Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86552.t1 | XP_003612356.1 | 99.2 | 388 | 3 | 0 | 4 | 391 | 3 | 390 | 8.90E-223 | 782.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86552.t1 | Q42807 | 91.2 | 388 | 32 | 1 | 4 | 391 | 3 | 388 | 6.9e-208 | 724.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86552.t1 | Q4U601 | 99.2 | 388 | 3 | 0 | 4 | 391 | 3 | 390 | 6.4e-223 | 782.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene86552 | MS.gene026689 | PPI |
| MS.gene054155 | MS.gene86552 | PPI |
| MS.gene86552 | MS.gene32324 | PPI |
| MS.gene31844 | MS.gene86552 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86552.t1 | MTR_5g024130 | 99.227 | 388 | 3 | 0 | 4 | 391 | 3 | 390 | 0.0 | 804 |
| MS.gene86552.t1 | MTR_4g087440 | 98.196 | 388 | 7 | 0 | 4 | 391 | 3 | 390 | 0.0 | 795 |
| MS.gene86552.t1 | MTR_1g029150 | 72.024 | 336 | 90 | 2 | 60 | 391 | 52 | 387 | 0.0 | 520 |
| MS.gene86552.t1 | MTR_3g090100 | 64.286 | 350 | 113 | 4 | 46 | 391 | 22 | 363 | 1.13e-166 | 473 |
| MS.gene86552.t1 | MTR_3g089025 | 65.476 | 336 | 113 | 2 | 58 | 391 | 32 | 366 | 8.66e-166 | 471 |
| MS.gene86552.t1 | MTR_3g090020 | 63.793 | 348 | 118 | 3 | 46 | 391 | 22 | 363 | 3.41e-164 | 467 |
| MS.gene86552.t1 | MTR_3g090010 | 65.868 | 334 | 111 | 2 | 60 | 391 | 35 | 367 | 8.54e-163 | 463 |
| MS.gene86552.t1 | MTR_3g090110 | 40.171 | 117 | 47 | 1 | 238 | 354 | 2 | 95 | 1.73e-21 | 89.4 |
| MS.gene86552.t1 | MTR_3g089980 | 47.423 | 97 | 38 | 1 | 258 | 354 | 7 | 90 | 1.80e-21 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86552.t1 | AT2G43710 | 81.934 | 393 | 66 | 2 | 3 | 391 | 7 | 398 | 0.0 | 667 |
| MS.gene86552.t1 | AT2G43710 | 81.679 | 393 | 67 | 2 | 3 | 391 | 7 | 398 | 0.0 | 665 |
| MS.gene86552.t1 | AT3G02630 | 80.926 | 367 | 69 | 1 | 25 | 390 | 26 | 392 | 0.0 | 634 |
| MS.gene86552.t1 | AT5G16240 | 77.437 | 359 | 78 | 2 | 34 | 391 | 35 | 391 | 0.0 | 592 |
| MS.gene86552.t1 | AT3G02610 | 68.342 | 398 | 111 | 6 | 3 | 391 | 19 | 410 | 0.0 | 547 |
| MS.gene86552.t1 | AT3G02610 | 68.342 | 398 | 111 | 6 | 3 | 391 | 17 | 408 | 0.0 | 546 |
| MS.gene86552.t1 | AT5G16230 | 65.578 | 398 | 132 | 4 | 1 | 393 | 3 | 400 | 0.0 | 534 |
| MS.gene86552.t1 | AT3G02620 | 68.351 | 376 | 107 | 4 | 22 | 391 | 34 | 403 | 0.0 | 533 |
| MS.gene86552.t1 | AT3G02620 | 68.351 | 376 | 107 | 4 | 22 | 391 | 31 | 400 | 0.0 | 533 |
| MS.gene86552.t1 | AT1G43800 | 65.885 | 384 | 120 | 4 | 15 | 391 | 9 | 388 | 0.0 | 518 |
| MS.gene86552.t1 | AT5G16230 | 73.765 | 324 | 81 | 3 | 74 | 393 | 1 | 324 | 7.70e-178 | 500 |
| MS.gene86552.t1 | AT3G02620 | 73.148 | 324 | 81 | 3 | 74 | 391 | 1 | 324 | 1.01e-176 | 497 |
Find 148 sgRNAs with CRISPR-Local
Find 307 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGAAAATTTCAATCTTT+TGG | 0.153941 | 5.1:+14812433 | None:intergenic |
| AACACTTCTCCACGGGTTTA+AGG | 0.177206 | 5.1:+14812373 | None:intergenic |
| TCCTCCAGCCTTCTGATTCT+TGG | 0.181095 | 5.1:+14811226 | None:intergenic |
| GCCCTACTCCCTGGGCTATT+TGG | 0.216121 | 5.1:-14812152 | MS.gene86552:CDS |
| GGTGGAAGCCATGAGGAATT+TGG | 0.217183 | 5.1:+14813665 | None:intergenic |
| GCCGACATAACCGGACTTTC+AGG | 0.282345 | 5.1:-14811289 | MS.gene86552:CDS |
| CATTCAGTTGGATTCATGAT+AGG | 0.310680 | 5.1:-14811165 | MS.gene86552:CDS |
| TACTTGAACATGCACTTCTC+TGG | 0.313192 | 5.1:+14812473 | None:intergenic |
| GGGTTTAAGGTGAGTCAATA+AGG | 0.313316 | 5.1:+14812386 | None:intergenic |
| CCAAACTATGCTTAATACTT+TGG | 0.328282 | 5.1:-14812202 | MS.gene86552:CDS |
| TTAAGCATAGTTTGGTAAGT+AGG | 0.345744 | 5.1:+14812210 | None:intergenic |
| AGATGACTACTTTGTTGTTC+TGG | 0.348048 | 5.1:-14812262 | MS.gene86552:CDS |
| AATCCAACTGAATGCAAGTT+TGG | 0.355409 | 5.1:+14811174 | None:intergenic |
| CCAAAGTATTAAGCATAGTT+TGG | 0.366292 | 5.1:+14812202 | None:intergenic |
| CTGCCTGATCCTTCCTCAGA+TGG | 0.373394 | 5.1:-14812333 | MS.gene86552:CDS |
| GCGTGCACAGCTGTGGATGC+AGG | 0.375281 | 5.1:-14809832 | MS.gene86552:CDS |
| TGTTGTTCTGGTTGGAGATA+TGG | 0.377751 | 5.1:-14812250 | MS.gene86552:CDS |
| GTGGAAGCCATGAGGAATTT+GGG | 0.381387 | 5.1:+14813666 | None:intergenic |
| AACAAGTATCTTTACTTGTC+CGG | 0.381953 | 5.1:-14812084 | MS.gene86552:CDS |
| GATATACTTGAGTTTCTAGT+TGG | 0.386260 | 5.1:-14811325 | MS.gene86552:CDS |
| AAGACAATTCAGTACTTGAT+TGG | 0.388415 | 5.1:-14812036 | MS.gene86552:CDS |
| TCTGTTAAGCATAAGCAATC+AGG | 0.396112 | 5.1:-14811016 | MS.gene86552:intron |
| AGGATGTTTGTGTAGGGAAA+GGG | 0.397504 | 5.1:+14813724 | None:intergenic |
| CAGCCTCCGGCGTGGAGGCA+AGG | 0.399036 | 5.1:-14809681 | MS.gene86552:CDS |
| AAAGATAGTGGAAAAGCTAT+TGG | 0.403395 | 5.1:-14811509 | MS.gene86552:CDS |
| CTCCTTCTCTCTCCCTCAAA+TGG | 0.406762 | 5.1:-14813703 | MS.gene86552:CDS |
| TTTCAAATCGTTGGACGGTT+GGG | 0.409114 | 5.1:-14812418 | MS.gene86552:CDS |
| ATTCAGTACTTGATTGGCTC+TGG | 0.422057 | 5.1:-14812030 | MS.gene86552:CDS |
| ATGGCTTCCACCCTCCGTTC+TGG | 0.424747 | 5.1:-14813654 | MS.gene86552:CDS |
| CATCCAAACTTGCATTCAGT+TGG | 0.428488 | 5.1:-14811177 | MS.gene86552:CDS |
| GACGGGGTTCGTGATGAAAC+AGG | 0.435583 | 5.1:-14812180 | MS.gene86552:CDS |
| TGGAAGGTGGCCGACATAAC+CGG | 0.441892 | 5.1:-14811298 | MS.gene86552:CDS |
| TCCAAATAGCCCAGGGAGTA+GGG | 0.449927 | 5.1:+14812151 | None:intergenic |
| AGAACAACAAAGTAGTCATC+TGG | 0.454468 | 5.1:+14812264 | None:intergenic |
| TGTGTTTCCATGCGATATAA+AGG | 0.456327 | 5.1:+14811624 | None:intergenic |
| CAGGTGCCAGCCCTACTCCC+TGG | 0.456573 | 5.1:-14812161 | MS.gene86552:CDS |
