Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86240.t1 | XP_003613088.1 | 96.8 | 347 | 10 | 1 | 1 | 347 | 1 | 346 | 2.00E-185 | 658.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86240.t1 | Q8LGA1 | 48.8 | 324 | 134 | 9 | 1 | 317 | 1 | 299 | 8.7e-73 | 275.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86240.t1 | G7JXR1 | 96.8 | 347 | 10 | 1 | 1 | 347 | 1 | 346 | 1.4e-185 | 658.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene86240 | MS.gene065674 | PPI |
| MS.gene86240 | MS.gene043340 | PPI |
| MS.gene86240 | MS.gene35752 | PPI |
| MS.gene029573 | MS.gene86240 | PPI |
| MS.gene86240 | MS.gene31553 | PPI |
| MS.gene86240 | MS.gene029005 | PPI |
| MS.gene86240 | MS.gene71698 | PPI |
| MS.gene92988 | MS.gene86240 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86240.t1 | MTR_5g032550 | 96.830 | 347 | 10 | 1 | 1 | 347 | 1 | 346 | 0.0 | 682 |
| MS.gene86240.t1 | MTR_5g032550 | 96.703 | 273 | 8 | 1 | 1 | 273 | 1 | 272 | 0.0 | 534 |
| MS.gene86240.t1 | MTR_8g068950 | 43.478 | 368 | 177 | 9 | 1 | 339 | 1 | 366 | 3.20e-92 | 280 |
| MS.gene86240.t1 | MTR_3g100710 | 50.416 | 361 | 150 | 12 | 1 | 339 | 1 | 354 | 1.86e-88 | 270 |
| MS.gene86240.t1 | MTR_4g080990 | 43.931 | 346 | 175 | 9 | 1 | 339 | 1 | 334 | 3.19e-82 | 253 |
| MS.gene86240.t1 | MTR_5g065830 | 45.734 | 293 | 144 | 6 | 59 | 337 | 54 | 345 | 3.21e-76 | 238 |
| MS.gene86240.t1 | MTR_3g100710 | 46.260 | 361 | 136 | 14 | 1 | 339 | 1 | 325 | 2.78e-68 | 218 |
| MS.gene86240.t1 | MTR_8g063120 | 40.329 | 243 | 137 | 3 | 55 | 293 | 56 | 294 | 6.98e-50 | 170 |
| MS.gene86240.t1 | MTR_8g063120 | 44.385 | 187 | 104 | 0 | 55 | 241 | 56 | 242 | 2.00e-49 | 167 |
| MS.gene86240.t1 | MTR_1g107535 | 36.641 | 262 | 158 | 2 | 93 | 346 | 107 | 368 | 8.59e-47 | 163 |
| MS.gene86240.t1 | MTR_3g102310 | 33.542 | 319 | 186 | 9 | 38 | 337 | 29 | 340 | 1.54e-43 | 154 |
| MS.gene86240.t1 | MTR_5g035360 | 37.991 | 229 | 138 | 2 | 60 | 284 | 44 | 272 | 1.75e-43 | 153 |
| MS.gene86240.t1 | MTR_4g094942 | 33.219 | 292 | 177 | 7 | 58 | 337 | 51 | 336 | 1.40e-42 | 151 |
| MS.gene86240.t1 | MTR_2g089490 | 33.708 | 267 | 153 | 8 | 70 | 322 | 28 | 284 | 1.69e-35 | 131 |
| MS.gene86240.t1 | MTR_2g089490 | 32.576 | 264 | 157 | 7 | 70 | 322 | 28 | 281 | 3.26e-33 | 125 |
| MS.gene86240.t1 | MTR_2g011500 | 29.730 | 259 | 161 | 6 | 55 | 307 | 55 | 298 | 1.16e-32 | 124 |
| MS.gene86240.t1 | MTR_5g015670 | 33.838 | 198 | 122 | 4 | 91 | 283 | 101 | 294 | 3.64e-30 | 118 |
| MS.gene86240.t1 | MTR_3g103080 | 46.218 | 119 | 63 | 1 | 93 | 211 | 67 | 184 | 9.53e-26 | 105 |
| MS.gene86240.t1 | MTR_4g095790 | 29.327 | 208 | 129 | 6 | 91 | 285 | 66 | 268 | 8.67e-18 | 83.2 |
| MS.gene86240.t1 | MTR_3g060770 | 31.579 | 114 | 77 | 1 | 88 | 201 | 56 | 168 | 1.82e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86240.t1 | AT5G65420 | 48.765 | 324 | 134 | 9 | 1 | 317 | 1 | 299 | 2.06e-93 | 281 |
| MS.gene86240.t1 | AT5G65420 | 47.305 | 334 | 134 | 10 | 1 | 317 | 1 | 309 | 3.50e-90 | 273 |
