGGAGGGGCACATTGCTGCTATGAAAAAGGGACAAATCGGGGAAAGGTATTTACTGACGGGTGAAAATGCGTCCTTTAATCAAGTTTTTGATATGGCTGCTGTGATCACCAATACTAGAAAACCAATGGTTAGTATCCCTTTGTGTGTGATTGAAGCTTATGGATGGTTGTTAGTTTTAATCTCTCGAATCACTGGAAAGTTACCTTTTATCAGTCCACCGGTAAGCTTCCTTCTGGACTTTGATTTTCAATTTTCATGCATCCAAATCATATACTATCTTATTTTTATCAGAAATTTTTAGCTGACAAATTGATATCTCAGTTAAAAATTTTGTAGACCAAATTTGTTTCAATGTTTAACTGCATAGAAGTGTAAAAATAAATGGCTAAACAAAAAATCCTTTTATGTTTCAAGATTATCCTTCCTAATGGGCAATTGTAAAATAAAATTTCATGGACAAATTCAGTTTTATCTCAATAAATGGGAAACCAAGCGATAGTTTTCAAAAGAAAATAAAGCATATTATCTTCCCTGTTCTCATTTTTTTTTTGTGTTTTAACATTGAACCAGACGGTGCATGTTTTAAGACATCGTTGGGAGTATTCTTACGAGAAAGCTAAAGCGGAGCTAGATTATAAACCCAGAAGCCTGAGAGAAGGGCTTGCAGAGGTATTACTCTGGTTGAAGAACTTGGGATTGGTACAATATTAG

Protein sequence

>MS.gene012993.t1

MKKVVVTGASGYLGGKLCNSLHRQGYSVKVIVRPTSDLSALPPSTEIVYGDITDFSSLLSAFSDCSVVFHLAALVEPWLPDPSKFITVNVEGLKNVLEAVKQTKTVEKLVYTSSFFALGPTDGAIADENQVHHEKFFCTEYEKSKVATDKIALQAASEGVPIVLLYPGVIYGPGKVTAGNVLAKMLVERFSGRLPGYIGKGNDKFSFSHVDDVVEGHIAAMKKGQIGERYLLTGENASFNQVFDMAAVITNTRKPMVSIPLCVIEAYGWLLVLISRITGKLPFISPPTVHVLRHRWEYSYEKAKAELDYKPRSLREGLAEVLLWLKNLGLVQY