AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene06037


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06037.t1 MTR_8g099160 96.505 372 10 1 6 374 1 372 0.0 731
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 78 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATGCAGCTACTTAATTAA+AGG 0.214704 4.1:+4920049 MS.gene06037:intron
ATCCCAATACATAGGGAATT+TGG 0.221607 4.1:-4919640 None:intergenic
TACGAAATGGGTTTCTTAAT+AGG 0.229802 4.1:+4919489 MS.gene06037:CDS
GGCCATTGATCAACTTCTTT+GGG 0.265612 4.1:-4921523 None:intergenic
TTATCCGTTGGGAGAATCTT+TGG 0.281279 4.1:-4919512 None:intergenic
TGGCCATTGATCAACTTCTT+TGG 0.285992 4.1:-4921524 None:intergenic
CAAATTACCTGTCATATAGA+TGG 0.304147 4.1:-4921319 None:intergenic
TCTTGTTGTTGGTGAATCTA+TGG 0.342990 4.1:+4919896 MS.gene06037:CDS
GATTCGTTCATCAGAAATTT+CGG 0.351984 4.1:+4920458 MS.gene06037:CDS
TACGAGTACTTATTTCAATT+AGG 0.353189 4.1:-4920497 None:intergenic
ATGCATAGATTCATACGAAA+TGG 0.355370 4.1:+4919476 MS.gene06037:CDS
GTTCAATCAGCAGGCAGAAA+AGG 0.356093 4.1:+4921223 MS.gene06037:CDS
GAACTCTTGGGCACTGCAGC+TGG 0.366126 4.1:+4919663 MS.gene06037:CDS
AAACCAAATTCCCTATGTAT+TGG 0.366578 4.1:+4919637 MS.gene06037:CDS
TTTGTTGCTTATACATATGC+TGG 0.369186 4.1:+4920094 MS.gene06037:CDS
AACCAAATTCCCTATGTATT+GGG 0.374000 4.1:+4919638 MS.gene06037:CDS
TGTTCTACAGTTCTTGTTGT+TGG 0.381983 4.1:+4919885 MS.gene06037:CDS
CTTGCATTTGTTCCGAATGA+AGG 0.387344 4.1:+4919828 MS.gene06037:CDS
CGAGGCATTCTTGAAGCTAC+TGG 0.388413 4.1:+4920326 MS.gene06037:CDS
GAACGTGAAATGGGAAGCTT+TGG 0.397755 4.1:+4919414 None:intergenic
ATTAAAGGAATATTGCCAAA+TGG 0.406702 4.1:+4920064 MS.gene06037:CDS
ATGTACCGCTGTTATCGATT+TGG 0.409554 4.1:+4921430 MS.gene06037:CDS
GCAACAAAGAATAGCCCATT+TGG 0.413622 4.1:-4920079 None:intergenic
TATGTATTGGGATGAACTCT+TGG 0.415911 4.1:+4919650 MS.gene06037:CDS
CGAATATCTATTCATGAGGT+TGG 0.432463 4.1:+4920552 MS.gene06037:CDS
GAAATTGTAGCTGGTGGGAT+TGG 0.433535 4.1:+4920287 MS.gene06037:CDS
GATGCAAATGTTGTCCTTGT+TGG 0.435349 4.1:+4919939 MS.gene06037:CDS
TTAAAGGAATATTGCCAAAT+GGG 0.435577 4.1:+4920065 MS.gene06037:CDS
TGCATTTAATAGCAATGGAT+TGG 0.437443 4.1:+4920138 MS.gene06037:CDS
TTGGGCACTGCAGCTGGAAG+TGG 0.442276 4.1:+4919669 MS.gene06037:CDS
GCATTTGCATTTAATAGCAA+TGG 0.449501 4.1:+4920133 MS.gene06037:CDS
TCGTCACCTACATATTAATC+AGG 0.453944 4.1:+4920605 MS.gene06037:CDS