| MS.gene86240.t1 | AT5G65420 | 54.150 | 253 | 98 | 5 | 1 | 251 | 1 | 237 | 5.64e-89 | 268 |
| MS.gene86240.t1 | AT5G10440 | 55.020 | 249 | 99 | 4 | 43 | 281 | 12 | 257 | 2.72e-87 | 265 |
| MS.gene86240.t1 | AT2G22490 | 46.178 | 314 | 147 | 5 | 30 | 323 | 26 | 337 | 1.50e-80 | 250 |
| MS.gene86240.t1 | AT2G22490 | 45.714 | 315 | 148 | 6 | 30 | 323 | 26 | 338 | 5.65e-79 | 246 |
| MS.gene86240.t1 | AT5G65420 | 52.137 | 234 | 94 | 5 | 1 | 232 | 1 | 218 | 1.73e-77 | 238 |
| MS.gene86240.t1 | AT5G10440 | 59.777 | 179 | 71 | 1 | 55 | 232 | 31 | 209 | 5.60e-74 | 228 |
| MS.gene86240.t1 | AT1G70210 | 37.075 | 294 | 153 | 6 | 1 | 286 | 12 | 281 | 3.64e-54 | 181 |
| MS.gene86240.t1 | AT3G50070 | 41.014 | 217 | 123 | 2 | 93 | 305 | 86 | 301 | 2.17e-46 | 161 |
| MS.gene86240.t1 | AT5G67260 | 38.739 | 222 | 130 | 2 | 90 | 307 | 93 | 312 | 1.22e-44 | 157 |
| MS.gene86240.t1 | AT5G67260 | 38.739 | 222 | 130 | 2 | 90 | 307 | 93 | 312 | 6.96e-44 | 156 |
| MS.gene86240.t1 | AT4G34160 | 38.119 | 202 | 121 | 1 | 93 | 290 | 87 | 288 | 9.43e-42 | 149 |
| MS.gene86240.t1 | AT4G03270 | 33.333 | 273 | 161 | 11 | 70 | 330 | 35 | 298 | 4.43e-29 | 114 |
| MS.gene86240.t1 | AT4G03270 | 33.333 | 273 | 160 | 12 | 70 | 330 | 35 | 297 | 3.31e-27 | 109 |
| MS.gene86240.t1 | AT4G37630 | 38.816 | 152 | 90 | 3 | 96 | 245 | 75 | 225 | 2.62e-25 | 103 |
| MS.gene86240.t1 | AT4G37630 | 38.994 | 159 | 92 | 4 | 91 | 245 | 70 | 227 | 9.15e-25 | 101 |
| MS.gene86240.t1 | AT4G37630 | 38.961 | 154 | 89 | 4 | 96 | 245 | 75 | 227 | 2.56e-24 | 101 |
| MS.gene86240.t1 | AT5G02110 | 25.328 | 229 | 164 | 4 | 57 | 283 | 42 | 265 | 2.96e-15 | 76.3 |
| MS.gene86240.t1 | AT1G44110 | 30.159 | 252 | 154 | 9 | 8 | 251 | 145 | 382 | 9.24e-15 | 75.5 |
| MS.gene86240.t1 | AT4G37490 | 32.558 | 172 | 108 | 5 | 42 | 212 | 149 | 313 | 7.09e-14 | 72.8 |
| MS.gene86240.t1 | AT5G02110 | 28.947 | 152 | 101 | 4 | 134 | 283 | 90 | 236 | 8.10e-13 | 68.6 |
| MS.gene86240.t1 | AT3G11520 | 31.746 | 126 | 82 | 2 | 87 | 212 | 185 | 306 | 1.11e-11 | 65.9 |
| MS.gene86240.t1 | AT3G11520 | 31.746 | 126 | 82 | 2 | 87 | 212 | 185 | 306 | 1.45e-11 | 65.5 |
Find 71 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCATGCTTATTATGAATT+TGG | 0.134564 | 5.1:+23082860 | MS.gene86240:CDS |
| GGACTACTATTTGAAGAATT+TGG | 0.142214 | 5.1:-23084061 | None:intergenic |
| TTAGCTTGGAATACAAATTT+TGG | 0.175770 | 5.1:-23083254 | None:intergenic |
| CATTGCAGGTATTGACTTCT+TGG | 0.185519 | 5.1:+23083546 | MS.gene86240:intron |
| CTTCTCACTTGCAGCTAAAA+TGG | 0.203094 | 5.1:+23083093 | MS.gene86240:CDS |
| TTTGATGATGTTGTTGTTGA+TGG | 0.218914 | 5.1:+23082205 | MS.gene86240:CDS |
| AGCGGTGGCCATTTCTTTAA+AGG | 0.230204 | 5.1:+23083594 | MS.gene86240:CDS |
| GTATTGACTTCTTGGAATTC+AGG | 0.261158 | 5.1:+23083554 | MS.gene86240:CDS |
| GAGAGGCTCTTGATTGGATT+TGG | 0.272878 | 5.1:+23082419 | MS.gene86240:CDS |
| GCCTCAATCTGTAGATTTAC+AGG | 0.274886 | 5.1:+23083129 | MS.gene86240:CDS |
| GATGTTGTTGTTGATGGTTC+TGG | 0.287901 | 5.1:+23082211 | MS.gene86240:CDS |
| GTTCTGGAATCTCACCTTCT+TGG | 0.314559 | 5.1:+23082227 | MS.gene86240:CDS |
