Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86991.t1 | XP_013465590.1 | 87.9 | 223 | 27 | 0 | 1 | 223 | 1 | 223 | 7.90E-95 | 356.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86991.t1 | Q9LMP7 | 73.5 | 219 | 57 | 1 | 5 | 223 | 6 | 223 | 9.9e-78 | 291.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86991.t1 | A0A072VDE7 | 87.9 | 223 | 27 | 0 | 1 | 223 | 1 | 223 | 5.7e-95 | 356.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05029 | MS.gene86991 | 0.81688 | 4.40E-52 | -1.69E-46 |
| MS.gene057130 | MS.gene86991 | 0.829815 | 4.17E-55 | -1.69E-46 |
| MS.gene057662 | MS.gene86991 | 0.844953 | 5.49E-59 | -1.69E-46 |
| MS.gene059590 | MS.gene86991 | 0.800554 | 1.36E-48 | -1.69E-46 |
| MS.gene059802 | MS.gene86991 | 0.80127 | 9.74E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene86991 | MS.gene48916 | PPI |
| MS.gene86991 | MS.gene45857 | PPI |
| MS.gene86991 | MS.gene48256 | PPI |
| MS.gene86991 | MS.gene059227 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86991.t1 | MTR_2g104910 | 98.655 | 223 | 3 | 0 | 1 | 223 | 1 | 223 | 3.07e-162 | 447 |
| MS.gene86991.t1 | MTR_2g104910 | 99.052 | 211 | 2 | 0 | 13 | 223 | 2 | 212 | 1.23e-153 | 425 |
| MS.gene86991.t1 | MTR_4g006570 | 85.333 | 225 | 31 | 1 | 1 | 223 | 1 | 225 | 5.64e-139 | 388 |
| MS.gene86991.t1 | MTR_4g006570 | 85.849 | 212 | 30 | 0 | 12 | 223 | 44 | 255 | 1.78e-132 | 373 |
| MS.gene86991.t1 | MTR_4g006570 | 85.849 | 212 | 30 | 0 | 12 | 223 | 30 | 241 | 2.81e-132 | 372 |
| MS.gene86991.t1 | MTR_4g006570 | 85.849 | 212 | 30 | 0 | 12 | 223 | 39 | 250 | 3.35e-132 | 372 |
| MS.gene86991.t1 | MTR_4g006570 | 85.000 | 200 | 30 | 0 | 24 | 223 | 1 | 200 | 5.51e-124 | 349 |
| MS.gene86991.t1 | MTR_4g025850 | 36.481 | 233 | 127 | 6 | 6 | 223 | 14 | 240 | 8.79e-42 | 142 |
| MS.gene86991.t1 | MTR_4g025850 | 32.941 | 170 | 93 | 6 | 6 | 160 | 14 | 177 | 1.00e-16 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86991.t1 | AT1G15880 | 79.452 | 219 | 44 | 1 | 5 | 223 | 6 | 223 | 8.95e-125 | 352 |
| MS.gene86991.t1 | AT2G45200 | 36.481 | 233 | 127 | 5 | 6 | 223 | 13 | 239 | 4.76e-41 | 140 |
| MS.gene86991.t1 | AT2G45200 | 33.865 | 251 | 127 | 5 | 6 | 223 | 13 | 257 | 3.13e-38 | 133 |
Find 44 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGGATGCACGCTCTTTA+AGG | 0.233741 | 2.3:-169788 | None:intergenic |
| GTCTTCCAGCGTTCGACTTT+TGG | 0.265092 | 2.3:+170170 | MS.gene86991:CDS |
| ACCATTATACTTGCCCTTGT+TGG | 0.314904 | 2.3:+170555 | MS.gene86991:CDS |
| TGATCGAACAAGATTAGATT+TGG | 0.341869 | 2.3:+169734 | MS.gene86991:CDS |
| TGAGATCTTGATAAATTTCT+TGG | 0.346054 | 2.3:-168742 | None:intergenic |
| CCATTATACTTGCCCTTGTT+GGG | 0.360182 | 2.3:+170556 | MS.gene86991:CDS |
| CAATAAACATCATCTTTACT+TGG | 0.366621 | 2.3:-170616 | None:intergenic |
| GTCCTCTGGTGGGTCTGAAA+TGG | 0.402834 | 2.3:+168697 | MS.gene86991:CDS |
| CCCAACAAGGGCAAGTATAA+TGG | 0.403543 | 2.3:-170556 | None:intergenic |
| TTGGGATTCCCTTCGCAAAC+AGG | 0.411483 | 2.3:+166439 | MS.gene86991:CDS |
| CAGGCTTGGGTGTCCTCTGG+TGG | 0.415447 | 2.3:+168686 | MS.gene86991:CDS |
| ATCCATGGAGGTTCAAAGTT+GGG | 0.434741 | 2.3:+166421 | None:intergenic |
| ATGCAGGCTTGGGTGTCCTC+TGG | 0.438772 | 2.3:+168683 | MS.gene86991:CDS |
| AGCTCAGTTGGATGAGCAAA+TGG | 0.441426 | 2.3:+168544 | MS.gene86991:CDS |
| AACAAGATTAGATTTGGAAG+AGG | 0.457292 | 2.3:+169740 | MS.gene86991:CDS |
