AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059590.t1 MTR_6g087140 98.973 487 5 0 1 487 1 487 0.0 988
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059590.t1 AT4G28910 41.414 495 183 19 1 469 1 414 9.49e-93 288
MS.gene059590.t1 AT4G28910 41.414 495 183 19 1 469 1 414 9.49e-93 288
MS.gene059590.t1 AT4G28910 41.414 495 183 19 1 469 1 414 9.49e-93 288

Find 145 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGCTTCTTTGAATTTAAA+TGG 0.163556 6.4:+61170222 MS.gene059590:CDS
CGGCTCCCACCACTTGATTC+TGG 0.178593 6.4:-61170135 None:intergenic
TTTAAATGGAAGAGGATTTC+TGG 0.193854 6.4:+61170236 MS.gene059590:CDS
CTCAGTTTGGGTTTATCTTT+TGG 0.194235 6.4:+61169988 MS.gene059590:CDS
CTGCTTCCTTTCACGTCTTC+AGG 0.217298 6.4:-61171400 None:intergenic
TTCAGATAGCAATTCGGTTT+TGG 0.226700 6.4:+61171705 MS.gene059590:CDS
CAGTTTCATCCTTCCTTTGC+AGG 0.256187 6.4:+61170900 MS.gene059590:CDS
CCTTCACCTTTCGACTGTTC+TGG 0.269268 6.4:-61171448 None:intergenic
TTCACTTGTTGAGCAGAAAA+AGG 0.274328 6.4:-61170663 None:intergenic
ATGGTTCTAAAGGATTCATT+AGG 0.299700 6.4:+61170514 MS.gene059590:CDS
GTGGATACCCAAGGCAGATT+TGG 0.307968 6.4:-61171544 None:intergenic
AACCGAATTGCTATCTGAAT+TGG 0.313360 6.4:-61171701 None:intergenic
AAACATGCAAACATGACTTA+TGG 0.318828 6.4:+61170636 MS.gene059590:CDS
TCCATTCTTACTCTTTGCTT+TGG 0.338919 6.4:-61170022 None:intergenic
TAGCGGGCTTGAGCTCAGTT+TGG 0.357348 6.4:+61169975 MS.gene059590:CDS
ACTCCAGGTATTTGAGGGCT+TGG 0.360299 6.4:-61170738 None:intergenic
TCAAATGGAAGGACAATATC+AGG 0.363492 6.4:+61171574 MS.gene059590:CDS
CAATATCAGGTGTTACTTAC+AGG 0.371934 6.4:+61171587 MS.gene059590:CDS
ATGGAAGCTCCTCGGATACT+AGG 0.374951 6.4:+61170040 MS.gene059590:CDS
ACGCACAGACGATTCTGATT+TGG 0.379964 6.4:-61171621 None:intergenic
CATATTTCTTTAACAGAAGA+TGG 0.381021 6.4:+61170414 MS.gene059590:CDS
ACGCTGTTTCCCATCACCTT+TGG 0.386142 6.4:-61171350 None:intergenic
GGAAGCTTGCCGATGATGTT+TGG 0.388261 6.4:+61170819 MS.gene059590:CDS
AGCGGGCTTGAGCTCAGTTT+GGG 0.391762 6.4:+61169976 MS.gene059590:CDS
CAAAAGAGTCAAACTCTGTT+GGG 0.393194 6.4:+61170712 MS.gene059590:CDS
CATCCTTCCTTTGCAGGGAG+AGG 0.404447 6.4:+61170906 MS.gene059590:CDS
GCCTTCATACGGCATGGCCT+CGG 0.418342 6.4:-61171311 None:intergenic
TGGATACCCAAGGCAGATTT+GGG 0.424790 6.4:-61171543 None:intergenic
GCCAAAGCAAAGAGTAAGAA+TGG 0.424949 6.4:+61170021 MS.gene059590:CDS
AATGGGCAGAAGAGATTTAC+CGG 0.429122 6.4:+61170594 MS.gene059590:CDS
CTTACTGCGGATGTGAAATT+CGG 0.437474 6.4:+61171505 MS.gene059590:CDS
TTCCTACCCAAATCTGCCTT+GGG 0.439337 6.4:+61171537 MS.gene059590:CDS
ATCCTTTAGAACCATCACTA+TGG 0.440075 6.4:-61170506 None:intergenic
CCACTTGATTCTGGCTTCTG+AGG 0.440930 6.4:-61170126 None:intergenic
TCACAATTACCTGAGTTAGC+TGG 0.441376 6.4:-61170930 None:intergenic
AGCTTGCCGAATGGTAATCT+TGG 0.447111 6.4:+61171730 MS.gene059590:CDS
TGCATCACTCCAGGTATTTG+AGG 0.452843 6.4:-61170744 None:intergenic
