Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86082.t1 | XP_003618609.1 | 88.5 | 933 | 73 | 4 | 69 | 1000 | 75 | 974 | 0.00E+00 | 1474.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86082.t1 | Q9LF37 | 77.7 | 929 | 172 | 5 | 64 | 991 | 68 | 962 | 0.0e+00 | 1321.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86082.t1 | G7KLS1 | 88.5 | 933 | 73 | 4 | 69 | 1000 | 75 | 974 | 0.0e+00 | 1474.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049356 | MS.gene86082 | 0.802254 | 6.12E-49 | -1.69E-46 |
MS.gene049369 | MS.gene86082 | 0.810185 | 1.31E-50 | -1.69E-46 |
MS.gene050670 | MS.gene86082 | 0.800445 | 1.44E-48 | -1.69E-46 |
MS.gene053449 | MS.gene86082 | 0.832559 | 8.82E-56 | -1.69E-46 |
MS.gene060193 | MS.gene86082 | 0.803146 | 4.01E-49 | -1.69E-46 |
MS.gene060837 | MS.gene86082 | 0.833892 | 4.11E-56 | -1.69E-46 |
MS.gene061154 | MS.gene86082 | 0.811117 | 8.22E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86082.t1 | MTR_6g013660 | 89.054 | 941 | 69 | 4 | 61 | 1000 | 67 | 974 | 0.0 | 1682 |
MS.gene86082.t1 | MTR_7g012820 | 85.437 | 927 | 101 | 4 | 73 | 998 | 83 | 976 | 0.0 | 1596 |
MS.gene86082.t1 | MTR_7g012820 | 85.345 | 928 | 102 | 4 | 72 | 998 | 11 | 905 | 0.0 | 1596 |
MS.gene86082.t1 | MTR_3g106160 | 64.916 | 952 | 286 | 6 | 47 | 983 | 52 | 970 | 0.0 | 1263 |
MS.gene86082.t1 | MTR_4g109450 | 48.606 | 897 | 409 | 12 | 73 | 961 | 1 | 853 | 0.0 | 817 |
MS.gene86082.t1 | MTR_4g109450 | 49.127 | 859 | 385 | 12 | 73 | 923 | 1 | 815 | 0.0 | 786 |
MS.gene86082.t1 | MTR_7g028970 | 46.875 | 896 | 419 | 12 | 76 | 961 | 4 | 852 | 0.0 | 777 |
MS.gene86082.t1 | MTR_8g100040 | 48.271 | 752 | 282 | 13 | 231 | 969 | 255 | 912 | 0.0 | 664 |
MS.gene86082.t1 | MTR_3g498725 | 47.832 | 761 | 284 | 12 | 231 | 975 | 251 | 914 | 0.0 | 662 |
MS.gene86082.t1 | MTR_3g102830 | 47.606 | 752 | 287 | 10 | 231 | 969 | 256 | 913 | 0.0 | 658 |
MS.gene86082.t1 | MTR_3g098310 | 37.447 | 948 | 439 | 18 | 76 | 970 | 102 | 948 | 0.0 | 590 |
MS.gene86082.t1 | MTR_3g098310 | 37.895 | 760 | 346 | 15 | 76 | 782 | 102 | 788 | 7.14e-156 | 480 |
MS.gene86082.t1 | MTR_2g099075 | 38.446 | 489 | 256 | 4 | 474 | 961 | 4 | 448 | 1.55e-100 | 324 |
MS.gene86082.t1 | MTR_3g461000 | 46.286 | 350 | 156 | 4 | 614 | 963 | 432 | 749 | 2.82e-97 | 325 |
MS.gene86082.t1 | MTR_3g461000 | 35.280 | 428 | 234 | 8 | 76 | 478 | 3 | 412 | 4.99e-69 | 247 |
MS.gene86082.t1 | MTR_2g006950 | 38.366 | 404 | 198 | 6 | 536 | 938 | 2 | 355 | 1.38e-80 | 274 |
MS.gene86082.t1 | MTR_2g006950 | 30.830 | 253 | 115 | 7 | 716 | 962 | 350 | 548 | 1.85e-27 | 119 |
MS.gene86082.t1 | MTR_6g048860 | 59.231 | 130 | 52 | 1 | 231 | 360 | 132 | 260 | 1.71e-45 | 168 |
MS.gene86082.t1 | MTR_6g013600 | 84.884 | 86 | 13 | 0 | 891 | 976 | 11 | 96 | 2.50e-43 | 152 |
MS.gene86082.t1 | MTR_1g076440 | 59.574 | 94 | 38 | 0 | 698 | 791 | 150 | 243 | 4.21e-30 | 122 |
MS.gene86082.t1 | MTR_1614s0010 | 38.249 | 217 | 94 | 6 | 713 | 928 | 1 | 178 | 1.84e-28 | 114 |