| TTCTGGAATCTCACCTTCTT+GGG | 0.334756 | 5.1:+23082228 | MS.gene86240:CDS |
| CTAATGATATTAAGCTCATT+AGG | 0.351519 | 5.1:+23083296 | MS.gene86240:CDS |
| AAGATTGCGTAGTGGTGATT+TGG | 0.353471 | 5.1:+23082381 | MS.gene86240:CDS |
| TTGTACCTCAAAGCCCTATA+GGG | 0.359864 | 5.1:+23083981 | MS.gene86240:CDS |
| ATAGTAGTCCAAATGCTAAA+AGG | 0.376678 | 5.1:+23084074 | MS.gene86240:CDS |
| CTGCATCAAGCACCCCTATA+GGG | 0.377105 | 5.1:-23083994 | None:intergenic |
| CCTGCATCAAGCACCCCTAT+AGG | 0.378400 | 5.1:-23083995 | None:intergenic |
| TGATTTCTTCATTGTAGATA+AGG | 0.415109 | 5.1:+23083651 | MS.gene86240:CDS |
| CATTGTGAAGTTCCACTTGA+AGG | 0.419205 | 5.1:-23084112 | None:intergenic |
| CCTATAGGGGTGCTTGATGC+AGG | 0.419427 | 5.1:+23083995 | MS.gene86240:CDS |
| TTGCCTATCTGTGAACTACT+TGG | 0.419531 | 5.1:+23082895 | MS.gene86240:CDS |
| TTTGTACCTCAAAGCCCTAT+AGG | 0.422461 | 5.1:+23083980 | MS.gene86240:CDS |
| TTAGAAGAGAGGCTCTTGAT+TGG | 0.426958 | 5.1:+23082413 | MS.gene86240:CDS |
| TGGCAGTTCCTTTAAAGAAA+TGG | 0.427409 | 5.1:-23083602 | None:intergenic |
| AAGAGTGATGAATTAACAAA+TGG | 0.427900 | 5.1:+23084031 | MS.gene86240:CDS |
| GCTAAAAGGATCAAATTTGA+TGG | 0.428970 | 5.1:+23084088 | MS.gene86240:CDS |
| AAGAGATCTTTCCTTGATCA+AGG | 0.429000 | 5.1:+23083934 | MS.gene86240:CDS |
| GCCTTGTCAACTTCTTGTGC+TGG | 0.451126 | 5.1:-23083622 | None:intergenic |
| GTATACCCTTGATTATGTTA+AGG | 0.453130 | 5.1:-23083430 | None:intergenic |
| TGAGGAAATTGTGAAGGTTA+TGG | 0.456594 | 5.1:+23082315 | MS.gene86240:CDS |
| ATTGCCACCAACCTTGATCA+AGG | 0.465173 | 5.1:-23083945 | None:intergenic |
| TACAATGAAGAAATCAGTTA+TGG | 0.468668 | 5.1:-23083644 | None:intergenic |
| AGCTAAAACAATTCAGAGAA+TGG | 0.472457 | 5.1:+23083271 | MS.gene86240:CDS |
| GCTCATCCTTAACATAATCA+AGG | 0.474269 | 5.1:+23083424 | MS.gene86240:CDS |
| GGACCACACAAATGTTAACT+TGG | 0.481111 | 5.1:+23082249 | MS.gene86240:CDS |
| CTTATCAAATAATCCTCTCT+AGG | 0.496731 | 5.1:-23082361 | None:intergenic |
| ATAGGGCTTTGAGGTACAAA+TGG | 0.498065 | 5.1:-23083977 | None:intergenic |
| GACTACTTCCTTGCTAAGAT+CGG | 0.500349 | 5.1:+23083356 | MS.gene86240:CDS |
| GATCTTTCCTTGATCAAGGT+TGG | 0.502270 | 5.1:+23083938 | MS.gene86240:CDS |
| GATCCAAGTAGTTCACAGAT+AGG | 0.505367 | 5.1:-23082898 | None:intergenic |
| CTACTTGGATCGATTCCTAT+CGG | 0.513308 | 5.1:+23082910 | MS.gene86240:CDS |
| CTTTCCTTGATCAAGGTTGG+TGG | 0.516646 | 5.1:+23083941 | MS.gene86240:CDS |
| GGCTCTTGATTGGATTTGGA+AGG | 0.516855 | 5.1:+23082423 | MS.gene86240:CDS |
| CACAGATAGGCAAAGACTCA+AGG | 0.519430 | 5.1:-23082885 | None:intergenic |
| GAAGGATCATTTACCTAGAG+AGG | 0.532729 | 5.1:+23082348 | MS.gene86240:CDS |
| AGCACCCCTATAGGGCTTTG+AGG | 0.534318 | 5.1:-23083986 | None:intergenic |
| CTATAGGGGTGCTTGATGCA+GGG | 0.537265 | 5.1:+23083996 | MS.gene86240:CDS |
| TTCTGAAATCGCTGCAGCGG+TGG | 0.538599 | 5.1:+23083579 | MS.gene86240:CDS |
| ACCTGTAAATCTACAGATTG+AGG | 0.539104 | 5.1:-23083130 | None:intergenic |
| ACTTGCAGCTAAAATGGAAG+AGG | 0.550041 | 5.1:+23083099 | MS.gene86240:CDS |
