Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86830.t1 | XP_013468879.1 | 95.9 | 395 | 16 | 0 | 1 | 395 | 1 | 395 | 1.90E-224 | 788.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86830.t1 | P53808 | 25.4 | 177 | 117 | 5 | 132 | 302 | 46 | 213 | 1.2e-09 | 65.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86830.t1 | A0A072VMT6 | 95.9 | 395 | 16 | 0 | 1 | 395 | 1 | 395 | 1.4e-224 | 788.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049599 | MS.gene86830 | -0.803198 | 3.91E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene86830 | 0.817285 | 3.57E-52 | -1.69E-46 |
| MS.gene050128 | MS.gene86830 | 0.827152 | 1.83E-54 | -1.69E-46 |
| MS.gene050301 | MS.gene86830 | 0.818377 | 2.02E-52 | -1.69E-46 |
| MS.gene053559 | MS.gene86830 | 0.817223 | 3.69E-52 | -1.69E-46 |
| MS.gene053836 | MS.gene86830 | 0.801724 | 7.87E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene86830 | 0.804564 | 2.03E-49 | -1.69E-46 |
| MS.gene059597 | MS.gene86830 | 0.816531 | 5.27E-52 | -1.69E-46 |
| MS.gene059894 | MS.gene86830 | 0.802979 | 4.34E-49 | -1.69E-46 |
| MS.gene059899 | MS.gene86830 | 0.835468 | 1.65E-56 | -1.69E-46 |
| MS.gene06037 | MS.gene86830 | 0.813625 | 2.33E-51 | -1.69E-46 |
| MS.gene060495 | MS.gene86830 | 0.840134 | 1.04E-57 | -1.69E-46 |
| MS.gene061049 | MS.gene86830 | 0.810752 | 9.86E-51 | -1.69E-46 |
| MS.gene061051 | MS.gene86830 | -0.804356 | 2.25E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86830.t1 | MTR_1g078030 | 95.949 | 395 | 16 | 0 | 1 | 395 | 1 | 395 | 0.0 | 785 |
| MS.gene86830.t1 | MTR_3g092640 | 53.771 | 411 | 155 | 5 | 19 | 394 | 14 | 424 | 2.14e-161 | 460 |
| MS.gene86830.t1 | MTR_5g007030 | 42.280 | 421 | 202 | 7 | 9 | 390 | 17 | 435 | 3.04e-110 | 330 |
| MS.gene86830.t1 | MTR_5g007030 | 49.387 | 326 | 158 | 5 | 70 | 390 | 2 | 325 | 2.20e-106 | 317 |
| MS.gene86830.t1 | MTR_4g005140 | 30.450 | 289 | 182 | 7 | 91 | 368 | 71 | 351 | 1.84e-34 | 131 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86830.t1 | AT1G64720 | 62.016 | 387 | 125 | 6 | 13 | 395 | 17 | 385 | 2.37e-173 | 489 |
| MS.gene86830.t1 | AT5G54170 | 56.013 | 316 | 133 | 4 | 83 | 394 | 120 | 433 | 8.52e-123 | 363 |
| MS.gene86830.t1 | AT4G14500 | 45.169 | 414 | 185 | 8 | 15 | 390 | 23 | 432 | 3.03e-115 | 343 |
| MS.gene86830.t1 | AT3G23080 | 43.659 | 410 | 199 | 9 | 9 | 390 | 13 | 418 | 2.97e-106 | 320 |
| MS.gene86830.t1 | AT3G23080 | 44.757 | 391 | 184 | 9 | 28 | 390 | 1 | 387 | 1.70e-102 | 309 |
| MS.gene86830.t1 | AT3G23080 | 44.757 | 391 | 184 | 9 | 28 | 390 | 1 | 387 | 1.70e-102 | 309 |
| MS.gene86830.t1 | AT4G14500 | 40.964 | 249 | 108 | 6 | 21 | 230 | 29 | 277 | 1.66e-54 | 182 |
| MS.gene86830.t1 | AT3G13062 | 30.159 | 315 | 204 | 8 | 90 | 394 | 82 | 390 | 5.68e-39 | 144 |
| MS.gene86830.t1 | AT3G13062 | 30.159 | 315 | 204 | 8 | 90 | 394 | 82 | 390 | 1.16e-38 | 144 |
| MS.gene86830.t1 | AT3G13062 | 29.102 | 323 | 205 | 8 | 90 | 394 | 82 | 398 | 1.02e-36 | 138 |
| MS.gene86830.t1 | AT1G55960 | 31.126 | 302 | 187 | 9 | 82 | 368 | 73 | 368 | 7.57e-35 | 133 |
| MS.gene86830.t1 | AT1G55960 | 28.808 | 302 | 169 | 11 | 82 | 368 | 73 | 343 | 8.47e-23 | 99.4 |
Find 122 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATCATAGGTCGTCGAATT+TGG | 0.185811 | 1.1:-58437853 | MS.gene86830:CDS |
| AGTTGGTTAGGGATTTCTTT+TGG | 0.205035 | 1.1:-58438107 | MS.gene86830:CDS |
| GTGACCAAGGCGGTTGTATT+TGG | 0.231338 | 1.1:-58436453 | MS.gene86830:CDS |
| TTGATCCTAATAACTATTCT+TGG | 0.250379 | 1.1:-58439669 | MS.gene86830:CDS |
| GTTCTTTCACTATGAAGATA+TGG | 0.258130 | 1.1:-58436790 | MS.gene86830:CDS |
| GTACTCCAAGAATAGTTATT+AGG | 0.286054 | 1.1:+58439664 | None:intergenic |
| GAATTCCTTTGTTGTTGTTA+TGG | 0.286629 | 1.1:-58439788 | MS.gene86830:CDS |
| TAATATAGATCTACCCGTTT+AGG | 0.290502 | 1.1:+58437373 | None:intergenic |
| TGTTGTTGTTATGGATATCT+TGG | 0.306159 | 1.1:-58439779 | MS.gene86830:CDS |
| ATTAGGATCAATAGCCCATT+TGG | 0.314280 | 1.1:+58439681 | None:intergenic |
| CTTGCCTGCACCCTTGATCA+AGG | 0.320705 | 1.1:-58436480 | MS.gene86830:CDS |
| CGCTAAGCTTGGAGTTCGTC+AGG | 0.333843 | 1.1:-58436751 | MS.gene86830:CDS |
| GCTTCAAAACCAACCTGGTT+TGG | 0.345626 | 1.1:-58439599 | MS.gene86830:CDS |
| ATGCGAGTCCTGAGTTGGTT+AGG | 0.358805 | 1.1:-58438119 | MS.gene86830:CDS |
| TTCAGTCTCCAACAGGTTAC+CGG | 0.359683 | 1.1:+58436578 | None:intergenic |
| CTTTGGATTGCTGTTATCTT+CGG | 0.360253 | 1.1:-58439730 | MS.gene86830:CDS |
| TATCATAGGTCGTCGAATTT+GGG | 0.370573 | 1.1:-58437852 | MS.gene86830:CDS |
| TTCTTTCACTATGAAGATAT+GGG | 0.383405 | 1.1:-58436789 | MS.gene86830:CDS |
| CCTGTTGGAGACTGAAAATC+AGG | 0.397121 | 1.1:-58436571 | MS.gene86830:CDS |