| TCAACGAAAGCTTCTACAAA+AGG | 0.463049 | 2.3:+168587 | MS.gene86991:CDS |
| CAGAGAGTGATCTGGAGTCT+TGG | 0.464648 | 2.3:+168618 | MS.gene86991:CDS |
| TGAGGCAACAGAGAGTGATC+TGG | 0.471531 | 2.3:+168610 | MS.gene86991:CDS |
| TAAACTCACAGATGCAGGCT+TGG | 0.471681 | 2.3:+168672 | MS.gene86991:CDS |
| AAACTCACAGATGCAGGCTT+GGG | 0.480195 | 2.3:+168673 | MS.gene86991:CDS |
| CTGTCCTGTACTGCGGCTGA+TGG | 0.485234 | 2.3:-169805 | None:intergenic |
| CATCCATGGAGGTTCAAAGT+TGG | 0.506812 | 2.3:+166420 | None:intergenic |
| ACAAGTAAACTCACAGATGC+AGG | 0.514539 | 2.3:+168667 | MS.gene86991:CDS |
| AGGCTTGGGTGTCCTCTGGT+GGG | 0.515681 | 2.3:+168687 | MS.gene86991:CDS |
| GCATCCATCAGCCGCAGTAC+AGG | 0.527799 | 2.3:+169801 | MS.gene86991:CDS |
| AAGAAAACTTGAAGCTCAGT+TGG | 0.529386 | 2.3:+168532 | MS.gene86991:CDS |
| AGATTAGATTTGGAAGAGGG+TGG | 0.530846 | 2.3:+169744 | MS.gene86991:CDS |
| CATCAGCCGCAGTACAGGAC+AGG | 0.540958 | 2.3:+169806 | MS.gene86991:CDS |
| ATCCCAACTTTGAACCTCCA+TGG | 0.546573 | 2.3:-166423 | None:intergenic |
| GCTTAGCTCTAAGATTAGAC+CGG | 0.556599 | 2.3:-169674 | None:intergenic |
| AATTGAAACCTGTTTGCGAA+GGG | 0.560013 | 2.3:-166447 | None:intergenic |
| ACAAGATTAGATTTGGAAGA+GGG | 0.565048 | 2.3:+169741 | MS.gene86991:CDS |
| AAATTGAAACCTGTTTGCGA+AGG | 0.567814 | 2.3:-166448 | None:intergenic |
| TCCCACCAAAAGTCGAACGC+TGG | 0.611928 | 2.3:-170175 | None:intergenic |
| AAATGCATACGGACCCAACA+AGG | 0.613983 | 2.3:-170569 | None:intergenic |
| CGTGAGCAGTCGCCTCCCAA+CGG | 0.616247 | 2.3:+170217 | MS.gene86991:CDS |
| TGGATGCACGCTCTTTAAGG+AGG | 0.630188 | 2.3:-169785 | None:intergenic |
| TCACAAGCACAAGCAACACT+CGG | 0.631705 | 2.3:+170140 | MS.gene86991:CDS |
| GAAAGCTTCTACAAAAGGTG+AGG | 0.666826 | 2.3:+168592 | MS.gene86991:CDS |
| AATGCATACGGACCCAACAA+GGG | 0.667761 | 2.3:-170568 | None:intergenic |
| ACAGCAATCATACCGTTGGG+AGG | 0.674625 | 2.3:-170229 | None:intergenic |
| AACCATTTCAGACCCACCAG+AGG | 0.691979 | 2.3:-168699 | None:intergenic |
| TAACAACCTGTCCTGTACTG+CGG | 0.715310 | 2.3:-169812 | None:intergenic |
| AATTTATCAAGATCTCACCC+AGG | 0.754080 | 2.3:+168748 | MS.gene86991:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTAATGATAAATGAAA+AGG | - | chr2.3:168944-168963 | None:intergenic | 10.0% |
| !! | GTTATAATAAATAATGTTAT+AGG | - | chr2.3:169440-169459 | None:intergenic | 10.0% |
| !! | GTTTAAATAAATATTGAATA+AGG | + | chr2.3:170256-170275 | MS.gene86991:intron | 10.0% |
| !! | TATAATAAATAATGTTATAG+GGG | - | chr2.3:169438-169457 | None:intergenic | 10.0% |
| !!! | AAGCTTATATATAATTTTAT+AGG | - | chr2.3:169936-169955 | None:intergenic | 10.0% |
| !!! | CAAAAATATTTGAAATATAA+AGG | - | chr2.3:169587-169606 | None:intergenic | 10.0% |
| !!! | TCATTTTTTCAAATAATTAT+TGG | - | chr2.3:166792-166811 | None:intergenic | 10.0% |
| !! | AAAATTCAAAACTATGATAT+GGG | + | chr2.3:166518-166537 | MS.gene86991:intron | 15.0% |
| !! | GTAACAGTTATAATAAATAA+TGG | - | chr2.3:169484-169503 | None:intergenic | 15.0% |
| !! | TAAAATTCAAAACTATGATA+TGG | + | chr2.3:166517-166536 | MS.gene86991:intron | 15.0% |
| !!! | TATGTTCTTTTTGTTATTTT+GGG | + | chr2.3:167649-167668 | MS.gene86991:intron | 15.0% |
| !!! | TTTATCACTTTTTAATCTAA+TGG | + | chr2.3:167022-167041 | MS.gene86991:intron | 15.0% |
| !!! | TTTTTTTTTTCTTTCTTGAA+GGG | + | chr2.3:168406-168425 | MS.gene86991:intron | 15.0% |