| AGCAAGGAAGTAGTCTATGA+AGG | 0.550885 | 5.1:-23083348 | None:intergenic |
| TGATATTAAGCTCATTAGGA+TGG | 0.552715 | 5.1:+23083300 | MS.gene86240:CDS |
| TAACTTGGACAACGTTGGAT+CGG | 0.558747 | 5.1:+23082264 | MS.gene86240:CDS |
| GTCTTCTGAAATCGCTGCAG+CGG | 0.561028 | 5.1:+23083576 | MS.gene86240:CDS |
| AATGTTAACTTGGACAACGT+TGG | 0.568354 | 5.1:+23082259 | MS.gene86240:CDS |
| GGATTTGAGTGTTAGAAGAG+AGG | 0.569462 | 5.1:+23082402 | MS.gene86240:CDS |
| AAATTTGATGGACCTTCAAG+TGG | 0.574775 | 5.1:+23084100 | MS.gene86240:CDS |
| ACATTTGTGTGGTCCCAAGA+AGG | 0.578876 | 5.1:-23082241 | None:intergenic |
| CTCATCCTTAACATAATCAA+GGG | 0.583650 | 5.1:+23083425 | MS.gene86240:CDS |
| GGTTATGGTTGAGAAAGAGA+AGG | 0.598755 | 5.1:+23082330 | MS.gene86240:CDS |
| ACAAAGTGAGGAAATTGTGA+AGG | 0.612417 | 5.1:+23082309 | MS.gene86240:CDS |
| ACAGATAGGCAAAGACTCAA+GGG | 0.613418 | 5.1:-23082884 | None:intergenic |
| TGTACCTCAAAGCCCTATAG+GGG | 0.614209 | 5.1:+23083982 | MS.gene86240:CDS |
| AAGTAGTCTATGAAGGAACA+AGG | 0.614706 | 5.1:-23083341 | None:intergenic |
| TCTCGCAACCGATCTTAGCA+AGG | 0.618158 | 5.1:-23083364 | None:intergenic |
| TGTCCAAGTTAACATTTGTG+TGG | 0.630293 | 5.1:-23082252 | None:intergenic |
| ATGTTCAGAGAGGTGTGACT+TGG | 0.635092 | 5.1:+23083044 | MS.gene86240:intron |
| GCCAGCACAAGAAGTTGACA+AGG | 0.662818 | 5.1:+23083621 | MS.gene86240:CDS |
| TATTTGATAAGATTGCGTAG+TGG | 0.700846 | 5.1:+23082373 | MS.gene86240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAACCAAAATTCAAATA+AGG | - | chr5.1:23082746-23082765 | None:intergenic | 15.0% |
| !!! | TTTTGTTTTAATTCATTGAA+GGG | + | chr5.1:23082452-23082471 | MS.gene86240:intron | 15.0% |
| !!! | TTTTTGTTTTAATTCATTGA+AGG | + | chr5.1:23082451-23082470 | MS.gene86240:intron | 15.0% |
| !!! | TTGAATTTTGGTTTTTTTAC+TGG | + | chr5.1:23082749-23082768 | MS.gene86240:intron | 20.0% |
| ! | AAGAGTGATGAATTAACAAA+TGG | + | chr5.1:23084031-23084050 | MS.gene86240:CDS | 25.0% |
| ! | ATCAATTAATATGCAATGTC+TGG | + | chr5.1:23082622-23082641 | MS.gene86240:intron | 25.0% |
| ! | CAAAACAAACTCATATGTAA+CGG | - | chr5.1:23083186-23083205 | None:intergenic | 25.0% |
| ! | CTAATGATATTAAGCTCATT+AGG | + | chr5.1:23083296-23083315 | MS.gene86240:CDS | 25.0% |
| ! | CTCAATCTTGTATTGTAATT+GGG | + | chr5.1:23082794-23082813 | MS.gene86240:intron | 25.0% |
| ! | TACAATGAAGAAATCAGTTA+TGG | - | chr5.1:23083647-23083666 | None:intergenic | 25.0% |
| ! | TATTTGATATTCGATCTTAC+CGG | - | chr5.1:23082947-23082966 | None:intergenic | 25.0% |
| ! | TGATTTCTTCATTGTAGATA+AGG | + | chr5.1:23083651-23083670 | MS.gene86240:CDS | 25.0% |
| !! | AATTTGATCCTTTTAGCATT+TGG | - | chr5.1:23084085-23084104 | None:intergenic | 25.0% |
| !!! | GTTCATCCTTATTTGAATTT+TGG | + | chr5.1:23082737-23082756 | MS.gene86240:intron | 25.0% |
| !!! | TCAAAAGTGTGTTTTTTATG+TGG | + | chr5.1:23082573-23082592 | MS.gene86240:intron | 25.0% |
| !!! | TTAGCTTGGAATACAAATTT+TGG | - | chr5.1:23083257-23083276 | None:intergenic | 25.0% |