| CAGCAGAATAGTTATCAAAC+AGG | 0.457192 | 5.1:+14811389 | None:intergenic |
| AGAAGGAGGATGTTTGTGTA+GGG | 0.463532 | 5.1:+14813718 | None:intergenic |
| TCCAGCCTTCTGATTCTTGG+TGG | 0.465016 | 5.1:+14811229 | None:intergenic |
| TCGTCCCTCACCTGAAAGTC+CGG | 0.465890 | 5.1:+14811279 | None:intergenic |
| AGCCTCCGGCGTGGAGGCAA+GGG | 0.471797 | 5.1:-14809680 | MS.gene86552:CDS |
| TCTGCTGTTGCCCAGCGCAT+TGG | 0.472536 | 5.1:-14811373 | MS.gene86552:CDS |
| ACCACGTTCCTTAGCAAGCC+TGG | 0.476409 | 5.1:+14811600 | None:intergenic |
| CAGTGTAGACTCCAATGCGC+TGG | 0.478141 | 5.1:+14811362 | None:intergenic |
| GTGTAGATAAAGCCAAGGTA+AGG | 0.480370 | 5.1:+14811667 | None:intergenic |
| GGATGTTTGTGTAGGGAAAG+GGG | 0.481333 | 5.1:+14813725 | None:intergenic |
| TATCGCATGGAAACACAGCC+AGG | 0.484282 | 5.1:-14811618 | MS.gene86552:CDS |
| GATCTGAGACTGGCCATTTG+AGG | 0.486343 | 5.1:+14813690 | None:intergenic |
| GACTACTTTGTTGTTCTGGT+TGG | 0.487848 | 5.1:-14812258 | MS.gene86552:CDS |
| CTATGCTTAATACTTTGGAC+GGG | 0.489694 | 5.1:-14812197 | MS.gene86552:CDS |
| AAGGCACAGGAGTATGTTTG+TGG | 0.492271 | 5.1:-14811256 | MS.gene86552:CDS |
| GAGAAGGAGGATGTTTGTGT+AGG | 0.492943 | 5.1:+14813717 | None:intergenic |
| CAGGCTCCGACGCAGAGGTA+AGG | 0.502239 | 5.1:-14809813 | MS.gene86552:CDS |
| CGTCTCGGCCATCATACATC+AGG | 0.503492 | 5.1:+14811416 | None:intergenic |
| AAAGCAATAACTGTTCCATC+AGG | 0.503808 | 5.1:+14811478 | None:intergenic |
| ATCGTTGGACGGTTGGGCTG+AGG | 0.504685 | 5.1:-14812412 | MS.gene86552:CDS |
| ATATACTTGAGTTTCTAGTT+GGG | 0.505345 | 5.1:-14811324 | MS.gene86552:CDS |
| TATCAAACAGGTTGTCGTCT+CGG | 0.505744 | 5.1:+14811401 | None:intergenic |
| GACTGCTTACACAAAGATAG+TGG | 0.506240 | 5.1:-14811521 | MS.gene86552:CDS |
| ATCTGAGACTGGCCATTTGA+GGG | 0.507077 | 5.1:+14813691 | None:intergenic |
| CCATCATACATCAGGTGTGC+TGG | 0.507354 | 5.1:+14811424 | None:intergenic |
| ATTCAGTTGGATTCATGATA+GGG | 0.509293 | 5.1:-14811164 | MS.gene86552:CDS |
| AATCCATCTGAGGAAGGATC+AGG | 0.510617 | 5.1:+14812330 | None:intergenic |
| GTTTCTAGTTGGGAGGTGGA+AGG | 0.511600 | 5.1:-14811314 | MS.gene86552:CDS |
| TTGAGTTTCTAGTTGGGAGG+TGG | 0.512817 | 5.1:-14811318 | MS.gene86552:CDS |
| TGCCCTTGTCCAAATAGCCC+AGG | 0.513839 | 5.1:+14812143 | None:intergenic |
| ACTATGCTTAATACTTTGGA+CGG | 0.515306 | 5.1:-14812198 | MS.gene86552:CDS |
| GTCCAAATAGCCCAGGGAGT+AGG | 0.517699 | 5.1:+14812150 | None:intergenic |
| CTGTTAAGCATAAGCAATCA+GGG | 0.518257 | 5.1:-14811015 | MS.gene86552:intron |
| AAGCTGCTTCACAAGGTATG+AGG | 0.519635 | 5.1:-14809857 | MS.gene86552:CDS |
| CTCCCTGGGCTATTTGGACA+AGG | 0.522312 | 5.1:-14812146 | MS.gene86552:CDS |
| GGAACGTGGTGATTTGAAGT+TGG | 0.522918 | 5.1:-14811587 | MS.gene86552:CDS |
| AGGTGCCAGCCCTACTCCCT+GGG | 0.525825 | 5.1:-14812160 | MS.gene86552:CDS |
| CTACACTTCATTTCAAGAGA+GGG | 0.526696 | 5.1:-14811650 | MS.gene86552:CDS |
| AATAGCCCAGGGAGTAGGGC+TGG | 0.527579 | 5.1:+14812155 | None:intergenic |
| GGAGAAGTGTTGGCAACCAC+AGG | 0.529444 | 5.1:-14812361 | MS.gene86552:CDS |
| GTACTTGATTGGCTCTGGAA+TGG | 0.532321 | 5.1:-14812025 | MS.gene86552:intron |
| GGGCTATTTGGACAAGGGCA+TGG | 0.532896 | 5.1:-14812140 | MS.gene86552:CDS |
| TTGTCTCATATCAACACGTC+CGG | 0.538054 | 5.1:+14812065 | None:intergenic |
| ACTTGAACATGCACTTCTCT+GGG | 0.540588 | 5.1:+14812474 | None:intergenic |
| GCCACCAAGAATCAGAAGGC+TGG | 0.541195 | 5.1:-14811230 | MS.gene86552:CDS |
| GGTGGCAGCCTCCGGCGTGG+AGG | 0.545212 | 5.1:-14809686 | MS.gene86552:intron |
| GGTTGCCAACACTTCTCCAC+GGG | 0.546156 | 5.1:+14812366 | None:intergenic |
| TGGTTGCCAACACTTCTCCA+CGG | 0.546764 | 5.1:+14812365 | None:intergenic |
| AGGTGAGGGACGAAAGGCAC+AGG | 0.547789 | 5.1:-14811269 | MS.gene86552:CDS |
| ACCTGAAAGTCCGGTTATGT+CGG | 0.554587 | 5.1:+14811288 | None:intergenic |
| AGCCCTTGCCTCCACGCCGG+AGG | 0.554878 | 5.1:+14809678 | None:intergenic |
| TTGAAGTTGGCTCAGATCTG+TGG | 0.557237 | 5.1:-14811574 | MS.gene86552:CDS |
| TACTTGAGTTTCTAGTTGGG+AGG | 0.557352 | 5.1:-14811321 | MS.gene86552:CDS |
| AGGGCGACCTTTATATCGCA+TGG | 0.560815 | 5.1:-14811631 | MS.gene86552:CDS |
| GAGGATGTTTGTGTAGGGAA+AGG | 0.563996 | 5.1:+14813723 | None:intergenic |
| CAGATCTCCCAAATTCCTCA+TGG | 0.570557 | 5.1:-14813673 | MS.gene86552:CDS |
| AGTGTAGACTCCAATGCGCT+GGG | 0.573443 | 5.1:+14811363 | None:intergenic |
| AAGTGAAGGAACTGAGAGAG+AGG | 0.573671 | 5.1:-14812299 | MS.gene86552:CDS |
| AGGCACAGGAGTATGTTTGT+GGG | 0.574102 | 5.1:-14811255 | MS.gene86552:CDS |
| AAGTATATCAGCATAGTCCT+TGG | 0.575108 | 5.1:+14811339 | None:intergenic |
| GAATTTGGGAGATCTGAGAC+TGG | 0.578274 | 5.1:+14813680 | None:intergenic |
| TCTACACTTCATTTCAAGAG+AGG | 0.581234 | 5.1:-14811651 | MS.gene86552:CDS |
| TCTAGTTGGGAGGTGGAAGG+TGG | 0.584509 | 5.1:-14811311 | MS.gene86552:CDS |
| TAATTCTAAGCTGCTTCACA+AGG | 0.588919 | 5.1:-14809864 | MS.gene86552:CDS |
| GGCCATTTGAGGGAGAGAGA+AGG | 0.589016 | 5.1:+14813701 | None:intergenic |
| CATTTGAGGGAGAGAGAAGG+AGG | 0.590783 | 5.1:+14813704 | None:intergenic |
| GAGAGCTTCAGCAAGAGCAA+AGG | 0.595934 | 5.1:-14811203 | MS.gene86552:CDS |
| AAACACAGCCAGGCTTGCTA+AGG | 0.597013 | 5.1:-14811608 | MS.gene86552:CDS |
| TGTAGATAAAGCCAAGGTAA+GGG | 0.598444 | 5.1:+14811668 | None:intergenic |
| GCTCCGACGCAGAGGTAAGG+TGG | 0.601040 | 5.1:-14809810 | MS.gene86552:CDS |
| TTAAACCCGTGGAGAAGTGT+TGG | 0.603294 | 5.1:-14812371 | MS.gene86552:CDS |
| AATTTGATGGATAGGATCCT+CGG | 0.609645 | 5.1:-14811702 | MS.gene86552:intron |
