Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86527.t1 | RHN55670.1 | 84.8 | 46 | 7 | 0 | 11 | 56 | 2 | 47 | 4.40E-14 | 87 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86527.t1 | A0A396HQQ9 | 84.8 | 46 | 7 | 0 | 11 | 56 | 2 | 47 | 3.2e-14 | 87.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051676 | MS.gene86527 | 0.800765 | 1.24E-48 | -1.69E-46 |
| MS.gene051902 | MS.gene86527 | 0.81764 | 2.97E-52 | -1.69E-46 |
| MS.gene056390 | MS.gene86527 | 0.807864 | 4.10E-50 | -1.69E-46 |
| MS.gene059171 | MS.gene86527 | 0.804054 | 2.60E-49 | -1.69E-46 |
| MS.gene061100 | MS.gene86527 | 0.801259 | 9.80E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86527.t1 | MTR_1g041830 | 56.164 | 73 | 27 | 1 | 9 | 81 | 1 | 68 | 5.65e-22 | 82.4 |
| MS.gene86527.t1 | MTR_5g064590 | 78.261 | 46 | 10 | 0 | 11 | 56 | 1 | 46 | 7.19e-22 | 85.9 |
| MS.gene86527.t1 | MTR_6g477970 | 76.087 | 46 | 11 | 0 | 11 | 56 | 1 | 46 | 1.61e-20 | 79.3 |
| MS.gene86527.t1 | MTR_6g011580 | 62.295 | 61 | 18 | 1 | 1 | 56 | 1 | 61 | 2.00e-20 | 78.6 |
| MS.gene86527.t1 | MTR_8g076180 | 76.087 | 46 | 11 | 0 | 11 | 56 | 1 | 46 | 1.80e-19 | 79.0 |
| MS.gene86527.t1 | MTR_2g450060 | 70.833 | 48 | 14 | 0 | 9 | 56 | 3 | 50 | 7.56e-19 | 79.3 |
| MS.gene86527.t1 | MTR_6g477950 | 62.963 | 54 | 20 | 0 | 3 | 56 | 172 | 225 | 1.02e-18 | 78.2 |
| MS.gene86527.t1 | MTR_7g025160 | 57.143 | 56 | 24 | 0 | 1 | 56 | 1 | 56 | 6.08e-18 | 75.1 |
| MS.gene86527.t1 | MTR_5g004860 | 73.913 | 46 | 12 | 0 | 11 | 56 | 1 | 46 | 6.54e-18 | 76.6 |
| MS.gene86527.t1 | MTR_1g043690 | 77.273 | 44 | 10 | 0 | 13 | 56 | 10 | 53 | 1.19e-17 | 75.9 |
| MS.gene86527.t1 | MTR_8g027910 | 58.929 | 56 | 23 | 0 | 1 | 56 | 1 | 56 | 1.33e-17 | 74.3 |
| MS.gene86527.t1 | MTR_0003s0290 | 69.565 | 46 | 14 | 0 | 11 | 56 | 1 | 46 | 4.54e-17 | 74.3 |
| MS.gene86527.t1 | MTR_6g037120 | 72.093 | 43 | 12 | 0 | 11 | 53 | 1 | 43 | 1.04e-16 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 33 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAACCCAAAGAAGGATTTC+TGG | 0.203063 | 5.1:-15176380 | MS.gene86527:CDS |
| AGCTTCCAGAAATCCTTCTT+TGG | 0.249300 | 5.1:+15176375 | None:intergenic |
| GCAAGACCAGTTCAATTTAT+CGG | 0.369808 | 5.1:-15176408 | MS.gene86527:CDS |
| AGACAAATGGGTTGTTGTTA+AGG | 0.378712 | 5.1:-15176337 | MS.gene86527:CDS |
| GTCGCGGTGGTCGCCGGCGA+AGG | 0.411604 | 5.1:-15175785 | MS.gene86527:CDS |
| GCTTCCAGAAATCCTTCTTT+GGG | 0.413903 | 5.1:+15176376 | None:intergenic |
