AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene86088

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86088.t1 MTR_6g013840 98.687 533 7 0 1 533 1 533 0.0 1101
MS.gene86088.t1 MTR_7g012370 87.954 523 58 1 1 518 1 523 0.0 956
MS.gene86088.t1 MTR_7g012370 88.288 444 47 1 1 439 1 444 0.0 806
MS.gene86088.t1 MTR_2g082650 51.977 531 253 2 1 530 10 539 0.0 589
MS.gene86088.t1 MTR_2g082650 55.283 407 182 0 124 530 4 410 1.45e-180 514
MS.gene86088.t1 MTR_4g133570 47.305 501 206 4 33 530 17 462 8.80e-164 473
MS.gene86088.t1 MTR_3g452360 46.016 502 252 5 33 531 44 529 3.10e-159 464
MS.gene86088.t1 MTR_3g452360 48.974 390 186 2 145 531 1 380 1.15e-135 398
MS.gene86088.t1 MTR_8g092000 42.956 433 216 7 105 530 170 578 3.97e-119 363
MS.gene86088.t1 MTR_2g015550 41.463 451 224 10 92 529 108 531 3.24e-118 359
MS.gene86088.t1 MTR_7g075840 44.524 420 208 7 116 532 267 664 1.13e-117 362
MS.gene86088.t1 MTR_2g027740 42.404 441 231 8 92 530 246 665 2.29e-116 358
MS.gene86088.t1 MTR_3g107930 40.930 430 233 6 101 530 178 586 2.04e-113 348
MS.gene86088.t1 MTR_3g107930 40.930 430 233 6 101 530 255 663 1.92e-112 348
MS.gene86088.t1 MTR_8g033360 43.570 381 198 6 116 496 234 597 8.51e-108 338
MS.gene86088.t1 MTR_4g109890 39.225 413 232 5 116 528 139 532 2.45e-105 326
MS.gene86088.t1 MTR_7g055600 42.308 416 215 9 119 530 38 432 2.65e-104 320
MS.gene86088.t1 MTR_7g057530 42.308 416 215 9 119 530 38 432 2.65e-104 320
MS.gene86088.t1 MTR_6g016380 40.291 412 224 7 120 529 161 552 3.16e-96 303
MS.gene86088.t1 MTR_2g006790 40.050 402 197 7 129 529 149 507 6.98e-96 301
MS.gene86088.t1 MTR_2g461670 36.627 415 244 6 116 530 194 589 1.03e-95 303
MS.gene86088.t1 MTR_7g096160 33.831 402 223 5 130 530 293 652 1.69e-82 270
MS.gene86088.t1 MTR_1g070490 32.353 408 221 8 133 532 239 599 4.80e-62 214
MS.gene86088.t1 MTR_7g074680 34.054 370 202 9 166 530 231 563 9.87e-54 191
MS.gene86088.t1 MTR_7g074680 34.054 370 202 9 166 530 271 603 1.85e-53 191
MS.gene86088.t1 MTR_7g074680 34.054 370 202 9 166 530 291 623 2.41e-53 191
MS.gene86088.t1 MTR_7g074680 34.054 370 202 9 166 530 291 623 3.20e-53 191
MS.gene86088.t1 MTR_7g074680 34.054 370 202 9 166 530 328 660 3.89e-53 191
MS.gene86088.t1 MTR_7g074680 34.054 370 202 9 166 530 311 643 4.46e-53 191
MS.gene86088.t1 MTR_4g133942 42.512 207 82 4 327 530 160 332 2.23e-43 157
MS.gene86088.t1 MTR_4g118030 32.418 182 112 5 329 505 145 320 3.66e-24 103
MS.gene86088.t1 MTR_5g036580 28.125 352 195 16 181 520 54 359 3.96e-23 102
MS.gene86088.t1 MTR_3g092310 31.383 188 105 7 329 505 140 314 1.29e-20 93.6
MS.gene86088.t1 MTR_7g094230 29.670 182 116 6 329 505 151 325 1.50e-20 93.6
MS.gene86088.t1 MTR_3g111600 29.949 197 124 7 329 517 80 270 8.61e-20 90.1
MS.gene86088.t1 MTR_6g008900 30.939 181 112 6 329 502 165 339 2.46e-19 90.1
MS.gene86088.t1 MTR_4g071620 30.939 181 112 6 329 502 165 339 2.46e-19 90.1
MS.gene86088.t1 MTR_7g109210 31.844 179 110 7 329 502 159 330 2.63e-19 90.1
MS.gene86088.t1 MTR_8g078240 28.571 203 121 8 329 517 142 334 5.63e-18 85.9
MS.gene86088.t1 MTR_1g021855 25.237 317 179 13 211 517 88 356 8.47e-17 82.4
MS.gene86088.t1 MTR_1g089820 30.387 181 116 5 329 505 154 328 9.71e-17 82.4
MS.gene86088.t1 MTR_5g019220 27.411 197 129 6 329 517 166 356 3.49e-16 80.9
MS.gene86088.t1 MTR_4g081360 45.833 72 23 1 462 533 4 59 9.54e-15 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86088.t1 AT5G15470 84.398 532 83 0 1 532 1 532 0.0 946
MS.gene86088.t1 AT3G01040 84.023 532 85 0 1 532 1 532 0.0 943
MS.gene86088.t1 AT3G01040 84.023 532 85 0 1 532 1 532 0.0 943
MS.gene86088.t1 AT3G01040 78.759 532 80 1 1 532 1 499 0.0 865
MS.gene86088.t1 AT5G54690 52.150 535 254 2 1 533 1 535 0.0 587
MS.gene86088.t1 AT3G58790 45.703 512 250 9 34 531 42 539 1.21e-149 440
MS.gene86088.t1 AT3G58790 48.309 414 201 4 124 531 1 407 3.40e-139 408
MS.gene86088.t1 AT3G61130 40.481 457 233 7 83 532 249 673 1.37e-123 377
MS.gene86088.t1 AT5G47780 43.590 429 220 8 103 530 207 614 6.12e-123 374
MS.gene86088.t1 AT3G25140 42.353 425 223 8 106 529 153 556 1.30e-113 348
MS.gene86088.t1 AT4G38270 40.991 444 234 8 100 532 254 680 2.18e-113 351
MS.gene86088.t1 AT4G38270 40.991 444 234 8 100 532 250 676 2.70e-113 351
MS.gene86088.t1 AT1G18580 38.824 425 233 6 114 528 127 534 1.81e-110 339
MS.gene86088.t1 AT2G46480 40.000 435 241 5 101 532 123 540 5.73e-108 333
MS.gene86088.t1 AT2G46480 40.000 435 241 5 101 532 136 553 7.97e-108 333
MS.gene86088.t1 AT2G20810 43.521 409 199 10 129 529 150 534 5.73e-104 322
MS.gene86088.t1 AT2G46480 37.241 435 228 5 101 532 123 515 2.97e-96 302
MS.gene86088.t1 AT2G46480 37.241 435 228 5 101 532 136 528 3.00e-96 302
MS.gene86088.t1 AT3G02350 40.233 430 225 6 115 530 148 559 8.56e-96 302
MS.gene86088.t1 AT1G06780 34.879 453 245 8 88 530 175 587 2.81e-87 281
MS.gene86088.t1 AT1G06780 34.879 453 245 8 88 530 188 600 3.63e-87 281
MS.gene86088.t1 AT2G30575 35.240 437 236 7 101 530 212 608 1.30e-85 277
MS.gene86088.t1 AT2G38650 31.004 458 270 9 82 530 197 617 2.35e-60 210
MS.gene86088.t1 AT2G38650 31.004 458 270 9 82 530 197 617 2.35e-60 210
MS.gene86088.t1 AT2G38650 31.063 367 208 8 82 439 197 527 9.50e-39 149