| ACTTTCAGGTGAGGGACGAA+AGG | 0.610348 | 5.1:-14811275 | MS.gene86552:CDS |
| AGAAGCCCTTGCCTCCACGC+CGG | 0.611961 | 5.1:+14809675 | None:intergenic |
| CCAGCACACCTGATGTATGA+TGG | 0.611997 | 5.1:-14811424 | MS.gene86552:CDS |
| CTATTGGAGATTGATCCTGA+TGG | 0.612852 | 5.1:-14811493 | MS.gene86552:CDS |
| TCTTCGAATCCATCTGAGGA+AGG | 0.617698 | 5.1:+14812324 | None:intergenic |
| GCCCTTGTCCAAATAGCCCA+GGG | 0.621824 | 5.1:+14812144 | None:intergenic |
| TATGGTGGCAGCCTCCGGCG+TGG | 0.622758 | 5.1:-14809689 | MS.gene86552:intron |
| AGTGAAGGAACTGAGAGAGA+GGG | 0.623958 | 5.1:-14812298 | MS.gene86552:CDS |
| ACTGAGAATAGCCCTTACCT+TGG | 0.627826 | 5.1:-14811679 | MS.gene86552:CDS |
| TAGAAATATATACTGGAGCA+CGG | 0.627906 | 5.1:+14809786 | None:intergenic |
| TGACTTGGAACCAGAACGGA+GGG | 0.629360 | 5.1:+14813644 | None:intergenic |
| ATGAAGTGTAGATAAAGCCA+AGG | 0.630791 | 5.1:+14811662 | None:intergenic |
| TTGCTCTTCGAATCCATCTG+AGG | 0.631251 | 5.1:+14812320 | None:intergenic |
| TGAGGCAGCGTGCACAGCTG+TGG | 0.632974 | 5.1:-14809839 | MS.gene86552:CDS |
| TCTTTGTGTAAGCAGTCTCA+TGG | 0.635579 | 5.1:+14811527 | None:intergenic |
| CTTGGAACCAGAACGGAGGG+TGG | 0.638218 | 5.1:+14813647 | None:intergenic |
| TGGATTCGAAGAGCAAGTGA+AGG | 0.638840 | 5.1:-14812313 | MS.gene86552:CDS |
| CATTGGAGTCTACACTGCCA+AGG | 0.641019 | 5.1:-14811356 | MS.gene86552:CDS |
| GGTTGCCACCAAGAATCAGA+AGG | 0.645168 | 5.1:-14811234 | MS.gene86552:CDS |
| GCCAGGCTTGCTAAGGAACG+TGG | 0.645565 | 5.1:-14811601 | MS.gene86552:CDS |
| AGAGGTTGAAAATATTAACA+AGG | 0.647622 | 5.1:-14812508 | MS.gene86552:CDS |
| TATGCTTAATACTTTGGACG+GGG | 0.647926 | 5.1:-14812196 | MS.gene86552:CDS |
| ATTGACTCACCTTAAACCCG+TGG | 0.649070 | 5.1:-14812382 | MS.gene86552:CDS |
| GGATGCAGGCTCCGACGCAG+AGG | 0.653972 | 5.1:-14809818 | MS.gene86552:CDS |
| GGACCACCTTACCTCTGCGT+CGG | 0.656178 | 5.1:+14809807 | None:intergenic |
| GGGAAAGGGGTTGCTCTGAG+AGG | 0.657951 | 5.1:+14813738 | None:intergenic |
| TCCCTGGGCTATTTGGACAA+GGG | 0.661918 | 5.1:-14812145 | MS.gene86552:CDS |
| ATAACCGGACTTTCAGGTGA+GGG | 0.664241 | 5.1:-14811283 | MS.gene86552:CDS |
| ACCAAGAATCAGAAGGCTGG+AGG | 0.675099 | 5.1:-14811227 | MS.gene86552:CDS |
| TTACTGACTTGGAACCAGAA+CGG | 0.677723 | 5.1:+14813640 | None:intergenic |
| TAAGGGCTATTCTCAGTCCG+AGG | 0.684437 | 5.1:+14811685 | None:intergenic |
| AGCAGCTTAGAATTAAAACA+TGG | 0.685073 | 5.1:+14809872 | None:intergenic |
| CATAACCGGACTTTCAGGTG+AGG | 0.689606 | 5.1:-14811284 | MS.gene86552:CDS |
| GTTAAGCATAAGCAATCAGG+GGG | 0.690132 | 5.1:-14811013 | MS.gene86552:intron |
| AACGGAGGGTGGAAGCCATG+AGG | 0.693929 | 5.1:+14813658 | None:intergenic |
| TGTTAAGCATAAGCAATCAG+GGG | 0.694067 | 5.1:-14811014 | MS.gene86552:intron |
| TGAACATGCACTTCTCTGGG+AGG | 0.699562 | 5.1:+14812477 | None:intergenic |
| CTGACTTGGAACCAGAACGG+AGG | 0.718153 | 5.1:+14813643 | None:intergenic |
| GGATCAGGCAGAAAATCCTG+TGG | 0.729854 | 5.1:+14812345 | None:intergenic |
| ACAGCTGAAGAAAATAGACA+CGG | 0.759947 | 5.1:-14812117 | MS.gene86552:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATCATTATTTTTTTAAC+AGG | + | chr5.1:14810796-14810815 | None:intergenic | 10.0% |
| !!! | GTATAATCAATTATAAATTT+TGG | - | chr5.1:14810269-14810288 | MS.gene86552:intron | 10.0% |
| !! | AATTTATTATGAAACTAACT+AGG | + | chr5.1:14811424-14811443 | None:intergenic | 15.0% |
| !! | ATAATGATATTAATACAGTT+TGG | - | chr5.1:14810805-14810824 | MS.gene86552:intron | 15.0% |
| !! | GATAAAGAAAATTTAGTTAA+TGG | - | chr5.1:14812525-14812544 | MS.gene86552:intron | 15.0% |
| !!! | ATTTGAAAATTTCAATCTTT+TGG | + | chr5.1:14810987-14811006 | None:intergenic | 15.0% |
| !!! | TTTGAAAATTTCAATCTTTT+GGG | + | chr5.1:14810986-14811005 | None:intergenic | 15.0% |
| !! | AAAAATACTGAACTTAATTC+TGG | - | chr5.1:14810490-14810509 | MS.gene86552:intron | 20.0% |
| !! | AAATTCCGAAATTGAATTAA+TGG | + | chr5.1:14810210-14810229 | None:intergenic | 20.0% |
| !! | AAGATGAAATGAAAAAGTAA+GGG | + | chr5.1:14809809-14809828 | None:intergenic | 20.0% |
| !! | CAATCAAAAAAACAAAACTA+AGG | + | chr5.1:14810148-14810167 | None:intergenic | 20.0% |
| !! | TATCTTGACATTTGTATAAA+TGG | - | chr5.1:14813470-14813489 | MS.gene86552:intron | 20.0% |
| !! | TATTAATCAACAATTCACAA+AGG | - | chr5.1:14812790-14812809 | MS.gene86552:intron | 20.0% |
| !! | TTTGTGATATGATATTGAAA+TGG | - | chr5.1:14809891-14809910 | MS.gene86552:intron | 20.0% |
| !!! | GTTTTTTTGATTGTATTCTA+TGG | - | chr5.1:14810155-14810174 | MS.gene86552:intron | 20.0% |
| !!! | TATAAATTTTGGAACTTGTT+GGG | - | chr5.1:14810280-14810299 | MS.gene86552:intron | 20.0% |
| !!! | TGTTTATATCTCTCTAATTT+TGG | - | chr5.1:14811684-14811703 | MS.gene86552:CDS | 20.0% |
| !!! | TTATAAATTTTGGAACTTGT+TGG | - | chr5.1:14810279-14810298 | MS.gene86552:intron | 20.0% |
| !!! | TTGAAAATTTCAATCTTTTG+GGG | + | chr5.1:14810985-14811004 | None:intergenic | 20.0% |
| !!! | TTTCATATTATCACTTGTTA+TGG | - | chr5.1:14810026-14810045 | MS.gene86552:intron | 20.0% |
| !!! | TTTGTGAATTGTTGATTAAT+AGG | + | chr5.1:14812791-14812810 | None:intergenic | 20.0% |
| !!! | TTTTTTATGATCATCTACAT+GGG | - | chr5.1:14810598-14810617 | MS.gene86552:intron | 20.0% |
| ! | AAGTTGAGAACGAAATTTAA+GGG | + | chr5.1:14813350-14813369 | None:intergenic | 25.0% |
| ! | ACTATAAACATGTGATGAAA+AGG | + | chr5.1:14812733-14812752 | None:intergenic | 25.0% |
| ! | AGAGGTTGAAAATATTAACA+AGG | - | chr5.1:14810909-14810928 | MS.gene86552:intron | 25.0% |