MS.gene86082.t1 | MTR_5g098360 | 53.684 | 95 | 43 | 1 | 633 | 727 | 74 | 167 | 3.05e-24 | 100 |
MS.gene86082.t1 | MTR_7g096480 | 39.062 | 128 | 45 | 1 | 605 | 732 | 1 | 95 | 3.07e-19 | 88.6 |
MS.gene86082.t1 | MTR_2g029230 | 52.542 | 59 | 28 | 0 | 235 | 293 | 71 | 129 | 1.05e-13 | 69.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86082.t1 | AT5G15450 | 80.065 | 923 | 149 | 5 | 64 | 985 | 68 | 956 | 0.0 | 1504 |
MS.gene86082.t1 | AT2G25140 | 64.706 | 918 | 282 | 8 | 72 | 987 | 82 | 959 | 0.0 | 1200 |
MS.gene86082.t1 | AT1G74310 | 48.886 | 898 | 402 | 12 | 73 | 961 | 1 | 850 | 0.0 | 821 |
MS.gene86082.t1 | AT1G74310 | 49.302 | 860 | 379 | 12 | 73 | 923 | 1 | 812 | 0.0 | 788 |
MS.gene86082.t1 | AT5G50920 | 48.074 | 753 | 283 | 10 | 231 | 969 | 253 | 911 | 0.0 | 672 |
MS.gene86082.t1 | AT3G48870 | 48.113 | 742 | 281 | 9 | 231 | 962 | 243 | 890 | 0.0 | 665 |
MS.gene86082.t1 | AT3G48870 | 48.113 | 742 | 281 | 9 | 231 | 962 | 274 | 921 | 0.0 | 664 |
MS.gene86082.t1 | AT3G48870 | 48.113 | 742 | 281 | 9 | 231 | 962 | 274 | 921 | 0.0 | 664 |
MS.gene86082.t1 | AT3G48870 | 48.113 | 742 | 281 | 9 | 231 | 962 | 274 | 921 | 0.0 | 664 |
MS.gene86082.t1 | AT4G14670 | 51.504 | 565 | 255 | 6 | 172 | 735 | 76 | 622 | 0.0 | 546 |
MS.gene86082.t1 | AT5G51070 | 46.537 | 361 | 149 | 3 | 610 | 959 | 590 | 917 | 9.69e-104 | 346 |
MS.gene86082.t1 | AT5G51070 | 39.909 | 441 | 225 | 8 | 76 | 479 | 81 | 518 | 1.54e-82 | 288 |
MS.gene86082.t1 | AT3G45450 | 46.597 | 191 | 77 | 5 | 249 | 435 | 151 | 320 | 1.25e-40 | 153 |
MS.gene86082.t1 | AT4G30350 | 25.758 | 264 | 164 | 6 | 645 | 886 | 577 | 830 | 6.50e-13 | 73.6 |
MS.gene86082.t1 | AT5G57710 | 29.747 | 158 | 97 | 4 | 680 | 834 | 655 | 801 | 1.05e-12 | 73.2 |
Find 235 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAATGTATTCCTTCAAATTT+TGG | 0.107959 | 6.3:-8582932 | MS.gene86082:CDS |
ACCTCACAATGCTAATTATT+TGG | 0.181666 | 6.3:+8582584 | None:intergenic |
ATTCAATTGTGTTAGGTTCT+AGG | 0.196643 | 6.3:-8587694 | MS.gene86082:intron |
AGAGAAGTTGTTATATTTAG+AGG | 0.209533 | 6.3:-8583325 | MS.gene86082:CDS |
ATCCAACTTCTTGGAAGTTT+AGG | 0.235052 | 6.3:-8582239 | MS.gene86082:CDS |
AGGGAATTCAAGAAAGAATA+TGG | 0.250468 | 6.3:-8587616 | MS.gene86082:CDS |
TATGAAGCCTTGGGAAAATA+TGG | 0.264162 | 6.3:-8587123 | MS.gene86082:CDS |
TCATCATCTCTTCCTATAAC+AGG | 0.264580 | 6.3:+8587060 | None:intergenic |
AGCAGCTGCTAAACTGAAAA+TGG | 0.272358 | 6.3:-8584436 | MS.gene86082:CDS |
TATTCTTCGAGGAGAATTTA+AGG | 0.278524 | 6.3:-8582141 | MS.gene86082:CDS |
TCAGTTGAGCACTTGGTTCT+TGG | 0.281736 | 6.3:-8587580 | MS.gene86082:CDS |
AATTAGCATTGTGAGGTTAC+AGG | 0.286083 | 6.3:-8582578 | MS.gene86082:intron |
ATCTATTACACGCTGCTTCA+TGG | 0.290601 | 6.3:+8582771 | None:intergenic |
TCCAACTTCTTGGAAGTTTA+GGG | 0.290774 | 6.3:-8582238 | MS.gene86082:CDS |
AAGCTGCTATAGAGGGTGTT+AGG | 0.303615 | 6.3:-8587489 | MS.gene86082:CDS |
TCAGCTTATATCTCTCGATA+TGG | 0.306905 | 6.3:-8586168 | MS.gene86082:intron |
GAACCTGCTATCCAACTTCT+TGG | 0.317322 | 6.3:-8582248 | MS.gene86082:CDS |
