AlfalfaGEDB | MS.gene056390

M. sativa cultivar XinJiangDaYe / MS.gene056390

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0008233 GO:0008236 GO:0016021 GO:0016787 GO:0016825 GO:0017171 GO:0031224 GO:0070011 GO:0110165 GO:0140096
PFAM: PF01694.25

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056390.t1	XP_013456312.1	98.5	201	3	0	1	201	71	271	1.80E-101	378.6

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056390.t1	Q9M1B5	82.1	201	34	1	1	201	71	269	6.8e-86	318.2

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056390.t1	A0A072UMR9	98.5	201	3	0	1	201	71	271	1.3e-101	378.6

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene056390	0.830832	2.35E-55	-1.69E-46
MS.gene049350	MS.gene056390	0.802048	6.75E-49	-1.69E-46
MS.gene050654	MS.gene056390	0.830054	3.64E-55	-1.69E-46
MS.gene050838	MS.gene056390	0.804263	2.35E-49	-1.69E-46
MS.gene051102	MS.gene056390	0.811638	6.33E-51	-1.69E-46
MS.gene051975	MS.gene056390	0.804813	1.80E-49	-1.69E-46
MS.gene052307	MS.gene056390	0.814466	1.52E-51	-1.69E-46
MS.gene052335	MS.gene056390	0.80074	1.25E-48	-1.69E-46
MS.gene052463	MS.gene056390	0.836129	1.12E-56	-1.69E-46
MS.gene052609	MS.gene056390	0.810965	8.87E-51	-1.69E-46

Showing 1 to 10 of 242 entries

Previous1 2 3 4 5…25Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056390.t1	MTR_4g067340	98.507	201	3	0	1	201	71	271	3.05e-140	392

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056390.t1	AT3G59520	82.090	201	34	1	1	201	71	269	1.17e-114	327

Showing 1 to 1 of 1 entries

Previous1Next

Find 42 sgRNAs with CRISPR-Local

Find 54 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCCAAAGAGCTCCAACT+TGG	0.500176	4.1:+33965563	None:intergenic
AAGAACAATCCAACCCAATA+AGG	0.380469	4.1:+33965383	None:intergenic
AAGAGCTCCAACTTGGAAGA+AGG	0.537007	4.1:+33965570	None:intergenic
AATCGCACAGACGGTAATGA+AGG	0.514515	4.1:+33965288	None:intergenic
ACAATGTCAACATTTCCATC+TGG	0.497361	4.1:+33965222	None:intergenic
ATAGCTTGGGGTTTGATTCA+TGG	0.377631	4.1:-33965429	MS.gene056390:CDS
ATGAGTGCACTTTGGAGTCT+TGG	0.411154	4.1:-33965801	MS.gene056390:CDS
CAATTGGATCATGTTGGCCT+TGG	0.510981	4.1:-33965768	MS.gene056390:CDS
CACAGACGGTAATGAAGGAT+CGG	0.600871	4.1:+33965293	None:intergenic
CACTTCGATTATTGTTCCTC+AGG	0.392946	4.1:-33965496	MS.gene056390:CDS

Showing 1 to 10 of 42 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GTGAAAATAAGCGATTCAAA+CGG	+	chr4.1:33965506-33965525	None:intergenic	30.0%
AAGAACAATCCAACCCAATA+AGG	+	chr4.1:33965639-33965658	None:intergenic	35.0%
ACAATGTCAACATTTCCATC+TGG	+	chr4.1:33965800-33965819	None:intergenic	35.0%
TCAAACGGAGCAAAACTAAT+AGG	+	chr4.1:33965491-33965510	None:intergenic	35.0%
TCATGGGATGACTAATTACT+GGG	-	chr4.1:33965607-33965626	MS.gene056390:CDS	35.0%
TGTTGGATATGCTATAGCTT+GGG	-	chr4.1:33965577-33965596	MS.gene056390:CDS	35.0%
TTCATGGGATGACTAATTAC+TGG	-	chr4.1:33965606-33965625	MS.gene056390:CDS	35.0%
TTGTTGGATATGCTATAGCT+TGG	-	chr4.1:33965576-33965595	MS.gene056390:CDS	35.0%
TTTGCAGTATACACTTGTGT+TGG	-	chr4.1:33965286-33965305	MS.gene056390:CDS	35.0%
AAATCCAAAGAGCTCCAACT+TGG	+	chr4.1:33965459-33965478	None:intergenic	40.0%

Showing 1 to 10 of 54 entries

Previous1 2 3 4 5 6Next

Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	33965218	33965823	33965218	ID=MS.gene056390
chr4.1	mRNA	33965218	33965823	33965218	ID=MS.gene056390.t1;Parent=MS.gene056390
chr4.1	exon	33965218	33965823	33965218	ID=MS.gene056390.t1.exon1;Parent=MS.gene056390.t1
chr4.1	CDS	33965218	33965823	33965218	ID=cds.MS.gene056390.t1;Parent=MS.gene056390.t1

Gene Sequence

>MS.gene056390

ATGAGTGCACTTTGGAGTCTTGGGGTTGTAGAGCAATTGGATCATGTTGGCCTTGGTGTCGAGTATTATTTGCAGTATACACTTGTGTTGGTGGTTGTATCCGGGGTTTTGGTTCTGGCAATGTATCACTTGTTGATTCAAAGATTCAAGGTTGAGTATTTTCGTCGAGTGACGGCTGTTGGTTATTCGTGTGTTGTTTTTGGTTGGATGACGATTCTTTCTGTGAAGCAACCTTCTTCCAAGTTGGAGCTCTTTGGATTTCTTTCGCTTCCTATTAGTTTTGCTCCGTTTGAATCGCTTATTTTCACTTCGATTATTGTTCCTCAGGCAAGTTTTATTGGACATTTATCTGGGATTGTTGTTGGATATGCTATAGCTTGGGGTTTGATTCATGGGATGACTAATTACTGGGCACTTACCTTATTGGGTTGGATTGTTCTTGTCTTTGTTTTGAGTTTGAAGAAATCTGGTGCACTTGACATAAGCTTCATTGAGATTGAATCTGTTACCGATCCTTCATTACCGTCTGTGCGATTTTTGGGATCTAGCAATGGCAGAACCCTGCAGATGAGTGCATTGCCAGATGGAAATGTTGACATTGTCTAA

Protein sequence

>MS.gene056390.t1

MSALWSLGVVEQLDHVGLGVEYYLQYTLVLVVVSGVLVLAMYHLLIQRFKVEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLELFGFLSLPISFAPFESLIFTSIIVPQASFIGHLSGIVVGYAIAWGLIHGMTNYWALTLLGWIVLVFVLSLKKSGALDISFIEIESVTDPSLPSVRFLGSSNGRTLQMSALPDGNVDIV