| AATTGAACTGGTCTTGCCAT+TGG | 0.425041 | 5.1:+15176414 | None:intergenic |
| ATCTGAAGCCACCAGTGTTA+TGG | 0.429337 | 5.1:+15175811 | None:intergenic |
| AAATGGGTTGTTGTTAAGGA+TGG | 0.435334 | 5.1:-15176333 | MS.gene86527:CDS |
| ATTGAACTGGTCTTGCCATT+GGG | 0.450658 | 5.1:+15176415 | None:intergenic |
| GATTCCGTCGCGGTGGTCGC+CGG | 0.468443 | 5.1:-15175791 | MS.gene86527:CDS |
| CGGTGATATTAACCCAAAGA+AGG | 0.479855 | 5.1:-15176388 | MS.gene86527:CDS |
| TTCTTTGTTTGGTTCTGTAG+AGG | 0.482918 | 5.1:-15175745 | None:intergenic |
| TAAGGATGGGAGGGAGCACT+TGG | 0.492942 | 5.1:-15176319 | MS.gene86527:CDS |
| CTGTGAGGGTGAAAGACAAA+TGG | 0.494992 | 5.1:-15176350 | MS.gene86527:CDS |
| ATATCACCGATAAATTGAAC+TGG | 0.497635 | 5.1:+15176402 | None:intergenic |
| GATGGTTATCGTTGATGCCA+AGG | 0.528606 | 5.1:-15176295 | MS.gene86527:intron |
| AATGGGTTGTTGTTAAGGAT+GGG | 0.540007 | 5.1:-15176332 | MS.gene86527:CDS |
| TGGGAGGGAGCACTTGGAGA+TGG | 0.552726 | 5.1:-15176313 | MS.gene86527:CDS |
| ATTCACAAATTATGGCATCA+AGG | 0.563892 | 5.1:-15178090 | None:intergenic |
| GGTTGTTGTTAAGGATGGGA+GGG | 0.576229 | 5.1:-15176328 | MS.gene86527:CDS |
| ATGAATCGAAATACCTTCGC+CGG | 0.578909 | 5.1:+15175772 | None:intergenic |
| ATTCACAAATTAGCTCATCA+AGG | 0.582745 | 5.1:-15177988 | MS.gene86527:intron |
| GGGTTGTTGTTAAGGATGGG+AGG | 0.583709 | 5.1:-15176329 | MS.gene86527:CDS |
| TTCGCCGGCGACCACCGCGA+CGG | 0.595059 | 5.1:+15175787 | None:intergenic |
| TGTGAGGGTGAAAGACAAAT+GGG | 0.607479 | 5.1:-15176349 | MS.gene86527:CDS |
| GGCTTCAGATTCCGTCGCGG+TGG | 0.635450 | 5.1:-15175798 | MS.gene86527:CDS |
| TTTGTAGACCATAACACTGG+TGG | 0.665088 | 5.1:-15175819 | MS.gene86527:intron |
| ATTTCTGGAAGCTGACTGTG+AGG | 0.675527 | 5.1:-15176365 | MS.gene86527:CDS |
| TGTTCTCAGAGCAATCCCAA+TGG | 0.678231 | 5.1:-15176430 | MS.gene86527:intron |
| TTTCTGGAAGCTGACTGTGA+GGG | 0.678677 | 5.1:-15176364 | MS.gene86527:CDS |
| CCATTTGTAGACCATAACAC+TGG | 0.688347 | 5.1:-15175822 | MS.gene86527:intron |
| GGTGGCTTCAGATTCCGTCG+CGG | 0.771606 | 5.1:-15175801 | MS.gene86527:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGATTTATAATGTTATA+GGG | + | chr5.1:15177003-15177022 | None:intergenic | 10.0% |
| !! | TAAAAGATTTATAATGTTAT+AGG | + | chr5.1:15177004-15177023 | None:intergenic | 10.0% |
| !! | TAATATTTAAATATTAGTGA+TGG | + | chr5.1:15176972-15176991 | None:intergenic | 10.0% |
| !!! | AATTTTTATCTTACTTTAAT+TGG | - | chr5.1:15177033-15177052 | MS.gene86527:intron | 10.0% |
| !! | AAAGATTTATAATGTTATAG+GGG | + | chr5.1:15177002-15177021 | None:intergenic | 15.0% |