AAGAACAATCCTGTGCTAAT+TGG | 0.318260 | 6.3:-8587000 | MS.gene86082:CDS |
GCCGGATCTTCAGCAAGGTT+GGG | 0.334047 | 6.3:-8588491 | MS.gene86082:CDS |
AGGATTGTTCTTTGTTCTCC+TGG | 0.337734 | 6.3:+8587011 | None:intergenic |
ATCCATTACACGCTGCTTCA+TGG | 0.342692 | 6.3:+8582684 | None:intergenic |
AACAAAAGAGGCTTGCTTGC+CGG | 0.347460 | 6.3:-8588509 | MS.gene86082:CDS |
TAACACTGCACCGGCAGATT+TGG | 0.348728 | 6.3:-8582803 | MS.gene86082:CDS |
CTGCACTTGATGAGATTAAT+AGG | 0.349445 | 6.3:-8584395 | MS.gene86082:CDS |
CTTGACCTACAACACGCTTA+TGG | 0.349824 | 6.3:+8583295 | None:intergenic |
AGGGTCAAGTTTGCCTGCTT+TGG | 0.352053 | 6.3:+8587080 | None:intergenic |
GTTTCATATGCCAAATCTTT+CGG | 0.360088 | 6.3:+8582706 | None:intergenic |
CATACTCCCGCTTGGCTTGT+TGG | 0.368618 | 6.3:+8583547 | None:intergenic |
TTTGCCCAAGATCGACCATT+TGG | 0.368720 | 6.3:-8587556 | MS.gene86082:CDS |
GATTGTTGAAGTTTAGAAAT+CGG | 0.371471 | 6.3:+8583354 | None:intergenic |
TTCAATTGTGTTAGGTTCTA+GGG | 0.373490 | 6.3:-8587693 | MS.gene86082:intron |
ATAGCACTAGCAGCAGAAAA+TGG | 0.374293 | 6.3:+8589513 | None:intergenic |
AATCGCTAGCTTCATGTTCA+TGG | 0.375106 | 6.3:-8583202 | MS.gene86082:CDS |
TCTTCCCAAATGGTCGATCT+TGG | 0.379277 | 6.3:+8587551 | None:intergenic |
GCTGAAAATTTGTGGGAGTA+TGG | 0.381255 | 6.3:-8589438 | MS.gene86082:CDS |
TGCCGGATCTTCAGCAAGGT+TGG | 0.388124 | 6.3:-8588492 | MS.gene86082:CDS |
GAATAGTGCACCGAAAGATT+TGG | 0.388532 | 6.3:-8582716 | MS.gene86082:CDS |
GGCAAACTTGACCCTGTTAT+AGG | 0.392977 | 6.3:-8587072 | MS.gene86082:CDS |
ATTTGTGATGAAATCATAAC+TGG | 0.402183 | 6.3:-8589378 | MS.gene86082:CDS |
ATGAGATCCATACAGTTGTT+GGG | 0.403955 | 6.3:-8586040 | MS.gene86082:CDS |
TACTGTGCGGCCGTGTGAAT+CGG | 0.406744 | 6.3:+8582894 | None:intergenic |
GATATGGGTGCACTTATTGC+TGG | 0.413041 | 6.3:-8586152 | MS.gene86082:CDS |
ATTGTTGAAGTTTAGAAATC+GGG | 0.413099 | 6.3:+8583355 | None:intergenic |
AGAGCAGGAATTTACAGAAA+TGG | 0.416137 | 6.3:-8588622 | MS.gene86082:CDS |
TCGAACAAAATAACTGCATA+TGG | 0.420653 | 6.3:+8582985 | None:intergenic |
ACCCTAAACTTCCAAGAAGT+TGG | 0.420686 | 6.3:+8582237 | None:intergenic |
ATTAATTGCAGCTATTGATC+TGG | 0.422423 | 6.3:-8584466 | MS.gene86082:intron |
ATATTCTTTCTTGAATTCCC+TGG | 0.423978 | 6.3:+8587618 | None:intergenic |
CAGACAAAGCTTCTAAAGAT+AGG | 0.424637 | 6.3:-8584326 | MS.gene86082:CDS |
AGCTGCTATAGAGGGTGTTA+GGG | 0.426966 | 6.3:-8587488 | MS.gene86082:CDS |
TGCCATCATCCAAAATTTGA+AGG | 0.432024 | 6.3:+8582923 | None:intergenic |
CGTTTCTGACACTGCACTTG+TGG | 0.432506 | 6.3:-8585098 | MS.gene86082:CDS |
GATGCTGCAAGATCCATCTT+TGG | 0.436829 | 6.3:-8582751 | MS.gene86082:CDS |
CCCCAACCTTGCTGAAGATC+CGG | 0.439453 | 6.3:+8588490 | None:intergenic |
GCTTGGCTTGTTGGATCTCA+AGG | 0.439680 | 6.3:+8583556 | None:intergenic |
CGAGGAGAGCTGCGATGTAT+TGG | 0.442134 | 6.3:-8585277 | MS.gene86082:CDS |
CAGCTTATATCTCTCGATAT+GGG | 0.443958 | 6.3:-8586167 | MS.gene86082:CDS |
AGATTGATCGGTGCTCCTCC+TGG | 0.444968 | 6.3:-8583060 | MS.gene86082:CDS |