MS.gene86088.t1 AT1G70090 25.936 374 222 15 164 526 39 368 1.02e-23 103
MS.gene86088.t1 AT1G70090 25.936 374 222 15 164 526 39 368 1.02e-23 103
MS.gene86088.t1 AT4G02130 30.288 208 127 7 329 529 150 346 4.41e-23 100
MS.gene86088.t1 AT4G02130 30.288 208 127 7 329 529 150 346 4.41e-23 100
MS.gene86088.t1 AT4G02130 30.288 208 127 7 329 529 150 346 4.41e-23 100
MS.gene86088.t1 AT3G06260 28.649 185 114 6 329 505 150 324 5.96e-22 97.8
MS.gene86088.t1 AT1G24170 30.918 207 127 9 329 526 172 371 3.08e-21 96.3
MS.gene86088.t1 AT1G02720 23.839 323 194 9 211 529 87 361 6.40e-21 94.7
MS.gene86088.t1 AT1G02720 23.839 323 194 9 211 529 87 361 6.40e-21 94.7
MS.gene86088.t1 AT3G28340 30.978 184 117 6 327 505 153 331 1.44e-20 94.0
MS.gene86088.t1 AT3G62660 29.592 196 128 5 329 520 164 353 6.74e-20 92.0
MS.gene86088.t1 AT1G13250 26.776 366 205 14 168 517 15 333 8.91e-19 88.2
MS.gene86088.t1 AT3G50760 25.705 319 173 14 200 505 47 314 7.86e-18 85.5
MS.gene86088.t1 AT1G19300 27.919 197 128 7 329 517 150 340 3.70e-16 80.5

Find 125 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACATTCGCTTTCATGTTAA+AGG 0.126539 6.3:-8640778 MS.gene86088:CDS
TTGAACATCTTAAACCATTT+TGG 0.154011 6.3:-8637963 MS.gene86088:CDS
TTCATCCAATTGACCCTTCT+TGG 0.214807 6.3:-8638092 MS.gene86088:CDS
GGATGAGGATAGTATGAAAA+AGG 0.268000 6.3:+8642258 None:intergenic
TTGACGTACTTGGTCCAAAA+TGG 0.281737 6.3:+8637949 None:intergenic
GTCAACAAGTGTTCCTCTTT+TGG 0.296774 6.3:-8642179 MS.gene86088:intron
GAGAGACAATTAATCCCTTT+AGG 0.301851 6.3:+8639947 None:intergenic
TCTTGGCACATGCTTGGTTT+AGG 0.308022 6.3:-8638075 MS.gene86088:CDS
CCAGCTTTGATTGCATTTAG+AGG 0.308527 6.3:-8638120 MS.gene86088:CDS
GATCTGAAAGGTAAAGTTAA+TGG 0.328018 6.3:-8638839 MS.gene86088:CDS
CGGTTAGGACCAAGGTTTCT+TGG 0.335420 6.3:-8641064 MS.gene86088:CDS
AAGTGTTGAAAATGTGAAAA+TGG 0.338980 6.3:-8638037 MS.gene86088:CDS
TATCAGTTGACAAAATAAAA+TGG 0.347420 6.3:+8639828 None:intergenic
AAAACCACCTTGTCAAGGTT+TGG 0.349334 6.3:+8638914 None:intergenic
TCCCCTCATTGCAAAGCATT+TGG 0.353518 6.3:-8638741 MS.gene86088:CDS
GACGAGTGTGCTTGGGCTTA+CGG 0.356516 6.3:-8638713 MS.gene86088:CDS
ACCAGATTCATTTGATCAAA+TGG 0.357296 6.3:-8640835 MS.gene86088:CDS
ACGAGTGTGCTTGGGCTTAC+GGG 0.359380 6.3:-8638712 MS.gene86088:CDS
TAACATGAAAGCGAATGTTT+TGG 0.359941 6.3:+8640782 None:intergenic
TTAGAGAGACATATCATTCC+TGG 0.366476 6.3:-8638649 MS.gene86088:CDS
ACTGCTGTTGTTACCCTTGA+AGG 0.367335 6.3:-8642203 MS.gene86088:CDS
CTTACGCGGGTATGCACTCT+TGG 0.369763 6.3:-8639712 MS.gene86088:CDS
AAACCACCTTGTCAAGGTTT+GGG 0.377869 6.3:+8638915 None:intergenic
CGCTTTCATGTTAAAGGGAA+TGG 0.380532 6.3:-8640772 MS.gene86088:intron
TTGTCTCTCCCTGCGTTTGA+CGG 0.382686 6.3:-8639933 MS.gene86088:CDS
AGAGACAATTAATCCCTTTA+GGG 0.383279 6.3:+8639948 None:intergenic
TAAGCCCAAGCACACTCGTC+AGG 0.385142 6.3:+8638716 None:intergenic
TCAAAACCCTGGTTAGAGAT+TGG 0.389329 6.3:-8637988 MS.gene86088:CDS
TCTGGTAGCTTTAAACTAGA+TGG 0.389890 6.3:+8640852 None:intergenic
GAAGCTGTAGAAAGTCAAAA+TGG 0.390177 6.3:-8639599 MS.gene86088:CDS
CAGCTAGTTCCGTCCCTAAA+GGG 0.392610 6.3:-8639961 MS.gene86088:CDS
ACCATTTGATCAAATGAATC+TGG 0.400561 6.3:+8640834 None:intergenic
GACCCTTCTTGGCACATGCT+TGG 0.403772 6.3:-8638081 MS.gene86088:CDS
TTTGTCAACTGATAACATCT+TGG 0.408826 6.3:-8639819 MS.gene86088:CDS
TGGACCCTGACGAGTGTGCT+TGG 0.412842 6.3:-8638721 MS.gene86088:CDS
CCATTCATCTTCGCCTCTGC+AGG 0.414627 6.3:+8638805 None:intergenic
TTCAGATCCATTTCCCATAG+TGG 0.415989 6.3:+8638854 None:intergenic
ACATTCGCTTTCATGTTAAA+GGG 0.420527 6.3:-8640777 MS.gene86088:CDS
TAGAAAGTCAAAATGGAATC+AGG 0.420648 6.3:-8639592 MS.gene86088:CDS
ATTTGAATAATTGACGTACT+TGG 0.420726 6.3:+8637939 None:intergenic
CTTGTCTCCACTATGGGAAA+TGG 0.424337 6.3:-8638861 MS.gene86088:CDS
GGACCCTGACGAGTGTGCTT+GGG 0.437564 6.3:-8638720 MS.gene86088:CDS
CCTGCAGAGGCGAAGATGAA+TGG 0.439534 6.3:-8638805 MS.gene86088:CDS
TGTTAGGAACTGTCATATCA+TGG 0.445538 6.3:-8637911 MS.gene86088:CDS
CGATGCAAATTTACGCGGAC+TGG 0.446443 6.3:+8639523 None:intergenic
AACACTTGTTGACACCTTCA+AGG 0.448025 6.3:+8642189 None:intergenic
ATACTCAACGAAGTGAAAAC+CGG 0.449343 6.3:-8640882 MS.gene86088:CDS
CTCCAGATTGTTTAGGTAGA+CGG 0.465850 6.3:-8641084 MS.gene86088:intron
TTGAGTAGAGATATGTACTT+TGG 0.466680 6.3:+8639482 None:intergenic
GCAGCTAGTTCCGTCCCTAA+AGG 0.466800 6.3:-8639962 MS.gene86088:CDS
GATTGTTTAGGTAGACGGTT+AGG 0.482503 6.3:-8641079 MS.gene86088:CDS
GTCCAAATGCTTTGCAATGA+GGG 0.482612 6.3:+8638739 None:intergenic
AAGGCATTCATCAGTTTGAC+TGG 0.484525 6.3:-8639649 MS.gene86088:CDS
AGCGTGACTTGTCTCCACTA+TGG 0.487829 6.3:-8638868 MS.gene86088:CDS
CGGACTGGTATCACTGAGAT+TGG 0.490436 6.3:+8639538 None:intergenic
TATTGACTTGATGAAGATCA+AGG 0.490549 6.3:-8642309 MS.gene86088:CDS
CTGCAGAGGCGAAGATGAAT+GGG 0.490749 6.3:-8638804 MS.gene86088:CDS
CTTTCTACAGCTTCAAGTAC+CGG 0.492320 6.3:+8639608 None:intergenic
CTACCATGGGAATCATATGA+TGG 0.494537 6.3:-8639564 MS.gene86088:CDS
AAACCAAGCATGTGCCAAGA+AGG 0.496716 6.3:+8638078 None:intergenic
AATGCTTTGCAATGAGGGGA+TGG 0.500809 6.3:+8638744 None:intergenic
TGCAATCAAAGCTGGAGGTA+GGG 0.504163 6.3:+8638128 None:intergenic
GCGTGACTTGTCTCCACTAT+GGG 0.506516 6.3:-8638867 MS.gene86088:CDS