TTGTTGCTTATACATATGCT+GGG 0.459480 4.1:+4920095 MS.gene06037:CDS
GACTGAGGTGTTTGAGCAAA+GGG 0.462664 4.1:-4919579 None:intergenic
AAATTGTAGCTGGTGGGATT+GGG 0.464490 4.1:+4920288 MS.gene06037:CDS
TACATGTTTGCATGGAAGAA+AGG 0.465025 4.1:-4920582 None:intergenic
TGCATAGATTCATACGAAAT+GGG 0.467431 4.1:+4919477 MS.gene06037:CDS
TTCAATCAGCAGGCAGAAAA+GGG 0.469264 4.1:+4921224 MS.gene06037:CDS
AAACTTGAGATGTTTGAAGT+TGG 0.476023 4.1:+4919450 MS.gene06037:CDS
ATCTTCATTGTGTGCTGCAA+TGG 0.479739 4.1:-4919919 None:intergenic
TTAAATGCAAATGCAGAGCT+TGG 0.481636 4.1:-4920124 None:intergenic
AACTGTAGAACACTCATTTG+AGG 0.494365 4.1:-4919874 None:intergenic
ATTATAAGTGATCACGATGA+TGG 0.514146 4.1:-4921544 None:intergenic
TTTACTTATTAATTTCAAGA+AGG 0.519559 4.1:+4919800 MS.gene06037:CDS
GATCAACTTCTTTGGGGAGA+GGG 0.520508 4.1:-4921516 None:intergenic
AAGAGTTCATCCCAATACAT+AGG 0.525942 4.1:-4919648 None:intergenic
CTTAACCAAAACAACAAAAG+AGG 0.527509 4.1:+4921254 MS.gene06037:CDS
TGATCAACTTCTTTGGGGAG+AGG 0.529110 4.1:-4921517 None:intergenic
AAATTACCTGTCATATAGAT+GGG 0.529936 4.1:-4921318 None:intergenic
ATGTATTGGGATGAACTCTT+GGG 0.531229 4.1:+4919651 MS.gene06037:CDS
AACTTACCTGATTAATATGT+AGG 0.532136 4.1:-4920611 None:intergenic
GCTACAATTTCATCTTCAGC+TGG 0.536105 4.1:-4920275 None:intergenic
AAGATGAGAGTTCAATCAGC+AGG 0.536107 4.1:+4921214 MS.gene06037:CDS
TCCCCAAAGAAGTTGATCAA+TGG 0.547959 4.1:+4921521 MS.gene06037:CDS
TGACTGAGGTGTTTGAGCAA+AGG 0.552574 4.1:-4919580 None:intergenic
CGTTCATCAGAAATTTCGGT+GGG 0.552815 4.1:+4920462 MS.gene06037:CDS
AGAGTTCATCCCAATACATA+GGG 0.557026 4.1:-4919647 None:intergenic
GTACATAGCGAGTGAAGCAA+TGG 0.559431 4.1:-4921413 None:intergenic
GCCATTGATCAACTTCTTTG+GGG 0.566266 4.1:-4921522 None:intergenic
TGAAATGGGAAGCTTTGGAA+TGG 0.574755 4.1:+4919419 None:intergenic
AAAACACTATCAATAATTGA+AGG 0.575576 4.1:+4921458 MS.gene06037:CDS
AAGATATTTACATCAAGAAG+AGG 0.587862 4.1:-4919696 None:intergenic
GCTGAAGATGAAATTGTAGC+TGG 0.605512 4.1:+4920278 MS.gene06037:CDS
TTGAGAAGTGATTCTGACTG+AGG 0.618267 4.1:-4919594 None:intergenic
ATTTCGTATGAATCTATGCA+TGG 0.620039 4.1:-4919474 None:intergenic
ACAATTTCATCTTCAGCTGG+TGG 0.624043 4.1:-4920272 None:intergenic
TGTTGCTTATACATATGCTG+GGG 0.624573 4.1:+4920096 MS.gene06037:CDS
GGGCGCAACTTCATTTCGCG+AGG 0.627990 4.1:+4920308 MS.gene06037:CDS
TCGTTCATCAGAAATTTCGG+TGG 0.628286 4.1:+4920461 MS.gene06037:CDS