ATCTCTAGAAGCTGCTATAG+AGG | 0.446471 | 6.3:-8587497 | MS.gene86082:CDS |
ATGTTGAGAGAGGAAGTTAC+TGG | 0.448848 | 6.3:-8583417 | MS.gene86082:CDS |
ATTTGTATCAGTTGAGCACT+TGG | 0.453165 | 6.3:-8587587 | MS.gene86082:CDS |
CTTCCAAGAAGTTGGATAGC+AGG | 0.453391 | 6.3:+8582245 | None:intergenic |
GTTCTAATAAGGCTTTCATC+AGG | 0.453826 | 6.3:+8588529 | None:intergenic |
TGAAGGAAAATATGAAGCCT+TGG | 0.457590 | 6.3:-8587133 | MS.gene86082:CDS |
ACGAGTAATAATACCTTTGT+CGG | 0.457636 | 6.3:+8585030 | None:intergenic |
ATGTATATATGCAGATAGAC+AGG | 0.459476 | 6.3:-8583584 | MS.gene86082:intron |
GATGAGATCCATACAGTTGT+TGG | 0.460700 | 6.3:-8586041 | MS.gene86082:CDS |
CTTCCCAAATGGTCGATCTT+GGG | 0.460746 | 6.3:+8587552 | None:intergenic |
GAACTCCATAAGCGTGTTGT+AGG | 0.462881 | 6.3:-8583300 | MS.gene86082:CDS |
CTCTCTGATCGATACATAAG+TGG | 0.462931 | 6.3:-8585064 | MS.gene86082:CDS |
TTGCCCAAGATCGACCATTT+GGG | 0.463506 | 6.3:-8587555 | MS.gene86082:CDS |
TTCATGGGCCCCACAGGTGT+TGG | 0.464941 | 6.3:-8583186 | MS.gene86082:CDS |
AAGCCTTATTAGAACAAAAG+AGG | 0.465782 | 6.3:-8588521 | MS.gene86082:CDS |
ACACATTGATTCAGAGAGCC+AGG | 0.466331 | 6.3:-8587636 | MS.gene86082:CDS |
TCGGCTACTGCCTTGACAGC+AGG | 0.466811 | 6.3:+8583270 | None:intergenic |
TTTGATTCATCAAAGCTTGA+GGG | 0.470019 | 6.3:+8586384 | None:intergenic |
GGGAATTCAAGAAAGAATAT+GGG | 0.472098 | 6.3:-8587615 | MS.gene86082:CDS |
AACCTTGATCGATAACTGAT+TGG | 0.474392 | 6.3:+8587461 | None:intergenic |
AGTTACCGAATCTGATGGTC+AGG | 0.479380 | 6.3:-8586078 | MS.gene86082:CDS |
TACCTGCCCCAACAACTGTA+TGG | 0.479767 | 6.3:+8586033 | None:intergenic |
CTAAACAACATCTTCCCAAA+TGG | 0.480900 | 6.3:+8587541 | None:intergenic |
ATCAACTCTGTTCATGAACT+CGG | 0.481373 | 6.3:+8582639 | None:intergenic |
TTCATGTTCATGGGCCCCAC+AGG | 0.481808 | 6.3:-8583192 | MS.gene86082:CDS |
CATGAACTCAGGGCCAAAGA+TGG | 0.482412 | 6.3:+8582738 | None:intergenic |
TATTGCTGGAACAATGTATC+GGG | 0.482817 | 6.3:-8586138 | MS.gene86082:CDS |
TCGAGGAGAATTTAAGGAAG+AGG | 0.483569 | 6.3:-8582135 | MS.gene86082:CDS |
CCGGATCTTCAGCAAGGTTG+GGG | 0.484546 | 6.3:-8588490 | MS.gene86082:CDS |
GAAGGAAAATATGAAGCCTT+GGG | 0.488229 | 6.3:-8587132 | MS.gene86082:CDS |
AAGGCTTTCATCAGGTGCTC+TGG | 0.489281 | 6.3:+8588537 | None:intergenic |
TGTTGAATCACTCGCTTCAC+CGG | 0.489454 | 6.3:+8582191 | None:intergenic |
CTTGCTCAGAGAATTGTTCA+AGG | 0.491713 | 6.3:-8586413 | MS.gene86082:CDS |
TTAAATGAATATATGAGCTC+TGG | 0.492165 | 6.3:-8583447 | MS.gene86082:CDS |
AAGTTTAGAAATCGGGATAC+CGG | 0.497465 | 6.3:+8583362 | None:intergenic |
ATCCATACAGTTGTTGGGGC+AGG | 0.500826 | 6.3:-8586035 | MS.gene86082:intron |
GGATAGCAGGTTCTGTTACT+CGG | 0.501544 | 6.3:+8582258 | None:intergenic |
TCAACTCTGTTCATGAACTC+GGG | 0.501732 | 6.3:+8582640 | None:intergenic |
GCGATCCAACGTTCAAGAGC+AGG | 0.502010 | 6.3:-8583246 | MS.gene86082:CDS |
GGGTGAGCTGACTGAACAAT+GGG | 0.503292 | 6.3:-8584259 | MS.gene86082:CDS |
CTCAAGCTTTGATGAATCAA+AGG | 0.503686 | 6.3:-8586382 | MS.gene86082:CDS |