ATGTGCCAAGAAGGGTCAAT+TGG 0.506954 6.3:+8638087 None:intergenic
GCAGTGAGAATGAAGACAAA+AGG 0.512223 6.3:+8642221 None:intergenic
CCTTTGACTTCAACAATAGC+AGG 0.512844 6.3:+8639668 None:intergenic
CCTCTAAATGCAATCAAAGC+TGG 0.515559 6.3:+8638120 None:intergenic
TAGGACCAAGGTTTCTTGGA+AGG 0.519788 6.3:-8641060 MS.gene86088:CDS
AAAATGGTGGAAAGAGTTGT+CGG 0.520427 6.3:+8639844 None:intergenic
CAGAGACGATTGTACGGTAG+AGG 0.520854 6.3:+8639778 None:intergenic
GTTAACTAGAGAAAATGTTC+CGG 0.520998 6.3:-8639627 MS.gene86088:CDS
TAAACTAGATGGAACTTCCC+CGG 0.530983 6.3:+8640863 None:intergenic
ATGCAATCAAAGCTGGAGGT+AGG 0.533662 6.3:+8638127 None:intergenic
TTCAAAACCAATCTCTAACC+AGG 0.538355 6.3:+8637981 None:intergenic
AGTATTCATCCGTCAAACGC+AGG 0.538404 6.3:+8639924 None:intergenic
CCTGCTATTGTTGAAGTCAA+AGG 0.539912 6.3:-8639668 MS.gene86088:CDS
AGGACCAAGGTTTCTTGGAA+GGG 0.540524 6.3:-8641059 MS.gene86088:CDS
TCACGATATCAAGCAACAAT+GGG 0.541351 6.3:-8642334 MS.gene86088:CDS
AACATGACAATGTGGAAGCT+CGG 0.543243 6.3:-8638153 MS.gene86088:CDS
ACGCAAACAATTGCCTCCTC+CGG 0.544910 6.3:-8639885 MS.gene86088:CDS
GACTTCAACAATAGCAGGTG+AGG 0.546866 6.3:+8639673 None:intergenic
ATCACGATATCAAGCAACAA+TGG 0.566171 6.3:-8642335 MS.gene86088:CDS
TACTCAACGAAGTGAAAACC+GGG 0.568890 6.3:-8640881 MS.gene86088:CDS
ATTGGTAGTAACTCCGGAGG+AGG 0.569825 6.3:+8639872 None:intergenic
ATGCTTTGCAATGAGGGGAT+GGG 0.570529 6.3:+8638745 None:intergenic
ATATCATTCCTGGCTTAAAG+AGG 0.573190 6.3:-8638639 MS.gene86088:intron
TACCATGGGAATCATATGAT+GGG 0.578652 6.3:-8639563 MS.gene86088:CDS
TCAAAACCAATCTCTAACCA+GGG 0.579436 6.3:+8637982 None:intergenic
GAGAGCATTGGTAGTAACTC+CGG 0.582594 6.3:+8639866 None:intergenic
GTATTCATCCGTCAAACGCA+GGG 0.582839 6.3:+8639925 None:intergenic
GGTCCAAATGCTTTGCAATG+AGG 0.583301 6.3:+8638738 None:intergenic
ATGAAAAGGAGTACCAAAAG+AGG 0.583626 6.3:+8642166 None:intergenic
ATCGTGATGCTTCTCATGCT+AGG 0.584628 6.3:+8642350 None:intergenic
AACCAAGCATGTGCCAAGAA+GGG 0.585551 6.3:+8638079 None:intergenic
AAGCCCAAGCACACTCGTCA+GGG 0.585973 6.3:+8638717 None:intergenic
TTCCCATCATATGATTCCCA+TGG 0.590016 6.3:+8639561 None:intergenic
TCAACCCTTCCAAGAAACCT+TGG 0.592557 6.3:+8641055 None:intergenic
TAGGTAGACGGTTAGGACCA+AGG 0.593215 6.3:-8641072 MS.gene86088:CDS
GAATCAGGAATTACTACCAT+GGG 0.594608 6.3:-8639577 MS.gene86088:CDS
AAAGAGTTGTCGGAGAGCAT+TGG 0.594891 6.3:+8639854 None:intergenic
GCTGCTGTTATTCATTACAA+TGG 0.594951 6.3:-8638015 MS.gene86088:CDS
AGGTAAAGTTAATGGAGCTG+TGG 0.595738 6.3:-8638831 MS.gene86088:CDS
ACACTTGTTGACACCTTCAA+GGG 0.596098 6.3:+8642190 None:intergenic
ACAATTAATCCCTTTAGGGA+CGG 0.597680 6.3:+8639952 None:intergenic
GGAATCAGGAATTACTACCA+TGG 0.608361 6.3:-8639578 MS.gene86088:CDS
AGGTTTCAGAGACGATTGTA+CGG 0.609883 6.3:+8639772 None:intergenic
ACTTCAACAATAGCAGGTGA+GGG 0.611455 6.3:+8639674 None:intergenic
CTATGGGAAATGGATCTGAA+AGG 0.611838 6.3:-8638851 MS.gene86088:CDS
ATGTCTTTGATCTTCGTGCA+TGG 0.621585 6.3:-8638685 MS.gene86088:CDS
ACAATGGCCAATCAAAACCC+TGG 0.622866 6.3:-8637999 MS.gene86088:CDS
TCCAAATGCTTTGCAATGAG+GGG 0.630439 6.3:+8638740 None:intergenic
TGGAAGGGTTGACGATTCAG+CGG 0.631662 6.3:-8641044 MS.gene86088:intron
CTAAATGCAATCAAAGCTGG+AGG 0.656439 6.3:+8638123 None:intergenic
TCAACAATAGCAGGTGAGGG+AGG 0.656534 6.3:+8639677 None:intergenic
GTTGTGTATGGCAGAATCTG+AGG 0.659867 6.3:-8638179 MS.gene86088:intron
CAGTTGACAAAATAAAATGG+TGG 0.662661 6.3:+8639831 None:intergenic
TTACCCAAACCTTGACAAGG+TGG 0.662757 6.3:-8638918 MS.gene86088:CDS
AATTTCGATGCAAATTTACG+CGG 0.665191 6.3:+8639518 None:intergenic
GCTTTACCCAAACCTTGACA+AGG 0.681111 6.3:-8638921 MS.gene86088:CDS
TGAGGTCAAACATGACAATG+TGG 0.682233 6.3:-8638161 MS.gene86088:CDS
TTACCTCAGGAATATATATG+CGG 0.688304 6.3:+8639453 None:intergenic
AGCATTGGTAGTAACTCCGG+AGG 0.693741 6.3:+8639869 None:intergenic
TATCCGCATATATATTCCTG+AGG 0.697760 6.3:-8639456 MS.gene86088:intron
GGAGCTGTGGAAACCTGCAG+AGG 0.699464 6.3:-8638818 MS.gene86088:CDS
ACTCAACGAAGTGAAAACCG+GGG 0.787995 6.3:-8640880 MS.gene86088:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGTTGTATATTAATATATT+TGG - chr6.3:8641783-8641802 MS.gene86088:intron 10.0%
!!! ATATTAATATATTTGGTAAT+TGG - chr6.3:8641790-8641809 MS.gene86088:intron 10.0%
!!! ATTATTATTTTATGAGAAAA+TGG - chr6.3:8639933-8639952 MS.gene86088:CDS 10.0%
!!! TTATTATTTTATGAGAAAAT+GGG - chr6.3:8639934-8639953 MS.gene86088:CDS 10.0%
!!! TTTAATCATTCAAAATTTTA+CGG - chr6.3:8641687-8641706 MS.gene86088:intron 10.0%
!! TTTGAATGATTAAATGATAT+TGG + chr6.3:8641681-8641700 None:intergenic 15.0%
!!! ATTAATCATAACAGAATTTT+CGG - chr6.3:8640151-8640170 MS.gene86088:intron 15.0%
!!! ATTATTCAAATGATTTTGTT+AGG - chr6.3:8642344-8642363 MS.gene86088:CDS 15.0%
!!! TTGATTTGAAATTTGAATAT+TGG - chr6.3:8638265-8638284 MS.gene86088:intron 15.0%
!! AACAAAAAGAAAAACATAAG+AGG + chr6.3:8638131-8638150 None:intergenic 20.0%
!! AATTAGTATTAATTCGTGAA+AGG - chr6.3:8639568-8639587 MS.gene86088:CDS 20.0%
!! ACTAACTATTAGATATGAAA+AGG + chr6.3:8640128-8640147 None:intergenic 20.0%
!! ATTAAATGATATTGGATTGA+GGG + chr6.3:8641673-8641692 None:intergenic 20.0%
!! ATTAGTATTAATTCGTGAAA+GGG - chr6.3:8639569-8639588 MS.gene86088:CDS 20.0%
!! CTAACTATTAGATATGAAAA+GGG + chr6.3:8640127-8640146 None:intergenic 20.0%