| GCCCGACGGTTTGGAAAATT+CGG | 0.400471 | 1.1:-58436426 | MS.gene86830:CDS |
| TTTGGAATAGCCCGACGGTT+TGG | 0.406644 | 1.1:-58436435 | MS.gene86830:CDS |
| GTGTTGTTGTTGGTTGGGCT+TGG | 0.406854 | 1.1:-58439708 | MS.gene86830:CDS |
| GTTGTTGTTATGGATATCTT+GGG | 0.415623 | 1.1:-58439778 | MS.gene86830:CDS |
| TATAAGAAAGAAAGGGATTC+CGG | 0.417822 | 1.1:-58436684 | MS.gene86830:CDS |
| CGTTTAGGTTTGCTCTGCCT+TGG | 0.417964 | 1.1:+58437388 | None:intergenic |
| CTTCGGTGTTGTTGTTGGTT+GGG | 0.423403 | 1.1:-58439713 | MS.gene86830:CDS |
| TTCTCTATCACTGCAAAAGA+AGG | 0.424377 | 1.1:+58437877 | None:intergenic |
| AGGTTTGCTCTGCCTTGGTA+TGG | 0.426290 | 1.1:+58437393 | None:intergenic |
| CAAGGCAGAGCAAACCTAAA+CGG | 0.429915 | 1.1:-58437387 | MS.gene86830:CDS |
| TCTTCGGTGTTGTTGTTGGT+TGG | 0.430475 | 1.1:-58439714 | MS.gene86830:CDS |
| ATACCTAAGCTTCTAGTTGT+TGG | 0.433725 | 1.1:-58436516 | MS.gene86830:CDS |
| TTTGCAAAATTTGTGTAAGT+TGG | 0.443993 | 1.1:-58439334 | MS.gene86830:CDS |
| CAAGCTTGGTAAGTCATGTT+TGG | 0.447227 | 1.1:+58439258 | None:intergenic |
| GTTGGGCTTGGAAACCCAAA+TGG | 0.449819 | 1.1:-58439696 | MS.gene86830:CDS |
| TTAGGATCAATAGCCCATTT+GGG | 0.450854 | 1.1:+58439682 | None:intergenic |
| TGGTCACTAGCCCTTGATCA+AGG | 0.452319 | 1.1:+58436469 | None:intergenic |
| TTGGAGTTCGTCAGGGTATG+TGG | 0.453950 | 1.1:-58436743 | MS.gene86830:CDS |
| GTTATCTTCGGTGTTGTTGT+TGG | 0.454908 | 1.1:-58439718 | MS.gene86830:CDS |
| TCTTCAAGTTTCGAATTCCT+TGG | 0.455904 | 1.1:-58439636 | MS.gene86830:CDS |
| CAAAATTTGTGTAAGTTGGT+TGG | 0.456209 | 1.1:-58439330 | MS.gene86830:CDS |
| TACGTACGTATAAGAAAGAA+AGG | 0.462465 | 1.1:-58436692 | MS.gene86830:CDS |
| AAGGCAGAGCAAACCTAAAC+GGG | 0.465305 | 1.1:-58437386 | MS.gene86830:CDS |
| TTCTGGTGGTGAAAGTGAAA+AGG | 0.472293 | 1.1:-58439385 | MS.gene86830:CDS |
| TGCGAGTCCTGAGTTGGTTA+GGG | 0.472434 | 1.1:-58438118 | MS.gene86830:CDS |
| CTAAGCTTCTAGTTGTTGGC+GGG | 0.478011 | 1.1:-58436512 | MS.gene86830:CDS |
| CTTGATCAAGGGTGCAGGCA+AGG | 0.479777 | 1.1:+58436481 | None:intergenic |
| CCTAAGCTTCTAGTTGTTGG+CGG | 0.482710 | 1.1:-58436513 | MS.gene86830:CDS |
| TTCTTATACGTACGTAGTCC+AGG | 0.487357 | 1.1:+58436699 | None:intergenic |
| ATGAAGATATGGGCATACCT+TGG | 0.492383 | 1.1:-58436779 | MS.gene86830:CDS |
| CCAGTTAAATCAAGAAAAGA+TGG | 0.498146 | 1.1:-58436837 | MS.gene86830:intron |
| TGAAGATATGGGCATACCTT+GGG | 0.500114 | 1.1:-58436778 | MS.gene86830:CDS |
| TCCAGGATCAAACTTCTTGA+CGG | 0.500862 | 1.1:+58436716 | None:intergenic |
| GCCGTCAAGAAGTTTGATCC+TGG | 0.503459 | 1.1:-58436717 | MS.gene86830:CDS |
| AACTTACTACTGTGTGACTA+AGG | 0.511110 | 1.1:-58437819 | MS.gene86830:intron |
| TTACGTTCATAGCTCCACTT+TGG | 0.512161 | 1.1:-58439747 | MS.gene86830:CDS |
| CTTCTGATGACAAACCGATC+GGG | 0.515089 | 1.1:-58436545 | MS.gene86830:CDS |
| CCGCCAACAACTAGAAGCTT+AGG | 0.515981 | 1.1:+58436513 | None:intergenic |
| ACCAGCTTGGATTCAGATGA+TGG | 0.516098 | 1.1:-58439292 | MS.gene86830:CDS |
| TTTGCTCTGCCTTGGTATGG+AGG | 0.518246 | 1.1:+58437396 | None:intergenic |
| TTGCCTGCACCCTTGATCAA+GGG | 0.518780 | 1.1:-58436479 | MS.gene86830:CDS |
| CCTTGGGAAATCGCTAAGCT+TGG | 0.519071 | 1.1:-58436762 | MS.gene86830:CDS |
| TGGAGTTCGTCAGGGTATGT+GGG | 0.522164 | 1.1:-58436742 | MS.gene86830:CDS |
| ATTCAAGAGTGTGAGGTCAC+TGG | 0.523985 | 1.1:-58438033 | MS.gene86830:CDS |
| TTGATCAAGGGTGCAGGCAA+GGG | 0.525896 | 1.1:+58436482 | None:intergenic |
| CTTGGTCCCTACGCCAAGCT+TGG | 0.528324 | 1.1:+58439244 | None:intergenic |
| AAGGGTGCAGGCAAGGGCAA+TGG | 0.537523 | 1.1:+58436488 | None:intergenic |
| TTAGGTATGCTTCTCCCGAT+CGG | 0.542706 | 1.1:+58436531 | None:intergenic |
| CAAACATGACTTACCAAGCT+TGG | 0.544826 | 1.1:-58439257 | MS.gene86830:CDS |
| GGTCACTAGCCCTTGATCAA+GGG | 0.548340 | 1.1:+58436470 | None:intergenic |
| TCTGGTGGTGAAAGTGAAAA+GGG | 0.549404 | 1.1:-58439384 | MS.gene86830:CDS |
| AGTGATAGAGAATATATCAT+AGG | 0.553664 | 1.1:-58437866 | MS.gene86830:CDS |
| GGGATGATGAGTTTCGGTCG+AGG | 0.555696 | 1.1:-58438086 | MS.gene86830:CDS |
| TAGCCCTTGATCAAGGGTGC+AGG | 0.555894 | 1.1:+58436476 | None:intergenic |
| TTGGGCTTGGAAACCCAAAT+GGG | 0.556004 | 1.1:-58439695 | MS.gene86830:CDS |
| GTTTGGAATACTCCGCAACC+AGG | 0.561804 | 1.1:-58439582 | MS.gene86830:intron |
| GTGAAAGTGAAAAGGGATTG+AGG | 0.563385 | 1.1:-58439377 | MS.gene86830:CDS |
| TGATGAGTTTCGGTCGAGGT+GGG | 0.565414 | 1.1:-58438082 | MS.gene86830:CDS |
| GACTTACCAAGCTTGGCGTA+GGG | 0.568038 | 1.1:-58439250 | MS.gene86830:CDS |
| GACGGTTTGGAAAATTCGGA+AGG | 0.568472 | 1.1:-58436422 | MS.gene86830:CDS |
| AAGAAATCCCTAACCAACTC+AGG | 0.569522 | 1.1:+58438111 | None:intergenic |
| ACACTTCACATGAAGTCAGC+TGG | 0.570067 | 1.1:+58436814 | None:intergenic |