CCTGTGCTAATTGGTGAGCC+TGG | 0.504014 | 6.3:-8586991 | MS.gene86082:CDS |
ATTCCTCTGAATGTAGTTGT+CGG | 0.505151 | 6.3:+8588440 | None:intergenic |
GAAGTTACTGGGAATGATAT+CGG | 0.505359 | 6.3:-8583405 | MS.gene86082:CDS |
ACCGGTCTAGCACCATAGCT+TGG | 0.505665 | 6.3:+8582209 | None:intergenic |
ATGAAGATGCTGAAAATTTG+TGG | 0.509089 | 6.3:-8589446 | MS.gene86082:CDS |
TTGCTGAGGACGTTGACCAT+TGG | 0.509376 | 6.3:+8582076 | None:intergenic |
CACCAATCAGTTATCGATCA+AGG | 0.511133 | 6.3:-8587463 | MS.gene86082:intron |
TTCGGTAACTTCTTTGAGAA+CGG | 0.514661 | 6.3:+8586091 | None:intergenic |
AATCTACTGCTAAAGACAGC+AGG | 0.516797 | 6.3:-8582019 | MS.gene86082:CDS |
TAAGAGATTACCAGCATCCA+TGG | 0.517072 | 6.3:+8585315 | None:intergenic |
GGTGCACTATTCATGAACTC+AGG | 0.517076 | 6.3:+8582727 | None:intergenic |
TATAACCTGACCATCAGATT+CGG | 0.523678 | 6.3:+8586073 | None:intergenic |
CTTGCAAAGGGTATTCTTCG+AGG | 0.524988 | 6.3:-8582152 | MS.gene86082:CDS |
AACCATGAAGCAGCGTGTAA+TGG | 0.525366 | 6.3:-8582686 | MS.gene86082:CDS |
CGAGTAATAATACCTTTGTC+GGG | 0.525680 | 6.3:+8585031 | None:intergenic |
ATTAATCTCATCAAGTGCAG+TGG | 0.527920 | 6.3:+8584398 | None:intergenic |
TCAGTCTTTCCAACACCTGT+GGG | 0.529244 | 6.3:+8583177 | None:intergenic |
ATCGCTAGCTTCATGTTCAT+GGG | 0.529259 | 6.3:-8583201 | MS.gene86082:CDS |
AAATTTCTTCATATAATCTG+TGG | 0.530253 | 6.3:+8581987 | None:intergenic |
TCCAAGCTATGGTGCTAGAC+CGG | 0.530798 | 6.3:-8582210 | MS.gene86082:CDS |
AATGTATCGGGGAGAATTTG+AGG | 0.532461 | 6.3:-8586126 | MS.gene86082:CDS |
GGTGCTCCTCCTGGATATGT+TGG | 0.538111 | 6.3:-8583051 | MS.gene86082:CDS |
TTCTTTGCAACGTCAACTCG+AGG | 0.538431 | 6.3:-8583484 | MS.gene86082:CDS |
GAAAGATATGAGTTACATCA+TGG | 0.539916 | 6.3:-8585127 | MS.gene86082:CDS |
TTGACAGCAATGGCCAAAGC+AGG | 0.540317 | 6.3:-8587093 | MS.gene86082:CDS |
GGAATCAGCCGGTTCAATGT+GGG | 0.541724 | 6.3:-8587671 | MS.gene86082:CDS |
GTGGAAAATGAACTTGCAAA+GGG | 0.543223 | 6.3:-8582164 | MS.gene86082:CDS |
TGTGGAAAATGAACTTGCAA+AGG | 0.545576 | 6.3:-8582165 | MS.gene86082:CDS |
CATACAGTTTCAAGATTGAT+CGG | 0.545857 | 6.3:-8583072 | MS.gene86082:CDS |
TTATTGCTGGAACAATGTAT+CGG | 0.545967 | 6.3:-8586139 | MS.gene86082:CDS |
GGAAAGACTGCTATTTCTGA+AGG | 0.546350 | 6.3:-8586964 | MS.gene86082:CDS |
GTACTGTGATCCCACATTTG+AGG | 0.547526 | 6.3:+8582843 | None:intergenic |
TCAAGCTTTGATGAATCAAA+GGG | 0.548940 | 6.3:-8586381 | MS.gene86082:intron |
TCTTTGTATCCAACATATCC+AGG | 0.553439 | 6.3:+8583042 | None:intergenic |
GCAATGGCAGGTTTCAGAGC+AGG | 0.555032 | 6.3:-8588637 | MS.gene86082:intron |
GTTTCATATGCCAAATCTGC+CGG | 0.555397 | 6.3:+8582793 | None:intergenic |
ATTAAGATCATACTCCCGCT+TGG | 0.556011 | 6.3:+8583539 | None:intergenic |
TCAACTCGAGGGTGCAGAGA+AGG | 0.557202 | 6.3:-8583472 | MS.gene86082:CDS |
CTTTGATTCATCAAAGCTTG+AGG | 0.557816 | 6.3:+8586383 | None:intergenic |
TGCTTGCCGGATCTTCAGCA+AGG | 0.558893 | 6.3:-8588496 | MS.gene86082:CDS |
GGTGCATTCAAATTCTCTCC+AGG | 0.560236 | 6.3:-8587029 | MS.gene86082:CDS |
TGAGATCCAACAAGCCAAGC+GGG | 0.560563 | 6.3:-8583553 | MS.gene86082:CDS |