| !!! | TTTTTTTTTTTCTTTCTTGA+AGG | + | chr2.3:168405-168424 | MS.gene86991:intron | 15.0% |
| !! | ACATTGGAATTGAAATAAAA+GGG | - | chr2.3:169376-169395 | None:intergenic | 20.0% |
| !! | AGGTCAAGTATAAATTTATT+AGG | - | chr2.3:168981-169000 | None:intergenic | 20.0% |
| !! | GAAAATAAGAAAAATGCATA+CGG | - | chr2.3:170583-170602 | None:intergenic | 20.0% |
| !! | TGATATATGATAGAACATTA+TGG | - | chr2.3:167312-167331 | None:intergenic | 20.0% |
| !! | TTTAAATACATCTAACAAGT+TGG | - | chr2.3:169634-169653 | None:intergenic | 20.0% |
| !!! | AAAAACTTGCTTTTGAAAAA+GGG | - | chr2.3:167843-167862 | None:intergenic | 20.0% |
| !!! | AATGGTTTTATATCGTAAAT+TGG | + | chr2.3:168562-168581 | MS.gene86991:CDS | 20.0% |
| !!! | ATCAAGTAATTTTGTTGAAT+TGG | + | chr2.3:168381-168400 | MS.gene86991:intron | 20.0% |
| !!! | CTATGTTCTTTTTGTTATTT+TGG | + | chr2.3:167648-167667 | MS.gene86991:intron | 20.0% |
| !!! | TAAGCAAAAAACTACTTTTA+AGG | - | chr2.3:168006-168025 | None:intergenic | 20.0% |
| !!! | TCAAGTAATTTTGTTGAATT+GGG | + | chr2.3:168382-168401 | MS.gene86991:intron | 20.0% |
| !!! | TCTTTTTATCTGTATTATGA+CGG | - | chr2.3:168194-168213 | None:intergenic | 20.0% |
| !!! | TGCAATTTGTGTTTTAAAAA+AGG | - | chr2.3:169108-169127 | None:intergenic | 20.0% |
| !!! | TTAATGTTTTATTTGGTTGT+CGG | + | chr2.3:166582-166601 | MS.gene86991:intron | 20.0% |
| !!! | TTTTTCTTATTTTCATCTAC+TGG | + | chr2.3:170589-170608 | MS.gene86991:CDS | 20.0% |
| ! | AAAAGACGACTTAAAGTTTA+TGG | + | chr2.3:168208-168227 | MS.gene86991:intron | 25.0% |
| ! | AAACAGTTTGAATTCTATAG+TGG | - | chr2.3:167005-167024 | None:intergenic | 25.0% |
| ! | AAACTTCAAATGAACATTCA+AGG | - | chr2.3:170033-170052 | None:intergenic | 25.0% |
| ! | AACCTATAAACCATATCAAA+AGG | - | chr2.3:166637-166656 | None:intergenic | 25.0% |
| ! | ACCTATAAACCATATCAAAA+GGG | - | chr2.3:166636-166655 | None:intergenic | 25.0% |
| ! | AGATCAAATAATCAAGATGA+CGG | + | chr2.3:168074-168093 | MS.gene86991:intron | 25.0% |
| ! | CAAATGTCTGATATTAAAGA+TGG | - | chr2.3:169988-170007 | None:intergenic | 25.0% |
| ! | CATAATACTATATACACCAA+AGG | - | chr2.3:167533-167552 | None:intergenic | 25.0% |
| ! | CATATACTAATAGGAAACAA+AGG | - | chr2.3:167510-167529 | None:intergenic | 25.0% |
| ! | CATATTATATCATGTAGTTG+TGG | + | chr2.3:168819-168838 | MS.gene86991:intron | 25.0% |
| ! | GAAAAAATAATCCATTAGCT+TGG | - | chr2.3:170011-170030 | None:intergenic | 25.0% |
| ! | GACATTGGAATTGAAATAAA+AGG | - | chr2.3:169377-169396 | None:intergenic | 25.0% |
| ! | TAAAACTTGTGTAGTAGAAA+TGG | - | chr2.3:170444-170463 | None:intergenic | 25.0% |
| ! | TGAGATCTTGATAAATTTCT+TGG | - | chr2.3:168745-168764 | None:intergenic | 25.0% |
| ! | TTTCAATTCCAATGTCTTAT+AGG | + | chr2.3:169381-169400 | MS.gene86991:intron | 25.0% |
| !! | AGGTTTAGTTTAAATAAGAG+TGG | - | chr2.3:169250-169269 | None:intergenic | 25.0% |
| !! | GGTTTAGTTTAAATAAGAGT+GGG | - | chr2.3:169249-169268 | None:intergenic | 25.0% |
| !! | GTTAGATGTATTTAAAATGC+AGG | + | chr2.3:169638-169657 | MS.gene86991:intron | 25.0% |
| !! | GTTTAGTTTAAATAAGAGTG+GGG | - | chr2.3:169248-169267 | None:intergenic | 25.0% |
| !! | TTTAGTTTAAATAAGAGTGG+GGG | - | chr2.3:169247-169266 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATAATAGTGAC+CGG | + | chr2.3:168016-168035 | MS.gene86991:intron | 25.0% |
| !! | TTTTTGCTTATAATAGTGAC+CGG | - | chr2.3:168035-168016 | None:intergenic | 25.0% |