| !! | AAGTAAGATAAAAATTGTTA+TGG | + | chr5.1:15177029-15177048 | None:intergenic | 15.0% |
| !! | ATAACAAATAAAAAGATCTA+CGG | - | chr5.1:15177686-15177705 | MS.gene86527:intron | 15.0% |
| !! | TAGTAAATAAAAAATGTTAG+TGG | + | chr5.1:15175765-15175784 | None:intergenic | 15.0% |
| !!! | GATATTTCATTTATTTGTTA+TGG | + | chr5.1:15177761-15177780 | None:intergenic | 15.0% |
| !!! | TAATTTATTTTAGCAACATA+AGG | + | chr5.1:15175989-15176008 | None:intergenic | 15.0% |
| !! | AAATGATGATATCATTAGAT+TGG | - | chr5.1:15176501-15176520 | MS.gene86527:intron | 20.0% |
| !! | AACAATAAACAATTCTTCAT+GGG | - | chr5.1:15176840-15176859 | MS.gene86527:intron | 20.0% |
| !! | AAGTGTTATAAAAATCTTGT+AGG | + | chr5.1:15177365-15177384 | None:intergenic | 20.0% |
| !! | TGATCAGAAATAAAAGAAAT+AGG | - | chr5.1:15177876-15177895 | MS.gene86527:intron | 20.0% |
| !! | TTATATGATTATGCAAGAAA+AGG | - | chr5.1:15176092-15176111 | MS.gene86527:intron | 20.0% |
| !!! | CTTTGCTACATAATTTTTAT+TGG | - | chr5.1:15177320-15177339 | MS.gene86527:intron | 20.0% |
| !!! | GTAGATCTTTTTATTTGTTA+TGG | + | chr5.1:15177687-15177706 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTATAGATACCAA+TGG | + | chr5.1:15176164-15176183 | None:intergenic | 20.0% |
| ! | AAATGAAATGTTTGTAGATG+TGG | - | chr5.1:15176671-15176690 | MS.gene86527:intron | 25.0% |
| ! | AAATTATGTAGCAAAGTGTA+AGG | + | chr5.1:15177316-15177335 | None:intergenic | 25.0% |
| ! | AATAAATAAATATGTGGGTG+TGG | - | chr5.1:15176724-15176743 | MS.gene86527:intron | 25.0% |
| ! | ATCTAGAAACAAAATTAGGA+TGG | + | chr5.1:15177248-15177267 | None:intergenic | 25.0% |
| ! | CAACAATAAACAATTCTTCA+TGG | - | chr5.1:15176839-15176858 | MS.gene86527:intron | 25.0% |
| ! | CATGAAGAATTGTTTATTGT+TGG | + | chr5.1:15176841-15176860 | None:intergenic | 25.0% |
| ! | GAAAAATGAAGTGAATGATA+TGG | - | chr5.1:15177911-15177930 | MS.gene86527:intron | 25.0% |
| ! | GATGAAAAAGATCAAAAAGA+GGG | - | chr5.1:15176367-15176386 | MS.gene86527:CDS | 25.0% |
| ! | TAAAGATACACATAAAACCT+TGG | + | chr5.1:15177552-15177571 | None:intergenic | 25.0% |
| ! | TGCAAAAGCAATAAGTTATA+TGG | + | chr5.1:15177125-15177144 | None:intergenic | 25.0% |
| ! | TGCTTAACAGACTAAAATAA+TGG | - | chr5.1:15176783-15176802 | MS.gene86527:intron | 25.0% |
| !! | GATTCATGATTTTCTTTGTT+TGG | - | chr5.1:15178071-15178090 | MS.gene86527:intron | 25.0% |
| !!! | AGTTTAATTTTATGCAGAGA+AGG | + | chr5.1:15177854-15177873 | None:intergenic | 25.0% |