TAGGCCAAAGATTCTCCCAA+CGG 0.638678 4.1:+4919508 MS.gene06037:CDS
GAAGCGAATATCTATTCATG+AGG 0.645121 4.1:+4920548 MS.gene06037:CDS
GGTGACGATACATGTTTGCA+TGG 0.654853 4.1:-4920590 None:intergenic
TTCTTCCAAATCGATAACAG+CGG 0.659701 4.1:-4921435 None:intergenic
TAATTGAAATAAGTACTCGT+AGG 0.665353 4.1:+4920499 MS.gene06037:CDS
AAGATGAAATTGTAGCTGGT+GGG 0.668109 4.1:+4920282 MS.gene06037:CDS
ACGCTTACGTGTGACCAACA+AGG 0.668777 4.1:-4919953 None:intergenic
GTTCATCAGAAATTTCGGTG+GGG 0.678470 4.1:+4920463 MS.gene06037:CDS
GAAGATGAAATTGTAGCTGG+TGG 0.686068 4.1:+4920281 MS.gene06037:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAATTTAAAAATGCAA+AGG - chr4.1:4920385-4920404 None:intergenic 10.0%
!! AAAAGAAAAATTCAATAGAA+GGG - chr4.1:4921358-4921377 None:intergenic 15.0%
!! TTAATTCAATATATGAACAA+GGG - chr4.1:4920679-4920698 None:intergenic 15.0%
!! TTTACTTATTAATTTCAAGA+AGG + chr4.1:4919800-4919819 MS.gene06037:CDS 15.0%
!!! AAGAGATCATTTTAAATAAT+AGG - chr4.1:4920173-4920192 None:intergenic 15.0%
!!! AGAGATCATTTTAAATAATA+GGG - chr4.1:4920172-4920191 None:intergenic 15.0%
!!! GTTTTGAAATTTGAATAAAA+TGG + chr4.1:4919991-4920010 MS.gene06037:intron 15.0%
!!! TTAAGTTCAGTTTTAATATT+GGG + chr4.1:4920805-4920824 MS.gene06037:intron 15.0%
!! AAAACACTATCAATAATTGA+AGG + chr4.1:4921458-4921477 MS.gene06037:CDS 20.0%
!! AAAGAAAAATTCAATAGAAG+GGG - chr4.1:4921357-4921376 None:intergenic 20.0%
!! CAAAAGAAAAATTCAATAGA+AGG - chr4.1:4921359-4921378 None:intergenic 20.0%
!! GTTAATTCAATATATGAACA+AGG - chr4.1:4920680-4920699 None:intergenic 20.0%
!! TGAAAGAAAAGAAAAAAAAG+CGG + chr4.1:4921101-4921120 MS.gene06037:intron 20.0%
!! TTCTTAATACTTACATTACA+TGG - chr4.1:4920207-4920226 None:intergenic 20.0%
!!! AAATTTGCTTTATGATGATT+AGG + chr4.1:4920229-4920248 MS.gene06037:intron 20.0%
!!! ATAAGTATTCTTTCCTTTTT+TGG + chr4.1:4920018-4920037 MS.gene06037:intron 20.0%
!!! ATTGAAACATCTTCTTTTTT+CGG - chr4.1:4921488-4921507 None:intergenic 20.0%
!!! GTTAAGTTCAGTTTTAATAT+TGG + chr4.1:4920804-4920823 MS.gene06037:intron 20.0%
!!! TAAGTTCAGTTTTAATATTG+GGG + chr4.1:4920806-4920825 MS.gene06037:intron 20.0%
! AAATTACCTGTCATATAGAT+GGG - chr4.1:4921321-4921340 None:intergenic 25.0%
! AACTTACCTGATTAATATGT+AGG - chr4.1:4920614-4920633 None:intergenic 25.0%
! AAGATATTTACATCAAGAAG+AGG - chr4.1:4919699-4919718 None:intergenic 25.0%
! ATCTCAATCCACTTTATATT+TGG + chr4.1:4920751-4920770 MS.gene06037:intron 25.0%