| !! | TTTTTGTAGAATCTCTATCA+CGG | + | chr2.3:167858-167877 | MS.gene86991:intron | 25.0% |
| !!! | ACACAAGTTTTATTTCTCTA+TGG | + | chr2.3:170452-170471 | MS.gene86991:intron | 25.0% |
| !!! | ATGACATGATTTTGACATTT+TGG | + | chr2.3:166712-166731 | MS.gene86991:intron | 25.0% |
| !!! | ATTATTTTAAATACTCCCTC+CGG | - | chr2.3:168038-168057 | None:intergenic | 25.0% |
| !!! | CAAAAACTTGCTTTTGAAAA+AGG | - | chr2.3:167844-167863 | None:intergenic | 25.0% |
| !!! | GCATAGTTCAAGTTAATTTT+AGG | + | chr2.3:168431-168450 | MS.gene86991:intron | 25.0% |
| !!! | TAAGCAAAAAACTACTTTTG+AGG | + | chr2.3:167917-167936 | MS.gene86991:intron | 25.0% |
| !!! | TATAGTTTTGAGTGATGAAT+TGG | + | chr2.3:166688-166707 | MS.gene86991:intron | 25.0% |
| !!! | TGACATGATTTTGACATTTT+GGG | + | chr2.3:166713-166732 | MS.gene86991:intron | 25.0% |
| !!! | TTAAAATGCAGGAGTTTTAT+CGG | + | chr2.3:169649-169668 | MS.gene86991:intron | 25.0% |
| AACAAGATTAGATTTGGAAG+AGG | + | chr2.3:169740-169759 | MS.gene86991:CDS | 30.0% | |
| AATAAAGCGAAAAAAGTCGA+TGG | + | chr2.3:170530-170549 | MS.gene86991:CDS | 30.0% | |
| AATGACATCCTATAAGACAT+TGG | - | chr2.3:169392-169411 | None:intergenic | 30.0% | |
| AATTGCCAGTTAGAACAATT+AGG | - | chr2.3:169294-169313 | None:intergenic | 30.0% | |
| ACAAGATTAGATTTGGAAGA+GGG | + | chr2.3:169741-169760 | MS.gene86991:CDS | 30.0% | |
| ACAGAAAAACCAAGTTATAC+AGG | - | chr2.3:168314-168333 | None:intergenic | 30.0% | |
| ACCTGGATAAAAGATTGATT+CGG | + | chr2.3:167429-167448 | MS.gene86991:intron | 30.0% | |
| ATAAAGAACCCTTTACATCA+GGG | - | chr2.3:168886-168905 | None:intergenic | 30.0% | |
| ATATGAAAGTCTAACATGAG+AGG | + | chr2.3:167174-167193 | MS.gene86991:intron | 30.0% | |
| ATATGCTCACACATAATGAT+TGG | - | chr2.3:168804-168823 | None:intergenic | 30.0% | |
| CATTGAATGAATGATGTATG+TGG | + | chr2.3:167942-167961 | MS.gene86991:intron | 30.0% | |
| CTATGGTGTTTGTTTAATGA+CGG | + | chr2.3:170469-170488 | MS.gene86991:intron | 30.0% | |
| TACTATCACTATACAAAACC+AGG | - | chr2.3:166670-166689 | None:intergenic | 30.0% | |
| TAGCAAAAACCTGTATAACT+TGG | + | chr2.3:168302-168321 | MS.gene86991:intron | 30.0% | |
| TAGGATCAATGATCTATGAA+GGG | + | chr2.3:166742-166761 | MS.gene86991:intron | 30.0% | |
| TATGCTCACACATAATGATT+GGG | - | chr2.3:168803-168822 | None:intergenic | 30.0% | |
| TCAACTTCAGAATCAAAACA+GGG | - | chr2.3:169143-169162 | None:intergenic | 30.0% | |
| TCAATTTCTGCATATGCATT+CGG | + | chr2.3:167401-167420 | MS.gene86991:intron | 30.0% | |
| TCTGATATTAAAGATGGCAT+TGG | - | chr2.3:169982-170001 | None:intergenic | 30.0% | |
| TGATCGAACAAGATTAGATT+TGG | + | chr2.3:169734-169753 | MS.gene86991:CDS | 30.0% | |
| TGCTTAGAAAACAAGTTTGT+AGG | + | chr2.3:166945-166964 | MS.gene86991:intron | 30.0% | |
| TGTTAGACTTTCATATGACA+AGG | - | chr2.3:167170-167189 | None:intergenic | 30.0% | |
| TTCCTATTAGTATATGCCTT+TGG | + | chr2.3:167514-167533 | MS.gene86991:intron | 30.0% | |
| TTGGAATTGAAATAAAAGGG+TGG | - | chr2.3:169373-169392 | None:intergenic | 30.0% | |
| ! | ACCCTTTTGATATGGTTTAT+AGG | + | chr2.3:166632-166651 | MS.gene86991:intron | 30.0% |
| ! | ACTTTTTAATCTTCTCCATC+AGG | + | chr2.3:169506-169525 | MS.gene86991:intron | 30.0% |
| ! | ATATTCTGATGTTTTACGTG+TGG | + | chr2.3:167087-167106 | MS.gene86991:intron | 30.0% |
| ! | TTGTCTTTTTAACCTTTTGC+AGG | + | chr2.3:168508-168527 | MS.gene86991:intron | 30.0% |