!! TATCAGTTGACAAAATAAAA+TGG + chr6.3:8640446-8640465 None:intergenic 20.0%
!! TTCACAAAAACATAATTTGA+AGG + chr6.3:8642049-8642068 None:intergenic 20.0%
!!! ATAGATAACCATTACTTTTA+TGG - chr6.3:8639729-8639748 MS.gene86088:CDS 20.0%
!!! ATTAACTTTTAGAACCAAAT+AGG + chr6.3:8639099-8639118 None:intergenic 20.0%
!!! GATAAACTTTTATTAGATGA+CGG - chr6.3:8640064-8640083 MS.gene86088:intron 20.0%
!!! GTTTTTGTTATGATATATGT+TGG - chr6.3:8638187-8638206 MS.gene86088:intron 20.0%
!!! TAATATATTTGGTAATTGGT+GGG - chr6.3:8641794-8641813 MS.gene86088:intron 20.0%
!!! TATGTTTTTCTTTTTGTTCT+TGG - chr6.3:8638133-8638152 MS.gene86088:CDS 20.0%
!!! TCTATTTCTCCAATTATTAT+TGG + chr6.3:8639823-8639842 None:intergenic 20.0%
!!! TGATAGTTATCTTTAAAAAG+CGG - chr6.3:8640014-8640033 MS.gene86088:CDS 20.0%
!!! TTAATATATTTGGTAATTGG+TGG - chr6.3:8641793-8641812 MS.gene86088:intron 20.0%
!!! TTGAAATAATAACACGTTTT+AGG - chr6.3:8639650-8639669 MS.gene86088:CDS 20.0%
!!! TTGAATCTTGAATTATTTTG+AGG - chr6.3:8638696-8638715 MS.gene86088:CDS 20.0%
! AAAAACAAGGAACCAATAAA+CGG + chr6.3:8639163-8639182 None:intergenic 25.0%
! AAAAACATAAGAGGATGAAA+AGG + chr6.3:8638122-8638141 None:intergenic 25.0%
! ATATGTTGGTCATTTGTATT+TGG - chr6.3:8638201-8638220 MS.gene86088:intron 25.0%
! ATCAGATACTCAATTCTTAT+TGG + chr6.3:8639998-8640017 None:intergenic 25.0%
! ATCCTAACTTACAAATAACA+TGG + chr6.3:8638448-8638467 None:intergenic 25.0%
! ATTTGAATAATTGACGTACT+TGG + chr6.3:8642335-8642354 None:intergenic 25.0%
! CAAAAACATAATTTGAAGGT+CGG + chr6.3:8642045-8642064 None:intergenic 25.0%
! GACATAGGAAAATTATTAGT+TGG + chr6.3:8638737-8638756 None:intergenic 25.0%
! GATTAAATGATATTGGATTG+AGG + chr6.3:8641674-8641693 None:intergenic 25.0%
! TACTTAAGATCCTAAAATGA+AGG + chr6.3:8638385-8638404 None:intergenic 25.0%
! TAGATATGAAAAGGGATTAA+TGG + chr6.3:8640119-8640138 None:intergenic 25.0%
! TAGTCACTGATAAACAATAT+TGG - chr6.3:8641114-8641133 MS.gene86088:intron 25.0%
! TGAAAATGTCGTATCTATAT+TGG - chr6.3:8638770-8638789 MS.gene86088:CDS 25.0%
! TGGATCAAAAGTTATGTTAA+TGG - chr6.3:8638285-8638304 MS.gene86088:intron 25.0%
! TGTCATATCTAATTCACAAT+TGG - chr6.3:8638820-8638839 MS.gene86088:CDS 25.0%
! TTAAAAAGCGGTTATAATCT+AGG - chr6.3:8640026-8640045 MS.gene86088:CDS 25.0%
!! AAGTTGGTTAATCAAAACTT+TGG + chr6.3:8639305-8639324 None:intergenic 25.0%
!! ACATGGAAAACTATATTTTC+AGG + chr6.3:8640522-8640541 None:intergenic 25.0%
!! ATCCATGTTATTTGTAAGTT+AGG - chr6.3:8638443-8638462 MS.gene86088:intron 25.0%
!! CATTCAAAATTTTACGGTTT+TGG - chr6.3:8641693-8641712 MS.gene86088:intron 25.0%
!! TCGGTTATCAATATAAGTTT+TGG - chr6.3:8639007-8639026 MS.gene86088:intron 25.0%
!! TTGAACATCTTAAACCATTT+TGG - chr6.3:8642308-8642327 MS.gene86088:CDS 25.0%
!! TTTGGATATGAATCTCATTT+TGG - chr6.3:8638526-8638545 MS.gene86088:intron 25.0%
!!! AAGTGTTGAAAATGTGAAAA+TGG - chr6.3:8642234-8642253 MS.gene86088:CDS 25.0%
!!! ATTATTTTGAGGTTCACATA+TGG - chr6.3:8638707-8638726 MS.gene86088:CDS 25.0%
!!! ATTTTCCTATGTCATTGATT+TGG - chr6.3:8638744-8638763 MS.gene86088:CDS 25.0%
!!! TCATTTTAGGATCTTAAGTA+TGG - chr6.3:8638385-8638404 MS.gene86088:intron 25.0%
!!! TTTCTAGTGTGTTTCTATTT+TGG - chr6.3:8638508-8638527 MS.gene86088:intron 25.0%
AAAGATATGAGCATTCTATG+AGG + chr6.3:8639912-8639931 None:intergenic 30.0%
AACATTCGCTTTCATGTTAA+AGG - chr6.3:8639493-8639512 MS.gene86088:CDS 30.0%
AAGTGTTCATGTGTCAAAAT+GGG + chr6.3:8641265-8641284 None:intergenic 30.0%
AAGTTTCAATATTCAGAGAG+AGG + chr6.3:8640897-8640916 None:intergenic 30.0%
AATCTGGAGACAAAAAAACA+AGG + chr6.3:8639176-8639195 None:intergenic 30.0%
AATTTCGATGCAAATTTACG+CGG + chr6.3:8640756-8640775 None:intergenic 30.0%
ACATTCGCTTTCATGTTAAA+GGG - chr6.3:8639494-8639513 MS.gene86088:CDS 30.0%
ACCAGATTCATTTGATCAAA+TGG - chr6.3:8639436-8639455 MS.gene86088:intron 30.0%
ACCATTTGATCAAATGAATC+TGG + chr6.3:8639440-8639459 None:intergenic 30.0%
ACTGACATAGACATAAACAT+AGG - chr6.3:8641836-8641855 MS.gene86088:intron 30.0%
AGAGACAATTAATCCCTTTA+GGG + chr6.3:8640326-8640345 None:intergenic 30.0%
AGAGTGATCCATAAAAGTAA+TGG + chr6.3:8639740-8639759 None:intergenic 30.0%
ATACAACAAAACATTGATGC+CGG + chr6.3:8641772-8641791 None:intergenic 30.0%
ATTGCATGTATGCAATATTG+AGG - chr6.3:8639777-8639796 MS.gene86088:CDS 30.0%
CAGTTGACAAAATAAAATGG+TGG + chr6.3:8640443-8640462 None:intergenic 30.0%
GATCTGAAAGGTAAAGTTAA+TGG - chr6.3:8641432-8641451 MS.gene86088:intron 30.0%
GATGAGGATAGTATGAAAAA+GGG + chr6.3:8638015-8638034 None:intergenic 30.0%
GGTAAAAAGGATAAGAACAA+AGG + chr6.3:8642024-8642043 None:intergenic 30.0%
GTTAACTAGAGAAAATGTTC+CGG - chr6.3:8640644-8640663 MS.gene86088:intron 30.0%
TAATTTGAAGGTCGGTAAAA+AGG + chr6.3:8642037-8642056 None:intergenic 30.0%
TAGAAAGTCAAAATGGAATC+AGG - chr6.3:8640679-8640698 MS.gene86088:intron 30.0%
TATATATTCCTGAGGTAAGT+TGG - chr6.3:8640823-8640842 MS.gene86088:CDS 30.0%
TGATATTAATGCTTCTGTAC+CGG - chr6.3:8641750-8641769 MS.gene86088:intron 30.0%
TTACCTCAGGAATATATATG+CGG + chr6.3:8640821-8640840 None:intergenic 30.0%
TTCGTTATGTTACTCCTATT+TGG - chr6.3:8639082-8639101 MS.gene86088:intron 30.0%
TTGAGTAGAGATATGTACTT+TGG + chr6.3:8640792-8640811 None:intergenic 30.0%
TTTGTCAACTGATAACATCT+TGG - chr6.3:8640452-8640471 MS.gene86088:intron 30.0%