! ATCTGAAAATCATAGATTGA+CGG + chr4.1:4921034-4921053 MS.gene06037:intron 25.0%
! ATTAAAGGAATATTGCCAAA+TGG + chr4.1:4920064-4920083 MS.gene06037:CDS 25.0%
! CATAACATAAAGACCAAAAA+AGG - chr4.1:4920034-4920053 None:intergenic 25.0%
! TAATTGAAATAAGTACTCGT+AGG + chr4.1:4920499-4920518 MS.gene06037:CDS 25.0%
! TACGAGTACTTATTTCAATT+AGG - chr4.1:4920500-4920519 None:intergenic 25.0%
! TATATACAATGCAACAACAT+TGG - chr4.1:4919738-4919757 None:intergenic 25.0%
! TCTCAATCCACTTTATATTT+GGG + chr4.1:4920752-4920771 MS.gene06037:intron 25.0%
! TTAAAGGAATATTGCCAAAT+GGG + chr4.1:4920065-4920084 MS.gene06037:CDS 25.0%
! TTATGCAGCTACTTAATTAA+AGG + chr4.1:4920049-4920068 MS.gene06037:intron 25.0%
!! AAACTTTTCAATCCTTCATT+CGG - chr4.1:4919843-4919862 None:intergenic 25.0%
!! ACTTTCAGTGTAAATGTTTT+AGG + chr4.1:4920915-4920934 MS.gene06037:intron 25.0%
!!! AAAATCCTCTTTTGTTGTTT+TGG - chr4.1:4921262-4921281 None:intergenic 25.0%
!!! TCATATAGATGGGATTTTTT+TGG - chr4.1:4921311-4921330 None:intergenic 25.0%
AAAAATCCCATCTATATGAC+AGG + chr4.1:4921312-4921331 MS.gene06037:CDS 30.0%
AAACCAAATTCCCTATGTAT+TGG + chr4.1:4919637-4919656 MS.gene06037:CDS 30.0%
AAATCATAGATTGACGGTAT+AGG + chr4.1:4921040-4921059 MS.gene06037:intron 30.0%
AACCAAATTCCCTATGTATT+GGG + chr4.1:4919638-4919657 MS.gene06037:CDS 30.0%
AATCATAGATTGACGGTATA+GGG + chr4.1:4921041-4921060 MS.gene06037:intron 30.0%
ATGCATAGATTCATACGAAA+TGG + chr4.1:4919476-4919495 MS.gene06037:CDS 30.0%
ATTCATATGAATGACCTTAG+AGG + chr4.1:4920980-4920999 MS.gene06037:intron 30.0%
ATTTCGTATGAATCTATGCA+TGG - chr4.1:4919477-4919496 None:intergenic 30.0%
CAAATTACCTGTCATATAGA+TGG - chr4.1:4921322-4921341 None:intergenic 30.0%
CATCTATATGACAGGTAATT+TGG + chr4.1:4921320-4921339 MS.gene06037:intron 30.0%
CTCAATCCACTTTATATTTG+GGG + chr4.1:4920753-4920772 MS.gene06037:intron 30.0%
CTTAACCAAAACAACAAAAG+AGG + chr4.1:4921254-4921273 MS.gene06037:CDS 30.0%
GATTCGTTCATCAGAAATTT+CGG + chr4.1:4920458-4920477 MS.gene06037:CDS 30.0%
GCATTTGCATTTAATAGCAA+TGG + chr4.1:4920133-4920152 MS.gene06037:CDS 30.0%
GTCAACGGAATTTAAATTGA+AGG + chr4.1:4921188-4921207 MS.gene06037:intron 30.0%
GTTTCTATCACTAAAGTCAA+CGG + chr4.1:4921173-4921192 MS.gene06037:intron 30.0%
TATTTCCATGACTCAGAAAA+TGG - chr4.1:4920732-4920751 None:intergenic 30.0%
TCAATCCACTTTATATTTGG+GGG + chr4.1:4920754-4920773 MS.gene06037:intron 30.0%