CATATGATGCCAACTACAAC+CGG 0.452935 6.4:+61170765 MS.gene059590:CDS
TTGTGAAGAGGAGCCTTCTT+CGG 0.455235 6.4:-61171377 None:intergenic
GTCGCTGACTCAAGCGCCAA+TGG 0.463056 6.4:+61170576 MS.gene059590:CDS
AACCAATTCAGATAGCAATT+CGG 0.466685 6.4:+61171699 MS.gene059590:CDS
TGGAAGCTCCTCGGATACTA+GGG 0.468275 6.4:+61170041 MS.gene059590:CDS
GAAATTCTCCTCGGGCTTCG+AGG 0.470253 6.4:-61170169 None:intergenic
GTATCCACCACAAGCTCAAA+TGG 0.471490 6.4:+61171559 MS.gene059590:CDS
GCACGTTCACCGGTTGTAGT+TGG 0.472212 6.4:-61170774 None:intergenic
CACAATTACCTGAGTTAGCT+GGG 0.474611 6.4:-61170929 None:intergenic
AACCATAGTGATGGTTCTAA+AGG 0.476953 6.4:+61170504 MS.gene059590:CDS
TTCTTCTGATGCTTCGAAAG+AGG 0.478218 6.4:+61170545 MS.gene059590:CDS
TGGTTCTAAAGGATTCATTA+GGG 0.480605 6.4:+61170515 MS.gene059590:CDS
TTGAGCTCCTGCACGTTCAC+CGG 0.483475 6.4:-61170784 None:intergenic
AAGGAAGCAGCACAAACCTC+AGG 0.489023 6.4:+61171413 MS.gene059590:CDS
TAATAAACCAATTGAAATTG+AGG 0.489212 6.4:+61170272 MS.gene059590:CDS
GTTCCTACCCAAATCTGCCT+TGG 0.490143 6.4:+61171536 MS.gene059590:CDS
GCAAAAGAGTCAAACTCTGT+TGG 0.492235 6.4:+61170711 MS.gene059590:CDS
GCATCACTCCAGGTATTTGA+GGG 0.494358 6.4:-61170743 None:intergenic
GGTAAATCTCTTCTGCCCAT+TGG 0.495423 6.4:-61170592 None:intergenic
TTCACATCCGCAGTAAGCCC+TGG 0.497434 6.4:-61171499 None:intergenic
AATCAAGTGGTGGGAGCCGA+AGG 0.500762 6.4:+61170139 MS.gene059590:CDS
AAACAGCGTGTCACCGAAGA+AGG 0.502399 6.4:+61171364 MS.gene059590:CDS
TGCAATATGGAGGACGATAG+CGG 0.508877 6.4:+61169958 None:intergenic
GTATGTTCAGCTTCCTATGT+TGG 0.509167 6.4:+61170848 MS.gene059590:CDS
TGTCCTTCCATTTGAGCTTG+TGG 0.512711 6.4:-61171566 None:intergenic
TATCATCATTGACCTTTGAA+AGG 0.513280 6.4:-61170200 None:intergenic
TTTAGAACCATCACTATGGT+TGG 0.516423 6.4:-61170502 None:intergenic
ATCATGGTGATTTACATGAC+AGG 0.518312 6.4:+61170379 MS.gene059590:CDS
TCTTTGAATTTAAATGGAAG+AGG 0.522869 6.4:+61170228 MS.gene059590:CDS
TCCGAGGCCATGCCGTATGA+AGG 0.523566 6.4:+61171310 MS.gene059590:CDS
GATGTGAAATTCGGAGGAAG+TGG 0.523767 6.4:+61171514 MS.gene059590:CDS
AATGGAAGAGGATTTCTGGT+TGG 0.524300 6.4:+61170240 MS.gene059590:CDS
GCACCAAGCCCTCAAATACC+TGG 0.525712 6.4:+61170735 MS.gene059590:CDS
AGGCCATGCCGTATGAAGGC+AGG 0.527342 6.4:+61171314 MS.gene059590:CDS
TCGCTGACTCAAGCGCCAAT+GGG 0.528288 6.4:+61170577 MS.gene059590:CDS
GGGCCTCTCCCTGCAAAGGA+AGG 0.535109 6.4:-61170909 None:intergenic
GTCACTAAAGAAATTCTCCT+CGG 0.539850 6.4:-61170178 None:intergenic
TGATTCTGGCTTCTGAGGAT+CGG 0.542330 6.4:-61170121 None:intergenic
CGGCCTGCCTTCATACGGCA+TGG 0.542332 6.4:-61171317 None:intergenic
GCAATATGGAGGACGATAGC+GGG 0.544052 6.4:+61169959 None:intergenic
AAACGGTAGAGGTGGAAAGA+TGG 0.544120 6.4:+61170071 MS.gene059590:CDS
CACGTCTTCAGGTTGTGAAG+AGG 0.545832 6.4:-61171389 None:intergenic
TTCTTCTCCCCTAGTATCCG+AGG 0.546199 6.4:-61170049 None:intergenic