! ATTTTATACCTCTTTAAGCC+AGG + chr6.3:8641643-8641662 None:intergenic 30.0%
! GATCTAAGACTGTAGAAAAT+GGG - chr6.3:8641184-8641203 MS.gene86088:intron 30.0%
! GGGTAATGTCAAAACATTTT+AGG - chr6.3:8641487-8641506 MS.gene86088:intron 30.0%
! GTGAAGATTTCCTTCATTTT+AGG - chr6.3:8638372-8638391 MS.gene86088:intron 30.0%
! TAACATGAAAGCGAATGTTT+TGG + chr6.3:8639492-8639511 None:intergenic 30.0%
! TACTTTTATGGATCACTCTT+TGG - chr6.3:8639741-8639760 MS.gene86088:CDS 30.0%
! TGATCTAAGACTGTAGAAAA+TGG - chr6.3:8641183-8641202 MS.gene86088:intron 30.0%
! TGTGCTTTACAATTTAGAAC+TGG - chr6.3:8638960-8638979 MS.gene86088:intron 30.0%
! TTTTTGTCTCCAGATTGTTT+AGG - chr6.3:8639180-8639199 MS.gene86088:intron 30.0%
!! AAGAAGCATTCAGATAAAGT+TGG + chr6.3:8639321-8639340 None:intergenic 30.0%
!! TATTGACTTGATGAAGATCA+AGG - chr6.3:8637962-8637981 MS.gene86088:CDS 30.0%
AAAGGAAACTGAAGTCACAT+AGG + chr6.3:8642006-8642025 None:intergenic 35.0%
AATTCACAATTGGAATGCTC+CGG - chr6.3:8638830-8638849 MS.gene86088:CDS 35.0%
ACTTGAAATGTACCAACATG+TGG - chr6.3:8640968-8640987 MS.gene86088:intron 35.0%
ATACTCAACGAAGTGAAAAC+CGG - chr6.3:8639389-8639408 MS.gene86088:intron 35.0%
ATATCATTCCTGGCTTAAAG+AGG - chr6.3:8641632-8641651 MS.gene86088:intron 35.0%
ATCACGATATCAAGCAACAA+TGG - chr6.3:8637936-8637955 MS.gene86088:CDS 35.0%
ATTAATGGTTATGCACAGAC+GGG + chr6.3:8640104-8640123 None:intergenic 35.0%
ATTGAATGTGACCAAGTTGT+CGG - chr6.3:8639846-8639865 MS.gene86088:CDS 35.0%
CAAAAGGCAACAAAAAAGCA+AGG + chr6.3:8638037-8638056 None:intergenic 35.0%
CAAATTTCTCCATCTGTTCA+AGG + chr6.3:8640239-8640258 None:intergenic 35.0%
CAACTCCAAATCAATGACAT+AGG + chr6.3:8638752-8638771 None:intergenic 35.0%
CAATATTCAGAGAGAGGAAA+CGG + chr6.3:8640891-8640910 None:intergenic 35.0%
CACCTAGAAAACTTCCATAA+TGG + chr6.3:8638355-8638374 None:intergenic 35.0%
CCATAATGGCATAATCACAA+GGG + chr6.3:8638341-8638360 None:intergenic 35.0%
GAAGCTGTAGAAAGTCAAAA+TGG - chr6.3:8640672-8640691 MS.gene86088:intron 35.0%
GAATCAGGAATTACTACCAT+GGG - chr6.3:8640694-8640713 MS.gene86088:intron 35.0%
GACACGACACCAATAATAAT+TGG - chr6.3:8639811-8639830 MS.gene86088:CDS 35.0%
GAGAGACAATTAATCCCTTT+AGG + chr6.3:8640327-8640346 None:intergenic 35.0%
GATTAATGGTTATGCACAGA+CGG + chr6.3:8640105-8640124 None:intergenic 35.0%
GCTGCTGTTATTCATTACAA+TGG - chr6.3:8642256-8642275 MS.gene86088:CDS 35.0%
GGATGAGGATAGTATGAAAA+AGG + chr6.3:8638016-8638035 None:intergenic 35.0%
GTCTACTTCTAACCGTTTAT+TGG - chr6.3:8639148-8639167 MS.gene86088:intron 35.0%
TACCATGGGAATCATATGAT+GGG - chr6.3:8640708-8640727 MS.gene86088:intron 35.0%
TATCCGCATATATATTCCTG+AGG - chr6.3:8640815-8640834 MS.gene86088:CDS 35.0%
TCAAAACCAATCTCTAACCA+GGG + chr6.3:8642292-8642311 None:intergenic 35.0%
TCACGATATCAAGCAACAAT+GGG - chr6.3:8637937-8637956 MS.gene86088:CDS 35.0%
TCCATAATGGCATAATCACA+AGG + chr6.3:8638342-8638361 None:intergenic 35.0%
TGTAACTACATGTGTCATGT+CGG - chr6.3:8641915-8641934 MS.gene86088:intron 35.0%
TGTTAGGAACTGTCATATCA+TGG - chr6.3:8642360-8642379 MS.gene86088:CDS 35.0%
TTAGAGAGACATATCATTCC+TGG - chr6.3:8641622-8641641 MS.gene86088:intron 35.0%
TTCAAAACCAATCTCTAACC+AGG + chr6.3:8642293-8642312 None:intergenic 35.0%
TTCTCCATATACAAGAGTCA+GGG + chr6.3:8641049-8641068 None:intergenic 35.0%
TTTCTCCATATACAAGAGTC+AGG + chr6.3:8641050-8641069 None:intergenic 35.0%
! AAAATGGTGGAAAGAGTTGT+CGG + chr6.3:8640430-8640449 None:intergenic 35.0%
! ACAATTAATCCCTTTAGGGA+CGG + chr6.3:8640322-8640341 None:intergenic 35.0%
! GAAGTGTTCATGTGTCAAAA+TGG + chr6.3:8641266-8641285 None:intergenic 35.0%
! TGCCATTATGGAAGTTTTCT+AGG - chr6.3:8638350-8638369 MS.gene86088:intron 35.0%
! TTCGGTTCTTGTATTGATAG+TGG - chr6.3:8640169-8640188 MS.gene86088:intron 35.0%
! TTTAGAACTGGAAAACAAGC+CGG - chr6.3:8638972-8638991 MS.gene86088:intron 35.0%
!! ATGAAAAGGAGTACCAAAAG+AGG + chr6.3:8638108-8638127 None:intergenic 35.0%
!! ATTATTATTGGTGTCGTGTC+CGG + chr6.3:8639811-8639830 None:intergenic 35.0%
!! TATGGATCACTCTTTGGAAT+TGG - chr6.3:8639747-8639766 MS.gene86088:CDS 35.0%
!! TCTGGTAGCTTTAAACTAGA+TGG + chr6.3:8639422-8639441 None:intergenic 35.0%
!!! TTTTTTGGATGACGATGTAG+TGG - chr6.3:8641377-8641396 MS.gene86088:intron 35.0%
!!! TTTTTTTGTCGGTGATGACA+TGG + chr6.3:8640539-8640558 None:intergenic 35.0%
AAAACCACCTTGTCAAGGTT+TGG + chr6.3:8641360-8641379 None:intergenic 40.0%
AAACCACCTTGTCAAGGTTT+GGG + chr6.3:8641359-8641378 None:intergenic 40.0%
AACATGACAATGTGGAAGCT+CGG - chr6.3:8642118-8642137 MS.gene86088:intron 40.0%
AACCGTCTACCTAAACAATC+TGG + chr6.3:8639192-8639211 None:intergenic 40.0%
ACCGACAAAAAAACTTACGC+GGG - chr6.3:8640546-8640565 MS.gene86088:intron 40.0%
ACTTCAACAATAGCAGGTGA+GGG + chr6.3:8640600-8640619 None:intergenic 40.0%
AGGTAAAGTTAATGGAGCTG+TGG - chr6.3:8641440-8641459 MS.gene86088:intron 40.0%
AGGTTTCAGAGACGATTGTA+CGG + chr6.3:8640502-8640521 None:intergenic 40.0%
ATGTCTTTGATCTTCGTGCA+TGG - chr6.3:8641586-8641605 MS.gene86088:intron 40.0%
CACCGACAAAAAAACTTACG+CGG - chr6.3:8640545-8640564 MS.gene86088:intron 40.0%
CCAAAAAAACCACCTTGTCA+AGG + chr6.3:8641365-8641384 None:intergenic 40.0%
CCCTTGTGATTATGCCATTA+TGG - chr6.3:8638338-8638357 MS.gene86088:intron 40.0%