| AGCTAAAACAATTCAGAGAA+TGG | + | chr5.1:23083271-23083290 | MS.gene86240:CDS | 30.0% | |
| ATAGTAGTCCAAATGCTAAA+AGG | + | chr5.1:23084074-23084093 | MS.gene86240:CDS | 30.0% | |
| ATGTGATTCTTAACTAAGTG+TGG | + | chr5.1:23082521-23082540 | MS.gene86240:intron | 30.0% | |
| CAAATAAGGATGAACCAAAA+TGG | - | chr5.1:23082732-23082751 | None:intergenic | 30.0% | |
| CAATTACTCTGATCTCTTAT+TGG | + | chr5.1:23082999-23083018 | MS.gene86240:intron | 30.0% | |
| CCAATTACAATACAAGATTG+AGG | - | chr5.1:23082796-23082815 | None:intergenic | 30.0% | |
| CCTCAATCTTGTATTGTAAT+TGG | + | chr5.1:23082793-23082812 | MS.gene86240:intron | 30.0% | |
| CTCATCCTTAACATAATCAA+GGG | + | chr5.1:23083425-23083444 | MS.gene86240:CDS | 30.0% | |
| CTTATCAAATAATCCTCTCT+AGG | - | chr5.1:23082364-23082383 | None:intergenic | 30.0% | |
| GAAACATGATATCAAACACA+AGG | - | chr5.1:23083867-23083886 | None:intergenic | 30.0% | |
| GATCAGAGTAATTGAAAAAC+CGG | - | chr5.1:23082993-23083012 | None:intergenic | 30.0% | |
| GCTAAAAGGATCAAATTTGA+TGG | + | chr5.1:23084088-23084107 | MS.gene86240:CDS | 30.0% | |
| GCTCATGCTTATTATGAATT+TGG | + | chr5.1:23082860-23082879 | MS.gene86240:CDS | 30.0% | |
| GGACTACTATTTGAAGAATT+TGG | - | chr5.1:23084064-23084083 | None:intergenic | 30.0% | |
| GTATACCCTTGATTATGTTA+AGG | - | chr5.1:23083433-23083452 | None:intergenic | 30.0% | |
| TAAGAACAATGTAGTACACA+AGG | - | chr5.1:23083486-23083505 | None:intergenic | 30.0% | |
| TATTTGATAAGATTGCGTAG+TGG | + | chr5.1:23082373-23082392 | MS.gene86240:CDS | 30.0% | |
| TGATATTAAGCTCATTAGGA+TGG | + | chr5.1:23083300-23083319 | MS.gene86240:CDS | 30.0% | |
| TGTGTACTACATTGTTCTTA+AGG | + | chr5.1:23083486-23083505 | MS.gene86240:intron | 30.0% | |
| ! | AGGACAACATATTTAGAGTA+AGG | - | chr5.1:23083466-23083485 | None:intergenic | 30.0% |
| ! | TGGTTTTTCATTGAGGTAAT+TGG | + | chr5.1:23082642-23082661 | MS.gene86240:intron | 30.0% |
| ! | TTCTCAAGTGATTTCCATTT+TGG | + | chr5.1:23082715-23082734 | MS.gene86240:intron | 30.0% |
| !! | CATTGATATTGATAATGCAC+AGG | + | chr5.1:23083223-23083242 | MS.gene86240:intron | 30.0% |
| !! | TTTGATGATGTTGTTGTTGA+TGG | + | chr5.1:23082205-23082224 | MS.gene86240:CDS | 30.0% |
| !!! | TTCTCTGAATTGTTTTAGCT+TGG | - | chr5.1:23083271-23083290 | None:intergenic | 30.0% |
| AAGAGATCTTTCCTTGATCA+AGG | + | chr5.1:23083934-23083953 | MS.gene86240:CDS | 35.0% | |
| AAGTAGTCTATGAAGGAACA+AGG | - | chr5.1:23083344-23083363 | None:intergenic | 35.0% | |
| ACAAAGTGAGGAAATTGTGA+AGG | + | chr5.1:23082309-23082328 | MS.gene86240:CDS | 35.0% | |
| ACATGCCATACACAACAATT+AGG | - | chr5.1:23083028-23083047 | None:intergenic | 35.0% | |
| ACCTGTAAATCTACAGATTG+AGG | - | chr5.1:23083133-23083152 | None:intergenic | 35.0% | |
| AGATCTGTAACTGCATACTA+GGG | - | chr5.1:23083708-23083727 | None:intergenic | 35.0% | |
| CTTGCTCACTGTATTTATGT+GGG | - | chr5.1:23083813-23083832 | None:intergenic | 35.0% | |
| CTTTCTGTAATGTGATCAAC+AGG | + | chr5.1:23082838-23082857 | MS.gene86240:intron | 35.0% | |
| GACCATCCAATCTAAGTTAA+TGG | + | chr5.1:23083729-23083748 | MS.gene86240:intron | 35.0% | |