AGTTTCATCCTTCCTTTGCA+GGG 0.548370 6.4:+61170901 MS.gene059590:CDS
TTTCTTTAGTGACCTTTCAA+AGG 0.548399 6.4:+61170188 MS.gene059590:CDS
GGAGAAGAAAACGGTAGAGG+TGG 0.549135 6.4:+61170063 MS.gene059590:CDS
GCTTCGAGGAATCAGCCCTT+CGG 0.549711 6.4:-61170155 None:intergenic
CTGGTGCATCTTTGCCCCTG+AGG 0.550568 6.4:-61171429 None:intergenic
CTAGAACGAACCAAAGGTGA+TGG 0.556734 6.4:+61171340 MS.gene059590:CDS
GATACTAGGGGAGAAGAAAA+CGG 0.558531 6.4:+61170054 MS.gene059590:CDS
CCTTCCATTTGAGCTTGTGG+TGG 0.558546 6.4:-61171563 None:intergenic
GCATGACGAACAAAATCCTC+AGG 0.559639 6.4:-61171664 None:intergenic
ACTATGGTTGGAGAGAGGCC+TGG 0.560010 6.4:-61170490 None:intergenic
TCACTAAAGAAATTCTCCTC+GGG 0.560421 6.4:-61170177 None:intergenic
GATGCTTCGAAAGAGGTTCG+TGG 0.563001 6.4:+61170552 MS.gene059590:CDS
AAGCTGAGAACTCTACCTCC+AGG 0.564043 6.4:+61170472 MS.gene059590:CDS
GGAGCTCAATCTGTGAGTAA+TGG 0.566490 6.4:+61170798 MS.gene059590:CDS
TCACAACCTGAAGACGTGAA+AGG 0.567779 6.4:+61171394 MS.gene059590:CDS
AACATAGGAAGCTGAACATA+CGG 0.571663 6.4:-61170846 None:intergenic
AGCTGGGCCTCTCCCTGCAA+AGG 0.572843 6.4:-61170913 None:intergenic
GGCATCATATGCATCACTCC+AGG 0.573713 6.4:-61170753 None:intergenic
GAGTAAGAATGGAAGCTCCT+CGG 0.574013 6.4:+61170032 MS.gene059590:CDS
ATGACATACGGAATCTAAAG+AGG 0.574178 6.4:+61170340 MS.gene059590:CDS
TCACCTTTGGTTCGTTCTAG+CGG 0.576196 6.4:-61171337 None:intergenic
AGGAAGCAGCACAAACCTCA+GGG 0.577639 6.4:+61171414 MS.gene059590:CDS
GAGCTATCCTTGTCCAACAT+AGG 0.579094 6.4:-61170861 None:intergenic
GATGAACCAAGATTACCATT+CGG 0.580457 6.4:-61171736 None:intergenic
TGTTGGACAAGGATAGCTCA+TGG 0.582770 6.4:+61170865 MS.gene059590:CDS
GAGCTTGTGGTGGATACCCA+AGG 0.584613 6.4:-61171553 None:intergenic
TCTAAAGGATTCATTAGGGT+CGG 0.586057 6.4:+61170519 MS.gene059590:CDS
AGAATCGTCTGTGCGTGTCA+TGG 0.586566 6.4:+61171628 MS.gene059590:CDS
ACTACAACCGGTGAACGTGC+AGG 0.587532 6.4:+61170777 MS.gene059590:CDS
CATGACAGCGATGTTCATCA+TGG 0.588517 6.4:+61170363 MS.gene059590:CDS
TAGAACGAACCAAAGGTGAT+GGG 0.588598 6.4:+61171341 MS.gene059590:CDS
CCAGAACAGTCGAAAGGTGA+AGG 0.589987 6.4:+61171448 MS.gene059590:CDS
AAGGAAGGATGAAACTGTTG+AGG 0.591748 6.4:-61170894 None:intergenic
GGGAGAGGCCCAGCTAACTC+AGG 0.593652 6.4:+61170921 MS.gene059590:CDS
AGGAAGGATGAAACTGTTGA+GGG 0.596334 6.4:-61170893 None:intergenic
GTTGGACAAGGATAGCTCAT+GGG 0.597490 6.4:+61170866 MS.gene059590:CDS
AAAAGAGTCAAACTCTGTTG+GGG 0.602879 6.4:+61170713 MS.gene059590:CDS
TGAGGAAAATAAACAGTCAG+AGG 0.603148 6.4:+61170290 MS.gene059590:CDS
TACGGATGTCCAAACATCAT+CGG 0.603516 6.4:-61170828 None:intergenic
AGGGGAGAAGAAAACGGTAG+AGG 0.608767 6.4:+61170060 MS.gene059590:CDS
CCTCTCTCCAACCATAGTGA+TGG 0.609945 6.4:+61170495 MS.gene059590:CDS
TCTAGCGGCCTGCCTTCATA+CGG 0.615919 6.4:-61171322 None:intergenic
CAGAAGCCAGAATCAAGTGG+TGG 0.622703 6.4:+61170129 MS.gene059590:CDS