| TGACTTACCAAGCTTGGCGT+AGG | 0.571589 | 1.1:-58439251 | MS.gene86830:CDS |
| CGGAGTATTCCAAACCAGGT+TGG | 0.575515 | 1.1:+58439590 | None:intergenic |
| ATGATGAGTTTCGGTCGAGG+TGG | 0.576909 | 1.1:-58438083 | MS.gene86830:CDS |
| TCCATCATCTGAATCCAAGC+TGG | 0.578196 | 1.1:+58439291 | None:intergenic |
| TATTCCAAATACAACCGCCT+TGG | 0.579315 | 1.1:+58436449 | None:intergenic |
| TCTCTATCACTGCAAAAGAA+GGG | 0.579682 | 1.1:+58437878 | None:intergenic |
| AGACTCGACCGGTAACCTGT+TGG | 0.583874 | 1.1:-58436586 | MS.gene86830:CDS |
| TAAGCTTCTAGTTGTTGGCG+GGG | 0.595982 | 1.1:-58436511 | MS.gene86830:CDS |
| TCTTCTGATGACAAACCGAT+CGG | 0.596047 | 1.1:-58436546 | MS.gene86830:CDS |
| GGTTTGGAAAATTCGGAAGG+AGG | 0.596932 | 1.1:-58436419 | MS.gene86830:CDS |
| GTTGCGGAGTATTCCAAACC+AGG | 0.600622 | 1.1:+58439586 | None:intergenic |
| AAGATAACAGCAATCCAAAG+TGG | 0.602074 | 1.1:+58439733 | None:intergenic |
| TGAAGATGCGAGTCCTGAGT+TGG | 0.613594 | 1.1:-58438124 | MS.gene86830:CDS |
| TCAGAGCTTCAAAACCAACC+TGG | 0.614875 | 1.1:-58439604 | MS.gene86830:CDS |
| CCAAGCTTAGCGATTTCCCA+AGG | 0.615945 | 1.1:+58436762 | None:intergenic |
| GATGGTGCAGTGGGTGCGCA+AGG | 0.620411 | 1.1:-58438004 | MS.gene86830:intron |
| TAAACTGTCAATTACCTGCA+CGG | 0.621201 | 1.1:+58437335 | None:intergenic |
| ACGTACGTATAAGAAAGAAA+GGG | 0.623052 | 1.1:-58436691 | MS.gene86830:CDS |
| CTGGAACAATGATGGTGCAG+TGG | 0.625357 | 1.1:-58438014 | MS.gene86830:CDS |
| TACTTTGTTCCTCCATACCA+AGG | 0.625373 | 1.1:-58437405 | MS.gene86830:CDS |
| GATATCCATAACAACAACAA+AGG | 0.628535 | 1.1:+58439783 | None:intergenic |
| TGAGGTCACTGGAACAATGA+TGG | 0.628803 | 1.1:-58438022 | MS.gene86830:CDS |
| AGATCTGTGGAAGACTCGAC+CGG | 0.630222 | 1.1:-58436597 | MS.gene86830:CDS |
| TTATTAGCACATGCTGACAA+TGG | 0.637025 | 1.1:+58436657 | None:intergenic |
| TGATCAAGGGCTAGTGACCA+AGG | 0.638516 | 1.1:-58436466 | MS.gene86830:CDS |
| GGGATTGAGGAGTATAGTGA+CGG | 0.640769 | 1.1:-58439364 | MS.gene86830:CDS |
| ACCGTTCTACTGCGATACTG+TGG | 0.641157 | 1.1:+58438150 | None:intergenic |
| TTCAACTATTCAAGAGTGTG+AGG | 0.641287 | 1.1:-58438040 | MS.gene86830:CDS |
| ACCACAGTATCGCAGTAGAA+CGG | 0.641569 | 1.1:-58438151 | MS.gene86830:CDS |
| TGGAACAATGATGGTGCAGT+GGG | 0.643324 | 1.1:-58438013 | MS.gene86830:CDS |
| CATGTCACGTGCAGTTCTGG+TGG | 0.645188 | 1.1:-58439399 | MS.gene86830:intron |
| GTTCTACTGCGATACTGTGG+TGG | 0.646637 | 1.1:+58438153 | None:intergenic |
| GGAGTTCGTCAGGGTATGTG+GGG | 0.647398 | 1.1:-58436741 | MS.gene86830:CDS |
| AGCTTGGCGTAGGGACCAAG+AGG | 0.653449 | 1.1:-58439241 | MS.gene86830:intron |
| GTGGAGCTATGAACGTAACA+AGG | 0.654092 | 1.1:+58439752 | None:intergenic |
| AGCTCTGAATCATTAAACCA+AGG | 0.662274 | 1.1:+58439619 | None:intergenic |
| ACATGCTGACAATGGAACGC+CGG | 0.666475 | 1.1:+58436665 | None:intergenic |
| GCTAAGCTTGGAGTTCGTCA+GGG | 0.670012 | 1.1:-58436750 | MS.gene86830:CDS |
| TGCTGATTACGTGAGATCTG+TGG | 0.675039 | 1.1:-58436610 | MS.gene86830:CDS |
| TTGTATTTGGAATAGCCCGA+CGG | 0.676217 | 1.1:-58436440 | MS.gene86830:CDS |
| TCAAGGGCTAGTGACCAAGG+CGG | 0.799326 | 1.1:-58436463 | MS.gene86830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAATTATAGTC+TGG | - | chr1.1:58437199-58437218 | MS.gene86830:intron | 10.0% |
| !! | TAATAGCTAATATATTAAAT+AGG | + | chr1.1:58438693-58438712 | None:intergenic | 10.0% |
| !! | TTGTAAAATAGAATTTAAAT+AGG | + | chr1.1:58437536-58437555 | None:intergenic | 10.0% |
| !! | TTTATTACTATTACTATTAT+TGG | + | chr1.1:58437651-58437670 | None:intergenic | 10.0% |
| !! | AATAATAATTCAATGAAATC+AGG | + | chr1.1:58437005-58437024 | None:intergenic | 15.0% |
| !! | ATAATTTAAGCAACTAAAAT+TGG | + | chr1.1:58437080-58437099 | None:intergenic | 15.0% |
| !! | CTTATTAATTTAAGTAATTG+CGG | - | chr1.1:58439304-58439323 | MS.gene86830:CDS | 15.0% |
| !! | GTTTAAATTATTGAAAATGT+TGG | - | chr1.1:58437589-58437608 | MS.gene86830:intron | 15.0% |
| !!! | CACTATTTAAATATTGATTT+AGG | - | chr1.1:58437559-58437578 | MS.gene86830:intron | 15.0% |
| !!! | CATTTTACATTTATTTTAGT+AGG | - | chr1.1:58437676-58437695 | MS.gene86830:intron | 15.0% |
| !! | AATTTAGTTGCTAAAATTGT+AGG | + | chr1.1:58437980-58437999 | None:intergenic | 20.0% |
| !! | ATTTAGTTGCTAAAATTGTA+GGG | + | chr1.1:58437979-58437998 | None:intergenic | 20.0% |
| !! | TAAGAATTTAATGATTCCTT+TGG | + | chr1.1:58439288-58439307 | None:intergenic | 20.0% |
| !! | TTTCATCAACATTGTTATAA+TGG | - | chr1.1:58438548-58438567 | MS.gene86830:intron | 20.0% |
| !!! | CAATTCATTTTTCTTAATCT+TGG | - | chr1.1:58439026-58439045 | MS.gene86830:intron | 20.0% |
| !!! | CATTTTTTTTCTTTTCTACA+TGG | - | chr1.1:58439258-58439277 | MS.gene86830:CDS | 20.0% |