| GACCATTAACTTAGATTGGA+TGG | - | chr5.1:23083734-23083753 | None:intergenic | 35.0% | |
| GCTCATCCTTAACATAATCA+AGG | + | chr5.1:23083424-23083443 | MS.gene86240:CDS | 35.0% | |
| GTACAATTCAATTGCATTGC+AGG | + | chr5.1:23083532-23083551 | MS.gene86240:intron | 35.0% | |
| TAATTTGAACTTCTACCGCA+GGG | + | chr5.1:23083770-23083789 | MS.gene86240:intron | 35.0% | |
| TCTCGACCATTAACTTAGAT+TGG | - | chr5.1:23083738-23083757 | None:intergenic | 35.0% | |
| TCTTCATTGTAGATAAGGTG+AGG | + | chr5.1:23083656-23083675 | MS.gene86240:intron | 35.0% | |
| TCTTGCTCACTGTATTTATG+TGG | - | chr5.1:23083814-23083833 | None:intergenic | 35.0% | |
| TGAGGAAATTGTGAAGGTTA+TGG | + | chr5.1:23082315-23082334 | MS.gene86240:CDS | 35.0% | |
| TGTCCAAGTTAACATTTGTG+TGG | - | chr5.1:23082255-23082274 | None:intergenic | 35.0% | |
| ! | AAATTTGATGGACCTTCAAG+TGG | + | chr5.1:23084100-23084119 | MS.gene86240:CDS | 35.0% |
| ! | AATGTTAACTTGGACAACGT+TGG | + | chr5.1:23082259-23082278 | MS.gene86240:CDS | 35.0% |
| ! | AGTTTGCTTGTGTTCTTTAC+CGG | + | chr5.1:23082971-23082990 | MS.gene86240:intron | 35.0% |
| ! | TCTCGCAATCAATGACTTTT+CGG | - | chr5.1:23083396-23083415 | None:intergenic | 35.0% |
| ! | TGCTTGCTCAACTAATTTTG+TGG | + | chr5.1:23082679-23082698 | MS.gene86240:intron | 35.0% |
| ! | TGGCAGTTCCTTTAAAGAAA+TGG | - | chr5.1:23083605-23083624 | None:intergenic | 35.0% |
| !! | ATGTTTTGTTGCACAAAGTG+AGG | + | chr5.1:23082297-23082316 | MS.gene86240:CDS | 35.0% |
| !! | GATATTGATAATGCACAGGT+TGG | + | chr5.1:23083227-23083246 | MS.gene86240:intron | 35.0% |
| !! | GTATTGACTTCTTGGAATTC+AGG | + | chr5.1:23083554-23083573 | MS.gene86240:CDS | 35.0% |
| !!! | CAATGTCTGGTTTTTCATTG+AGG | + | chr5.1:23082635-23082654 | MS.gene86240:intron | 35.0% |
| !!! | CCTATCGGTTTTTCAATTAC+CGG | + | chr5.1:23082925-23082944 | MS.gene86240:CDS | 35.0% |
| AAGATTGCGTAGTGGTGATT+TGG | + | chr5.1:23082381-23082400 | MS.gene86240:CDS | 40.0% | |
| ACAGATAGGCAAAGACTCAA+GGG | - | chr5.1:23082887-23082906 | None:intergenic | 40.0% | |
| ACTTGCAGCTAAAATGGAAG+AGG | + | chr5.1:23083099-23083118 | MS.gene86240:CDS | 40.0% | |
| AGCAAGGAAGTAGTCTATGA+AGG | - | chr5.1:23083351-23083370 | None:intergenic | 40.0% | |
| ATACTAGGGAATCCATTTCC+GGG | - | chr5.1:23083694-23083713 | None:intergenic | 40.0% | |
| CATACTAGGGAATCCATTTC+CGG | - | chr5.1:23083695-23083714 | None:intergenic | 40.0% | |
| CATTGTGAAGTTCCACTTGA+AGG | - | chr5.1:23084115-23084134 | None:intergenic | 40.0% | |
| CCGGTAATTGAAAAACCGAT+AGG | - | chr5.1:23082928-23082947 | None:intergenic | 40.0% | |
| CTGTATTTATGTGGGAACCA+CGG | - | chr5.1:23083805-23083824 | None:intergenic | 40.0% | |
| CTTCTCACTTGCAGCTAAAA+TGG | + | chr5.1:23083093-23083112 | MS.gene86240:CDS | 40.0% | |
| CTTGATTGGATTTGGAAGGT+TGG | + | chr5.1:23082427-23082446 | MS.gene86240:intron | 40.0% | |
| GAAGGATCATTTACCTAGAG+AGG | + | chr5.1:23082348-23082367 | MS.gene86240:CDS | 40.0% | |
| GACTACTTCCTTGCTAAGAT+CGG | + | chr5.1:23083356-23083375 | MS.gene86240:CDS | 40.0% | |