CCTCTAAATGCAATCAAAGC+TGG + chr6.3:8642154-8642173 None:intergenic 40.0%
CCTGCTATTGTTGAAGTCAA+AGG - chr6.3:8640603-8640622 MS.gene86088:intron 40.0%
CGCTTTCATGTTAAAGGGAA+TGG - chr6.3:8639499-8639518 MS.gene86088:CDS 40.0%
CTAAATGCAATCAAAGCTGG+AGG + chr6.3:8642151-8642170 None:intergenic 40.0%
CTACCATGGGAATCATATGA+TGG - chr6.3:8640707-8640726 MS.gene86088:intron 40.0%
CTATGGGAAATGGATCTGAA+AGG - chr6.3:8641420-8641439 MS.gene86088:intron 40.0%
CTCCAGATTGTTTAGGTAGA+CGG - chr6.3:8639187-8639206 MS.gene86088:intron 40.0%
CTGAATGCTTCTTGTGATGA+TGG - chr6.3:8639328-8639347 MS.gene86088:intron 40.0%
CTTTCTACAGCTTCAAGTAC+CGG + chr6.3:8640666-8640685 None:intergenic 40.0%
GAAATGTACCAACATGTGGT+TGG - chr6.3:8640972-8640991 MS.gene86088:intron 40.0%
GATTGTTTAGGTAGACGGTT+AGG - chr6.3:8639192-8639211 MS.gene86088:intron 40.0%
GCAACAAAAAAGCAAGGATG+AGG + chr6.3:8638031-8638050 None:intergenic 40.0%
GCAGTGAGAATGAAGACAAA+AGG + chr6.3:8638053-8638072 None:intergenic 40.0%
GGAATCAGGAATTACTACCA+TGG - chr6.3:8640693-8640712 MS.gene86088:intron 40.0%
GTATCAATGCTCCAGATTGA+AGG + chr6.3:8639890-8639909 None:intergenic 40.0%
GTCCAAATGCTTTGCAATGA+GGG + chr6.3:8641535-8641554 None:intergenic 40.0%
GTTATGCTTCCTTGAACAGA+TGG - chr6.3:8640227-8640246 MS.gene86088:intron 40.0%
TAAACTAGATGGAACTTCCC+CGG + chr6.3:8639411-8639430 None:intergenic 40.0%
TAACCGACAACAACAGAAAC+CGG + chr6.3:8638994-8639013 None:intergenic 40.0%
TACTCAACGAAGTGAAAACC+GGG - chr6.3:8639390-8639409 MS.gene86088:intron 40.0%
TCAAAACCCTGGTTAGAGAT+TGG - chr6.3:8642283-8642302 MS.gene86088:CDS 40.0%
TCCAAATGCTTTGCAATGAG+GGG + chr6.3:8641534-8641553 None:intergenic 40.0%
TGAGGTCAAACATGACAATG+TGG - chr6.3:8642110-8642129 MS.gene86088:intron 40.0%
TGATCCCTGACTCTTGTATA+TGG - chr6.3:8641042-8641061 MS.gene86088:intron 40.0%
TGATGAATCCAACTTACCTC+AGG + chr6.3:8640834-8640853 None:intergenic 40.0%
TTCAGATCCATTTCCCATAG+TGG + chr6.3:8641420-8641439 None:intergenic 40.0%
TTCATCCAATTGACCCTTCT+TGG - chr6.3:8642179-8642198 MS.gene86088:intron 40.0%
TTCCCATCATATGATTCCCA+TGG + chr6.3:8640713-8640732 None:intergenic 40.0%
TTGACGTACTTGGTCCAAAA+TGG + chr6.3:8642325-8642344 None:intergenic 40.0%
! AACACTTGTTGACACCTTCA+AGG + chr6.3:8638085-8638104 None:intergenic 40.0%
! AAGGCATTCATCAGTTTGAC+TGG - chr6.3:8640622-8640641 MS.gene86088:intron 40.0%
! ACACTTGTTGACACCTTCAA+GGG + chr6.3:8638084-8638103 None:intergenic 40.0%
! CCAGCTTTGATTGCATTTAG+AGG - chr6.3:8642151-8642170 MS.gene86088:intron 40.0%
! CCTTTGACTTCAACAATAGC+AGG + chr6.3:8640606-8640625 None:intergenic 40.0%
! GTCAACAAGTGTTCCTCTTT+TGG - chr6.3:8638092-8638111 MS.gene86088:CDS 40.0%
! TATTTTCGCCATGAGTGATC+CGG + chr6.3:8638852-8638871 None:intergenic 40.0%
! TGATAGCTTGTCGTTGTGTA+TGG - chr6.3:8642080-8642099 MS.gene86088:intron 40.0%
!! TCTCTAACCAGGGTTTTGAT+TGG + chr6.3:8642282-8642301 None:intergenic 40.0%
!! TGTGTTGATTCTTTCGTGTG+AGG - chr6.3:8638923-8638942 MS.gene86088:CDS 40.0%
!!! ACCCGCGTAAGTTTTTTTGT+CGG + chr6.3:8640550-8640569 None:intergenic 40.0%
!!! CCTTGACAAGGTGGTTTTTT+TGG - chr6.3:8641362-8641381 MS.gene86088:intron 40.0%
AAACCAAGCATGTGCCAAGA+AGG + chr6.3:8642196-8642215 None:intergenic 45.0%
AACCAAGCATGTGCCAAGAA+GGG + chr6.3:8642195-8642214 None:intergenic 45.0%
AAGAAAGACACAACCACGTG+AGG + chr6.3:8639063-8639082 None:intergenic 45.0%
AATCACCTTGTGTGCGCAAT+GGG - chr6.3:8641076-8641095 MS.gene86088:CDS 45.0%
AATGCTTTGCAATGAGGGGA+TGG + chr6.3:8641530-8641549 None:intergenic 45.0%
ACAATGGCCAATCAAAACCC+TGG - chr6.3:8642272-8642291 MS.gene86088:CDS 45.0%
ACTCAACGAAGTGAAAACCG+GGG - chr6.3:8639391-8639410 MS.gene86088:intron 45.0%
ACTGCTGTTGTTACCCTTGA+AGG - chr6.3:8638068-8638087 MS.gene86088:CDS 45.0%
AGGACCAAGGTTTCTTGGAA+GGG - chr6.3:8639212-8639231 MS.gene86088:intron 45.0%
AGTATTCATCCGTCAAACGC+AGG + chr6.3:8640350-8640369 None:intergenic 45.0%
ATCGTGATGCTTCTCATGCT+AGG + chr6.3:8637924-8637943 None:intergenic 45.0%
ATGCAATCAAAGCTGGAGGT+AGG + chr6.3:8642147-8642166 None:intergenic 45.0%
ATGCTTTGCAATGAGGGGAT+GGG + chr6.3:8641529-8641548 None:intergenic 45.0%
ATGTGCCAAGAAGGGTCAAT+TGG + chr6.3:8642187-8642206 None:intergenic 45.0%
CACTTAGACCAACCACATGT+TGG + chr6.3:8640983-8641002 None:intergenic 45.0%
CTTGTCTCCACTATGGGAAA+TGG - chr6.3:8641410-8641429 MS.gene86088:intron 45.0%
GACTTCAACAATAGCAGGTG+AGG + chr6.3:8640601-8640620 None:intergenic 45.0%
GCTTTACCCAAACCTTGACA+AGG - chr6.3:8641350-8641369 MS.gene86088:intron 45.0%
GGTCCAAATGCTTTGCAATG+AGG + chr6.3:8641536-8641555 None:intergenic 45.0%
GTATTCATCCGTCAAACGCA+GGG + chr6.3:8640349-8640368 None:intergenic 45.0%
GTTGTGTATGGCAGAATCTG+AGG - chr6.3:8642092-8642111 MS.gene86088:intron 45.0%
TACATGTGTCATGTCGGTGT+CGG - chr6.3:8641921-8641940 MS.gene86088:intron 45.0%
TAGGACCAAGGTTTCTTGGA+AGG - chr6.3:8639211-8639230 MS.gene86088:intron 45.0%
TCAACCCTTCCAAGAAACCT+TGG + chr6.3:8639219-8639238 None:intergenic 45.0%
TCTTGGCACATGCTTGGTTT+AGG - chr6.3:8642196-8642215 MS.gene86088:CDS 45.0%
TGCAATCAAAGCTGGAGGTA+GGG + chr6.3:8642146-8642165 None:intergenic 45.0%
TTACCCAAACCTTGACAAGG+TGG - chr6.3:8641353-8641372 MS.gene86088:intron 45.0%
TTTCGAAATGTTGCCTCACG+TGG - chr6.3:8639047-8639066 MS.gene86088:intron 45.0%