| ! | AACATTGTACATATACACAT+TGG | + | chr1.1:58438996-58439015 | None:intergenic | 25.0% |
| ! | AATGATATTAAAAAGGAACC+TGG | + | chr1.1:58436648-58436667 | None:intergenic | 25.0% |
| ! | ACTCTATAAAGTCAAAAGAA+TGG | + | chr1.1:58438468-58438487 | None:intergenic | 25.0% |
| ! | ACTGATATAGATCAAAATAG+GGG | + | chr1.1:58437847-58437866 | None:intergenic | 25.0% |
| ! | AGCGTATTAAACTAACTTAT+CGG | - | chr1.1:58438650-58438669 | MS.gene86830:intron | 25.0% |
| ! | AGTGATAGAGAATATATCAT+AGG | - | chr1.1:58438343-58438362 | MS.gene86830:intron | 25.0% |
| ! | ATGTGGTTATTGTTTCATAT+GGG | - | chr1.1:58436730-58436749 | MS.gene86830:CDS | 25.0% |
| ! | CAATATTATGGAGAAAATTG+AGG | + | chr1.1:58439164-58439183 | None:intergenic | 25.0% |
| ! | CAGTGCTAATGATATTAAAA+AGG | + | chr1.1:58436655-58436674 | None:intergenic | 25.0% |
| ! | CTCTATAAAGTCAAAAGAAT+GGG | + | chr1.1:58438467-58438486 | None:intergenic | 25.0% |
| ! | GACTGATATAGATCAAAATA+GGG | + | chr1.1:58437848-58437867 | None:intergenic | 25.0% |
| ! | GTTTCATATGAATGATAGAA+CGG | - | chr1.1:58439208-58439227 | MS.gene86830:intron | 25.0% |
| ! | TATTTATCCTAAGTTGTTCT+CGG | + | chr1.1:58437172-58437191 | None:intergenic | 25.0% |
| ! | TGTGTACATATTGAAACTAT+CGG | - | chr1.1:58438949-58438968 | MS.gene86830:intron | 25.0% |
| ! | TTCTCCATAATATTGTTAAC+TGG | - | chr1.1:58439169-58439188 | MS.gene86830:intron | 25.0% |
| ! | TTCTTTCACTATGAAGATAT+GGG | - | chr1.1:58439420-58439439 | MS.gene86830:intron | 25.0% |
| ! | TTGATCCTAATAACTATTCT+TGG | - | chr1.1:58436540-58436559 | MS.gene86830:CDS | 25.0% |
| ! | TTTCATATGAATGATAGAAC+GGG | - | chr1.1:58439209-58439228 | MS.gene86830:intron | 25.0% |
| ! | TTTGCAAAATTTGTGTAAGT+TGG | - | chr1.1:58436875-58436894 | MS.gene86830:intron | 25.0% |
| !! | AATTTTACGGATCAATTGAT+TGG | + | chr1.1:58437879-58437898 | None:intergenic | 25.0% |
| !! | AATTTTCTCAATCTTTTGAG+AGG | - | chr1.1:58438725-58438744 | MS.gene86830:intron | 25.0% |
| !! | TTTTAATCAAATGCGTGTTT+GGG | - | chr1.1:58436679-58436698 | MS.gene86830:CDS | 25.0% |
| !! | TTTTTCTTAATCTTGGTCAT+TGG | - | chr1.1:58439033-58439052 | MS.gene86830:intron | 25.0% |
| !!! | ATTGGATTAGATTTTGTATG+TGG | + | chr1.1:58437633-58437652 | None:intergenic | 25.0% |
| !!! | GTTACTTTTGTTTGTTAGAA+TGG | - | chr1.1:58438032-58438051 | MS.gene86830:CDS | 25.0% |
| !!! | TAGCATAGTAGAATTTTGAT+AGG | - | chr1.1:58439089-58439108 | MS.gene86830:intron | 25.0% |
| !!! | TTACATTTATTTTAGTAGGC+CGG | - | chr1.1:58437680-58437699 | MS.gene86830:intron | 25.0% |
| !!! | TTATATTTCTAGTCAACTTG+TGG | - | chr1.1:58438759-58438778 | MS.gene86830:intron | 25.0% |
| AATCATTTGTACCAATTGCA+AGG | + | chr1.1:58439137-58439156 | None:intergenic | 30.0% | |
| AATTATAGTCTGGTATGACT+TGG | - | chr1.1:58437209-58437228 | MS.gene86830:intron | 30.0% | |
| ACGTACGTATAAGAAAGAAA+GGG | - | chr1.1:58439518-58439537 | MS.gene86830:intron | 30.0% | |
| CATGTGGTTATTGTTTCATA+TGG | - | chr1.1:58436729-58436748 | MS.gene86830:CDS | 30.0% | |
| CCAGTTAAATCAAGAAAAGA+TGG | - | chr1.1:58439372-58439391 | MS.gene86830:CDS | 30.0% | |
| GATATCCATAACAACAACAA+AGG | + | chr1.1:58436429-58436448 | None:intergenic | 30.0% | |
| GATCAATTGATTGGTACAAA+AGG | + | chr1.1:58437870-58437889 | None:intergenic | 30.0% | |
| GATGCCAGTTAACAATATTA+TGG | + | chr1.1:58439176-58439195 | None:intergenic | 30.0% | |
| GGACTGATATAGATCAAAAT+AGG | + | chr1.1:58437849-58437868 | None:intergenic | 30.0% | |
| GTACTCCAAGAATAGTTATT+AGG | + | chr1.1:58436548-58436567 | None:intergenic | 30.0% | |
| GTTCTTTCACTATGAAGATA+TGG | - | chr1.1:58439419-58439438 | MS.gene86830:intron | 30.0% | |
| TAATATAGATCTACCCGTTT+AGG | + | chr1.1:58438839-58438858 | None:intergenic | 30.0% | |
| TACGTACGTATAAGAAAGAA+AGG | - | chr1.1:58439517-58439536 | MS.gene86830:intron | 30.0% | |
| TATAAGAAAGAAAGGGATTC+CGG | - | chr1.1:58439525-58439544 | MS.gene86830:intron | 30.0% | |
| TCTGATATCTAACATGTCTT+TGG | - | chr1.1:58437498-58437517 | MS.gene86830:intron | 30.0% | |
| TGTGGTTATTGTTTCATATG+GGG | - | chr1.1:58436731-58436750 | MS.gene86830:CDS | 30.0% | |
| TTAATTATCCATGGACACTA+TGG | + | chr1.1:58438513-58438532 | None:intergenic | 30.0% | |
| TTGCAATTGGTACAAATGAT+TGG | - | chr1.1:58439136-58439155 | MS.gene86830:intron | 30.0% | |
| TTTAATCAAATGCGTGTTTG+GGG | - | chr1.1:58436680-58436699 | MS.gene86830:CDS | 30.0% | |
| ! | CCATCTTTTCTTGATTTAAC+TGG | + | chr1.1:58439375-58439394 | None:intergenic | 30.0% |
| ! | CTTTTAATCAAATGCGTGTT+TGG | - | chr1.1:58436678-58436697 | MS.gene86830:CDS | 30.0% |
| ! | GATCGAGAATGTTCAAATTT+TGG | - | chr1.1:58437918-58437937 | MS.gene86830:intron | 30.0% |
| ! | GTTGTTGTTATGGATATCTT+GGG | - | chr1.1:58436431-58436450 | MS.gene86830:CDS | 30.0% |