TCTTCTTCTTCCTTATTCTT+AGG + chr4.1:4921389-4921408 MS.gene06037:intron 30.0%
TGCATAGATTCATACGAAAT+GGG + chr4.1:4919477-4919496 MS.gene06037:CDS 30.0%
TGCATTTAATAGCAATGGAT+TGG + chr4.1:4920138-4920157 MS.gene06037:CDS 30.0%
TTTAATCATAACCACCTCTA+AGG - chr4.1:4920997-4921016 None:intergenic 30.0%
! AAACTTGAGATGTTTGAAGT+TGG + chr4.1:4919450-4919469 MS.gene06037:CDS 30.0%
! TACGAAATGGGTTTCTTAAT+AGG + chr4.1:4919489-4919508 MS.gene06037:CDS 30.0%
! TCTAAGGTCATTCATATGAA+TGG - chr4.1:4920981-4921000 None:intergenic 30.0%
! TTGTTGCTTATACATATGCT+GGG + chr4.1:4920095-4920114 MS.gene06037:CDS 30.0%
! TTTGTTGCTTATACATATGC+TGG + chr4.1:4920094-4920113 MS.gene06037:CDS 30.0%
!!! CACTCTATTTTTTATCCGTT+GGG - chr4.1:4919526-4919545 None:intergenic 30.0%
AACTGTAGAACACTCATTTG+AGG - chr4.1:4919877-4919896 None:intergenic 35.0%
AAGAGTTCATCCCAATACAT+AGG - chr4.1:4919651-4919670 None:intergenic 35.0%
AAGATGAAATTGTAGCTGGT+GGG + chr4.1:4920282-4920301 MS.gene06037:CDS 35.0%
AAGCAATGGACCTAAGAATA+AGG - chr4.1:4921402-4921421 None:intergenic 35.0%
AGAGTTCATCCCAATACATA+GGG - chr4.1:4919650-4919669 None:intergenic 35.0%
ATCCCAATACATAGGGAATT+TGG - chr4.1:4919643-4919662 None:intergenic 35.0%
ATGTATTGGGATGAACTCTT+GGG + chr4.1:4919651-4919670 MS.gene06037:CDS 35.0%
CCAACGGATAAAAAATAGAG+TGG + chr4.1:4919524-4919543 MS.gene06037:CDS 35.0%
CGAATATCTATTCATGAGGT+TGG + chr4.1:4920552-4920571 MS.gene06037:CDS 35.0%
GAAGCGAATATCTATTCATG+AGG + chr4.1:4920548-4920567 MS.gene06037:CDS 35.0%
TACATGTTTGCATGGAAGAA+AGG - chr4.1:4920585-4920604 None:intergenic 35.0%
TATGTATTGGGATGAACTCT+TGG + chr4.1:4919650-4919669 MS.gene06037:CDS 35.0%
TCGTCACCTACATATTAATC+AGG + chr4.1:4920605-4920624 MS.gene06037:CDS 35.0%
TTAAATGCAAATGCAGAGCT+TGG - chr4.1:4920127-4920146 None:intergenic 35.0%
TTCTTCCAAATCGATAACAG+CGG - chr4.1:4921438-4921457 None:intergenic 35.0%
! GAGGATTTTCTGTCAATTCT+AGG + chr4.1:4921273-4921292 MS.gene06037:CDS 35.0%
! TGTTCTACAGTTCTTGTTGT+TGG + chr4.1:4919885-4919904 MS.gene06037:CDS 35.0%
! TGTTGCTTATACATATGCTG+GGG + chr4.1:4920096-4920115 MS.gene06037:CDS 35.0%
!! TCTTGTTGTTGGTGAATCTA+TGG + chr4.1:4919896-4919915 MS.gene06037:CDS 35.0%
!! TTCAGTTTTAATATTGGGGC+TGG + chr4.1:4920810-4920829 MS.gene06037:intron 35.0%
!!! CCACTCTATTTTTTATCCGT+TGG - chr4.1:4919527-4919546 None:intergenic 35.0%
!!! TCGAAGCTGATTTTGAAGTA+TGG - chr4.1:4919559-4919578 None:intergenic 35.0%