ATCAAGTGGTGGGAGCCGAA+GGG 0.624954 6.4:+61170140 MS.gene059590:CDS
TCAGCTTCCTATGTTGGACA+AGG 0.624986 6.4:+61170854 MS.gene059590:CDS
AACTGCAGAAAATGAAGATG+TGG 0.629556 6.4:+61170440 MS.gene059590:CDS
GGCTGATTCCTCGAAGCCCG+AGG 0.632441 6.4:+61170161 MS.gene059590:CDS
AGAAGCCAGAATCAAGTGGT+GGG 0.633124 6.4:+61170130 MS.gene059590:CDS
CCACCACAAGCTCAAATGGA+AGG 0.636715 6.4:+61171563 MS.gene059590:CDS
TCATGGTGATTTACATGACA+GGG 0.638749 6.4:+61170380 MS.gene059590:CDS
TTGGACAAGGATAGCTCATG+GGG 0.649802 6.4:+61170867 MS.gene059590:CDS
CCATCACTATGGTTGGAGAG+AGG 0.650575 6.4:-61170495 None:intergenic
TGGTTCTCACATGACTCCTG+AGG 0.661496 6.4:+61171648 MS.gene059590:CDS
ACTGCGGATGTGAAATTCGG+AGG 0.662716 6.4:+61171508 MS.gene059590:CDS
CCTCAGAAGCCAGAATCAAG+TGG 0.662921 6.4:+61170126 MS.gene059590:CDS
TACCCAAGGCAGATTTGGGT+AGG 0.663102 6.4:-61171539 None:intergenic
ACATCTAAACAATATATCCG+AGG 0.671648 6.4:+61171294 MS.gene059590:CDS
GATGCACCAGAACAGTCGAA+AGG 0.674903 6.4:+61171442 MS.gene059590:CDS
GATGAGCGGACCTTACACTT+CGG 0.678313 6.4:+61170689 MS.gene059590:CDS
GGAAGCTCCTCGGATACTAG+GGG 0.687484 6.4:+61170042 MS.gene059590:CDS
CATTAAGCCAGGGCTTACTG+CGG 0.687627 6.4:+61171492 MS.gene059590:CDS
AGGCCGCTAGAACGAACCAA+AGG 0.687826 6.4:+61171334 MS.gene059590:CDS
GGAAGCAGCACAAACCTCAG+GGG 0.704276 6.4:+61171415 MS.gene059590:CDS
ATGGTTGGAGAGAGGCCTGG+AGG 0.705449 6.4:-61170487 None:intergenic
CAACAAGTGAATATGATGAG+CGG 0.706230 6.4:+61170675 MS.gene059590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTGTTAGTTAAAATGTTT+TGG + chr6.4:61171026-61171045 MS.gene059590:intron 15.0%
!! AACAATTTATGAATTTGACT+TGG - chr6.4:61171013-61171032 None:intergenic 20.0%
!! AATGCTTCTTTGAATTTAAA+TGG + chr6.4:61170222-61170241 MS.gene059590:CDS 20.0%
!! CTTAATGTTTGAAAAATCAA+TGG - chr6.4:61171479-61171498 None:intergenic 20.0%
!! TAATAAACCAATTGAAATTG+AGG + chr6.4:61170272-61170291 MS.gene059590:CDS 20.0%
!!! TGAACCAAATATTCTAAAAT+TGG + chr6.4:61171096-61171115 MS.gene059590:intron 20.0%
!!! TTATTTTCCTCAATTTCAAT+TGG - chr6.4:61170282-61170301 None:intergenic 20.0%
! AATGTTTGAAAAATCAATGG+TGG - chr6.4:61171476-61171495 None:intergenic 25.0%
! CATATTTCTTTAACAGAAGA+TGG + chr6.4:61170414-61170433 MS.gene059590:CDS 25.0%
! TCTTTGAATTTAAATGGAAG+AGG + chr6.4:61170228-61170247 MS.gene059590:CDS 25.0%
!!! ATGTTTGAAATCTTTTTCTG+TGG - chr6.4:61170622-61170641 None:intergenic 25.0%
!!! ATTTTTCAAACATTAAGCCA+GGG + chr6.4:61171482-61171501 MS.gene059590:CDS 25.0%
!!! CCAAATATTCTAAAATTGGT+TGG + chr6.4:61171100-61171119 MS.gene059590:intron 25.0%
!!! CCAACCAATTTTAGAATATT+TGG - chr6.4:61171103-61171122 None:intergenic 25.0%
!!! GATACTTACTGAGTTTTTTT+TGG + chr6.4:61171231-61171250 MS.gene059590:intron 25.0%
AAACATGCAAACATGACTTA+TGG + chr6.4:61170636-61170655 MS.gene059590:CDS 30.0%
AACCAATTCAGATAGCAATT+CGG + chr6.4:61171699-61171718 MS.gene059590:CDS 30.0%