| ! | CATAATCATGCAAATGTTAA+AGG | - | chr5.1:14811445-14811464 | MS.gene86552:CDS | 25.0% |
| ! | CTTCACCATTAATTCAATTT+CGG | - | chr5.1:14810202-14810221 | MS.gene86552:intron | 25.0% |
| ! | CTTTAACATTTGCATGATTA+TGG | + | chr5.1:14811447-14811466 | None:intergenic | 25.0% |
| ! | GAAGATGAAATGAAAAAGTA+AGG | + | chr5.1:14809810-14809829 | None:intergenic | 25.0% |
| ! | GAAGATGTAGAAATATATAC+TGG | + | chr5.1:14813641-14813660 | None:intergenic | 25.0% |
| ! | GAATCAAATTGTGGAATATA+TGG | + | chr5.1:14812935-14812954 | None:intergenic | 25.0% |
| ! | GATTCTATTTCCTCAAATTA+AGG | - | chr5.1:14812950-14812969 | MS.gene86552:intron | 25.0% |
| ! | TAAAAAAGAATCCGTAAACA+TGG | + | chr5.1:14810585-14810604 | None:intergenic | 25.0% |
| ! | TGATACTAGAGAAAAACATA+GGG | + | chr5.1:14810120-14810139 | None:intergenic | 25.0% |
| ! | TGTTCATCAAAATGACAATT+TGG | + | chr5.1:14810699-14810718 | None:intergenic | 25.0% |
| ! | TTAATCAATCAAATCACTAG+AGG | + | chr5.1:14810637-14810656 | None:intergenic | 25.0% |
| ! | TTGAAATTCAAATCTTCACT+AGG | - | chr5.1:14812886-14812905 | MS.gene86552:intron | 25.0% |
| ! | TTGATTAACCTATGCATTTA+TGG | - | chr5.1:14810649-14810668 | MS.gene86552:intron | 25.0% |
| ! | TTTAAGGGAATTTAAGAGAA+AGG | + | chr5.1:14813335-14813354 | None:intergenic | 25.0% |
| !! | ATGTTCATTTGAAACTTTGA+GGG | + | chr5.1:14813011-14813030 | None:intergenic | 25.0% |
| !! | GATTGAAATTTTCAAATCGT+TGG | - | chr5.1:14810990-14811009 | MS.gene86552:intron | 25.0% |
| !! | GTGAATTTGATAACTGTTTA+CGG | - | chr5.1:14810390-14810409 | MS.gene86552:intron | 25.0% |
| !! | TTTTATATTACTTTGCAGAG+AGG | - | chr5.1:14810891-14810910 | MS.gene86552:intron | 25.0% |
| !!! | ATATACTTGAGTTTCTAGTT+GGG | - | chr5.1:14812093-14812112 | MS.gene86552:CDS | 25.0% |
| !!! | ATTTAGCTACTTTTAGCTTT+CGG | - | chr5.1:14812820-14812839 | MS.gene86552:intron | 25.0% |
| !!! | CTTTTTTATGATCATCTACA+TGG | - | chr5.1:14810597-14810616 | MS.gene86552:intron | 25.0% |
| !!! | TGTTTTGAATTTCTAGAACA+AGG | - | chr5.1:14811596-14811615 | MS.gene86552:CDS | 25.0% |
| !!! | TTTAAAGGCAATTTTGATTG+CGG | - | chr5.1:14812570-14812589 | MS.gene86552:intron | 25.0% |
| AACAAGTATCTTTACTTGTC+CGG | - | chr5.1:14811333-14811352 | MS.gene86552:CDS | 30.0% | |
| AAGACAATTCAGTACTTGAT+TGG | - | chr5.1:14811381-14811400 | MS.gene86552:CDS | 30.0% | |
| ACTATGCTTAATACTTTGGA+CGG | - | chr5.1:14811219-14811238 | MS.gene86552:CDS | 30.0% | |
| AGCAGCTTAGAATTAAAACA+TGG | + | chr5.1:14813548-14813567 | None:intergenic | 30.0% | |
| ATATCACTACTACAAGGAAA+AGG | + | chr5.1:14812464-14812483 | None:intergenic | 30.0% | |
| ATGATAGATGCTAATCTGAT+GGG | + | chr5.1:14813303-14813322 | None:intergenic | 30.0% | |
| ATTCAGTTGGATTCATGATA+GGG | - | chr5.1:14812253-14812272 | MS.gene86552:CDS | 30.0% | |
| CAAACGTAAGGTCATTTAAA+TGG | - | chr5.1:14810842-14810861 | MS.gene86552:intron | 30.0% | |
| CCAAACTATGCTTAATACTT+TGG | - | chr5.1:14811215-14811234 | MS.gene86552:CDS | 30.0% | |
| CTGATACTAGAGAAAAACAT+AGG | + | chr5.1:14810121-14810140 | None:intergenic | 30.0% | |
| CTTTCTTTGTGCAGAAAAAA+TGG | - | chr5.1:14813150-14813169 | MS.gene86552:intron | 30.0% | |
| GAAATGAAAAAGTAAGGGAA+GGG | + | chr5.1:14809804-14809823 | None:intergenic | 30.0% | |
| GAAGTTGAGAACGAAATTTA+AGG | + | chr5.1:14813351-14813370 | None:intergenic | 30.0% | |
| GAGGAAATAGAATCAAATTG+TGG | + | chr5.1:14812944-14812963 | None:intergenic | 30.0% | |
| GCAATCAAAATTGCCTTTAA+AGG | + | chr5.1:14812571-14812590 | None:intergenic | 30.0% | |
| TAAATCAATTCGCAAACGTA+AGG | - | chr5.1:14810830-14810849 | MS.gene86552:intron | 30.0% | |
| TACAGAGAATGTGCTTAAAA+TGG | - | chr5.1:14811503-14811522 | MS.gene86552:CDS | 30.0% | |
| TAGAAATATATACTGGAGCA+CGG | + | chr5.1:14813634-14813653 | None:intergenic | 30.0% | |
| TCATTGGAATAAGGCTATAT+TGG | - | chr5.1:14812680-14812699 | MS.gene86552:intron | 30.0% | |
| TGAAACATATCACTACTACA+AGG | + | chr5.1:14812470-14812489 | None:intergenic | 30.0% | |
| TGAAATGAAAAAGTAAGGGA+AGG | + | chr5.1:14809805-14809824 | None:intergenic | 30.0% | |
| TGAGTCAAGAATGAATTTCA+TGG | + | chr5.1:14811630-14811649 | None:intergenic | 30.0% | |
| TGATAACTGTTTACGGAAAT+TGG | - | chr5.1:14810397-14810416 | MS.gene86552:intron | 30.0% | |
| TTAAGCATAGTTTGGTAAGT+AGG | + | chr5.1:14811210-14811229 | None:intergenic | 30.0% | |
| TTGTCCTTTATTCTTCTTTG+CGG | - | chr5.1:14812603-14812622 | MS.gene86552:intron | 30.0% | |
| TTTGGATTGATGGAATTTGA+TGG | - | chr5.1:14811702-14811721 | MS.gene86552:intron | 30.0% | |
| ! | ATTGATGGAATTTGATGGAT+AGG | - | chr5.1:14811707-14811726 | MS.gene86552:intron | 30.0% |
| ! | CCAAAGTATTAAGCATAGTT+TGG | + | chr5.1:14811218-14811237 | None:intergenic | 30.0% |
| ! | GAAATTTTCAAATCGTTGGA+CGG | - | chr5.1:14810994-14811013 | MS.gene86552:intron | 30.0% |
| ! | GATGTTCATTTGAAACTTTG+AGG | + | chr5.1:14813012-14813031 | None:intergenic | 30.0% |
| ! | GTGAATTGTTGATTAATAGG+TGG | + | chr5.1:14812788-14812807 | None:intergenic | 30.0% |
| ! | TCTCTCTAATTTTGGATTGA+TGG | - | chr5.1:14811692-14811711 | MS.gene86552:intron | 30.0% |
| !! | AAAATTTCAATCTTTTGGGG+AGG | + | chr5.1:14810982-14811001 | None:intergenic | 30.0% |
| !! | AAAGATAGTGGAAAAGCTAT+TGG | - | chr5.1:14811908-14811927 | MS.gene86552:intron | 30.0% |
| !! | GATATACTTGAGTTTCTAGT+TGG | - | chr5.1:14812092-14812111 | MS.gene86552:CDS | 30.0% |
| !!! | TTTTTTCTTTCCTTCTTTGC+AGG | - | chr5.1:14809932-14809951 | MS.gene86552:intron | 30.0% |