| GAGATCTGTAACTGCATACT+AGG | - | chr5.1:23083709-23083728 | None:intergenic | 40.0% | |
| GATCCAAGTAGTTCACAGAT+AGG | - | chr5.1:23082901-23082920 | None:intergenic | 40.0% | |
| GATCTTTCCTTGATCAAGGT+TGG | + | chr5.1:23083938-23083957 | MS.gene86240:CDS | 40.0% | |
| GCCTCAATCTGTAGATTTAC+AGG | + | chr5.1:23083129-23083148 | MS.gene86240:CDS | 40.0% | |
| GGAAGCCTAATTGTTGTGTA+TGG | + | chr5.1:23083020-23083039 | MS.gene86240:intron | 40.0% | |
| GGACCACACAAATGTTAACT+TGG | + | chr5.1:23082249-23082268 | MS.gene86240:CDS | 40.0% | |
| GGATTTGAGTGTTAGAAGAG+AGG | + | chr5.1:23082402-23082421 | MS.gene86240:CDS | 40.0% | |
| GGTTATGGTTGAGAAAGAGA+AGG | + | chr5.1:23082330-23082349 | MS.gene86240:CDS | 40.0% | |
| GTAATTTGAACTTCTACCGC+AGG | + | chr5.1:23083769-23083788 | MS.gene86240:intron | 40.0% | |
| TAACTTGGACAACGTTGGAT+CGG | + | chr5.1:23082264-23082283 | MS.gene86240:CDS | 40.0% | |
| TTAGAAGAGAGGCTCTTGAT+TGG | + | chr5.1:23082413-23082432 | MS.gene86240:CDS | 40.0% | |
| TTGCCTATCTGTGAACTACT+TGG | + | chr5.1:23082895-23082914 | MS.gene86240:CDS | 40.0% | |
| TTGTACCTCAAAGCCCTATA+GGG | + | chr5.1:23083981-23084000 | MS.gene86240:CDS | 40.0% | |
| TTTCCTTTGCTGAATTGTGC+AGG | + | chr5.1:23083883-23083902 | MS.gene86240:intron | 40.0% | |
| TTTGTACCTCAAAGCCCTAT+AGG | + | chr5.1:23083980-23083999 | MS.gene86240:CDS | 40.0% | |
| ! | CTACTTGGATCGATTCCTAT+CGG | + | chr5.1:23082910-23082929 | MS.gene86240:CDS | 40.0% |
| ! | CTCGCAATCAATGACTTTTC+GGG | - | chr5.1:23083395-23083414 | None:intergenic | 40.0% |
| !! | ATAGGGCTTTGAGGTACAAA+TGG | - | chr5.1:23083980-23083999 | None:intergenic | 40.0% |
| !! | CATTGCAGGTATTGACTTCT+TGG | + | chr5.1:23083546-23083565 | MS.gene86240:intron | 40.0% |
| !! | GATGTTGTTGTTGATGGTTC+TGG | + | chr5.1:23082211-23082230 | MS.gene86240:CDS | 40.0% |
| !! | TTCTGGAATCTCACCTTCTT+GGG | + | chr5.1:23082228-23082247 | MS.gene86240:CDS | 40.0% |
| ACATTTGTGTGGTCCCAAGA+AGG | - | chr5.1:23082244-23082263 | None:intergenic | 45.0% | |
| AGATAAGGTGAGGTTGTGTG+TGG | + | chr5.1:23083666-23083685 | MS.gene86240:intron | 45.0% | |
| AGCGGTGGCCATTTCTTTAA+AGG | + | chr5.1:23083594-23083613 | MS.gene86240:CDS | 45.0% | |
| ATTGCCACCAACCTTGATCA+AGG | - | chr5.1:23083948-23083967 | None:intergenic | 45.0% | |
| CACAGATAGGCAAAGACTCA+AGG | - | chr5.1:23082888-23082907 | None:intergenic | 45.0% | |
| CTTTCCTTGATCAAGGTTGG+TGG | + | chr5.1:23083941-23083960 | MS.gene86240:CDS | 45.0% | |
| GAGAGGCTCTTGATTGGATT+TGG | + | chr5.1:23082419-23082438 | MS.gene86240:CDS | 45.0% | |
| GGCTCTTGATTGGATTTGGA+AGG | + | chr5.1:23082423-23082442 | MS.gene86240:CDS | 45.0% | |
| TCTCCTGCACAATTCAGCAA+AGG | - | chr5.1:23083889-23083908 | None:intergenic | 45.0% | |
| TGTACCTCAAAGCCCTATAG+GGG | + | chr5.1:23083982-23084001 | MS.gene86240:CDS | 45.0% | |
| TGTGTATGGCATGTTCAGAG+AGG | + | chr5.1:23083034-23083053 | MS.gene86240:intron | 45.0% | |
| ! | ATGTTCAGAGAGGTGTGACT+TGG | + | chr5.1:23083044-23083063 | MS.gene86240:intron | 45.0% |