!!! TTCTGCTCTTGTTTTAACAG+AGG + chr4.1:4920436-4920455 MS.gene06037:intron 35.0%
AAATTGTAGCTGGTGGGATT+GGG + chr4.1:4920288-4920307 MS.gene06037:CDS 40.0%
AAGATGAGAGTTCAATCAGC+AGG + chr4.1:4921214-4921233 MS.gene06037:CDS 40.0%
ACAATTTCATCTTCAGCTGG+TGG - chr4.1:4920275-4920294 None:intergenic 40.0%
ATCTTCATTGTGTGCTGCAA+TGG - chr4.1:4919922-4919941 None:intergenic 40.0%
ATGCACCCCCAAATATAAAG+TGG - chr4.1:4920762-4920781 None:intergenic 40.0%
CATATGAATGACCTTAGAGG+TGG + chr4.1:4920983-4921002 MS.gene06037:intron 40.0%
CGTTCATCAGAAATTTCGGT+GGG + chr4.1:4920462-4920481 MS.gene06037:CDS 40.0%
CTTGCATTTGTTCCGAATGA+AGG + chr4.1:4919828-4919847 MS.gene06037:CDS 40.0%
GAAGATGAAATTGTAGCTGG+TGG + chr4.1:4920281-4920300 MS.gene06037:CDS 40.0%
GATGCAAATGTTGTCCTTGT+TGG + chr4.1:4919939-4919958 MS.gene06037:CDS 40.0%
GCAACAAAGAATAGCCCATT+TGG - chr4.1:4920082-4920101 None:intergenic 40.0%
GCCATTGATCAACTTCTTTG+GGG - chr4.1:4921525-4921544 None:intergenic 40.0%
GCTACAATTTCATCTTCAGC+TGG - chr4.1:4920278-4920297 None:intergenic 40.0%
GCTGAAGATGAAATTGTAGC+TGG + chr4.1:4920278-4920297 MS.gene06037:CDS 40.0%
GGCCATTGATCAACTTCTTT+GGG - chr4.1:4921526-4921545 None:intergenic 40.0%
GTTCATCAGAAATTTCGGTG+GGG + chr4.1:4920463-4920482 MS.gene06037:CDS 40.0%
TCGTTCATCAGAAATTTCGG+TGG + chr4.1:4920461-4920480 MS.gene06037:CDS 40.0%
TGGCCATTGATCAACTTCTT+TGG - chr4.1:4921527-4921546 None:intergenic 40.0%
TTATCCGTTGGGAGAATCTT+TGG - chr4.1:4919515-4919534 None:intergenic 40.0%
TTCAATCAGCAGGCAGAAAA+GGG + chr4.1:4921224-4921243 MS.gene06037:CDS 40.0%
TTGAGAAGTGATTCTGACTG+AGG - chr4.1:4919597-4919616 None:intergenic 40.0%
! ATGTACCGCTGTTATCGATT+TGG + chr4.1:4921430-4921449 MS.gene06037:CDS 40.0%
! TCCCCAAAGAAGTTGATCAA+TGG + chr4.1:4921521-4921540 MS.gene06037:CDS 40.0%
CCATGACTCAGAAAATGGCT+AGG - chr4.1:4920727-4920746 None:intergenic 45.0%
GAAATTGTAGCTGGTGGGAT+TGG + chr4.1:4920287-4920306 MS.gene06037:CDS 45.0%
GGTGACGATACATGTTTGCA+TGG - chr4.1:4920593-4920612 None:intergenic 45.0%
GTACATAGCGAGTGAAGCAA+TGG - chr4.1:4921416-4921435 None:intergenic 45.0%
GTTCAATCAGCAGGCAGAAA+AGG + chr4.1:4921223-4921242 MS.gene06037:CDS 45.0%
TAGGCCAAAGATTCTCCCAA+CGG + chr4.1:4919508-4919527 MS.gene06037:CDS 45.0%
! GACTGAGGTGTTTGAGCAAA+GGG - chr4.1:4919582-4919601 None:intergenic 45.0%
! GATCAACTTCTTTGGGGAGA+GGG - chr4.1:4921519-4921538 None:intergenic 45.0%