| AAAGCAATAACTGTTCCATC+AGG | + | chr5.1:14811942-14811961 | None:intergenic | 35.0% | |
| AACTTCACTGAATCTGTTCA+TGG | - | chr5.1:14813365-14813384 | MS.gene86552:intron | 35.0% | |
| AAGTATATCAGCATAGTCCT+TGG | + | chr5.1:14812081-14812100 | None:intergenic | 35.0% | |
| AATCCAACTGAATGCAAGTT+TGG | + | chr5.1:14812246-14812265 | None:intergenic | 35.0% | |
| AATGAAGGATGTAGAATGAG+AGG | + | chr5.1:14813035-14813054 | None:intergenic | 35.0% | |
| ACAGCTGAAGAAAATAGACA+CGG | - | chr5.1:14811300-14811319 | MS.gene86552:CDS | 35.0% | |
| ACTATGAAAGAGAAGAGAAG+AGG | + | chr5.1:14813117-14813136 | None:intergenic | 35.0% | |
| AGAACAACAAAGTAGTCATC+TGG | + | chr5.1:14811156-14811175 | None:intergenic | 35.0% | |
| ATGAAGGATGTAGAATGAGA+GGG | + | chr5.1:14813034-14813053 | None:intergenic | 35.0% | |
| ATGAAGTGTAGATAAAGCCA+AGG | + | chr5.1:14811758-14811777 | None:intergenic | 35.0% | |
| ATGCGTGAAAAGTCCTTTAA+AGG | - | chr5.1:14812555-14812574 | MS.gene86552:intron | 35.0% | |
| CAGCAGAATAGTTATCAAAC+AGG | + | chr5.1:14812031-14812050 | None:intergenic | 35.0% | |
| CATCAGATTAGCATCTATCA+TGG | - | chr5.1:14813302-14813321 | MS.gene86552:intron | 35.0% | |
| CATGATAGATGCTAATCTGA+TGG | + | chr5.1:14813304-14813323 | None:intergenic | 35.0% | |
| CATTCAGTTGGATTCATGAT+AGG | - | chr5.1:14812252-14812271 | MS.gene86552:CDS | 35.0% | |
| CTACACTTCATTTCAAGAGA+GGG | - | chr5.1:14811767-14811786 | MS.gene86552:intron | 35.0% | |
| CTATGCTTAATACTTTGGAC+GGG | - | chr5.1:14811220-14811239 | MS.gene86552:CDS | 35.0% | |
| CTGTTAAGCATAAGCAATCA+GGG | - | chr5.1:14812402-14812421 | MS.gene86552:CDS | 35.0% | |
| CTTGTAGCTTCATTGGAATA+AGG | - | chr5.1:14812671-14812690 | MS.gene86552:intron | 35.0% | |
| GGTATAAACGTATATTCCCT+AGG | - | chr5.1:14810176-14810195 | MS.gene86552:intron | 35.0% | |
| GTACTACTCTAAGCATAGTA+AGG | - | chr5.1:14812278-14812297 | MS.gene86552:CDS | 35.0% | |
| TAATTCTAAGCTGCTTCACA+AGG | - | chr5.1:14813553-14813572 | MS.gene86552:intron | 35.0% | |
| TATACGCTTTCTCTCTTTCT+TGG | - | chr5.1:14810349-14810368 | MS.gene86552:intron | 35.0% | |
| TATGCTTAATACTTTGGACG+GGG | - | chr5.1:14811221-14811240 | MS.gene86552:CDS | 35.0% | |
| TCTACACTTCATTTCAAGAG+AGG | - | chr5.1:14811766-14811785 | MS.gene86552:intron | 35.0% | |
| TCTGTTAAGCATAAGCAATC+AGG | - | chr5.1:14812401-14812420 | MS.gene86552:CDS | 35.0% | |
| TGTAGATAAAGCCAAGGTAA+GGG | + | chr5.1:14811752-14811771 | None:intergenic | 35.0% | |
| TGTGTTTCCATGCGATATAA+AGG | + | chr5.1:14811796-14811815 | None:intergenic | 35.0% | |
| TGTTAAGCATAAGCAATCAG+GGG | - | chr5.1:14812403-14812422 | MS.gene86552:CDS | 35.0% | |
| TTTAATGAGCTGTCCATTCT+TGG | + | chr5.1:14810437-14810456 | None:intergenic | 35.0% | |
| TTTGATGAACACCTCTACAT+GGG | - | chr5.1:14810708-14810727 | MS.gene86552:intron | 35.0% | |
| ! | AAACTTTGAGGGAAAATGTG+TGG | + | chr5.1:14813000-14813019 | None:intergenic | 35.0% |
| ! | AATTTGATGGATAGGATCCT+CGG | - | chr5.1:14811715-14811734 | MS.gene86552:intron | 35.0% |
| ! | TATATTGACTGCGATAACGT+TGG | + | chr5.1:14811482-14811501 | None:intergenic | 35.0% |
| ! | TTTGTTGCTTGTAGCTTCAT+TGG | - | chr5.1:14812664-14812683 | MS.gene86552:intron | 35.0% |
| ! | TTTTGATGAACACCTCTACA+TGG | - | chr5.1:14810707-14810726 | MS.gene86552:intron | 35.0% |
| !! | AGATGACTACTTTGTTGTTC+TGG | - | chr5.1:14811155-14811174 | MS.gene86552:intron | 35.0% |
| !! | TCGGCATTTCTTTGATTTTG+AGG | + | chr5.1:14813180-14813199 | None:intergenic | 35.0% |
| !!! | ACTTTTAGCTTTCGGCAAAA+TGG | - | chr5.1:14812828-14812847 | MS.gene86552:intron | 35.0% |
| !!! | CTTTTAGCTTTCGGCAAAAT+GGG | - | chr5.1:14812829-14812848 | MS.gene86552:intron | 35.0% |
| !!! | TTTCTTTTGGGGTTTTGATG+TGG | + | chr5.1:14813231-14813250 | None:intergenic | 35.0% |
| AACCTATGCATTTATGGTGC+TGG | - | chr5.1:14810655-14810674 | MS.gene86552:intron | 40.0% | |
| AAGGATTGAATCGGAGAAGT+CGG | + | chr5.1:14813062-14813081 | None:intergenic | 40.0% | |
| AATATCCTCACCTGCAAAGA+AGG | + | chr5.1:14809945-14809964 | None:intergenic | 40.0% | |
| AATCTTCCAGCAACTCTACT+TGG | - | chr5.1:14812310-14812329 | MS.gene86552:CDS | 40.0% | |
| AATTAATGGTGAAGTCGCCT+AGG | + | chr5.1:14810196-14810215 | None:intergenic | 40.0% | |
| ACTTGAACATGCACTTCTCT+GGG | + | chr5.1:14810946-14810965 | None:intergenic | 40.0% | |
| AGAAGGAGGATGTTTGTGTA+GGG | + | chr5.1:14809702-14809721 | None:intergenic | 40.0% | |
| AGGATGTTTGTGTAGGGAAA+GGG | + | chr5.1:14809696-14809715 | None:intergenic | 40.0% | |
| ATCACAAAACTCCCATGTAG+AGG | + | chr5.1:14810722-14810741 | None:intergenic | 40.0% | |
| ATCTCTGCCAAGGATTGAAT+CGG | + | chr5.1:14813071-14813090 | None:intergenic | 40.0% | |
| ATTAATGGTGAAGTCGCCTA+GGG | + | chr5.1:14810195-14810214 | None:intergenic | 40.0% | |
| CATCCAAACTTGCATTCAGT+TGG | - | chr5.1:14812240-14812259 | MS.gene86552:CDS | 40.0% | |
| CTATTGGAGATTGATCCTGA+TGG | - | chr5.1:14811924-14811943 | MS.gene86552:intron | 40.0% | |
| CTCTGTTCCAACAAACACTA+TGG | - | chr5.1:14813710-14813729 | MS.gene86552:CDS | 40.0% | |
| GAAACAATTGTTCTCTTGCG+TGG | - | chr5.1:14812378-14812397 | MS.gene86552:CDS | 40.0% | |
| GACTGCTTACACAAAGATAG+TGG | - | chr5.1:14811896-14811915 | MS.gene86552:intron | 40.0% | |
| GGATATTCAGGATGCTTGTT+TGG | - | chr5.1:14809958-14809977 | MS.gene86552:intron | 40.0% | |
| GTGACCGCAAAGAAGAATAA+AGG | + | chr5.1:14812610-14812629 | None:intergenic | 40.0% | |
| GTGTAGATAAAGCCAAGGTA+AGG | + | chr5.1:14811753-14811772 | None:intergenic | 40.0% | |