| ! | TGTTGTTGTTATGGATATCT+TGG | - | chr1.1:58436430-58436449 | MS.gene86830:CDS | 30.0% |
| !! | AATTCTACTATGCTAGCTTT+CGG | + | chr1.1:58439084-58439103 | None:intergenic | 30.0% |
| !! | CAAAATTTGTGTAAGTTGGT+TGG | - | chr1.1:58436879-58436898 | MS.gene86830:intron | 30.0% |
| !! | GAATTCCTTTGTTGTTGTTA+TGG | - | chr1.1:58436421-58436440 | MS.gene86830:CDS | 30.0% |
| !!! | GTAGGCTTAAAAAGCTTTTT+TGG | - | chr1.1:58437707-58437726 | MS.gene86830:intron | 30.0% |
| AAAGCAATTGAACTATGACC+TGG | - | chr1.1:58437361-58437380 | MS.gene86830:CDS | 35.0% | |
| AACTTACTACTGTGTGACTA+AGG | - | chr1.1:58438390-58438409 | MS.gene86830:intron | 35.0% | |
| AAGATAACAGCAATCCAAAG+TGG | + | chr1.1:58436479-58436498 | None:intergenic | 35.0% | |
| ATATCATAGGTCGTCGAATT+TGG | - | chr1.1:58438356-58438375 | MS.gene86830:intron | 35.0% | |
| ATCAAAATAGGGGTGAGAAT+AGG | + | chr1.1:58437837-58437856 | None:intergenic | 35.0% | |
| ATTAAAAAGGAACCTGGTTG+CGG | + | chr1.1:58436642-58436661 | None:intergenic | 35.0% | |
| ATTAGGATCAATAGCCCATT+TGG | + | chr1.1:58436531-58436550 | None:intergenic | 35.0% | |
| CAATTGACATGTCCATAGAA+GGG | + | chr1.1:58438428-58438447 | None:intergenic | 35.0% | |
| CCATGGATAATTAACCAACT+AGG | - | chr1.1:58438519-58438538 | MS.gene86830:intron | 35.0% | |
| CCTAGTTGGTTAATTATCCA+TGG | + | chr1.1:58438522-58438541 | None:intergenic | 35.0% | |
| CCTATTTAGCTAAACAGATC+AGG | + | chr1.1:58437743-58437762 | None:intergenic | 35.0% | |
| CCTGATCTGTTTAGCTAAAT+AGG | - | chr1.1:58437740-58437759 | MS.gene86830:intron | 35.0% | |
| GATCCGTAAAATTGTACAGT+AGG | - | chr1.1:58437886-58437905 | MS.gene86830:intron | 35.0% | |
| GGTTTACAACACAAAACACA+AGG | + | chr1.1:58438245-58438264 | None:intergenic | 35.0% | |
| TAAACTGTCAATTACCTGCA+CGG | + | chr1.1:58438877-58438896 | None:intergenic | 35.0% | |
| TATCATAGGTCGTCGAATTT+GGG | - | chr1.1:58438357-58438376 | MS.gene86830:intron | 35.0% | |
| TCAAACTGAACCGTACTAAA+CGG | - | chr1.1:58437249-58437268 | MS.gene86830:intron | 35.0% | |
| TCACACTTATACCTTGCAAT+TGG | - | chr1.1:58439123-58439142 | MS.gene86830:intron | 35.0% | |
| TCTCTATCACTGCAAAAGAA+GGG | + | chr1.1:58438334-58438353 | None:intergenic | 35.0% | |
| TGATGAAAAAGCTACCTAGT+TGG | + | chr1.1:58438536-58438555 | None:intergenic | 35.0% | |
| TTACTTCGTAGTCATAGCTA+AGG | + | chr1.1:58438266-58438285 | None:intergenic | 35.0% | |
| TTAGATGATACTTGCGTGTT+CGG | - | chr1.1:58437026-58437045 | MS.gene86830:intron | 35.0% | |
| TTAGGATCAATAGCCCATTT+GGG | + | chr1.1:58436530-58436549 | None:intergenic | 35.0% | |
| TTATTAGCACATGCTGACAA+TGG | + | chr1.1:58439555-58439574 | None:intergenic | 35.0% | |
| TTCTCTATCACTGCAAAAGA+AGG | + | chr1.1:58438335-58438354 | None:intergenic | 35.0% | |
| ! | AACTGGCATCTTAGTGATTT+TGG | - | chr1.1:58439186-58439205 | MS.gene86830:intron | 35.0% |
| ! | AAGTTGGTTGGAGAAAAAGA+TGG | - | chr1.1:58436891-58436910 | MS.gene86830:intron | 35.0% |
| ! | AGTTGGTTAGGGATTTCTTT+TGG | - | chr1.1:58438102-58438121 | MS.gene86830:CDS | 35.0% |
| ! | ATACCTAAGCTTCTAGTTGT+TGG | - | chr1.1:58439693-58439712 | MS.gene86830:CDS | 35.0% |
| ! | CTTTGGATTGCTGTTATCTT+CGG | - | chr1.1:58436479-58436498 | MS.gene86830:CDS | 35.0% |
| ! | GTGCCTACTGTACAATTTTA+CGG | + | chr1.1:58437892-58437911 | None:intergenic | 35.0% |
| ! | GTTGGTTAGGGATTTCTTTT+GGG | - | chr1.1:58438103-58438122 | MS.gene86830:CDS | 35.0% |
| ! | TCTTCAAGTTTCGAATTCCT+TGG | - | chr1.1:58436573-58436592 | MS.gene86830:CDS | 35.0% |
| ! | TTCAACTATTCAAGAGTGTG+AGG | - | chr1.1:58438169-58438188 | MS.gene86830:intron | 35.0% |
| ! | TTTTCTACATGGTATGCCAA+AGG | - | chr1.1:58439269-58439288 | MS.gene86830:CDS | 35.0% |
| !! | AGCTCTGAATCATTAAACCA+AGG | + | chr1.1:58436593-58436612 | None:intergenic | 35.0% |
| !! | ATATGCTCTAAAGACGTGTT+AGG | + | chr1.1:58437445-58437464 | None:intergenic | 35.0% |
| !!! | GGCTTAAAAAGCTTTTTTGG+TGG | - | chr1.1:58437710-58437729 | MS.gene86830:intron | 35.0% |
| !!! | TCTTTTGGGATGATGAGTTT+CGG | - | chr1.1:58438117-58438136 | MS.gene86830:CDS | 35.0% |
| AAGAAATCCCTAACCAACTC+AGG | + | chr1.1:58438101-58438120 | None:intergenic | 40.0% | |
| AGAAACCTATGGCTTAGCTT+AGG | + | chr1.1:58437800-58437819 | None:intergenic | 40.0% | |
| AGATATTGCCATAGTGTCCA+TGG | - | chr1.1:58438502-58438521 | MS.gene86830:intron | 40.0% | |
| AGCCATAGGTTTCTGTCAAT+CGG | - | chr1.1:58437806-58437825 | MS.gene86830:intron | 40.0% | |
| ATGAAGATATGGGCATACCT+TGG | - | chr1.1:58439430-58439449 | MS.gene86830:intron | 40.0% | |
| ATGTCCATAGAAGGGAAACT+GGG | + | chr1.1:58438420-58438439 | None:intergenic | 40.0% | |
| CAAACATGACTTACCAAGCT+TGG | - | chr1.1:58436952-58436971 | MS.gene86830:intron | 40.0% | |