| ! | TTTTATCAAGATTGTTCCAC+TGG | + | chr2.3:169869-169888 | MS.gene86991:intron | 30.0% |
| !! | TTGACTAGTTTCTGATGATA+GGG | + | chr2.3:166881-166900 | MS.gene86991:intron | 30.0% |
| !! | TTTGACTAGTTTCTGATGAT+AGG | + | chr2.3:166880-166899 | MS.gene86991:intron | 30.0% |
| !!! | GAGAATTCTTTTGAAACTGA+AGG | - | chr2.3:169001-169020 | None:intergenic | 30.0% |
| !!! | TATAGGTTTTGAGAATTTCC+TGG | + | chr2.3:166649-166668 | MS.gene86991:intron | 30.0% |
| AAATTGAAACCTGTTTGCGA+AGG | - | chr2.3:166451-166470 | None:intergenic | 35.0% | |
| AACATGAGAGGATTCATTCT+CGG | + | chr2.3:167186-167205 | MS.gene86991:intron | 35.0% | |
| AAGAAAACTTGAAGCTCAGT+TGG | + | chr2.3:168532-168551 | MS.gene86991:CDS | 35.0% | |
| AATCATCTTGATCAGACTTC+TGG | + | chr2.3:168129-168148 | MS.gene86991:intron | 35.0% | |
| AATTGAAACCTGTTTGCGAA+GGG | - | chr2.3:166450-166469 | None:intergenic | 35.0% | |
| AATTTATCAAGATCTCACCC+AGG | + | chr2.3:168748-168767 | MS.gene86991:CDS | 35.0% | |
| AGTCACCTAATTGTTCTAAC+TGG | + | chr2.3:169286-169305 | MS.gene86991:intron | 35.0% | |
| ATGCTCACACATAATGATTG+GGG | - | chr2.3:168802-168821 | None:intergenic | 35.0% | |
| ATTGATGTACAAATCACTCG+AGG | - | chr2.3:167386-167405 | None:intergenic | 35.0% | |
| CAGAAACTAGTCAAACTACA+AGG | - | chr2.3:166875-166894 | None:intergenic | 35.0% | |
| CATAAAGAACCCTTTACATC+AGG | - | chr2.3:168887-168906 | None:intergenic | 35.0% | |
| CATATACAGCAACATAAGTG+GGG | + | chr2.3:167263-167282 | MS.gene86991:intron | 35.0% | |
| CATTGAATGAGTGATGTATG+TGG | - | chr2.3:167981-168000 | None:intergenic | 35.0% | |
| CTAGGATCAATGATCTATGA+AGG | + | chr2.3:166741-166760 | MS.gene86991:intron | 35.0% | |
| GCATATACAGCAACATAAGT+GGG | + | chr2.3:167262-167281 | MS.gene86991:intron | 35.0% | |
| GGGCTATAAATTCTGATCTT+TGG | + | chr2.3:166902-166921 | MS.gene86991:intron | 35.0% | |
| GTCAACTTCAGAATCAAAAC+AGG | - | chr2.3:169144-169163 | None:intergenic | 35.0% | |
| GTTCTTTATGATAGCTGAGA+AGG | + | chr2.3:168897-168916 | MS.gene86991:intron | 35.0% | |
| GTTTATTCTTGTACTGCAGA+TGG | + | chr2.3:170106-170125 | MS.gene86991:intron | 35.0% | |
| TATGGGTTTGTGTAATTCAG+AGG | + | chr2.3:166535-166554 | MS.gene86991:intron | 35.0% | |
| TCAACGAAAGCTTCTACAAA+AGG | + | chr2.3:168587-168606 | MS.gene86991:CDS | 35.0% | |
| TCATAACTCATACAGTCATC+AGG | - | chr2.3:167753-167772 | None:intergenic | 35.0% | |
| TGCATATACAGCAACATAAG+TGG | + | chr2.3:167261-167280 | MS.gene86991:intron | 35.0% | |
| TGTTTCTTGCATCTTACAAC+CGG | - | chr2.3:167223-167242 | None:intergenic | 35.0% | |
| ! | CACCAAAGGCATATACTAAT+AGG | - | chr2.3:167519-167538 | None:intergenic | 35.0% |
| ! | GAGTTTCTACCCTTTTGATA+TGG | + | chr2.3:166624-166643 | MS.gene86991:intron | 35.0% |
| ! | TATTAAAGATGGCATTGGAG+CGG | - | chr2.3:169977-169996 | None:intergenic | 35.0% |
| ! | TCCGAATCAATCTTTTATCC+AGG | - | chr2.3:167433-167452 | None:intergenic | 35.0% |
| ! | TCTTGTTAAACCTTTTCCCA+CGG | + | chr2.3:167617-167636 | MS.gene86991:intron | 35.0% |
| !! | ATCTGTATTATGACGGACTA+CGG | - | chr2.3:168187-168206 | None:intergenic | 35.0% |
| !! | TGACTAGTTTCTGATGATAG+GGG | + | chr2.3:166882-166901 | MS.gene86991:intron | 35.0% |
| !! | TTTTATTTGGTTGTCGGTGA+TGG | + | chr2.3:166588-166607 | MS.gene86991:intron | 35.0% |
| !!! | TTGACATTTTGGGTTCATCT+AGG | + | chr2.3:166723-166742 | MS.gene86991:intron | 35.0% |
| !!! | TTGTCGGTGATGGTTTTTTT+CGG | + | chr2.3:166598-166617 | MS.gene86991:intron | 35.0% |