CAATGCTAATTATTTGGTGA+CGG | 0.561942 | 6.3:+8582590 | None:intergenic |
CATCATCATGACCTCAAATG+TGG | 0.561967 | 6.3:-8582854 | MS.gene86082:CDS |
AAAATACCATTTCAATCCTG+AGG | 0.562020 | 6.3:-8585159 | MS.gene86082:CDS |
GCGAGTGATTCAACAAAATG+TGG | 0.563340 | 6.3:-8582183 | MS.gene86082:CDS |
ATGAACATGAAGCTAGCGAT+TGG | 0.563501 | 6.3:+8583204 | None:intergenic |
ATAGACCTGCTCTTGAACGT+TGG | 0.564029 | 6.3:+8583241 | None:intergenic |
TGTCGGTAGCCTCAAGAAGG+TGG | 0.564797 | 6.3:+8588457 | None:intergenic |
TGAAAACGACGTTCTAGTGC+AGG | 0.564933 | 6.3:+8585211 | None:intergenic |
ATAGCAGTCTTTCCGACACC+AGG | 0.564961 | 6.3:+8586973 | None:intergenic |
TGCTGTCAAGGCAGTAGCCG+AGG | 0.565302 | 6.3:-8583268 | MS.gene86082:CDS |
ACCAAATAATTAGCATTGTG+AGG | 0.566209 | 6.3:-8582585 | MS.gene86082:CDS |
AGGTCAAGATCCTGCTGTCA+AGG | 0.566975 | 6.3:-8583280 | MS.gene86082:CDS |
TGGAAAGGATTTGACAGCAA+TGG | 0.568299 | 6.3:-8587103 | MS.gene86082:CDS |
TATTGAACATGTAGGAAGCA+AGG | 0.573005 | 6.3:+8583142 | None:intergenic |
CTCAGTCTTTCCAACACCTG+TGG | 0.573869 | 6.3:+8583176 | None:intergenic |
CATCATCTCTTCCTATAACA+GGG | 0.575064 | 6.3:+8587061 | None:intergenic |
GATTGATATGAGTGAGTACA+TGG | 0.581995 | 6.3:-8583100 | MS.gene86082:CDS |
AATCTCTTAAAGCCTATGCT+TGG | 0.582173 | 6.3:-8585301 | MS.gene86082:CDS |
TTTGTTCGATGAGATTGAGA+AGG | 0.582972 | 6.3:-8582971 | MS.gene86082:CDS |
TGAAGATGCTGAAAATTTGT+GGG | 0.583154 | 6.3:-8589445 | MS.gene86082:CDS |
GAATCAGCCGGTTCAATGTG+GGG | 0.583953 | 6.3:-8587670 | MS.gene86082:CDS |
GAGAGAGCTCTGTCTCAAGA+TGG | 0.585617 | 6.3:+8584298 | None:intergenic |
TCAATTGTGTTAGGTTCTAG+GGG | 0.587787 | 6.3:-8587692 | MS.gene86082:intron |
TTAATCTCATCAAGTGCAGT+GGG | 0.587974 | 6.3:+8584399 | None:intergenic |
GGAGAATCATCATCAAGTTG+TGG | 0.588536 | 6.3:-8588562 | MS.gene86082:CDS |
GGGAATCAGCCGGTTCAATG+TGG | 0.591045 | 6.3:-8587672 | MS.gene86082:CDS |
AAATACCATTTCAATCCTGA+GGG | 0.591101 | 6.3:-8585158 | MS.gene86082:CDS |
ATCATCATGACCTCAAATGT+GGG | 0.591622 | 6.3:-8582853 | MS.gene86082:CDS |
TGAGATCCATACAGTTGTTG+GGG | 0.593092 | 6.3:-8586039 | MS.gene86082:CDS |
TTAGGGTACGATCCAAGCTA+TGG | 0.593819 | 6.3:-8582221 | MS.gene86082:CDS |
TCTTCAGTCAATCAAAGAAG+AGG | 0.594648 | 6.3:-8584211 | MS.gene86082:intron |
ATCTACTGCTAAAGACAGCA+GGG | 0.595696 | 6.3:-8582018 | MS.gene86082:CDS |
GTGATGAAATCATAACTGGC+GGG | 0.597821 | 6.3:-8589374 | MS.gene86082:CDS |
ATTATTTGGTGACGGTCAAG+AGG | 0.598093 | 6.3:+8582598 | None:intergenic |
ATTGAACATGTAGGAAGCAA+GGG | 0.598329 | 6.3:+8583143 | None:intergenic |
GAAATTGTGAGCAAGTGGAC+CGG | 0.600648 | 6.3:-8583381 | MS.gene86082:CDS |
ATATTTGTTATAGATCCTGA+AGG | 0.602813 | 6.3:-8587150 | MS.gene86082:intron |
AAAGAAGTTACCGAATCTGA+TGG | 0.606215 | 6.3:-8586083 | MS.gene86082:CDS |
TCGGTGAAATTGTGAGCAAG+TGG | 0.606571 | 6.3:-8583386 | MS.gene86082:CDS |
CTACCGACAACTACATTCAG+AGG | 0.608185 | 6.3:-8588443 | MS.gene86082:CDS |
GTCGGTAGCCTCAAGAAGGT+GGG | 0.609620 | 6.3:+8588458 | None:intergenic |