| CAAGCTTGGTAAGTCATGTT+TGG | + | chr1.1:58436954-58436973 | None:intergenic | 40.0% | |
| CAGGAGTAAGAAATACCTCT+TGG | + | chr1.1:58436986-58437005 | None:intergenic | 40.0% | |
| CCTACATTGGGTTATTTGAG+CGG | - | chr1.1:58437304-58437323 | MS.gene86830:intron | 40.0% | |
| CGTACTAAACGGTTCAAAAC+CGG | - | chr1.1:58437260-58437279 | MS.gene86830:intron | 40.0% | |
| CTTAACCTAAGCTAAGCCAT+AGG | - | chr1.1:58437792-58437811 | MS.gene86830:intron | 40.0% | |
| GAATGGGCAACTTAATCTCA+TGG | + | chr1.1:58438451-58438470 | None:intergenic | 40.0% | |
| GACGTGTTAGGTATCAGAAT+AGG | + | chr1.1:58437433-58437452 | None:intergenic | 40.0% | |
| GCAATTGACATGTCCATAGA+AGG | + | chr1.1:58438429-58438448 | None:intergenic | 40.0% | |
| GCTTAGCTTAGGTTAAGCTT+AGG | + | chr1.1:58437789-58437808 | None:intergenic | 40.0% | |
| GTCAGTCTAGTGATGAGAAT+TGG | - | chr1.1:58437141-58437160 | MS.gene86830:intron | 40.0% | |
| GTGAAAGTGAAAAGGGATTG+AGG | - | chr1.1:58436832-58436851 | MS.gene86830:CDS | 40.0% | |
| GTGTCTGTTCACAGTTAAAC+CGG | + | chr1.1:58437282-58437301 | None:intergenic | 40.0% | |
| TACTTTGTTCCTCCATACCA+AGG | - | chr1.1:58438804-58438823 | MS.gene86830:intron | 40.0% | |
| TATTCCAAATACAACCGCCT+TGG | + | chr1.1:58439763-58439782 | None:intergenic | 40.0% | |
| TCCAGGATCAAACTTCTTGA+CGG | + | chr1.1:58439496-58439515 | None:intergenic | 40.0% | |
| TCTTCTGATGACAAACCGAT+CGG | - | chr1.1:58439663-58439682 | MS.gene86830:CDS | 40.0% | |
| TGAAGATATGGGCATACCTT+GGG | - | chr1.1:58439431-58439450 | MS.gene86830:intron | 40.0% | |
| TGGCGTATTTCACTTCTTCA+GGG | - | chr1.1:58438779-58438798 | MS.gene86830:intron | 40.0% | |
| TTACGTTCATAGCTCCACTT+TGG | - | chr1.1:58436462-58436481 | MS.gene86830:CDS | 40.0% | |
| TTCTTATACGTACGTAGTCC+AGG | + | chr1.1:58439513-58439532 | None:intergenic | 40.0% | |
| TTGGTTGGAGAAAAAGATGG+TGG | - | chr1.1:58436894-58436913 | MS.gene86830:intron | 40.0% | |
| ! | TCTGGTGGTGAAAGTGAAAA+GGG | - | chr1.1:58436825-58436844 | MS.gene86830:CDS | 40.0% |
| ! | TTCCGAATTTTCCAAACCGT+CGG | + | chr1.1:58439788-58439807 | None:intergenic | 40.0% |
| ! | TTCTGGTGGTGAAAGTGAAA+AGG | - | chr1.1:58436824-58436843 | MS.gene86830:CDS | 40.0% |
| ! | TTGTATTTGGAATAGCCCGA+CGG | - | chr1.1:58439769-58439788 | MS.gene86830:CDS | 40.0% |
| !! | GCTTTTTAAGCCTACTAGAC+CGG | + | chr1.1:58437702-58437721 | None:intergenic | 40.0% |
| !! | GTTATCTTCGGTGTTGTTGT+TGG | - | chr1.1:58436491-58436510 | MS.gene86830:CDS | 40.0% |
| !!! | CGGTTTTGAACCGTTTAGTA+CGG | + | chr1.1:58437262-58437281 | None:intergenic | 40.0% |
| AAGGCAGAGCAAACCTAAAC+GGG | - | chr1.1:58438823-58438842 | MS.gene86830:intron | 45.0% | |
| ACACGCATCTGTTGCATATG+TGG | - | chr1.1:58439348-58439367 | MS.gene86830:CDS | 45.0% | |
| ACACTTCACATGAAGTCAGC+TGG | + | chr1.1:58439398-58439417 | None:intergenic | 45.0% | |
| ACCACAGTATCGCAGTAGAA+CGG | - | chr1.1:58438058-58438077 | MS.gene86830:CDS | 45.0% | |
| ACCAGCTTGGATTCAGATGA+TGG | - | chr1.1:58436917-58436936 | MS.gene86830:intron | 45.0% | |
| AGCTAAACAGATCAGGCTAC+TGG | + | chr1.1:58437736-58437755 | None:intergenic | 45.0% | |
| ATCCTAAGTTGTTCTCGGCT+TGG | + | chr1.1:58437167-58437186 | None:intergenic | 45.0% | |
| CAACACAACACTGACACATG+TGG | - | chr1.1:58436713-58436732 | MS.gene86830:CDS | 45.0% | |
| CAAGGCAGAGCAAACCTAAA+CGG | - | chr1.1:58438822-58438841 | MS.gene86830:intron | 45.0% | |
| CACATGTGTCAGTGTTGTGT+TGG | + | chr1.1:58436715-58436734 | None:intergenic | 45.0% | |
| CATGTCCATAGAAGGGAAAC+TGG | + | chr1.1:58438421-58438440 | None:intergenic | 45.0% | |
| CCGCTCAAATAACCCAATGT+AGG | + | chr1.1:58437307-58437326 | None:intergenic | 45.0% | |
| CCTGTTGGAGACTGAAAATC+AGG | - | chr1.1:58439638-58439657 | MS.gene86830:CDS | 45.0% | |
| CTTCTGATGACAAACCGATC+GGG | - | chr1.1:58439664-58439683 | MS.gene86830:CDS | 45.0% | |
| GAACAGACACTGCCTACATT+GGG | - | chr1.1:58437292-58437311 | MS.gene86830:intron | 45.0% | |
| GACCGATTGACAGAAACCTA+TGG | + | chr1.1:58437811-58437830 | None:intergenic | 45.0% | |
| GCTTCAAAACCAACCTGGTT+TGG | - | chr1.1:58436610-58436629 | MS.gene86830:CDS | 45.0% | |
| GGTTTGGAAAATTCGGAAGG+AGG | - | chr1.1:58439790-58439809 | MS.gene86830:CDS | 45.0% | |
| GTACTGCAAAGTATGCTGCA+TGG | - | chr1.1:58438600-58438619 | MS.gene86830:intron | 45.0% | |
| GTGGAGCTATGAACGTAACA+AGG | + | chr1.1:58436460-58436479 | None:intergenic | 45.0% | |
| GTGGCGTATTTCACTTCTTC+AGG | - | chr1.1:58438778-58438797 | MS.gene86830:intron | 45.0% | |
| TATGCCCAGTTTCCCTTCTA+TGG | - | chr1.1:58438413-58438432 | MS.gene86830:intron | 45.0% | |
| TCAGAGCTTCAAAACCAACC+TGG | - | chr1.1:58436605-58436624 | MS.gene86830:CDS | 45.0% | |
| TCCATCATCTGAATCCAAGC+TGG | + | chr1.1:58436921-58436940 | None:intergenic | 45.0% | |