| AAATAAGAGTGGGGGTAGAA+GGG | - | chr2.3:169239-169258 | None:intergenic | 40.0% | |
| AACTGTACTCCCTGATGTAA+AGG | + | chr2.3:168874-168893 | MS.gene86991:intron | 40.0% | |
| ACAAGTAAACTCACAGATGC+AGG | + | chr2.3:168667-168686 | MS.gene86991:CDS | 40.0% | |
| ACATCACAAAGCAACAGAGT+AGG | - | chr2.3:169532-169551 | None:intergenic | 40.0% | |
| ACCATTATACTTGCCCTTGT+TGG | + | chr2.3:170555-170574 | MS.gene86991:CDS | 40.0% | |
| ACTAAACCTTCTAACCTCTC+TGG | + | chr2.3:169261-169280 | MS.gene86991:intron | 40.0% | |
| ACTGTACTCCCTGATGTAAA+GGG | + | chr2.3:168875-168894 | MS.gene86991:intron | 40.0% | |
| ACTTCAGAATCAAAACAGGG+TGG | - | chr2.3:169140-169159 | None:intergenic | 40.0% | |
| AGATTAGATTTGGAAGAGGG+TGG | + | chr2.3:169744-169763 | MS.gene86991:CDS | 40.0% | |
| AGCTCATACGATGTAATACC+TGG | - | chr2.3:168769-168788 | None:intergenic | 40.0% | |
| CCATTATACTTGCCCTTGTT+GGG | + | chr2.3:170556-170575 | MS.gene86991:CDS | 40.0% | |
| GAAAGCTTCTACAAAAGGTG+AGG | + | chr2.3:168592-168611 | MS.gene86991:CDS | 40.0% | |
| GACTTTCATATGACAAGGTG+AGG | - | chr2.3:167165-167184 | None:intergenic | 40.0% | |
| GCTCATACGATGTAATACCT+GGG | - | chr2.3:168768-168787 | None:intergenic | 40.0% | |
| TAAATAAGAGTGGGGGTAGA+AGG | - | chr2.3:169240-169259 | None:intergenic | 40.0% | |
| TCAACAGCAATCATACCGTT+GGG | - | chr2.3:170235-170254 | None:intergenic | 40.0% | |
| TCAGACATTTGCCAAGCTAA+TGG | + | chr2.3:169997-170016 | MS.gene86991:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | + | chr2.3:168020-168039 | MS.gene86991:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | - | chr2.3:168039-168020 | None:intergenic | 40.0% | |
| TGTCTGACAGATCTAAGCTT+AGG | - | chr2.3:169611-169630 | None:intergenic | 40.0% | |
| TTCAACAGCAATCATACCGT+TGG | - | chr2.3:170236-170255 | None:intergenic | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | + | chr2.3:168019-168038 | MS.gene86991:intron | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | - | chr2.3:168038-168019 | None:intergenic | 40.0% | |
| TTTCATATGACAAGGTGAGG+TGG | - | chr2.3:167162-167181 | None:intergenic | 40.0% | |
| TTTCTGATCATAGGTGTGTC+AGG | - | chr2.3:166825-166844 | None:intergenic | 40.0% | |
| ! | AATCAAGATGACGGCAGTAT+TGG | + | chr2.3:168083-168102 | MS.gene86991:intron | 40.0% |
| ! | ACGGCTTTTAACAATGTTGC+AGG | + | chr2.3:170488-170507 | MS.gene86991:intron | 40.0% |
| ! | AGGGAGTACAGTTTGCAAAT+AGG | - | chr2.3:168867-168886 | None:intergenic | 40.0% |
| ! | ATGAGAGAGGAGTATAACAG+AGG | + | chr2.3:169031-169050 | MS.gene86991:intron | 40.0% |
| ! | ATGTTTTACGTGTGGTGGTA+TGG | + | chr2.3:167095-167114 | MS.gene86991:intron | 40.0% |
| ! | CAAGTTTTCTTGCCTGCAAA+AGG | - | chr2.3:168523-168542 | None:intergenic | 40.0% |
| ! | CTCTTTTCTACAGATGAGAG+AGG | + | chr2.3:169018-169037 | MS.gene86991:intron | 40.0% |
| ! | GCACTGACATTTCTGATCAT+AGG | - | chr2.3:166834-166853 | None:intergenic | 40.0% |
| ! | TGAGAGAGGAGTATAACAGA+GGG | + | chr2.3:169032-169051 | MS.gene86991:intron | 40.0% |
| ! | TTCTGATGTTTTACGTGTGG+TGG | + | chr2.3:167090-167109 | MS.gene86991:intron | 40.0% |
| !! | AGTTCTGAAAAACAGAGACG+TGG | - | chr2.3:169196-169215 | None:intergenic | 40.0% |
| !! | CTCTGTTGCTTTGTGATGTT+AGG | + | chr2.3:169533-169552 | MS.gene86991:intron | 40.0% |
| !! | GCTTAGCTCTAAGATTAGAC+CGG | - | chr2.3:169677-169696 | None:intergenic | 40.0% |