| !! | GTTCTGGAATCTCACCTTCT+TGG | + | chr5.1:23082227-23082246 | MS.gene86240:CDS | 45.0% |
| AACTTCTACCGCAGGGAATC+CGG | + | chr5.1:23083777-23083796 | MS.gene86240:intron | 50.0% | |
| CTGCATCAAGCACCCCTATA+GGG | - | chr5.1:23083997-23084016 | None:intergenic | 50.0% | |
| GCCAGCACAAGAAGTTGACA+AGG | + | chr5.1:23083621-23083640 | MS.gene86240:CDS | 50.0% | |
| GCCTTGTCAACTTCTTGTGC+TGG | - | chr5.1:23083625-23083644 | None:intergenic | 50.0% | |
| TCTCGCAACCGATCTTAGCA+AGG | - | chr5.1:23083367-23083386 | None:intergenic | 50.0% | |
| TTGTGTGTGGTTCCCGGAAA+TGG | + | chr5.1:23083679-23083698 | MS.gene86240:intron | 50.0% | |
| !! | CTATAGGGGTGCTTGATGCA+GGG | + | chr5.1:23083996-23084015 | MS.gene86240:CDS | 50.0% |
| !! | GTCTTCTGAAATCGCTGCAG+CGG | + | chr5.1:23083576-23083595 | MS.gene86240:CDS | 50.0% |
| ACTTCTACCGCAGGGAATCC+GGG | + | chr5.1:23083778-23083797 | MS.gene86240:intron | 55.0% | |
| AGCACCCCTATAGGGCTTTG+AGG | - | chr5.1:23083989-23084008 | None:intergenic | 55.0% | |
| CCTGCATCAAGCACCCCTAT+AGG | - | chr5.1:23083998-23084017 | None:intergenic | 55.0% | |
| GTGAGGTTGTGTGTGGTTCC+CGG | + | chr5.1:23083673-23083692 | MS.gene86240:intron | 55.0% | |
| TTATGTGGGAACCACGGACC+CGG | - | chr5.1:23083799-23083818 | None:intergenic | 55.0% | |
| !! | CCTATAGGGGTGCTTGATGC+AGG | + | chr5.1:23083995-23084014 | MS.gene86240:CDS | 55.0% |
| !! | TTCTGAAATCGCTGCAGCGG+TGG | + | chr5.1:23083579-23083598 | MS.gene86240:CDS | 55.0% |
| CCACGGACCCGGATTCCCTG+CGG | - | chr5.1:23083788-23083807 | None:intergenic | 70.0% | |
| CCGCAGGGAATCCGGGTCCG+TGG | + | chr5.1:23083785-23083804 | MS.gene86240:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 23082139 | 23084135 | 23082139 | ID=MS.gene86240 |
| chr5.1 | mRNA | 23082139 | 23084135 | 23082139 | ID=MS.gene86240.t1;Parent=MS.gene86240 |
| chr5.1 | exon | 23082139 | 23082444 | 23082139 | ID=MS.gene86240.t1.exon1;Parent=MS.gene86240.t1 |
| chr5.1 | CDS | 23082139 | 23082444 | 23082139 | ID=cds.MS.gene86240.t1;Parent=MS.gene86240.t1 |
| chr5.1 | exon | 23082860 | 23082946 | 23082860 | ID=MS.gene86240.t1.exon2;Parent=MS.gene86240.t1 |
| chr5.1 | CDS | 23082860 | 23082946 | 23082860 | ID=cds.MS.gene86240.t1;Parent=MS.gene86240.t1 |
| chr5.1 | exon | 23083052 | 23083150 | 23083052 | ID=MS.gene86240.t1.exon3;Parent=MS.gene86240.t1 |
| chr5.1 | CDS | 23083052 | 23083150 | 23083052 | ID=cds.MS.gene86240.t1;Parent=MS.gene86240.t1 |
| chr5.1 | exon | 23083245 | 23083446 | 23083245 | ID=MS.gene86240.t1.exon4;Parent=MS.gene86240.t1 |
| chr5.1 | CDS | 23083245 | 23083446 | 23083245 | ID=cds.MS.gene86240.t1;Parent=MS.gene86240.t1 |
| chr5.1 | exon | 23083554 | 23083672 | 23083554 | ID=MS.gene86240.t1.exon5;Parent=MS.gene86240.t1 |
| chr5.1 | CDS | 23083554 | 23083672 | 23083554 | ID=cds.MS.gene86240.t1;Parent=MS.gene86240.t1 |
| chr5.1 | exon | 23083905 | 23084135 | 23083905 | ID=MS.gene86240.t1.exon6;Parent=MS.gene86240.t1 |
| chr5.1 | CDS | 23083905 | 23084135 | 23083905 | ID=cds.MS.gene86240.t1;Parent=MS.gene86240.t1 |
| Gene Sequence |
| Protein sequence |