| TGAACAGACACTGCCTACAT+TGG | - | chr1.1:58437291-58437310 | MS.gene86830:intron | 45.0% | |
| TGAGGTCACTGGAACAATGA+TGG | - | chr1.1:58438187-58438206 | MS.gene86830:intron | 45.0% | |
| TGCGTGTTCGGTTATCTAGT+TGG | - | chr1.1:58437038-58437057 | MS.gene86830:intron | 45.0% | |
| TTAGGTATGCTTCTCCCGAT+CGG | + | chr1.1:58439681-58439700 | None:intergenic | 45.0% | |
| TTATTTGAGCGGTTCAACCG+TGG | - | chr1.1:58437315-58437334 | MS.gene86830:intron | 45.0% | |
| TTCAGTCTCCAACAGGTTAC+CGG | + | chr1.1:58439634-58439653 | None:intergenic | 45.0% | |
| TTGGGCTTGGAAACCCAAAT+GGG | - | chr1.1:58436514-58436533 | MS.gene86830:CDS | 45.0% | |
| TTGTTTCATATGGGGCAGTG+TGG | - | chr1.1:58436739-58436758 | MS.gene86830:CDS | 45.0% | |
| ! | ATTCAAGAGTGTGAGGTCAC+TGG | - | chr1.1:58438176-58438195 | MS.gene86830:intron | 45.0% |
| ! | CCTAAGCTTCTAGTTGTTGG+CGG | - | chr1.1:58439696-58439715 | MS.gene86830:CDS | 45.0% |
| ! | CCTGATTTTCAGTCTCCAAC+AGG | + | chr1.1:58439641-58439660 | None:intergenic | 45.0% |
| ! | CTAAGCTTCTAGTTGTTGGC+GGG | - | chr1.1:58439697-58439716 | MS.gene86830:CDS | 45.0% |
| ! | GACGGTTTGGAAAATTCGGA+AGG | - | chr1.1:58439787-58439806 | MS.gene86830:CDS | 45.0% |
| ! | GGGATTGAGGAGTATAGTGA+CGG | - | chr1.1:58436845-58436864 | MS.gene86830:intron | 45.0% |
| ! | TAAGCTTCTAGTTGTTGGCG+GGG | - | chr1.1:58439698-58439717 | MS.gene86830:CDS | 45.0% |
| ! | TCAAGCTTTTGTATCCGTGC+AGG | - | chr1.1:58438860-58438879 | MS.gene86830:intron | 45.0% |
| ! | TCCGAATTTTCCAAACCGTC+GGG | + | chr1.1:58439787-58439806 | None:intergenic | 45.0% |
| ! | TGCTGATTACGTGAGATCTG+TGG | - | chr1.1:58439599-58439618 | MS.gene86830:CDS | 45.0% |
| ! | TGGAACAATGATGGTGCAGT+GGG | - | chr1.1:58438196-58438215 | MS.gene86830:intron | 45.0% |
| ! | TTTTAGTAGGCCGGTCTAGT+AGG | - | chr1.1:58437689-58437708 | MS.gene86830:intron | 45.0% |
| !! | AAAAAGATGGTGGACCAGCT+TGG | - | chr1.1:58436904-58436923 | MS.gene86830:intron | 45.0% |
| !! | CTTCGGTGTTGTTGTTGGTT+GGG | - | chr1.1:58436496-58436515 | MS.gene86830:CDS | 45.0% |
| !! | TCTTCGGTGTTGTTGTTGGT+TGG | - | chr1.1:58436495-58436514 | MS.gene86830:CDS | 45.0% |
| !!! | ATTAAAAAACAATTTTATTA+TGG | - | chr1.1:58439056-58439075 | MS.gene86830:intron | 5.0% |
| ACATGCTGACAATGGAACGC+CGG | + | chr1.1:58439547-58439566 | None:intergenic | 50.0% | |
| ACCGTTCTACTGCGATACTG+TGG | + | chr1.1:58438062-58438081 | None:intergenic | 50.0% | |
| AGATCTGTGGAAGACTCGAC+CGG | - | chr1.1:58439612-58439631 | MS.gene86830:CDS | 50.0% | |
| ATCCAAACCCGAAACCAAGC+CGG | + | chr1.1:58437395-58437414 | None:intergenic | 50.0% | |
| ATGATGAGTTTCGGTCGAGG+TGG | - | chr1.1:58438126-58438145 | MS.gene86830:CDS | 50.0% | |
| CCAAGCTTAGCGATTTCCCA+AGG | + | chr1.1:58439450-58439469 | None:intergenic | 50.0% | |
| CCGCCAACAACTAGAAGCTT+AGG | + | chr1.1:58439699-58439718 | None:intergenic | 50.0% | |
| CCTTGGGAAATCGCTAAGCT+TGG | - | chr1.1:58439447-58439466 | MS.gene86830:intron | 50.0% | |
| CTATGACCTGGAGTTCTCAC+CGG | - | chr1.1:58437373-58437392 | MS.gene86830:CDS | 50.0% | |
| CTCGAACCTGGACAAAACCA+CGG | + | chr1.1:58437335-58437354 | None:intergenic | 50.0% | |
| GACTTACCAAGCTTGGCGTA+GGG | - | chr1.1:58436959-58436978 | MS.gene86830:intron | 50.0% | |
| GCCGTCAAGAAGTTTGATCC+TGG | - | chr1.1:58439492-58439511 | MS.gene86830:intron | 50.0% | |
| GCTAAGCTTGGAGTTCGTCA+GGG | - | chr1.1:58439459-58439478 | MS.gene86830:intron | 50.0% | |
| GGTCACTAGCCCTTGATCAA+GGG | + | chr1.1:58439742-58439761 | None:intergenic | 50.0% | |
| GTGACCAAGGCGGTTGTATT+TGG | - | chr1.1:58439756-58439775 | MS.gene86830:CDS | 50.0% | |
| GTTCTACTGCGATACTGTGG+TGG | + | chr1.1:58438059-58438078 | None:intergenic | 50.0% | |
| GTTGGGCTTGGAAACCCAAA+TGG | - | chr1.1:58436513-58436532 | MS.gene86830:CDS | 50.0% | |
| TGAAGATGCGAGTCCTGAGT+TGG | - | chr1.1:58438085-58438104 | MS.gene86830:CDS | 50.0% | |
| TGACTTACCAAGCTTGGCGT+AGG | - | chr1.1:58436958-58436977 | MS.gene86830:intron | 50.0% | |
| TGATGAGTTTCGGTCGAGGT+GGG | - | chr1.1:58438127-58438146 | MS.gene86830:CDS | 50.0% | |
| TGGAGTTCGTCAGGGTATGT+GGG | - | chr1.1:58439467-58439486 | MS.gene86830:intron | 50.0% | |
| TGGTCACTAGCCCTTGATCA+AGG | + | chr1.1:58439743-58439762 | None:intergenic | 50.0% | |
| TTGCCTGCACCCTTGATCAA+GGG | - | chr1.1:58439730-58439749 | MS.gene86830:CDS | 50.0% | |
| TTGGAGTTCGTCAGGGTATG+TGG | - | chr1.1:58439466-58439485 | MS.gene86830:intron | 50.0% | |
| TTTGCTCTGCCTTGGTATGG+AGG | + | chr1.1:58438816-58438835 | None:intergenic | 50.0% | |
| ! | AGGTTTGCTCTGCCTTGGTA+TGG | + | chr1.1:58438819-58438838 | None:intergenic | 50.0% |
| ! | CGGAGTATTCCAAACCAGGT+TGG | + | chr1.1:58436622-58436641 | None:intergenic | 50.0% |