ACATCTAAACAATATATCCG+AGG + chr6.4:61171294-61171313 MS.gene059590:CDS 30.0%
TATCATCATTGACCTTTGAA+AGG - chr6.4:61170203-61170222 None:intergenic 30.0%
TCAGGTAATTGTGATTTGAA+TGG + chr6.4:61170939-61170958 MS.gene059590:intron 30.0%
TTTAAATGGAAGAGGATTTC+TGG + chr6.4:61170236-61170255 MS.gene059590:CDS 30.0%
TTTCTTTAGTGACCTTTCAA+AGG + chr6.4:61170188-61170207 MS.gene059590:CDS 30.0%
!! ATGGTTCTAAAGGATTCATT+AGG + chr6.4:61170514-61170533 MS.gene059590:CDS 30.0%
!! GAATGTCTTTTGATGACATA+CGG + chr6.4:61170328-61170347 MS.gene059590:CDS 30.0%
!! GATTTTTCAAACATTAAGCC+AGG + chr6.4:61171481-61171500 MS.gene059590:CDS 30.0%
!! TGGTTCTAAAGGATTCATTA+GGG + chr6.4:61170515-61170534 MS.gene059590:CDS 30.0%
AAAAGAGTCAAACTCTGTTG+GGG + chr6.4:61170713-61170732 MS.gene059590:CDS 35.0%
AACATAGGAAGCTGAACATA+CGG - chr6.4:61170849-61170868 None:intergenic 35.0%
AACCGAATTGCTATCTGAAT+TGG - chr6.4:61171704-61171723 None:intergenic 35.0%
AACTGCAGAAAATGAAGATG+TGG + chr6.4:61170440-61170459 MS.gene059590:CDS 35.0%
ATATGTTCCTGACTGCATTA+TGG + chr6.4:61171056-61171075 MS.gene059590:intron 35.0%
ATCATGGTGATTTACATGAC+AGG + chr6.4:61170379-61170398 MS.gene059590:CDS 35.0%
ATGACATACGGAATCTAAAG+AGG + chr6.4:61170340-61170359 MS.gene059590:CDS 35.0%
CAAAAGAGTCAAACTCTGTT+GGG + chr6.4:61170712-61170731 MS.gene059590:CDS 35.0%
CAACAAGTGAATATGATGAG+CGG + chr6.4:61170675-61170694 MS.gene059590:CDS 35.0%
GAAGACTGGCATATTGAATT+GGG + chr6.4:61171122-61171141 MS.gene059590:intron 35.0%
GATGAACCAAGATTACCATT+CGG - chr6.4:61171739-61171758 None:intergenic 35.0%
GGTTCAGTTTACAAAACTTG+CGG - chr6.4:61171082-61171101 None:intergenic 35.0%
GTCACTAAAGAAATTCTCCT+CGG - chr6.4:61170181-61170200 None:intergenic 35.0%
TCAAATGGAAGGACAATATC+AGG + chr6.4:61171574-61171593 MS.gene059590:CDS 35.0%
TCACTAAAGAAATTCTCCTC+GGG - chr6.4:61170180-61170199 None:intergenic 35.0%
TCATGGTGATTTACATGACA+GGG + chr6.4:61170380-61170399 MS.gene059590:CDS 35.0%
TCCATTCTTACTCTTTGCTT+TGG - chr6.4:61170025-61170044 None:intergenic 35.0%
TCTAAAGGATTCATTAGGGT+CGG + chr6.4:61170519-61170538 MS.gene059590:CDS 35.0%
TGAGGAAAATAAACAGTCAG+AGG + chr6.4:61170290-61170309 MS.gene059590:CDS 35.0%
! GAAATCTTTTTCTGTGGATC+CGG - chr6.4:61170616-61170635 None:intergenic 35.0%
! TCAGATAGCAATTCGGTTTT+GGG + chr6.4:61171706-61171725 MS.gene059590:CDS 35.0%
! TCTAAAATTGGTTGGAAGAC+TGG + chr6.4:61171108-61171127 MS.gene059590:intron 35.0%
! TTCACTTGTTGAGCAGAAAA+AGG - chr6.4:61170666-61170685 None:intergenic 35.0%
! TTCAGATAGCAATTCGGTTT+TGG + chr6.4:61171705-61171724 MS.gene059590:CDS 35.0%
! TTTAGAACCATCACTATGGT+TGG - chr6.4:61170505-61170524 None:intergenic 35.0%
!! AACCATAGTGATGGTTCTAA+AGG + chr6.4:61170504-61170523 MS.gene059590:CDS 35.0%
!! AGTTTGGGTTTATCTTTTGG+TGG + chr6.4:61169991-61170010 MS.gene059590:CDS 35.0%
!! ATCCTTTAGAACCATCACTA+TGG - chr6.4:61170509-61170528 None:intergenic 35.0%