| !!! | TTATTTTTTCGAAATCCTCA+TGG | + | chr5.1:15176466-15176485 | None:intergenic | 25.0% |
| AACATCTGAGCAATAATTCT+GGG | + | chr5.1:15177806-15177825 | None:intergenic | 30.0% | |
| AAGTGAATGATATGGAAGAA+GGG | - | chr5.1:15177919-15177938 | MS.gene86527:intron | 30.0% | |
| AAGTGTAAGGACTTAAAAGA+AGG | + | chr5.1:15177303-15177322 | None:intergenic | 30.0% | |
| AAGTTATATGGTGTACAATG+TGG | + | chr5.1:15177113-15177132 | None:intergenic | 30.0% | |
| AGTTATATGGTGTACAATGT+GGG | + | chr5.1:15177112-15177131 | None:intergenic | 30.0% | |
| ATATCACCGATAAATTGAAC+TGG | + | chr5.1:15177428-15177447 | None:intergenic | 30.0% | |
| ATATTCACACTCATCTACAT+GGG | - | chr5.1:15176929-15176948 | MS.gene86527:intron | 30.0% | |
| ATTCACAAATTAGCTCATCA+AGG | - | chr5.1:15175839-15175858 | MS.gene86527:intron | 30.0% | |
| CACATAGAAGGATTACTAAA+AGG | - | chr5.1:15176135-15176154 | MS.gene86527:intron | 30.0% | |
| CTAATCAAAGTTCACATAGA+AGG | - | chr5.1:15176123-15176142 | MS.gene86527:intron | 30.0% | |
| GCAGATCTAGAAACAAAATT+AGG | + | chr5.1:15177252-15177271 | None:intergenic | 30.0% | |
| GGATGAAAAAGATCAAAAAG+AGG | - | chr5.1:15176366-15176385 | MS.gene86527:CDS | 30.0% | |
| TAACATCTGAGCAATAATTC+TGG | + | chr5.1:15177807-15177826 | None:intergenic | 30.0% | |
| TATATTCACACTCATCTACA+TGG | - | chr5.1:15176928-15176947 | MS.gene86527:intron | 30.0% | |
| !! | ATGGGTTGATGTATTAATCA+AGG | + | chr5.1:15177989-15178008 | None:intergenic | 30.0% |
| !! | CATCTTTTGATTGTTGTTGT+TGG | - | chr5.1:15176253-15176272 | MS.gene86527:intron | 30.0% |
| !! | GGTATGGTACTATTTTAAGA+GGG | + | chr5.1:15177091-15177110 | None:intergenic | 30.0% |
| !! | TTAGATTGGTAGTGTTGTAA+TGG | - | chr5.1:15176515-15176534 | MS.gene86527:intron | 30.0% |
| AACAATTCTTCATGGGAAAC+AGG | - | chr5.1:15176847-15176866 | MS.gene86527:intron | 35.0% | |
| ATGAGAGAAGTGGTTAGAAA+AGG | + | chr5.1:15177208-15177227 | None:intergenic | 35.0% | |
| CAGTGTTATGGTCTACAAAT+GGG | + | chr5.1:15178007-15178026 | None:intergenic | 35.0% | |
| GAAGTGAATGATATGGAAGA+AGG | - | chr5.1:15177918-15177937 | MS.gene86527:intron | 35.0% | |
| GAGAAGGCAATTTCGAATTT+CGG | + | chr5.1:15177838-15177857 | None:intergenic | 35.0% | |
| GATTACTAAAAGGCTACCAT+TGG | - | chr5.1:15176145-15176164 | MS.gene86527:intron | 35.0% | |
| GCAAGACCAGTTCAATTTAT+CGG | - | chr5.1:15177419-15177438 | MS.gene86527:intron | 35.0% | |
| TAGCAACATAAACTTCGAAC+AGG | + | chr5.1:15176030-15176049 | None:intergenic | 35.0% | |