| !! | GGAGTCTTTCTGAAGCTAAA+AGG | - | chr2.3:169087-169106 | None:intergenic | 40.0% |
| !!! | TGTCGGTGATGGTTTTTTTC+GGG | + | chr2.3:166599-166618 | MS.gene86991:intron | 40.0% |
| AAACTCACAGATGCAGGCTT+GGG | + | chr2.3:168673-168692 | MS.gene86991:CDS | 45.0% | |
| AAATGCATACGGACCCAACA+AGG | - | chr2.3:170572-170591 | None:intergenic | 45.0% | |
| AATGCATACGGACCCAACAA+GGG | - | chr2.3:170571-170590 | None:intergenic | 45.0% | |
| AGAATCTCTATCACGGCTTC+TGG | + | chr2.3:167865-167884 | MS.gene86991:intron | 45.0% | |
| AGCTCAGTTGGATGAGCAAA+TGG | + | chr2.3:168544-168563 | MS.gene86991:CDS | 45.0% | |
| ATATGCATTCGGCGATAACC+TGG | + | chr2.3:167412-167431 | MS.gene86991:intron | 45.0% | |
| ATGAGAGGATTCATTCTCGG+TGG | + | chr2.3:167189-167208 | MS.gene86991:intron | 45.0% | |
| CCCAACAAGGGCAAGTATAA+TGG | - | chr2.3:170559-170578 | None:intergenic | 45.0% | |
| GAATTCTATAGTGGCTGCAC+AGG | - | chr2.3:166996-167015 | None:intergenic | 45.0% | |
| TAAACTCACAGATGCAGGCT+TGG | + | chr2.3:168672-168691 | MS.gene86991:CDS | 45.0% | |
| TAACAACCTGTCCTGTACTG+CGG | - | chr2.3:169815-169834 | None:intergenic | 45.0% | |
| TAATAAGTGACGCACTCCAG+TGG | - | chr2.3:169888-169907 | None:intergenic | 45.0% | |
| TCAAAACAGGGTGGACGAAT+AGG | - | chr2.3:169131-169150 | None:intergenic | 45.0% | |
| TCACAAGCACAAGCAACACT+CGG | + | chr2.3:170140-170159 | MS.gene86991:CDS | 45.0% | |
| TGAGAGGATTCATTCTCGGT+GGG | + | chr2.3:167190-167209 | MS.gene86991:intron | 45.0% | |
| TGGCTAATACTTACTCCCTC+CGG | + | chr2.3:167885-167904 | MS.gene86991:intron | 45.0% | |
| ! | AAACCTTTTCCCACGGCATA+GGG | + | chr2.3:167624-167643 | MS.gene86991:intron | 45.0% |
| ! | AATTAGGTGACTAGCCAGAG+AGG | - | chr2.3:169278-169297 | None:intergenic | 45.0% |
| ! | GAGAGAGGAGTATAACAGAG+GGG | + | chr2.3:169033-169052 | MS.gene86991:intron | 45.0% |
| ! | TAAACCTTTTCCCACGGCAT+AGG | + | chr2.3:167623-167642 | MS.gene86991:intron | 45.0% |
| ! | TGATGGATGCACGCTCTTTA+AGG | - | chr2.3:169791-169810 | None:intergenic | 45.0% |
| !! | TTATAATAAATAATGTTATA+GGG | - | chr2.3:169439-169458 | None:intergenic | 5.0% |
| !! | TTATTATTTACTTATATATT+TGG | + | chr2.3:169902-169921 | MS.gene86991:intron | 5.0% |
| !!! | AATATATTTTTTTGTTTTTT+AGG | + | chr2.3:168464-168483 | MS.gene86991:intron | 5.0% |
| !!! | TATTTTTTTAATGTTTTATT+TGG | + | chr2.3:166575-166594 | MS.gene86991:intron | 5.0% |
| AAACAGAACAACCCCAGCTG+TGG | - | chr2.3:170075-170094 | None:intergenic | 50.0% | |
| AACCATTTCAGACCCACCAG+AGG | - | chr2.3:168702-168721 | None:intergenic | 50.0% | |
| AAGCAACAGAGTAGGCCTGA+TGG | - | chr2.3:169524-169543 | None:intergenic | 50.0% | |
| ACAGATGTCTGATCCACAGC+TGG | + | chr2.3:170059-170078 | MS.gene86991:intron | 50.0% | |
| ACAGCAATCATACCGTTGGG+AGG | - | chr2.3:170232-170251 | None:intergenic | 50.0% | |
| AGAACATAGACCCTATGCCG+TGG | - | chr2.3:167637-167656 | None:intergenic | 50.0% | |
| AGACGTGGATCAACTGCAAC+GGG | - | chr2.3:169181-169200 | None:intergenic | 50.0% | |
| AGATGTCTGATCCACAGCTG+GGG | + | chr2.3:170061-170080 | MS.gene86991:intron | 50.0% | |
| ATTCTCGGTGGGTGACTTAC+CGG | + | chr2.3:167201-167220 | MS.gene86991:intron | 50.0% | |
| CAGATGTCTGATCCACAGCT+GGG | + | chr2.3:170060-170079 | MS.gene86991:intron | 50.0% | |
| CATAAGTGGGGTTGACTGCA+TGG | + | chr2.3:167275-167294 | MS.gene86991:intron | 50.0% | |