CGATAACACCCACCTTCTTG+AGG | 0.610339 | 6.3:-8588466 | MS.gene86082:CDS |
GGAATTCAAGAAAGAATATG+GGG | 0.610872 | 6.3:-8587614 | MS.gene86082:CDS |
AGGGTGAGCTGACTGAACAA+TGG | 0.611779 | 6.3:-8584260 | MS.gene86082:CDS |
TTAAAGCCTATGCTTGGTCG+AGG | 0.613593 | 6.3:-8585295 | MS.gene86082:CDS |
CAACTCTGTTCATGAACTCG+GGG | 0.614737 | 6.3:+8582641 | None:intergenic |
CTCGGATGATAACACTGCAC+CGG | 0.614919 | 6.3:-8582812 | MS.gene86082:CDS |
GAGTATGGAATTTCAATCGA+TGG | 0.618860 | 6.3:-8589423 | MS.gene86082:CDS |
CCAGGCTCACCAATTAGCAC+AGG | 0.619879 | 6.3:+8586991 | None:intergenic |
GAGGAATCAGAGCGAACCCA+AGG | 0.620965 | 6.3:-8588424 | MS.gene86082:intron |
ATCGGGGAGAATTTGAGGAT+AGG | 0.621328 | 6.3:-8586121 | MS.gene86082:CDS |
GTGCACTATTCATGAACTCA+GGG | 0.621416 | 6.3:+8582728 | None:intergenic |
TGGATATGTTGGATACAAAG+AGG | 0.622072 | 6.3:-8583040 | MS.gene86082:CDS |
TCTTGAACGTTGGATCGCCT+CGG | 0.622253 | 6.3:+8583251 | None:intergenic |
AGTTGTCGGTAGCCTCAAGA+AGG | 0.622269 | 6.3:+8588454 | None:intergenic |
TCTCTAGAAGCTGCTATAGA+GGG | 0.623553 | 6.3:-8587496 | MS.gene86082:CDS |
GTCATCGCACGAAGTAGCAA+AGG | 0.624955 | 6.3:-8588583 | MS.gene86082:CDS |
TCTCTGATCGATACATAAGT+GGG | 0.626454 | 6.3:-8585063 | MS.gene86082:CDS |
GGATATGTTGGATACAAAGA+GGG | 0.627349 | 6.3:-8583039 | MS.gene86082:CDS |
AGCTCTCCTCGACCAAGCAT+AGG | 0.627767 | 6.3:+8585289 | None:intergenic |
TGTTGAGAGAGGAAGTTACT+GGG | 0.627794 | 6.3:-8583416 | MS.gene86082:CDS |
TCTTTGCAACGTCAACTCGA+GGG | 0.627942 | 6.3:-8583483 | MS.gene86082:CDS |
GAAAGACTGCTATTTCTGAA+GGG | 0.633907 | 6.3:-8586963 | MS.gene86082:intron |
ATCACAGTACATACTCGACT+CGG | 0.633967 | 6.3:-8582830 | MS.gene86082:CDS |
TAGGTTCTAGGGGAATCAGC+CGG | 0.634482 | 6.3:-8587682 | MS.gene86082:CDS |
TGGTAAGTCTATGTTGAGAG+AGG | 0.634759 | 6.3:-8583427 | MS.gene86082:CDS |
CTAATTGGTGAGCCTGGTGT+CGG | 0.638591 | 6.3:-8586985 | MS.gene86082:CDS |
AGCCTTGGGAAAATATGGAA+AGG | 0.639280 | 6.3:-8587118 | MS.gene86082:CDS |
GCATCGAACATATATTGAGA+AGG | 0.639636 | 6.3:-8585236 | MS.gene86082:CDS |
TGTGATGAAATCATAACTGG+CGG | 0.639844 | 6.3:-8589375 | MS.gene86082:CDS |
AATCAGCCGGTTCAATGTGG+GGG | 0.642413 | 6.3:-8587669 | MS.gene86082:CDS |
CACATTGATTCAGAGAGCCA+GGG | 0.643877 | 6.3:-8587635 | MS.gene86082:CDS |
TATGTTGGATACAAAGAGGG+AGG | 0.646058 | 6.3:-8583036 | MS.gene86082:CDS |
TTCTTCTGTATTGAACATGT+AGG | 0.647488 | 6.3:+8583134 | None:intergenic |
ATACAGAAGAAGCACTTGTG+CGG | 0.653790 | 6.3:-8583122 | MS.gene86082:CDS |
ATGTTGGATACAAAGAGGGA+GGG | 0.657057 | 6.3:-8583035 | MS.gene86082:CDS |
GAAGTCACAATACTCGCCAA+TGG | 0.657171 | 6.3:-8582092 | MS.gene86082:CDS |
TGGAAAGACTGAGTTAGCAA+AGG | 0.659226 | 6.3:-8583166 | MS.gene86082:CDS |
GATGGTCTGATCTATACAAG+TGG | 0.660743 | 6.3:+8589334 | None:intergenic |
AAGCTAGCGATTGGACGATG+AGG | 0.662558 | 6.3:+8583213 | None:intergenic |
ATACCATTTCAATCCTGAGG+GGG | 0.668615 | 6.3:-8585156 | MS.gene86082:CDS |
GGTCATGATGATGACAGTGT+TGG | 0.668891 | 6.3:+8582864 | None:intergenic |