! TGACTGAGGTGTTTGAGCAA+AGG - chr4.1:4919583-4919602 None:intergenic 45.0%
! TGATCAACTTCTTTGGGGAG+AGG - chr4.1:4921520-4921539 None:intergenic 45.0%
!! CCTAGCCATTTTCTGAGTCA+TGG + chr4.1:4920724-4920743 MS.gene06037:intron 45.0%
ACGCTTACGTGTGACCAACA+AGG - chr4.1:4919956-4919975 None:intergenic 50.0%
! AACAAGGGTGCATGTGTGTG+TGG - chr4.1:4920664-4920683 None:intergenic 50.0%
! ACAAGGGTGCATGTGTGTGT+GGG - chr4.1:4920663-4920682 None:intergenic 50.0%
! CGAGGCATTCTTGAAGCTAC+TGG + chr4.1:4920326-4920345 MS.gene06037:CDS 50.0%
! TAATATTGGGGCTGGTGCAC+TGG + chr4.1:4920818-4920837 MS.gene06037:intron 50.0%
GGGCGCAACTTCATTTCGCG+AGG + chr4.1:4920308-4920327 MS.gene06037:CDS 60.0%
! GAACTCTTGGGCACTGCAGC+TGG + chr4.1:4919663-4919682 MS.gene06037:CDS 60.0%
! TTGGGCACTGCAGCTGGAAG+TGG + chr4.1:4919669-4919688 MS.gene06037:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 4919423 4921565 4919423 ID=MS.gene06037
chr4.1 mRNA 4919423 4921565 4919423 ID=MS.gene06037.t1;Parent=MS.gene06037
chr4.1 exon 4919423 4919707 4919423 ID=MS.gene06037.t1.exon1;Parent=MS.gene06037.t1
chr4.1 CDS 4919423 4919707 4919423 ID=cds.MS.gene06037.t1;Parent=MS.gene06037.t1
chr4.1 exon 4919798 4919967 4919798 ID=MS.gene06037.t1.exon2;Parent=MS.gene06037.t1
chr4.1 CDS 4919798 4919967 4919798 ID=cds.MS.gene06037.t1;Parent=MS.gene06037.t1
chr4.1 exon 4920057 4920159 4920057 ID=MS.gene06037.t1.exon3;Parent=MS.gene06037.t1
chr4.1 CDS 4920057 4920159 4920057 ID=cds.MS.gene06037.t1;Parent=MS.gene06037.t1
chr4.1 exon 4920251 4920367 4920251 ID=MS.gene06037.t1.exon4;Parent=MS.gene06037.t1
chr4.1 CDS 4920251 4920367 4920251 ID=cds.MS.gene06037.t1;Parent=MS.gene06037.t1
chr4.1 exon 4920456 4920626 4920456 ID=MS.gene06037.t1.exon5;Parent=MS.gene06037.t1
chr4.1 CDS 4920456 4920626 4920456 ID=cds.MS.gene06037.t1;Parent=MS.gene06037.t1
chr4.1 exon 4921210 4921333 4921210 ID=MS.gene06037.t1.exon6;Parent=MS.gene06037.t1
chr4.1 CDS 4921210 4921333 4921210 ID=cds.MS.gene06037.t1;Parent=MS.gene06037.t1
chr4.1 exon 4921411 4921565 4921411 ID=MS.gene06037.t1.exon7;Parent=MS.gene06037.t1
chr4.1 CDS 4921411 4921565 4921411 ID=cds.MS.gene06037.t1;Parent=MS.gene06037.t1
Gene Sequence

>MS.gene06037