| GAACATAGACCCTATGCCGT+GGG | - | chr2.3:167636-167655 | None:intergenic | 50.0% | |
| GAGACGTGGATCAACTGCAA+CGG | - | chr2.3:169182-169201 | None:intergenic | 50.0% | |
| GTACAAATCACTCGAGGCAG+AGG | - | chr2.3:167380-167399 | None:intergenic | 50.0% | |
| GTGTGGTGGTATGGTACAGA+CGG | + | chr2.3:167104-167123 | MS.gene86991:intron | 50.0% | |
| TGAGGCAACAGAGAGTGATC+TGG | + | chr2.3:168610-168629 | MS.gene86991:CDS | 50.0% | |
| TTGGGATTCCCTTCGCAAAC+AGG | + | chr2.3:166439-166458 | MS.gene86991:CDS | 50.0% | |
| ! | CAGAGAGTGATCTGGAGTCT+TGG | + | chr2.3:168618-168637 | MS.gene86991:CDS | 50.0% |
| ! | GACTAGCCAGAGAGGTTAGA+AGG | - | chr2.3:169270-169289 | None:intergenic | 50.0% |
| ! | GTCTTCCAGCGTTCGACTTT+TGG | + | chr2.3:170170-170189 | MS.gene86991:CDS | 50.0% |
| ! | TCCAGCGTTCGACTTTTGGT+GGG | + | chr2.3:170174-170193 | MS.gene86991:CDS | 50.0% |
| ! | TGGATGCACGCTCTTTAAGG+AGG | - | chr2.3:169788-169807 | None:intergenic | 50.0% |
| ! | TTCCAGCGTTCGACTTTTGG+TGG | + | chr2.3:170173-170192 | MS.gene86991:CDS | 50.0% |
| !!! | TGCAGGAGTTTTATCGGCTC+CGG | + | chr2.3:169655-169674 | MS.gene86991:intron | 50.0% |
| ACTCGAGGCAGAGGAAGACA+TGG | - | chr2.3:167371-167390 | None:intergenic | 55.0% | |
| AGACCCTATGCCGTGGGAAA+AGG | - | chr2.3:167630-167649 | None:intergenic | 55.0% | |
| CAACTGCAACGGGAGATCGA+CGG | - | chr2.3:169171-169190 | None:intergenic | 55.0% | |
| TCCCACCAAAAGTCGAACGC+TGG | - | chr2.3:170178-170197 | None:intergenic | 55.0% | |
| TGGCTCAGCAGTGACTGCTT+TGG | + | chr2.3:167042-167061 | MS.gene86991:intron | 55.0% | |
| ! | GTCCTCTGGTGGGTCTGAAA+TGG | + | chr2.3:168697-168716 | MS.gene86991:CDS | 55.0% |
| AGGCTTGGGTGTCCTCTGGT+GGG | + | chr2.3:168687-168706 | MS.gene86991:CDS | 60.0% | |
| ATGCAGGCTTGGGTGTCCTC+TGG | + | chr2.3:168683-168702 | MS.gene86991:CDS | 60.0% | |
| CATCAGCCGCAGTACAGGAC+AGG | + | chr2.3:169806-169825 | MS.gene86991:CDS | 60.0% | |
| CTGTCCTGTACTGCGGCTGA+TGG | - | chr2.3:169808-169827 | None:intergenic | 60.0% | |
| GCATCCATCAGCCGCAGTAC+AGG | + | chr2.3:169801-169820 | MS.gene86991:CDS | 60.0% | |
| CAGGCTTGGGTGTCCTCTGG+TGG | + | chr2.3:168686-168705 | MS.gene86991:CDS | 65.0% | |
| CGTGAGCAGTCGCCTCCCAA+CGG | + | chr2.3:170217-170236 | MS.gene86991:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 166425 | 170623 | 166425 | ID=MS.gene86991 |
| chr2.3 | mRNA | 166425 | 170623 | 166425 | ID=MS.gene86991.t1;Parent=MS.gene86991 |
| chr2.3 | exon | 166425 | 166460 | 166425 | ID=MS.gene86991.t1.exon1;Parent=MS.gene86991.t1 |
| chr2.3 | CDS | 166425 | 166460 | 166425 | ID=cds.MS.gene86991.t1;Parent=MS.gene86991.t1 |
| chr2.3 | exon | 168530 | 168769 | 168530 | ID=MS.gene86991.t1.exon2;Parent=MS.gene86991.t1 |
| chr2.3 | CDS | 168530 | 168769 | 168530 | ID=cds.MS.gene86991.t1;Parent=MS.gene86991.t1 |
| chr2.3 | exon | 169660 | 169827 | 169660 | ID=MS.gene86991.t1.exon3;Parent=MS.gene86991.t1 |
| chr2.3 | CDS | 169660 | 169827 | 169660 | ID=cds.MS.gene86991.t1;Parent=MS.gene86991.t1 |
| chr2.3 | exon | 170125 | 170238 | 170125 | ID=MS.gene86991.t1.exon4;Parent=MS.gene86991.t1 |
| chr2.3 | CDS | 170125 | 170238 | 170125 | ID=cds.MS.gene86991.t1;Parent=MS.gene86991.t1 |
| chr2.3 | exon | 170510 | 170623 | 170510 | ID=MS.gene86991.t1.exon5;Parent=MS.gene86991.t1 |
| chr2.3 | CDS | 170510 | 170623 | 170510 | ID=cds.MS.gene86991.t1;Parent=MS.gene86991.t1 |
| Gene Sequence |
| Protein sequence |