! AAAGAGTTGTCGGAGAGCAT+TGG + chr6.3:8640420-8640439 None:intergenic 45.0%
! AACACCTGACCACTAGCTTA+AGG + chr6.3:8641022-8641041 None:intergenic 45.0%
! AAGCCGGTTTCTGTTGTTGT+CGG - chr6.3:8638988-8639007 MS.gene86088:intron 45.0%
! AGAGAGAGGAAACGGACTTA+TGG + chr6.3:8640883-8640902 None:intergenic 45.0%
! GCACTGACACTTCACATTGA+AGG + chr6.3:8641964-8641983 None:intergenic 45.0%
! GTGAAGTGTCAGTGCTACAT+AGG - chr6.3:8641969-8641988 MS.gene86088:intron 45.0%
! TCCCCTCATTGCAAAGCATT+TGG - chr6.3:8641530-8641549 MS.gene86088:intron 45.0%
!! ACTTCACATTGAAGGCGTTC+TGG + chr6.3:8641956-8641975 None:intergenic 45.0%
!! CAACATGTGGTTGGTCTAAG+TGG - chr6.3:8640981-8641000 MS.gene86088:intron 45.0%
!! GACATGCTACTGACTTGTAG+AGG - chr6.3:8641858-8641877 MS.gene86088:intron 45.0%
!! GAGAGCATTGGTAGTAACTC+CGG + chr6.3:8640408-8640427 None:intergenic 45.0%
!! GTGGTTGGTCTAAGTGGTAA+GGG - chr6.3:8640987-8641006 MS.gene86088:intron 45.0%
!! TGTGGTTGGTCTAAGTGGTA+AGG - chr6.3:8640986-8641005 MS.gene86088:intron 45.0%
ACGCAAACAATTGCCTCCTC+CGG - chr6.3:8640386-8640405 MS.gene86088:intron 50.0%
ACTCGGTCACCTTAAGCTAG+TGG - chr6.3:8641010-8641029 MS.gene86088:intron 50.0%
ATCACCTTGTGTGCGCAATG+GGG - chr6.3:8641077-8641096 MS.gene86088:CDS 50.0%
CAATATTGAGGCACAGACGC+CGG - chr6.3:8639789-8639808 MS.gene86088:CDS 50.0%
CAGAGACGATTGTACGGTAG+AGG + chr6.3:8640496-8640515 None:intergenic 50.0%
CAGCTAGTTCCGTCCCTAAA+GGG - chr6.3:8640310-8640329 MS.gene86088:intron 50.0%
CGATGCAAATTTACGCGGAC+TGG + chr6.3:8640751-8640770 None:intergenic 50.0%
CGGTTAGGACCAAGGTTTCT+TGG - chr6.3:8639207-8639226 MS.gene86088:intron 50.0%
CTGCAGAGGCGAAGATGAAT+GGG - chr6.3:8641467-8641486 MS.gene86088:intron 50.0%
GAATCACCTTGTGTGCGCAA+TGG - chr6.3:8641075-8641094 MS.gene86088:CDS 50.0%
GGTCTAAGTGGTAAGGGACT+CGG - chr6.3:8640993-8641012 MS.gene86088:intron 50.0%
GTCACCTTAAGCTAGTGGTC+AGG - chr6.3:8641015-8641034 MS.gene86088:intron 50.0%
TAGGTAGACGGTTAGGACCA+AGG - chr6.3:8639199-8639218 MS.gene86088:intron 50.0%
TCAACAATAGCAGGTGAGGG+AGG + chr6.3:8640597-8640616 None:intergenic 50.0%
TGGAAGGGTTGACGATTCAG+CGG - chr6.3:8639227-8639246 MS.gene86088:intron 50.0%
TGTGACCAAGTTGTCGGTGT+CGG - chr6.3:8639852-8639871 MS.gene86088:CDS 50.0%
TTGTCTCTCCCTGCGTTTGA+CGG - chr6.3:8640338-8640357 MS.gene86088:intron 50.0%
! AGCGTGACTTGTCTCCACTA+TGG - chr6.3:8641403-8641422 MS.gene86088:intron 50.0%
! ATTGGTAGTAACTCCGGAGG+AGG + chr6.3:8640402-8640421 None:intergenic 50.0%
! GCGTGACTTGTCTCCACTAT+GGG - chr6.3:8641404-8641423 MS.gene86088:intron 50.0%
!! AGCATTGGTAGTAACTCCGG+AGG + chr6.3:8640405-8640424 None:intergenic 50.0%
!! CGGACTGGTATCACTGAGAT+TGG + chr6.3:8640736-8640755 None:intergenic 50.0%
AAGCCCAAGCACACTCGTCA+GGG + chr6.3:8641557-8641576 None:intergenic 55.0%
ACGAGTGTGCTTGGGCTTAC+GGG - chr6.3:8641559-8641578 MS.gene86088:intron 55.0%
CACCTGACACGCCTTCAATC+TGG - chr6.3:8639876-8639895 MS.gene86088:CDS 55.0%
CCATTCATCTTCGCCTCTGC+AGG + chr6.3:8641469-8641488 None:intergenic 55.0%
CCTGCAGAGGCGAAGATGAA+TGG - chr6.3:8641466-8641485 MS.gene86088:intron 55.0%
CTTACGCGGGTATGCACTCT+TGG - chr6.3:8640559-8640578 MS.gene86088:intron 55.0%
GACCCTTCTTGGCACATGCT+TGG - chr6.3:8642190-8642209 MS.gene86088:CDS 55.0%
GACGAGTGTGCTTGGGCTTA+CGG - chr6.3:8641558-8641577 MS.gene86088:intron 55.0%
GCAGCTAGTTCCGTCCCTAA+AGG - chr6.3:8640309-8640328 MS.gene86088:intron 55.0%
GGAATGCTCCGGATCACTCA+TGG - chr6.3:8638841-8638860 MS.gene86088:CDS 55.0%
TAAGCCCAAGCACACTCGTC+AGG + chr6.3:8641558-8641577 None:intergenic 55.0%
! CTCCAGATTGAAGGCGTGTC+AGG + chr6.3:8639881-8639900 None:intergenic 55.0%
CGAACCCCATTGCGCACACA+AGG + chr6.3:8641084-8641103 None:intergenic 60.0%
GGACCCTGACGAGTGTGCTT+GGG - chr6.3:8641551-8641570 MS.gene86088:intron 60.0%
GGAGCTGTGGAAACCTGCAG+AGG - chr6.3:8641453-8641472 MS.gene86088:intron 60.0%
GGTGTCCGACACCGACAACT+TGG + chr6.3:8639860-8639879 None:intergenic 60.0%
TGGACCCTGACGAGTGTGCT+TGG - chr6.3:8641550-8641569 MS.gene86088:intron 60.0%
GTGCGCAATGGGGTTCGCGT+CGG - chr6.3:8641087-8641106 MS.gene86088:intron 65.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 8637903 8642390 8637903 ID=MS.gene86088
chr6.3 mRNA 8637903 8642390 8637903 ID=MS.gene86088.t1;Parent=MS.gene86088
chr6.3 exon 8642180 8642390 8642180 ID=MS.gene86088.t1.exon1;Parent=MS.gene86088.t1
chr6.3 CDS 8642180 8642390 8642180 ID=cds.MS.gene86088.t1;Parent=MS.gene86088.t1
chr6.3 exon 8641045 8641100 8641045 ID=MS.gene86088.t1.exon2;Parent=MS.gene86088.t1
chr6.3 CDS 8641045 8641100 8641045 ID=cds.MS.gene86088.t1;Parent=MS.gene86088.t1
chr6.3 exon 8640773 8640928 8640773 ID=MS.gene86088.t1.exon3;Parent=MS.gene86088.t1
chr6.3 CDS 8640773 8640928 8640773 ID=cds.MS.gene86088.t1;Parent=MS.gene86088.t1
chr6.3 exon 8639457 8640047 8639457 ID=MS.gene86088.t1.exon4;Parent=MS.gene86088.t1
chr6.3 CDS 8639457 8640047 8639457 ID=cds.MS.gene86088.t1;Parent=MS.gene86088.t1
chr6.3 exon 8638640 8638942 8638640 ID=MS.gene86088.t1.exon5;Parent=MS.gene86088.t1
chr6.3 CDS 8638640 8638942 8638640 ID=cds.MS.gene86088.t1;Parent=MS.gene86088.t1
chr6.3 exon 8637903 8638187 8637903 ID=MS.gene86088.t1.exon6;Parent=MS.gene86088.t1
chr6.3 CDS 8637903 8638187 8637903 ID=cds.MS.gene86088.t1;Parent=MS.gene86088.t1