| ! | CGTTTAGGTTTGCTCTGCCT+TGG | + | chr1.1:58438824-58438843 | None:intergenic | 50.0% |
| ! | CTGGAACAATGATGGTGCAG+TGG | - | chr1.1:58438195-58438214 | MS.gene86830:intron | 50.0% |
| ! | GCCCGACGGTTTGGAAAATT+CGG | - | chr1.1:58439783-58439802 | MS.gene86830:CDS | 50.0% |
| ! | GTGTTGTTGTTGGTTGGGCT+TGG | - | chr1.1:58436501-58436520 | MS.gene86830:CDS | 50.0% |
| ! | GTTGCGGAGTATTCCAAACC+AGG | + | chr1.1:58436626-58436645 | None:intergenic | 50.0% |
| ! | GTTTGGAATACTCCGCAACC+AGG | - | chr1.1:58436627-58436646 | MS.gene86830:CDS | 50.0% |
| ! | TAGGGTGCTCTCAACGAACT+TGG | + | chr1.1:58437961-58437980 | None:intergenic | 50.0% |
| ! | TGATCAAGGGCTAGTGACCA+AGG | - | chr1.1:58439743-58439762 | MS.gene86830:CDS | 50.0% |
| ! | TGCTTTAAACCGCTCGAACC+TGG | + | chr1.1:58437347-58437366 | None:intergenic | 50.0% |
| ! | TTGATCAAGGGTGCAGGCAA+GGG | + | chr1.1:58439730-58439749 | None:intergenic | 50.0% |
| ! | TTTGGAATAGCCCGACGGTT+TGG | - | chr1.1:58439774-58439793 | MS.gene86830:CDS | 50.0% |
| !! | AGTTCTCACCGGCTTGGTTT+CGG | - | chr1.1:58437384-58437403 | MS.gene86830:CDS | 50.0% |
| !! | ATGCGAGTCCTGAGTTGGTT+AGG | - | chr1.1:58438090-58438109 | MS.gene86830:CDS | 50.0% |
| !! | TGCGAGTCCTGAGTTGGTTA+GGG | - | chr1.1:58438091-58438110 | MS.gene86830:CDS | 50.0% |
| !!! | GTTCAACCGTGGTTTTGTCC+AGG | - | chr1.1:58437326-58437345 | MS.gene86830:intron | 50.0% |
| !!! | TGGTTTTGTCCAGGTTCGAG+CGG | - | chr1.1:58437335-58437354 | MS.gene86830:intron | 50.0% |
| AGACTCGACCGGTAACCTGT+TGG | - | chr1.1:58439623-58439642 | MS.gene86830:CDS | 55.0% | |
| CGCTAAGCTTGGAGTTCGTC+AGG | - | chr1.1:58439458-58439477 | MS.gene86830:intron | 55.0% | |
| CTTGCCTGCACCCTTGATCA+AGG | - | chr1.1:58439729-58439748 | MS.gene86830:CDS | 55.0% | |
| GGAGTTCGTCAGGGTATGTG+GGG | - | chr1.1:58439468-58439487 | MS.gene86830:intron | 55.0% | |
| GGCCAAGCCGAGAACAACTT+AGG | - | chr1.1:58437162-58437181 | MS.gene86830:intron | 55.0% | |
| GGGATGATGAGTTTCGGTCG+AGG | - | chr1.1:58438123-58438142 | MS.gene86830:CDS | 55.0% | |
| GTGCATGTCACGTGCAGTTC+TGG | - | chr1.1:58436807-58436826 | MS.gene86830:CDS | 55.0% | |
| ! | CATGTCACGTGCAGTTCTGG+TGG | - | chr1.1:58436810-58436829 | MS.gene86830:CDS | 55.0% |
| ! | CTTGATCAAGGGTGCAGGCA+AGG | + | chr1.1:58439731-58439750 | None:intergenic | 55.0% |
| ! | TAGCCCTTGATCAAGGGTGC+AGG | + | chr1.1:58439736-58439755 | None:intergenic | 55.0% |
| ! | TCAAGGGCTAGTGACCAAGG+CGG | - | chr1.1:58439746-58439765 | MS.gene86830:CDS | 55.0% |
| !! | GTTCTCACCGGCTTGGTTTC+GGG | - | chr1.1:58437385-58437404 | MS.gene86830:CDS | 55.0% |
| ACCAAGCCGGTGAGAACTCC+AGG | + | chr1.1:58437382-58437401 | None:intergenic | 60.0% | |
| AGCTTGGCGTAGGGACCAAG+AGG | - | chr1.1:58436968-58436987 | MS.gene86830:intron | 60.0% | |
| CTTGGTCCCTACGCCAAGCT+TGG | + | chr1.1:58436968-58436987 | None:intergenic | 60.0% | |
| ! | AAGGGTGCAGGCAAGGGCAA+TGG | + | chr1.1:58439724-58439743 | None:intergenic | 60.0% |
| ! | ACCTGGAGTTCTCACCGGCT+TGG | - | chr1.1:58437378-58437397 | MS.gene86830:CDS | 60.0% |
| !! | CACCGGCTTGGTTTCGGGTT+TGG | - | chr1.1:58437390-58437409 | MS.gene86830:CDS | 60.0% |
| GATGGTGCAGTGGGTGCGCA+AGG | - | chr1.1:58438205-58438224 | MS.gene86830:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 58436413 | 58439818 | 58436413 | ID=MS.gene86830 |
| chr1.1 | mRNA | 58436413 | 58439818 | 58436413 | ID=MS.gene86830.t1;Parent=MS.gene86830 |
| chr1.1 | exon | 58439583 | 58439818 | 58439583 | ID=MS.gene86830.t1.exon1;Parent=MS.gene86830.t1 |
| chr1.1 | CDS | 58439583 | 58439818 | 58439583 | ID=cds.MS.gene86830.t1;Parent=MS.gene86830.t1 |
| chr1.1 | exon | 58439242 | 58439407 | 58439242 | ID=MS.gene86830.t1.exon2;Parent=MS.gene86830.t1 |
| chr1.1 | CDS | 58439242 | 58439407 | 58439242 | ID=cds.MS.gene86830.t1;Parent=MS.gene86830.t1 |
| chr1.1 | exon | 58438005 | 58438181 | 58438005 | ID=MS.gene86830.t1.exon3;Parent=MS.gene86830.t1 |
| chr1.1 | CDS | 58438005 | 58438181 | 58438005 | ID=cds.MS.gene86830.t1;Parent=MS.gene86830.t1 |
| chr1.1 | exon | 58437820 | 58437903 | 58437820 | ID=MS.gene86830.t1.exon4;Parent=MS.gene86830.t1 |
| chr1.1 | CDS | 58437820 | 58437903 | 58437820 | ID=cds.MS.gene86830.t1;Parent=MS.gene86830.t1 |
| chr1.1 | exon | 58437350 | 58437431 | 58437350 | ID=MS.gene86830.t1.exon5;Parent=MS.gene86830.t1 |
| chr1.1 | CDS | 58437350 | 58437431 | 58437350 | ID=cds.MS.gene86830.t1;Parent=MS.gene86830.t1 |
| chr1.1 | exon | 58436413 | 58436855 | 58436413 | ID=MS.gene86830.t1.exon6;Parent=MS.gene86830.t1 |
| chr1.1 | CDS | 58436413 | 58436855 | 58436413 | ID=cds.MS.gene86830.t1;Parent=MS.gene86830.t1 |
| Gene Sequence |
| Protein sequence |