| TTAACCCAAAGAAGGATTTC+TGG | - | chr5.1:15177447-15177466 | MS.gene86527:intron | 35.0% | |
| TTTGAAAGAAGTCTGCGATT+TGG | - | chr5.1:15176341-15176360 | MS.gene86527:CDS | 35.0% | |
| ! | AGACCAAAGTATCAGATCTA+CGG | - | chr5.1:15176434-15176453 | MS.gene86527:intron | 35.0% |
| ! | AGCAATAATTCTGGGTTTTC+TGG | + | chr5.1:15177798-15177817 | None:intergenic | 35.0% |
| !! | AAATGGGTTGTTGTTAAGGA+TGG | - | chr5.1:15177494-15177513 | MS.gene86527:intron | 35.0% |
| !! | AATGGGTTGTTGTTAAGGAT+GGG | - | chr5.1:15177495-15177514 | MS.gene86527:intron | 35.0% |
| !! | AGACAAATGGGTTGTTGTTA+AGG | - | chr5.1:15177490-15177509 | MS.gene86527:intron | 35.0% |
| !! | CCTTTTAGCTATTGTACGAA+GGG | + | chr5.1:15177175-15177194 | None:intergenic | 35.0% |
| !! | GGGTATGGTACTATTTTAAG+AGG | + | chr5.1:15177092-15177111 | None:intergenic | 35.0% |
| !! | TCCTTTTAGCTATTGTACGA+AGG | + | chr5.1:15177176-15177195 | None:intergenic | 35.0% |
| !! | TGGACTTTTTCTTACGTTCA+AGG | + | chr5.1:15177667-15177686 | None:intergenic | 35.0% |
| ACACCGTAGATCTGATACTT+TGG | + | chr5.1:15176440-15176459 | None:intergenic | 40.0% | |
| AGCTTCCAGAAATCCTTCTT+TGG | + | chr5.1:15177455-15177474 | None:intergenic | 40.0% | |
| ATGAATCGAAATACCTTCGC+CGG | + | chr5.1:15178058-15178077 | None:intergenic | 40.0% | |
| CATCCAAAGTCATATGTTGG+TGG | - | chr5.1:15176539-15176558 | MS.gene86527:intron | 40.0% | |
| CATGCGCAATAACAGTGTTA+TGG | - | chr5.1:15176875-15176894 | MS.gene86527:intron | 40.0% | |
| CCAGTGTTATGGTCTACAAA+TGG | + | chr5.1:15178008-15178027 | None:intergenic | 40.0% | |
| CCATTTGTAGACCATAACAC+TGG | - | chr5.1:15178005-15178024 | MS.gene86527:intron | 40.0% | |
| CCCTTCGTACAATAGCTAAA+AGG | - | chr5.1:15177172-15177191 | MS.gene86527:intron | 40.0% | |
| CGGTGATATTAACCCAAAGA+AGG | - | chr5.1:15177439-15177458 | MS.gene86527:intron | 40.0% | |
| GAAAATAGAAGGAGAAGGAG+CGG | - | chr5.1:15176575-15176594 | MS.gene86527:intron | 40.0% | |
| GCTTCCAGAAATCCTTCTTT+GGG | + | chr5.1:15177454-15177473 | None:intergenic | 40.0% | |
| GGACATCCAAAGTCATATGT+TGG | - | chr5.1:15176536-15176555 | MS.gene86527:intron | 40.0% | |
| TAGCAACATAAGGTTCGAAC+AGG | + | chr5.1:15175979-15175998 | None:intergenic | 40.0% | |
| TAGCTATTGTACGAAGGGTA+TGG | + | chr5.1:15177170-15177189 | None:intergenic | 40.0% | |
| TATGGTGTACAATGTGGGTA+TGG | + | chr5.1:15177107-15177126 | None:intergenic | 40.0% | |
| TCTCATCCATTGAGCTCTTT+AGG | - | chr5.1:15177222-15177241 | MS.gene86527:intron | 40.0% | |