!! CAATATCAGGTGTTACTTAC+AGG + chr6.4:61171587-61171606 MS.gene059590:CDS 35.0%
!! CTCAGTTTGGGTTTATCTTT+TGG + chr6.4:61169988-61170007 MS.gene059590:CDS 35.0%
AAGGAAGGATGAAACTGTTG+AGG - chr6.4:61170897-61170916 None:intergenic 40.0%
AATGGGCAGAAGAGATTTAC+CGG + chr6.4:61170594-61170613 MS.gene059590:CDS 40.0%
ACTGGCATATTGAATTGGGT+TGG + chr6.4:61171126-61171145 MS.gene059590:intron 40.0%
AGGAAGGATGAAACTGTTGA+GGG - chr6.4:61170896-61170915 None:intergenic 40.0%
AGTTTCATCCTTCCTTTGCA+GGG + chr6.4:61170901-61170920 MS.gene059590:CDS 40.0%
CACAATTACCTGAGTTAGCT+GGG - chr6.4:61170932-61170951 None:intergenic 40.0%
CATATGATGCCAACTACAAC+CGG + chr6.4:61170765-61170784 MS.gene059590:CDS 40.0%
CTTACTGCGGATGTGAAATT+CGG + chr6.4:61171505-61171524 MS.gene059590:CDS 40.0%
GATACTAGGGGAGAAGAAAA+CGG + chr6.4:61170054-61170073 MS.gene059590:CDS 40.0%
GCAAAAGAGTCAAACTCTGT+TGG + chr6.4:61170711-61170730 MS.gene059590:CDS 40.0%
GCCAAAGCAAAGAGTAAGAA+TGG + chr6.4:61170021-61170040 MS.gene059590:CDS 40.0%
GGAAGACTGGCATATTGAAT+TGG + chr6.4:61171121-61171140 MS.gene059590:intron 40.0%
GTATGTTCAGCTTCCTATGT+TGG + chr6.4:61170848-61170867 MS.gene059590:CDS 40.0%
TACGGATGTCCAAACATCAT+CGG - chr6.4:61170831-61170850 None:intergenic 40.0%
TAGAACGAACCAAAGGTGAT+GGG + chr6.4:61171341-61171360 MS.gene059590:CDS 40.0%
TCACAATTACCTGAGTTAGC+TGG - chr6.4:61170933-61170952 None:intergenic 40.0%
TTCTTCTGATGCTTCGAAAG+AGG + chr6.4:61170545-61170564 MS.gene059590:CDS 40.0%
!! AAGTTCTGAGTCGGGAATAT+TGG - chr6.4:61170983-61171002 None:intergenic 40.0%
!! AATGGAAGAGGATTTCTGGT+TGG + chr6.4:61170240-61170259 MS.gene059590:CDS 40.0%
!! GATCTTTGAAGTTCTGAGTC+GGG - chr6.4:61170991-61171010 None:intergenic 40.0%
!! GGATCTTTGAAGTTCTGAGT+CGG - chr6.4:61170992-61171011 None:intergenic 40.0%
AAACGGTAGAGGTGGAAAGA+TGG + chr6.4:61170071-61170090 MS.gene059590:CDS 45.0%
ACGCACAGACGATTCTGATT+TGG - chr6.4:61171624-61171643 None:intergenic 45.0%
AGAAGCCAGAATCAAGTGGT+GGG + chr6.4:61170130-61170149 MS.gene059590:CDS 45.0%
AGCTTGCCGAATGGTAATCT+TGG + chr6.4:61171730-61171749 MS.gene059590:CDS 45.0%
CAGTTTCATCCTTCCTTTGC+AGG + chr6.4:61170900-61170919 MS.gene059590:CDS 45.0%
CATGACAGCGATGTTCATCA+TGG + chr6.4:61170363-61170382 MS.gene059590:CDS 45.0%
CTAGAACGAACCAAAGGTGA+TGG + chr6.4:61171340-61171359 MS.gene059590:CDS 45.0%
GAGCTATCCTTGTCCAACAT+AGG - chr6.4:61170864-61170883 None:intergenic 45.0%
GAGTAAGAATGGAAGCTCCT+CGG + chr6.4:61170032-61170051 MS.gene059590:CDS 45.0%
GATGTGAAATTCGGAGGAAG+TGG + chr6.4:61171514-61171533 MS.gene059590:CDS 45.0%
GCATCACTCCAGGTATTTGA+GGG - chr6.4:61170746-61170765 None:intergenic 45.0%
GCATGACGAACAAAATCCTC+AGG - chr6.4:61171667-61171686 None:intergenic 45.0%
GGAGCTCAATCTGTGAGTAA+TGG + chr6.4:61170798-61170817 MS.gene059590:CDS 45.0%
GGTAAATCTCTTCTGCCCAT+TGG - chr6.4:61170595-61170614 None:intergenic 45.0%