| GTTAAGCATAAGCAATCAGG+GGG | - | chr5.1:14812404-14812423 | MS.gene86552:CDS | 40.0% | |
| TACCAGCACCATAAATGCAT+AGG | + | chr5.1:14810660-14810679 | None:intergenic | 40.0% | |
| TACTTGAACATGCACTTCTC+TGG | + | chr5.1:14810947-14810966 | None:intergenic | 40.0% | |
| TATCAAACAGGTTGTCGTCT+CGG | + | chr5.1:14812019-14812038 | None:intergenic | 40.0% | |
| TCTTTGTGTAAGCAGTCTCA+TGG | + | chr5.1:14811893-14811912 | None:intergenic | 40.0% | |
| TGTTCCAACAAACACTATGG+TGG | - | chr5.1:14813713-14813732 | MS.gene86552:CDS | 40.0% | |
| TTATTCTTCTTTGCGGTCAC+CGG | - | chr5.1:14812610-14812629 | MS.gene86552:intron | 40.0% | |
| TTGTCTCATATCAACACGTC+CGG | + | chr5.1:14811355-14811374 | None:intergenic | 40.0% | |
| TTTCAAATCGTTGGACGGTT+GGG | - | chr5.1:14810999-14811018 | MS.gene86552:intron | 40.0% | |
| ! | AGCAACAACGCTTTCTTTTG+GGG | + | chr5.1:14813242-14813261 | None:intergenic | 40.0% |
| ! | AGTGTTTGTTGGAACAGAGA+GGG | + | chr5.1:14813709-14813728 | None:intergenic | 40.0% |
| ! | ATTCAGTACTTGATTGGCTC+TGG | - | chr5.1:14811387-14811406 | MS.gene86552:CDS | 40.0% |
| ! | CAGCAACAACGCTTTCTTTT+GGG | + | chr5.1:14813243-14813262 | None:intergenic | 40.0% |
| ! | GATCATCTACATGGGAGTAT+TGG | - | chr5.1:14810606-14810625 | MS.gene86552:intron | 40.0% |
| ! | GGAGTTTGAGCCTTAATTTG+AGG | + | chr5.1:14812963-14812982 | None:intergenic | 40.0% |
| ! | GGGTTTAAGGTGAGTCAATA+AGG | + | chr5.1:14811034-14811053 | None:intergenic | 40.0% |
| ! | TAGTGTTTGTTGGAACAGAG+AGG | + | chr5.1:14813710-14813729 | None:intergenic | 40.0% |
| ! | TCAGCAACAACGCTTTCTTT+TGG | + | chr5.1:14813244-14813263 | None:intergenic | 40.0% |
| ! | TGTTGTTCTGGTTGGAGATA+TGG | - | chr5.1:14811167-14811186 | MS.gene86552:CDS | 40.0% |
| ! | TTTTCAAATCGTTGGACGGT+TGG | - | chr5.1:14810998-14811017 | MS.gene86552:intron | 40.0% |
| !! | AATACTTGAGTTGGTGCGAA+TGG | - | chr5.1:14812633-14812652 | MS.gene86552:intron | 40.0% |
| !! | GACTACTTTGTTGTTCTGGT+TGG | - | chr5.1:14811159-14811178 | MS.gene86552:intron | 40.0% |
| !! | TACTTGAGTTTCTAGTTGGG+AGG | - | chr5.1:14812096-14812115 | MS.gene86552:CDS | 40.0% |
| !! | TTACTGACTTGGAACCAGAA+CGG | + | chr5.1:14809780-14809799 | None:intergenic | 40.0% |
| !! | TTGCTTTTGCTGACATGATG+AGG | - | chr5.1:14811955-14811974 | MS.gene86552:intron | 40.0% |
| !!! | AAGGCAATTTTGATTGCGGT+TGG | - | chr5.1:14812574-14812593 | MS.gene86552:intron | 40.0% |
| !!! | ACTGTCGATTTTGATCAGAC+TGG | - | chr5.1:14810513-14810532 | MS.gene86552:intron | 40.0% |
| AACACTTCTCCACGGGTTTA+AGG | + | chr5.1:14811047-14811066 | None:intergenic | 45.0% | |
| AAGAAATGCCGAGTACGATG+AGG | - | chr5.1:14813188-14813207 | MS.gene86552:intron | 45.0% | |
| AAGCTGCTTCACAAGGTATG+AGG | - | chr5.1:14813560-14813579 | MS.gene86552:intron | 45.0% | |
| AAGTGAAGGAACTGAGAGAG+AGG | - | chr5.1:14811118-14811137 | MS.gene86552:intron | 45.0% | |
| AATCCATCTGAGGAAGGATC+AGG | + | chr5.1:14811090-14811109 | None:intergenic | 45.0% | |
| ACCTGAAAGTCCGGTTATGT+CGG | + | chr5.1:14812132-14812151 | None:intergenic | 45.0% | |
| ACTGAGAATAGCCCTTACCT+TGG | - | chr5.1:14811738-14811757 | MS.gene86552:intron | 45.0% | |
| AGAATCCGTAAACATGGACC+CGG | + | chr5.1:14810579-14810598 | None:intergenic | 45.0% | |
| AGTGAAGGAACTGAGAGAGA+GGG | - | chr5.1:14811119-14811138 | MS.gene86552:intron | 45.0% | |
| ATTGAATCGGAGAAGTCGGA+AGG | + | chr5.1:14813058-14813077 | None:intergenic | 45.0% | |
| ATTGCTCCAAGTAGAGTTGC+TGG | + | chr5.1:14812319-14812338 | None:intergenic | 45.0% | |
| CAAATCCGGGTCCATGTTTA+CGG | - | chr5.1:14810571-14810590 | MS.gene86552:intron | 45.0% | |
| CAGATCTCCCAAATTCCTCA+TGG | - | chr5.1:14809744-14809763 | MS.gene86552:intron | 45.0% | |
| CAGTGACACATTGATGCATC+TGG | + | chr5.1:14811557-14811576 | None:intergenic | 45.0% | |
| CCTTCTAGTGAAAGTAGCCA+TGG | + | chr5.1:14813094-14813113 | None:intergenic | 45.0% | |
| CTTTGCAGGTGAGGATATTC+AGG | - | chr5.1:14809946-14809965 | MS.gene86552:intron | 45.0% | |
| GACTTCTCCGATTCAATCCT+TGG | - | chr5.1:14813061-14813080 | MS.gene86552:intron | 45.0% | |
| GAGAAGGAGGATGTTTGTGT+AGG | + | chr5.1:14809703-14809722 | None:intergenic | 45.0% | |
| GAGGATGTTTGTGTAGGGAA+AGG | + | chr5.1:14809697-14809716 | None:intergenic | 45.0% | |
| GGATGTTTGTGTAGGGAAAG+GGG | + | chr5.1:14809695-14809714 | None:intergenic | 45.0% | |
| GTGGAAGCCATGAGGAATTT+GGG | + | chr5.1:14809754-14809773 | None:intergenic | 45.0% | |
| TCGCACCAACTCAAGTATTC+CGG | + | chr5.1:14812632-14812651 | None:intergenic | 45.0% | |
| TCTTCGAATCCATCTGAGGA+AGG | + | chr5.1:14811096-14811115 | None:intergenic | 45.0% | |
| TCTTTCCTTCTTTGCAGGTG+AGG | - | chr5.1:14809937-14809956 | MS.gene86552:intron | 45.0% | |
| TGCCTTTAGCAAGTGACATG+TGG | + | chr5.1:14812764-14812783 | None:intergenic | 45.0% | |
| TGGATTCGAAGAGCAAGTGA+AGG | - | chr5.1:14811104-14811123 | MS.gene86552:intron | 45.0% | |
| TGTGTGGATAGCAGAGATAG+AGG | + | chr5.1:14812984-14813003 | None:intergenic | 45.0% | |
| TTGCTCTTCGAATCCATCTG+AGG | + | chr5.1:14811100-14811119 | None:intergenic | 45.0% | |
| TTTGCTCACTGCAGCAAATC+CGG | - | chr5.1:14810557-14810576 | MS.gene86552:intron | 45.0% | |
| TTTGCTGCAGTGAGCAAATC+CGG | + | chr5.1:14810555-14810574 | None:intergenic | 45.0% | |
| ! | AAGGACTTTTCACGCATGCA+CGG | + | chr5.1:14812552-14812571 | None:intergenic | 45.0% |
| ! | AAGGCACAGGAGTATGTTTG+TGG | - | chr5.1:14812161-14812180 | MS.gene86552:CDS | 45.0% |