| TGTGAGGGTGAAAGACAAAT+GGG | - | chr5.1:15177478-15177497 | MS.gene86527:intron | 40.0% | |
| TTTGTAGACCATAACACTGG+TGG | - | chr5.1:15178008-15178027 | MS.gene86527:intron | 40.0% | |
| ! | AGCTATTGTACGAAGGGTAT+GGG | + | chr5.1:15177169-15177188 | None:intergenic | 40.0% |
| ! | GCTCCTTCTCCTTCTATTTT+CGG | + | chr5.1:15176576-15176595 | None:intergenic | 40.0% |
| !! | AAAGAAGTCTGCGATTTGGT+GGG | - | chr5.1:15176345-15176364 | MS.gene86527:CDS | 40.0% |
| !! | AATTGAACTGGTCTTGCCAT+TGG | + | chr5.1:15177416-15177435 | None:intergenic | 40.0% |
| !! | ATTGAACTGGTCTTGCCATT+GGG | + | chr5.1:15177415-15177434 | None:intergenic | 40.0% |
| AGCTCAATGGATGAGAGAAG+TGG | + | chr5.1:15177218-15177237 | None:intergenic | 45.0% | |
| CCACCGAAAATAGAAGGAGA+AGG | - | chr5.1:15176570-15176589 | MS.gene86527:intron | 45.0% | |
| CCTCCACCAACATATGACTT+TGG | + | chr5.1:15176545-15176564 | None:intergenic | 45.0% | |
| CTGTGAGGGTGAAAGACAAA+TGG | - | chr5.1:15177477-15177496 | MS.gene86527:intron | 45.0% | |
| GATAGTGTCAGAGAGACTGT+TGG | + | chr5.1:15177069-15177088 | None:intergenic | 45.0% | |
| GATGGTTATCGTTGATGCCA+AGG | - | chr5.1:15177532-15177551 | MS.gene86527:intron | 45.0% | |
| GGAAGAAGGGAAAGTAAGAG+AGG | - | chr5.1:15177932-15177951 | MS.gene86527:intron | 45.0% | |
| GTTAACACTACTCTCAGACG+TGG | + | chr5.1:15176755-15176774 | None:intergenic | 45.0% | |
| TGTTCTCAGAGCAATCCCAA+TGG | - | chr5.1:15177397-15177416 | MS.gene86527:intron | 45.0% | |
| ! | ATCTGAAGCCACCAGTGTTA+TGG | + | chr5.1:15178019-15178038 | None:intergenic | 45.0% |
| ! | ATTTCTGGAAGCTGACTGTG+AGG | - | chr5.1:15177462-15177481 | MS.gene86527:intron | 45.0% |
| ! | CCAAAGTCATATGTTGGTGG+AGG | - | chr5.1:15176542-15176561 | MS.gene86527:intron | 45.0% |
| ! | CCTTCTCCTTCTATTTTCGG+TGG | + | chr5.1:15176573-15176592 | None:intergenic | 45.0% |
| ! | GAAAGAAGTCTGCGATTTGG+TGG | - | chr5.1:15176344-15176363 | MS.gene86527:CDS | 45.0% |
| ! | GGCGGCTAGAGTTTGTTTAA+GGG | - | chr5.1:15176596-15176615 | MS.gene86527:intron | 45.0% |
| ! | GGTTGTTGTTAAGGATGGGA+GGG | - | chr5.1:15177499-15177518 | MS.gene86527:intron | 45.0% |
| ! | GTAGATGTGGTGTGAGTTGA+AGG | - | chr5.1:15176684-15176703 | MS.gene86527:intron | 45.0% |
| ! | TTTCTGGAAGCTGACTGTGA+GGG | - | chr5.1:15177463-15177482 | MS.gene86527:intron | 45.0% |
| !! | ATAATAAATAAATAAATATG+TGG | - | chr5.1:15176718-15176737 | MS.gene86527:intron | 5.0% |
| !! | TAATAAATAAATAAATATGT+GGG | - | chr5.1:15176719-15176738 | MS.gene86527:intron | 5.0% |