GTATCCACCACAAGCTCAAA+TGG + chr6.4:61171559-61171578 MS.gene059590:CDS 45.0%
GTTGGACAAGGATAGCTCAT+GGG + chr6.4:61170866-61170885 MS.gene059590:CDS 45.0%
TCACAACCTGAAGACGTGAA+AGG + chr6.4:61171394-61171413 MS.gene059590:CDS 45.0%
TCAGCTTCCTATGTTGGACA+AGG + chr6.4:61170854-61170873 MS.gene059590:CDS 45.0%
TGCATCACTCCAGGTATTTG+AGG - chr6.4:61170747-61170766 None:intergenic 45.0%
TGGATACCCAAGGCAGATTT+GGG - chr6.4:61171546-61171565 None:intergenic 45.0%
TGTCCTTCCATTTGAGCTTG+TGG - chr6.4:61171569-61171588 None:intergenic 45.0%
TGTTGGACAAGGATAGCTCA+TGG + chr6.4:61170865-61170884 MS.gene059590:CDS 45.0%
TTCCTACCCAAATCTGCCTT+GGG + chr6.4:61171537-61171556 MS.gene059590:CDS 45.0%
TTGGACAAGGATAGCTCATG+GGG + chr6.4:61170867-61170886 MS.gene059590:CDS 45.0%
TTGTGAAGAGGAGCCTTCTT+CGG - chr6.4:61171380-61171399 None:intergenic 45.0%
! GACTCTTTTGCCGAAGTGTA+AGG - chr6.4:61170702-61170721 None:intergenic 45.0%
! TCACCTTTGGTTCGTTCTAG+CGG - chr6.4:61171340-61171359 None:intergenic 45.0%
!! TGATTCTGGCTTCTGAGGAT+CGG - chr6.4:61170124-61170143 None:intergenic 45.0%
AAACAGCGTGTCACCGAAGA+AGG + chr6.4:61171364-61171383 MS.gene059590:CDS 50.0%
AAGCTGAGAACTCTACCTCC+AGG + chr6.4:61170472-61170491 MS.gene059590:CDS 50.0%
AAGGAAGCAGCACAAACCTC+AGG + chr6.4:61171413-61171432 MS.gene059590:CDS 50.0%
ACTCCAGGTATTTGAGGGCT+TGG - chr6.4:61170741-61170760 None:intergenic 50.0%
ACTGCGGATGTGAAATTCGG+AGG + chr6.4:61171508-61171527 MS.gene059590:CDS 50.0%
AGAATCGTCTGTGCGTGTCA+TGG + chr6.4:61171628-61171647 MS.gene059590:CDS 50.0%
AGGAAGCAGCACAAACCTCA+GGG + chr6.4:61171414-61171433 MS.gene059590:CDS 50.0%
AGGGGAGAAGAAAACGGTAG+AGG + chr6.4:61170060-61170079 MS.gene059590:CDS 50.0%
ATGGAAGCTCCTCGGATACT+AGG + chr6.4:61170040-61170059 MS.gene059590:CDS 50.0%
CAGAAGCCAGAATCAAGTGG+TGG + chr6.4:61170129-61170148 MS.gene059590:CDS 50.0%
CATTAAGCCAGGGCTTACTG+CGG + chr6.4:61171492-61171511 MS.gene059590:CDS 50.0%
CCACCACAAGCTCAAATGGA+AGG + chr6.4:61171563-61171582 MS.gene059590:CDS 50.0%
CCAGAACAGTCGAAAGGTGA+AGG + chr6.4:61171448-61171467 MS.gene059590:CDS 50.0%
CCATCACTATGGTTGGAGAG+AGG - chr6.4:61170498-61170517 None:intergenic 50.0%
CCTCAGAAGCCAGAATCAAG+TGG + chr6.4:61170126-61170145 MS.gene059590:CDS 50.0%
CCTCTCTCCAACCATAGTGA+TGG + chr6.4:61170495-61170514 MS.gene059590:CDS 50.0%
CCTTCACCTTTCGACTGTTC+TGG - chr6.4:61171451-61171470 None:intergenic 50.0%
CCTTCCATTTGAGCTTGTGG+TGG - chr6.4:61171566-61171585 None:intergenic 50.0%
CTGCTTCCTTTCACGTCTTC+AGG - chr6.4:61171403-61171422 None:intergenic 50.0%
GATGAGCGGACCTTACACTT+CGG + chr6.4:61170689-61170708 MS.gene059590:CDS 50.0%
GATGCACCAGAACAGTCGAA+AGG + chr6.4:61171442-61171461 MS.gene059590:CDS 50.0%
GATGCTTCGAAAGAGGTTCG+TGG + chr6.4:61170552-61170571 MS.gene059590:CDS 50.0%
GGAAGCTTGCCGATGATGTT+TGG + chr6.4:61170819-61170838 MS.gene059590:CDS 50.0%
GGAGAAGAAAACGGTAGAGG+TGG + chr6.4:61170063-61170082 MS.gene059590:CDS 50.0%