ATGGGAAGCTTTGGAATGGAACGTGAAAAACTTGAGATGTTTGAAGTTGGACCATGCATAGATTCATACGAAATGGGTTTCTTAATAGGCCAAAGATTCTCCCAACGGATAAAAAATAGAGTGGCTTCAGACACCATACTTCAAAATCAGCTTCGACCCTTTGCTCAAACACCTCAGTCAGAATCACTTCTCAAAGCACTTTTTGATAATAATCAAACCAAATTCCCTATGTATTGGGATGAACTCTTGGGCACTGCAGCTGGAAGTGGTGTGCCTCTTCTTGATGTAAATATCTTCTACTAGAAACATACACCAATGTTGTTGCATTGTATATATAATTAATTAATAATAGTAACATTTTTTGTTTGTGAGCAGATTTTACTTATTAATTTCAAGAAGGAGATTCTTGCATTTGTTCCGAATGAAGGATTGAAAAGTTTAGAAGATGATTCCTCAAATGAGTGTTCTACAGTTCTTGTTGTTGGTGAATCTATGGCCATTGCAGCACACAATGAAGATGCAAATGTTGTCCTTGTTGGTCACACGTAAGCGTTTATAGTCATTTTTTGTTTTGAAATTTGAATAAAATGGCTTTATAAGTATTCTTTCCTTTTTTGGTCTTTATGTTATGCAGCTACTTAATTAAAGGAATATTGCCAAATGGGCTATTCTTTGTTGCTTATACATATGCTGGGGAGCTTCCAAGCTCTGCATTTGCATTTAATAGCAATGGATTGGTAAAAATTCCCTATTATTTAAAATGATCTCTTAATATAAAAAACCATGTAATGTAAGTATTAAGAACAAAATTTGCTTTATGATGATTAGGCATTCACTCTAAATTCAGTACCACCAGCTGAAGATGAAATTGTAGCTGGTGGGATTGGGCGCAACTTCATTTCGCGAGGCATTCTTGAAGCTACTGGCATTGACGATGCTATAAATGTTTGATTTTAGAGCCTTTGCATTTTTAAATTTTAATGAACTCTTATGAATTTAATGTTTATAATATGTTCTGCTCTTGTTTTAACAGAGGATTCGTTCATCAGAAATTTCGGTGGGGCATTCTTATAACCTAATTGAAATAAGTACTCGTAGGATTGTTAATGTTGAAACAGCGTCTAAGAAGCGAATATCTATTCATGAGGTTGGAGAAGAACCTTTCTTCCATGCAAACATGTATCGTCACCTACATATTAATCAGGTAAGTTTTTCAGAAAATACAGTCTTGTTTTATCCCACACACACATGCACCCTTGTTCATATATTGAATTAACATTGCATAGAATTACTGACAGAAACCTAGCCATTTTCTGAGTCATGGAAATATCTCAATCCACTTTATATTTGGGGGTGCATTTAAGTCACAGATACAAGTCTTGTTAAGTTCAGTTTTAATATTGGGGCTGGTGCACTGGTTTAATAGCAGAGAGAGAGAGCATGATTAAATTGTATTACTCATATAAATAAGATTTGATTTTAATTATCATGCACTTTCAGTGTAAATGTTTTAGGTTATACACTGTCAGCATTTTAAATTGTCAGCAAATTGCAACCATTCATATGAATGACCTTAGAGGTGGTTATGATTAAAGTCGAACGTTTCGTATGATCTGAAAATCATAGATTGACGGTATAGGGAATTTGTTCATTAACTATTTTAATTTAATAAATGTATTGAAAGAAAAGAAAAAAAAGCGGAAAACAAATTATAAACATATCATAAGTTGTATTCAAAAGTTATTTACAAGTTTCTATCACTAAAGTCAACGGAATTTAAATTGAAGGCACAAGATGAGAGTTCAATCAGCAGGCAGAAAAGGGCAAATGTCTTAACCAAAACAACAAAAGAGGATTTTCTGTCAATTCTAGGAGACGCAGATGACCAAAAAAATCCCATCTATATGACAGGTAATTTGGATACATACAAACCCCTTCTATTGAATTTTTCTTTTGATTATCACATTCTTCTTCTTCCTTATTCTTAGGTCCATTGCTTCACTCGCTATGTACCGCTGTTATCGATTTGGAAGAAAAAACACTATCAATAATTGAAGGTAATCCGAAAAAAGAAGATGTTTCAATTGTTTTCTCCCTCTCCCCAAAGAAGTTGATCAATGGCCATCATCGTGATCACTTATAA

Protein sequence

>MS.gene06037.t1

MGSFGMEREKLEMFEVGPCIDSYEMGFLIGQRFSQRIKNRVASDTILQNQLRPFAQTPQSESLLKALFDNNQTKFPMYWDELLGTAAGSGVPLLDILLINFKKEILAFVPNEGLKSLEDDSSNECSTVLVVGESMAIAAHNEDANVVLVGHTYLIKGILPNGLFFVAYTYAGELPSSAFAFNSNGLAFTLNSVPPAEDEIVAGGIGRNFISRGILEATGIDDAINRIRSSEISVGHSYNLIEISTRRIVNVETASKKRISIHEVGEEPFFHANMYRHLHINQAQDESSISRQKRANVLTKTTKEDFLSILGDADDQKNPIYMTGPLLHSLCTAVIDLEEKTLSIIEGNPKKEDVSIVFSLSPKKLINGHHRDHL