| AATAGAAGGAGAAGGAGCGG+CGG | - | chr5.1:15176578-15176597 | MS.gene86527:intron | 50.0% | |
| AGGGAAGAGAGAGCTTTCTC+TGG | - | chr5.1:15176615-15176634 | MS.gene86527:intron | 50.0% | |
| GGATGGCCTAAAGAGCTCAA+TGG | + | chr5.1:15177231-15177250 | None:intergenic | 50.0% | |
| ! | CGGCGGCTAGAGTTTGTTTA+AGG | - | chr5.1:15176595-15176614 | MS.gene86527:intron | 50.0% |
| ! | GAAGGGTATGGGCAATGCAA+TGG | + | chr5.1:15177158-15177177 | None:intergenic | 50.0% |
| ! | GATCTACGGTGTCAACCATG+AGG | - | chr5.1:15176448-15176467 | MS.gene86527:intron | 50.0% |
| ! | GGGTTGTTGTTAAGGATGGG+AGG | - | chr5.1:15177498-15177517 | MS.gene86527:intron | 50.0% |
| ! | GTCATATGTTGGTGGAGGCG+CGG | - | chr5.1:15176547-15176566 | MS.gene86527:intron | 55.0% |
| !! | TAAGGATGGGAGGGAGCACT+TGG | - | chr5.1:15177508-15177527 | MS.gene86527:intron | 55.0% |
| GCGCGGCCACCGAAAATAGA+AGG | - | chr5.1:15176564-15176583 | MS.gene86527:intron | 60.0% | |
| GGTGGCTTCAGATTCCGTCG+CGG | - | chr5.1:15178026-15178045 | MS.gene86527:intron | 60.0% | |
| !! | TGGGAGGGAGCACTTGGAGA+TGG | - | chr5.1:15177514-15177533 | MS.gene86527:intron | 60.0% |
| GGCTTCAGATTCCGTCGCGG+TGG | - | chr5.1:15178029-15178048 | MS.gene86527:intron | 65.0% | |
| GATTCCGTCGCGGTGGTCGC+CGG | - | chr5.1:15178036-15178055 | MS.gene86527:intron | 70.0% | |
| TTCGCCGGCGACCACCGCGA+CGG | + | chr5.1:15178043-15178062 | None:intergenic | 75.0% | |
| ! | GTCGCGGTGGTCGCCGGCGA+AGG | - | chr5.1:15178042-15178061 | MS.gene86527:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 15175748 | 15178101 | 15175748 | ID=MS.gene86527 |
| chr5.1 | mRNA | 15175748 | 15178101 | 15175748 | ID=MS.gene86527.t1;Parent=MS.gene86527 |
| chr5.1 | exon | 15178091 | 15178101 | 15178091 | ID=MS.gene86527.t1.exon1;Parent=MS.gene86527.t1 |
| chr5.1 | CDS | 15178091 | 15178101 | 15178091 | ID=cds.MS.gene86527.t1;Parent=MS.gene86527.t1 |
| chr5.1 | exon | 15177989 | 15177997 | 15177989 | ID=MS.gene86527.t1.exon2;Parent=MS.gene86527.t1 |
| chr5.1 | CDS | 15177989 | 15177997 | 15177989 | ID=cds.MS.gene86527.t1;Parent=MS.gene86527.t1 |
| chr5.1 | exon | 15176296 | 15176443 | 15176296 | ID=MS.gene86527.t1.exon3;Parent=MS.gene86527.t1 |
| chr5.1 | CDS | 15176296 | 15176443 | 15176296 | ID=cds.MS.gene86527.t1;Parent=MS.gene86527.t1 |
| chr5.1 | exon | 15175748 | 15175834 | 15175748 | ID=MS.gene86527.t1.exon4;Parent=MS.gene86527.t1 |
| chr5.1 | CDS | 15175748 | 15175834 | 15175748 | ID=cds.MS.gene86527.t1;Parent=MS.gene86527.t1 |
| Gene Sequence |
| Protein sequence |