| ! | AAGGGAAGGGATTACTGACT+TGG | + | chr5.1:14809791-14809810 | None:intergenic | 45.0% |
| ! | AGGCACAGGAGTATGTTTGT+GGG | - | chr5.1:14812162-14812181 | MS.gene86552:CDS | 45.0% |
| ! | ATAACCGGACTTTCAGGTGA+GGG | - | chr5.1:14812134-14812153 | MS.gene86552:CDS | 45.0% |
| ! | ATCTGAGACTGGCCATTTGA+GGG | + | chr5.1:14809729-14809748 | None:intergenic | 45.0% |
| ! | ATTGACTCACCTTAAACCCG+TGG | - | chr5.1:14811035-14811054 | MS.gene86552:intron | 45.0% |
| ! | CCATGGCTACTTTCACTAGA+AGG | - | chr5.1:14813091-14813110 | MS.gene86552:intron | 45.0% |
| ! | GAATTTGGGAGATCTGAGAC+TGG | + | chr5.1:14809740-14809759 | None:intergenic | 45.0% |
| ! | GGAACGTGGTGATTTGAAGT+TGG | - | chr5.1:14811830-14811849 | MS.gene86552:intron | 45.0% |
| ! | TGCCACATGTCACTTGCTAA+AGG | - | chr5.1:14812759-14812778 | MS.gene86552:intron | 45.0% |
| ! | TTAAACCCGTGGAGAAGTGT+TGG | - | chr5.1:14811046-14811065 | MS.gene86552:intron | 45.0% |
| ! | TTGAAGTTGGCTCAGATCTG+TGG | - | chr5.1:14811843-14811862 | MS.gene86552:intron | 45.0% |
| !! | GAAAGCGTTGTTGCTGATTG+CGG | - | chr5.1:14813247-14813266 | MS.gene86552:intron | 45.0% |
| !! | GTACTTGATTGGCTCTGGAA+TGG | - | chr5.1:14811392-14811411 | MS.gene86552:CDS | 45.0% |
| !! | TTGAGTTTCTAGTTGGGAGG+TGG | - | chr5.1:14812099-14812118 | MS.gene86552:CDS | 45.0% |
| !! | AAAAAAAAAAAAAAAAAAAG+TGG | + | chr5.1:14810060-14810079 | None:intergenic | 5.0% |
| ACCAAGAATCAGAAGGCTGG+AGG | - | chr5.1:14812190-14812209 | MS.gene86552:CDS | 50.0% | |
| AGCGAGTCTCGTGGTTATTG+TGG | - | chr5.1:14813272-14813291 | MS.gene86552:intron | 50.0% | |
| AGGGCGACCTTTATATCGCA+TGG | - | chr5.1:14811786-14811805 | MS.gene86552:intron | 50.0% | |
| AGTGTAGACTCCAATGCGCT+GGG | + | chr5.1:14812057-14812076 | None:intergenic | 50.0% | |
| ATGGGACCGCAGAGTAAACT+AGG | - | chr5.1:14812847-14812866 | MS.gene86552:intron | 50.0% | |
| CAATCCTTGGCAGAGATCCA+TGG | - | chr5.1:14813074-14813093 | MS.gene86552:intron | 50.0% | |
| CATACAGTCGCGTCCAAGAA+TGG | - | chr5.1:14810421-14810440 | MS.gene86552:intron | 50.0% | |
| CATTGGAGTCTACACTGCCA+AGG | - | chr5.1:14812061-14812080 | MS.gene86552:CDS | 50.0% | |
| CATTTGAGGGAGAGAGAAGG+AGG | + | chr5.1:14809716-14809735 | None:intergenic | 50.0% | |
| CCAGCACACCTGATGTATGA+TGG | - | chr5.1:14811993-14812012 | MS.gene86552:intron | 50.0% | |
| CCATCATACATCAGGTGTGC+TGG | + | chr5.1:14811996-14812015 | None:intergenic | 50.0% | |
| CCTTCGTTCCTCATCGTACT+CGG | + | chr5.1:14813199-14813218 | None:intergenic | 50.0% | |
| CTCCTTCTCTCTCCCTCAAA+TGG | - | chr5.1:14809714-14809733 | MS.gene86552:intron | 50.0% | |
| GAGAGCTTCAGCAAGAGCAA+AGG | - | chr5.1:14812214-14812233 | MS.gene86552:CDS | 50.0% | |
| GCTGCCACCATAGTGTTTGT+TGG | + | chr5.1:14813720-14813739 | None:intergenic | 50.0% | |
| GGAGAAGTCGGAAGGAATGA+AGG | + | chr5.1:14813050-14813069 | None:intergenic | 50.0% | |
| GGATCAGGCAGAAAATCCTG+TGG | + | chr5.1:14811075-14811094 | None:intergenic | 50.0% | |
| GGTCACCGGAATACTTGAGT+TGG | - | chr5.1:14812624-14812643 | MS.gene86552:intron | 50.0% | |
| GGTGGAAGCCATGAGGAATT+TGG | + | chr5.1:14809755-14809774 | None:intergenic | 50.0% | |
| GGTTGCCACCAAGAATCAGA+AGG | - | chr5.1:14812183-14812202 | MS.gene86552:CDS | 50.0% | |
| TAAGGGCTATTCTCAGTCCG+AGG | + | chr5.1:14811735-14811754 | None:intergenic | 50.0% | |
| TATCGCATGGAAACACAGCC+AGG | - | chr5.1:14811799-14811818 | MS.gene86552:intron | 50.0% | |
| TCCAAATAGCCCAGGGAGTA+GGG | + | chr5.1:14811269-14811288 | None:intergenic | 50.0% | |
| TCCAGCCTTCTGATTCTTGG+TGG | + | chr5.1:14812191-14812210 | None:intergenic | 50.0% | |
| TCCCTGGGCTATTTGGACAA+GGG | - | chr5.1:14811272-14811291 | MS.gene86552:CDS | 50.0% | |
| TCCTCCAGCCTTCTGATTCT+TGG | + | chr5.1:14812194-14812213 | None:intergenic | 50.0% | |
| TGAACATGCACTTCTCTGGG+AGG | + | chr5.1:14810943-14810962 | None:intergenic | 50.0% | |
| TGGTTGCCAACACTTCTCCA+CGG | + | chr5.1:14811055-14811074 | None:intergenic | 50.0% | |
| TTGCTCACTGCAGCAAATCC+GGG | - | chr5.1:14810558-14810577 | MS.gene86552:intron | 50.0% | |
| ! | ACTTTCAGGTGAGGGACGAA+AGG | - | chr5.1:14812142-14812161 | MS.gene86552:CDS | 50.0% |
| ! | CATAACCGGACTTTCAGGTG+AGG | - | chr5.1:14812133-14812152 | MS.gene86552:CDS | 50.0% |
| ! | GATCTGAGACTGGCCATTTG+AGG | + | chr5.1:14809730-14809749 | None:intergenic | 50.0% |
| ! | TGACTTGGAACCAGAACGGA+GGG | + | chr5.1:14809776-14809795 | None:intergenic | 50.0% |
| !! | AAACACAGCCAGGCTTGCTA+AGG | - | chr5.1:14811809-14811828 | MS.gene86552:intron | 50.0% |
| !! | CTTTTGGGGAGGCATAGAGT+GGG | + | chr5.1:14810971-14810990 | None:intergenic | 50.0% |
| !! | GTTTCTAGTTGGGAGGTGGA+AGG | - | chr5.1:14812103-14812122 | MS.gene86552:CDS | 50.0% |
| !! | TCTTTTGGGGAGGCATAGAG+TGG | + | chr5.1:14810972-14810991 | None:intergenic | 50.0% |
| AACACTATGGTGGCAGCCTC+CGG | - | chr5.1:14813723-14813742 | MS.gene86552:CDS | 55.0% | |
| ACCACGTTCCTTAGCAAGCC+TGG | + | chr5.1:14811820-14811839 | None:intergenic | 55.0% | |
| ATTGCGGAAAGCGAGTCTCG+TGG | - | chr5.1:14813263-14813282 | MS.gene86552:intron | 55.0% | |
| CAGGGGGCAGCTGTAGTAAT+AGG | - | chr5.1:14812420-14812439 | MS.gene86552:CDS | 55.0% | |
| CAGTGTAGACTCCAATGCGC+TGG | + | chr5.1:14812058-14812077 | None:intergenic | 55.0% | |
| CCGAGTACGATGAGGAACGA+AGG | - | chr5.1:14813196-14813215 | MS.gene86552:intron | 55.0% | |
| CGTCTCGGCCATCATACATC+AGG | + | chr5.1:14812004-14812023 | None:intergenic | 55.0% | |
| CTCCCGCCTAGTTTACTCTG+CGG | + | chr5.1:14812856-14812875 | None:intergenic | 55.0% | |