GCTGCTATAGAGGGTGTTAG+GGG | 0.676563 | 6.3:-8587487 | MS.gene86082:CDS |
GAAGAGATGATGAAATACGC+AGG | 0.680478 | 6.3:-8587050 | MS.gene86082:CDS |
AGGAATTTACAGAAATGGCG+TGG | 0.681711 | 6.3:-8588617 | MS.gene86082:CDS |
CTGATCGATACATAAGTGGG+AGG | 0.688998 | 6.3:-8585060 | MS.gene86082:CDS |
TTGAGATCCAACAAGCCAAG+CGG | 0.701139 | 6.3:-8583554 | MS.gene86082:CDS |
CAGTCTTTCCAACACCTGTG+GGG | 0.704473 | 6.3:+8583178 | None:intergenic |
TGTATATATGCAGATAGACA+GGG | 0.710105 | 6.3:-8583583 | MS.gene86082:intron |
GGCAGAGTAACCGATTCACA+CGG | 0.713844 | 6.3:-8582904 | MS.gene86082:CDS |
ATTGCTGGAACAATGTATCG+GGG | 0.718034 | 6.3:-8586137 | MS.gene86082:CDS |
TTGTATCCAACATATCCAGG+AGG | 0.741653 | 6.3:+8583045 | None:intergenic |
AATACCATTTCAATCCTGAG+GGG | 0.743088 | 6.3:-8585157 | MS.gene86082:CDS |
TGTTGGTAAAACTTACTGTG+CGG | 0.745186 | 6.3:+8582881 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.3 | gene | 8581995 | 8589547 | 8581995 | ID=MS.gene86082 |
chr6.3 | mRNA | 8581995 | 8589547 | 8581995 | ID=MS.gene86082.t1;Parent=MS.gene86082 |
chr6.3 | exon | 8589332 | 8589547 | 8589332 | ID=MS.gene86082.t1.exon1;Parent=MS.gene86082.t1 |
chr6.3 | CDS | 8589332 | 8589547 | 8589332 | ID=cds.MS.gene86082.t1;Parent=MS.gene86082.t1 |
chr6.3 | exon | 8588425 | 8588649 | 8588425 | ID=MS.gene86082.t1.exon2;Parent=MS.gene86082.t1 |
chr6.3 | CDS | 8588425 | 8588649 | 8588425 | ID=cds.MS.gene86082.t1;Parent=MS.gene86082.t1 |
chr6.3 | exon | 8587464 | 8587701 | 8587464 | ID=MS.gene86082.t1.exon3;Parent=MS.gene86082.t1 |
chr6.3 | CDS | 8587464 | 8587701 | 8587464 | ID=cds.MS.gene86082.t1;Parent=MS.gene86082.t1 |
chr6.3 | exon | 8586964 | 8587159 | 8586964 | ID=MS.gene86082.t1.exon4;Parent=MS.gene86082.t1 |
chr6.3 | CDS | 8586964 | 8587159 | 8586964 | ID=cds.MS.gene86082.t1;Parent=MS.gene86082.t1 |
chr6.3 | exon | 8586382 | 8586436 | 8586382 | ID=MS.gene86082.t1.exon5;Parent=MS.gene86082.t1 |
chr6.3 | CDS | 8586382 | 8586436 | 8586382 | ID=cds.MS.gene86082.t1;Parent=MS.gene86082.t1 |
chr6.3 | exon | 8586036 | 8586186 | 8586036 | ID=MS.gene86082.t1.exon6;Parent=MS.gene86082.t1 |
chr6.3 | CDS | 8586036 | 8586186 | 8586036 | ID=cds.MS.gene86082.t1;Parent=MS.gene86082.t1 |
chr6.3 | exon | 8585044 | 8585355 | 8585044 | ID=MS.gene86082.t1.exon7;Parent=MS.gene86082.t1 |
chr6.3 | CDS | 8585044 | 8585355 | 8585044 | ID=cds.MS.gene86082.t1;Parent=MS.gene86082.t1 |
chr6.3 | exon | 8584212 | 8584477 | 8584212 | ID=MS.gene86082.t1.exon8;Parent=MS.gene86082.t1 |
chr6.3 | CDS | 8584212 | 8584477 | 8584212 | ID=cds.MS.gene86082.t1;Parent=MS.gene86082.t1 |
chr6.3 | exon | 8582579 | 8583592 | 8582579 | ID=MS.gene86082.t1.exon9;Parent=MS.gene86082.t1 |
chr6.3 | CDS | 8582579 | 8583592 | 8582579 | ID=cds.MS.gene86082.t1;Parent=MS.gene86082.t1 |
chr6.3 | exon | 8581995 | 8582324 | 8581995 | ID=MS.gene86082.t1.exon10;Parent=MS.gene86082.t1 |
chr6.3 | CDS | 8581995 | 8582324 | 8581995 | ID=cds.MS.gene86082.t1;Parent=MS.gene86082.t1 |
Gene Sequence |
Protein sequence |