Gene Sequence

>MS.gene86088

ATGCAGCTTCAGTTCTCGCCTAGCATGAGAAGCATCACGATATCAAGCAACAATGGGTTTATTGACTTGATGAAGATCAAGGTCGCAGCTTGTCACATTTCTTATAGAACCCTTTTTCATACTATCCTCATCCTTGCTTTTTTGTTGCCTTTTGTCTTCATTCTCACTGCTGTTGTTACCCTTGAAGGTGTCAACAAGTGTTCCTCTTTTGGTACTCCTTTTCATCCTCTTATGTTTTTCTTTTTGTTCTTGGTTTTGTTGTTATGATATATGTCATTTCTATTGTTTTTGTTATGATATATGTTGGTCATTTGTATTTGGATTTTTGTATTGATATGTGTTTGTTTGTTTTAAGATAGATCTTGATTTGAAATTTGAATATTGGATCAAAAGTTATGTTAATGGAATTATTTGAGATGAAACATGAATTTGTTTCCCTTGTGATTATGCCATTATGGAAGTTTTCTAGGTGAAGATTTCCTTCATTTTAGGATCTTAAGTATGGTATGATGTTTTAAGCATTTTATTTGAATGATATGAATCCATGTTATTTGTAAGTTAGGATGCATACGAGTTGATATAAAACTAAATTCAATTGATATGAATTTCTAGTGTGTTTCTATTTTGGATATGAATCTCATTTTGGATCATGATTCGTTATGTTGAATCTTGATTCACTAAGATGAATCATGATTCATTCTAATGAATAACTATTTAAGTTTAGTGTAGTCAGACACTTTTTTTCTCAACATTGTATTGCTAGCTACTTTTCGTTTGTGATTTGATTTATGACTTGAATCTTGAATTATTTTGAGGTTCACATATGGCATGCCAACTAATAATTTTCCTATGTCATTGATTTGGAGTTGAAAATGTCGTATCTATATTGGTAATGTATCTTACAATTCAGAATATAATGTCATATCTAATTCACAATTGGAATGCTCCGGATCACTCATGGCGAAAATAATGATGATGATTATGTTTTCTTGCAATGTGTTGCTGAATTTTGTATCGTGTTGTGTTGATTCTTTCGTGTGAGGAATCAAATTTGAAGTGTGCTTTACAATTTAGAACTGGAAAACAAGCCGGTTTCTGTTGTTGTCGGTTATCAATATAAGTTTTGGTTTATCGATTTCTAGCATTTCGAAATGTTGCCTCACGTGGTTGTGTCTTTCTTTCGTTATGTTACTCCTATTTGGTTCTAAAAGTTAATTGTTGTGCACAATTTGTGTCTCGTCTTTTGTCTACTTCTAACCGTTTATTGGTTCCTTGTTTTTTTGTCTCCAGATTGTTTAGGTAGACGGTTAGGACCAAGGTTTCTTGGAAGGGTTGACGATTCAGCGGTAAATTCTTTTTTATATTAAAATAGATTTTTCTGAATAGATAATCATATCAACCAAAGTTTTGATTAACCAACTTTATCTGAATGCTTCTTGTGATGATGGTAATGCTAATGCAGAGATTAGTTAGAGATTTTTACAACATACTCAACGAAGTGAAAACCGGGGAAGTTCCATCTAGTTTAAAGCTACCAGATTCATTTGATCAAATGGTTTCTGATATGAAGAACAATCAATATGATGCCAAAACATTCGCTTTCATGTTAAAGGGAATGGTAAGTTGCATTTAATGTTAATATTAGTTGTCGTATTTTTCTTGATGAATTAGTATTAATTCGTGAAAGGGTTGTCTGCAATGAATTCTGTTGATGTTTTCGAATCTTATAAGTTATCTAACACATAGATTGAAATAATAACACGTTTTAGGCACTTTTTGTCTCTGAAATTTGAATATTAGATATTTTAAGATCATCATTATATCTGATAGATAACCATTACTTTTATGGATCACTCTTTGGAATTGGAGAAACAATTGCATGTATGCAATATTGAGGCACAGACGCCGGACACGACACCAATAATAATTGGAGAAATAGAATAATTGAATGTGACCAAGTTGTCGGTGTCGGACACCTGACACGCCTTCAATCTGGAGCATTGATACCTCATAGAATGCTCATATCTTTTATTATTATTTTATGAGAAAATGGGACATTCATTGTTAGTGTAAACTAGTTTTATACTGTCGTCCAATAAGAATTGAGTATCTGATAGTTATCTTTAAAAAGCGGTTATAATCTAGGCTTAGATAGCAACGTGATAAACTTTTATTAGATGACGGTTAAAACTATTTTACCCGTCTGTGCATAACCATTAATCCCTTTTCATATCTAATAGTTAGTCACATTAATCATAACAGAATTTTCGGTTCTTGTATTGATAGTGGTAGCAAATGAGAATTATATTGATCTTTGTTATGATGTTATGCTTCCTTGAACAGATGGAGAAATTTGAGAACGAAATCAGAGAATCTAAATTTGCAGAGCTGATGAATAAACACTTTGCAGCTAGTTCCGTCCCTAAAGGGATTAATTGTCTCTCCCTGCGTTTGACGGATGAATACTCGTCAAATGCGCATGCACGCAAACAATTGCCTCCTCCGGAGTTACTACCAATGCTCTCCGACAACTCTTTCCACCATTTTATTTTGTCAACTGATAACATCTTGGCTGCTTCAGTCGTTGTTACCTCTACCGTACAATCGTCTCTGAAACCTGAAAATATAGTTTTCCATGTCATCACCGACAAAAAAACTTACGCGGGTATGCACTCTTGGTTTGCACTAAATCCTCCCTCACCTGCTATTGTTGAAGTCAAAGGCATTCATCAGTTTGACTGGTTAACTAGAGAAAATGTTCCGGTACTTGAAGCTGTAGAAAGTCAAAATGGAATCAGGAATTACTACCATGGGAATCATATGATGGGAACCAATCTCAGTGATACCAGTCCGCGTAAATTTGCATCGAAATTGCAGTCGAGAAGTCCAAAGTACATATCTCTACTCAATCATATCCGCATATATATTCCTGAGGTAAGTTGGATTCATCAACGTTCACTCTTTCTGTATTGCTTCTCCATAAGTCCGTTTCCTCTCTCTGAATATTGAAACTTTTCAAATCATAATATTTATGTTTTTGATAATATCTTTACTTATTTAATGAAACTTGAAATGTACCAACATGTGGTTGGTCTAAGTGGTAAGGGACTCGGTCACCTTAAGCTAGTGGTCAGGTGTTTGATCCCTGACTCTTGTATATGGAGAAAACTAAGAATCACCTTGTGTGCGCAATGGGGTTCGCGTCGGAGATTAGTCACTGATAAACAATATTGGATACTTTGTATAACATGACTATCAACATAAAATTGAAATGAATGATTGATCTAAGACTGTAGAAAATGGGTTATATGAATTATGCTAAATAGCATGTAGCTCTTAAATTATGAATTTAATGTGAGCCCATTTTGACACATGAACACTTCAAACTGAAGAAAATCTTATTAATCTTATTTGTGCTGATTTTGTTTGTCTTGTTTGTGTTGAACAGCTTTACCCAAACCTTGACAAGGTGGTTTTTTTGGATGACGATGTAGTGGTTCAGCGTGACTTGTCTCCACTATGGGAAATGGATCTGAAAGGTAAAGTTAATGGAGCTGTGGAAACCTGCAGAGGCGAAGATGAATGGGTAATGTCAAAACATTTTAGGAACTACTTCAATTTTTCCCATCCCCTCATTGCAAAGCATTTGGACCCTGACGAGTGTGCTTGGGCTTACGGGATGAATGTCTTTGATCTTCGTGCATGGAGAGCAGCAAATATTAGAGAGACATATCATTCCTGGCTTAAAGAGGTATAAAATCATCTTACCCTCAATCCAATATCATTTAATCATTCAAAATTTTACGGTTTTGGTATATTAATATTTGAAATCTAGCAAGTTCTAAATTGATATTAATGCTTCTGTACCGGCATCAATGTTTTGTTGTATATTAATATATTTGGTAATTGGTGGGTAGTAATGTGCTATGTAGCACTGACATAGACATAAACATAGGACATGCTACTGACTTGTAGAGGCCGATAATAATTTAAGAAAATGAAAGTGATTGAATGTAACTACATGTGTCATGTCGGTGTCGGACACTGACACCAGAACGCCTTCAATGTGAAGTGTCAGTGCTACATAGGAAGTGTGAGAACCTATGTGACTTCAGTTTCCTTTGTTCTTATCCTTTTTACCGACCTTCAAATTATGTTTTTGTGAAGAAGTTATAATTGATAGCTTGTCGTTGTGTATGGCAGAATCTGAGGTCAAACATGACAATGTGGAAGCTCGGAACCCTACCTCCAGCTTTGATTGCATTTAGAGGTCATGTTCATCCAATTGACCCTTCTTGGCACATGCTTGGTTTAGGTTATCAGAACAAAACAAGTGTTGAAAATGTGAAAATGGCTGCTGTTATTCATTACAATGGCCAATCAAAACCCTGGTTAGAGATTGGTTTTGAACATCTTAAACCATTTTGGACCAAGTACGTCAATTATTCAAATGATTTTGTTAGGAACTGTCATATCATGGAATCATAG
Protein sequence

>MS.gene86088.t1

MQLQFSPSMRSITISSNNGFIDLMKIKVAACHISYRTLFHTILILAFLLPFVFILTAVVTLEGVNKCSSFDCLGRRLGPRFLGRVDDSARLVRDFYNILNEVKTGEVPSSLKLPDSFDQMVSDMKNNQYDAKTFAFMLKGMMEKFENEIRESKFAELMNKHFAASSVPKGINCLSLRLTDEYSSNAHARKQLPPPELLPMLSDNSFHHFILSTDNILAASVVVTSTVQSSLKPENIVFHVITDKKTYAGMHSWFALNPPSPAIVEVKGIHQFDWLTRENVPVLEAVESQNGIRNYYHGNHMMGTNLSDTSPRKFASKLQSRSPKYISLLNHIRIYIPELYPNLDKVVFLDDDVVVQRDLSPLWEMDLKGKVNGAVETCRGEDEWVMSKHFRNYFNFSHPLIAKHLDPDECAWAYGMNVFDLRAWRAANIRETYHSWLKENLRSNMTMWKLGTLPPALIAFRGHVHPIDPSWHMLGLGYQNKTSVENVKMAAVIHYNGQSKPWLEIGFEHLKPFWTKYVNYSNDFVRNCHIMES