| CTCCCTGGGCTATTTGGACA+AGG | - | chr5.1:14811271-14811290 | MS.gene86552:CDS | 55.0% | |
| CTGCCTGATCCTTCCTCAGA+TGG | - | chr5.1:14811084-14811103 | MS.gene86552:intron | 55.0% | |
| GACCGCAGAGTAAACTAGGC+GGG | - | chr5.1:14812851-14812870 | MS.gene86552:intron | 55.0% | |
| GACGGGGTTCGTGATGAAAC+AGG | - | chr5.1:14811237-14811256 | MS.gene86552:CDS | 55.0% | |
| GCCACCAAGAATCAGAAGGC+TGG | - | chr5.1:14812187-14812206 | MS.gene86552:CDS | 55.0% | |
| GCCCTTGTCCAAATAGCCCA+GGG | + | chr5.1:14811276-14811295 | None:intergenic | 55.0% | |
| GCCGACATAACCGGACTTTC+AGG | - | chr5.1:14812128-14812147 | MS.gene86552:CDS | 55.0% | |
| GGACCGCAGAGTAAACTAGG+CGG | - | chr5.1:14812850-14812869 | MS.gene86552:intron | 55.0% | |
| GGCCATTTGAGGGAGAGAGA+AGG | + | chr5.1:14809719-14809738 | None:intergenic | 55.0% | |
| GGGCTATTTGGACAAGGGCA+TGG | - | chr5.1:14811277-14811296 | MS.gene86552:CDS | 55.0% | |
| GGTTGCCAACACTTCTCCAC+GGG | + | chr5.1:14811054-14811073 | None:intergenic | 55.0% | |
| GTAGCCATGGATCTCTGCCA+AGG | + | chr5.1:14813081-14813100 | None:intergenic | 55.0% | |
| GTCCAAATAGCCCAGGGAGT+AGG | + | chr5.1:14811270-14811289 | None:intergenic | 55.0% | |
| TCGTCCCTCACCTGAAAGTC+CGG | + | chr5.1:14812141-14812160 | None:intergenic | 55.0% | |
| TCTAGTTGGGAGGTGGAAGG+TGG | - | chr5.1:14812106-14812125 | MS.gene86552:CDS | 55.0% | |
| TGCCCTTGTCCAAATAGCCC+AGG | + | chr5.1:14811277-14811296 | None:intergenic | 55.0% | |
| TGGAAGGTGGCCGACATAAC+CGG | - | chr5.1:14812119-14812138 | MS.gene86552:CDS | 55.0% | |
| !! | CTGACTTGGAACCAGAACGG+AGG | + | chr5.1:14809777-14809796 | None:intergenic | 55.0% |
| !! | GGAGAAGTGTTGGCAACCAC+AGG | - | chr5.1:14811056-14811075 | MS.gene86552:intron | 55.0% |
| !! | TGGCATCGACTTGTGACTGC+CGG | - | chr5.1:14810533-14810552 | MS.gene86552:intron | 55.0% |
| AACGGAGGGTGGAAGCCATG+AGG | + | chr5.1:14809762-14809781 | None:intergenic | 60.0% | |
| AATAGCCCAGGGAGTAGGGC+TGG | + | chr5.1:14811265-14811284 | None:intergenic | 60.0% | |
| ATCGTTGGACGGTTGGGCTG+AGG | - | chr5.1:14811005-14811024 | MS.gene86552:CDS | 60.0% | |
| ATGGCTTCCACCCTCCGTTC+TGG | - | chr5.1:14809763-14809782 | MS.gene86552:intron | 60.0% | |
| CTTGGAACCAGAACGGAGGG+TGG | + | chr5.1:14809773-14809792 | None:intergenic | 60.0% | |
| GCCCTACTCCCTGGGCTATT+TGG | - | chr5.1:14811265-14811284 | MS.gene86552:CDS | 60.0% | |
| GGACCACCTTACCTCTGCGT+CGG | + | chr5.1:14813613-14813632 | None:intergenic | 60.0% | |
| TCTGCTGTTGCCCAGCGCAT+TGG | - | chr5.1:14812044-14812063 | MS.gene86552:CDS | 60.0% | |
| ! | AGGTGAGGGACGAAAGGCAC+AGG | - | chr5.1:14812148-14812167 | MS.gene86552:CDS | 60.0% |
| ! | GGGAAAGGGGTTGCTCTGAG+AGG | + | chr5.1:14809682-14809701 | None:intergenic | 60.0% |
| !! | GCCAGGCTTGCTAAGGAACG+TGG | - | chr5.1:14811816-14811835 | MS.gene86552:intron | 60.0% |
| AGAAGCCCTTGCCTCCACGC+CGG | + | chr5.1:14813745-14813764 | None:intergenic | 65.0% | |
| AGGTGCCAGCCCTACTCCCT+GGG | - | chr5.1:14811257-14811276 | MS.gene86552:CDS | 65.0% | |
| CAGGCTCCGACGCAGAGGTA+AGG | - | chr5.1:14813604-14813623 | MS.gene86552:intron | 65.0% | |
| GCGTGCACAGCTGTGGATGC+AGG | - | chr5.1:14813585-14813604 | MS.gene86552:intron | 65.0% | |
| GCTCCGACGCAGAGGTAAGG+TGG | - | chr5.1:14813607-14813626 | MS.gene86552:intron | 65.0% | |
| TGAGGCAGCGTGCACAGCTG+TGG | - | chr5.1:14813578-14813597 | MS.gene86552:intron | 65.0% | |
| AGCCTCCGGCGTGGAGGCAA+GGG | - | chr5.1:14813737-14813756 | MS.gene86552:CDS | 70.0% | |
| CAGGTGCCAGCCCTACTCCC+TGG | - | chr5.1:14811256-14811275 | MS.gene86552:CDS | 70.0% | |
| GGATGCAGGCTCCGACGCAG+AGG | - | chr5.1:14813599-14813618 | MS.gene86552:intron | 70.0% | |
| TATGGTGGCAGCCTCCGGCG+TGG | - | chr5.1:14813728-14813747 | MS.gene86552:CDS | 70.0% | |
| AGCCCTTGCCTCCACGCCGG+AGG | + | chr5.1:14813742-14813761 | None:intergenic | 75.0% | |
| CAGCCTCCGGCGTGGAGGCA+AGG | - | chr5.1:14813736-14813755 | MS.gene86552:CDS | 75.0% | |
| ! | GGTGGCAGCCTCCGGCGTGG+AGG | - | chr5.1:14813731-14813750 | MS.gene86552:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 14809673 | 14813766 | 14809673 | ID=MS.gene86552 |
| chr5.1 | mRNA | 14809673 | 14813766 | 14809673 | ID=MS.gene86552.t1;Parent=MS.gene86552 |
| chr5.1 | exon | 14813648 | 14813766 | 14813648 | ID=MS.gene86552.t1.exon1;Parent=MS.gene86552.t1 |
| chr5.1 | CDS | 14813648 | 14813766 | 14813648 | ID=cds.MS.gene86552.t1;Parent=MS.gene86552.t1 |
| chr5.1 | exon | 14812026 | 14812530 | 14812026 | ID=MS.gene86552.t1.exon2;Parent=MS.gene86552.t1 |
| chr5.1 | CDS | 14812026 | 14812530 | 14812026 | ID=cds.MS.gene86552.t1;Parent=MS.gene86552.t1 |
| chr5.1 | exon | 14811162 | 14811710 | 14811162 | ID=MS.gene86552.t1.exon3;Parent=MS.gene86552.t1 |
| chr5.1 | CDS | 14811162 | 14811710 | 14811162 | ID=cds.MS.gene86552.t1;Parent=MS.gene86552.t1 |
| chr5.1 | exon | 14811005 | 14811029 | 14811005 | ID=MS.gene86552.t1.exon4;Parent=MS.gene86552.t1 |
| chr5.1 | CDS | 14811005 | 14811029 | 14811005 | ID=cds.MS.gene86552.t1;Parent=MS.gene86552.t1 |
| chr5.1 | exon | 14809799 | 14809904 | 14809799 | ID=MS.gene86552.t1.exon5;Parent=MS.gene86552.t1 |
| chr5.1 | CDS | 14809799 | 14809904 | 14809799 | ID=cds.MS.gene86552.t1;Parent=MS.gene86552.t1 |
| chr5.1 | exon | 14809673 | 14809700 | 14809673 | ID=MS.gene86552.t1.exon6;Parent=MS.gene86552.t1 |
| chr5.1 | CDS | 14809673 | 14809700 | 14809673 | ID=cds.MS.gene86552.t1;Parent=MS.gene86552.t1 |
| Gene Sequence |
| Protein sequence |