GGCATCATATGCATCACTCC+AGG - chr6.4:61170756-61170775 None:intergenic 50.0%
GTGGATACCCAAGGCAGATT+TGG - chr6.4:61171547-61171566 None:intergenic 50.0%
GTTCCTACCCAAATCTGCCT+TGG + chr6.4:61171536-61171555 MS.gene059590:CDS 50.0%
TACCCAAGGCAGATTTGGGT+AGG - chr6.4:61171542-61171561 None:intergenic 50.0%
TGGAAGCTCCTCGGATACTA+GGG + chr6.4:61170041-61170060 MS.gene059590:CDS 50.0%
TGGTTCTCACATGACTCCTG+AGG + chr6.4:61171648-61171667 MS.gene059590:CDS 50.0%
TTCTTCTCCCCTAGTATCCG+AGG - chr6.4:61170052-61170071 None:intergenic 50.0%
! ACGCTGTTTCCCATCACCTT+TGG - chr6.4:61171353-61171372 None:intergenic 50.0%
!! CACGTCTTCAGGTTGTGAAG+AGG - chr6.4:61171392-61171411 None:intergenic 50.0%
!! CCACTTGATTCTGGCTTCTG+AGG - chr6.4:61170129-61170148 None:intergenic 50.0%
!!! GTTTTGGGAAGCTTGCCGAA+TGG + chr6.4:61171721-61171740 MS.gene059590:CDS 50.0%
ACTACAACCGGTGAACGTGC+AGG + chr6.4:61170777-61170796 MS.gene059590:CDS 55.0%
ACTATGGTTGGAGAGAGGCC+TGG - chr6.4:61170493-61170512 None:intergenic 55.0%
AGGCCGCTAGAACGAACCAA+AGG + chr6.4:61171334-61171353 MS.gene059590:CDS 55.0%
CATCCTTCCTTTGCAGGGAG+AGG + chr6.4:61170906-61170925 MS.gene059590:CDS 55.0%
CTTGCGGCCATAATGCAGTC+AGG - chr6.4:61171066-61171085 None:intergenic 55.0%
GAAATTCTCCTCGGGCTTCG+AGG - chr6.4:61170172-61170191 None:intergenic 55.0%
GCACCAAGCCCTCAAATACC+TGG + chr6.4:61170735-61170754 MS.gene059590:CDS 55.0%
GCTTCGAGGAATCAGCCCTT+CGG - chr6.4:61170158-61170177 None:intergenic 55.0%
GGAAGCAGCACAAACCTCAG+GGG + chr6.4:61171415-61171434 MS.gene059590:CDS 55.0%
GGAAGCTCCTCGGATACTAG+GGG + chr6.4:61170042-61170061 MS.gene059590:CDS 55.0%
TCTAGCGGCCTGCCTTCATA+CGG - chr6.4:61171325-61171344 None:intergenic 55.0%
TTCACATCCGCAGTAAGCCC+TGG - chr6.4:61171502-61171521 None:intergenic 55.0%
TTGAGCTCCTGCACGTTCAC+CGG - chr6.4:61170787-61170806 None:intergenic 55.0%
! AATCAAGTGGTGGGAGCCGA+AGG + chr6.4:61170139-61170158 MS.gene059590:CDS 55.0%
! AGCGGGCTTGAGCTCAGTTT+GGG + chr6.4:61169976-61169995 MS.gene059590:CDS 55.0%
! ATCAAGTGGTGGGAGCCGAA+GGG + chr6.4:61170140-61170159 MS.gene059590:CDS 55.0%
! GCACGTTCACCGGTTGTAGT+TGG - chr6.4:61170777-61170796 None:intergenic 55.0%
!! GAGCTTGTGGTGGATACCCA+AGG - chr6.4:61171556-61171575 None:intergenic 55.0%
!! TAGCGGGCTTGAGCTCAGTT+TGG + chr6.4:61169975-61169994 MS.gene059590:CDS 55.0%
!! TCGCTGACTCAAGCGCCAAT+GGG + chr6.4:61170577-61170596 MS.gene059590:CDS 55.0%
AGGCCATGCCGTATGAAGGC+AGG + chr6.4:61171314-61171333 MS.gene059590:CDS 60.0%
ATGGTTGGAGAGAGGCCTGG+AGG - chr6.4:61170490-61170509 None:intergenic 60.0%
CGGCTCCCACCACTTGATTC+TGG - chr6.4:61170138-61170157 None:intergenic 60.0%
CTGGTGCATCTTTGCCCCTG+AGG - chr6.4:61171432-61171451 None:intergenic 60.0%
GCCTTCATACGGCATGGCCT+CGG - chr6.4:61171314-61171333 None:intergenic 60.0%
TCCGAGGCCATGCCGTATGA+AGG + chr6.4:61171310-61171329 MS.gene059590:CDS 60.0%
!! GTCGCTGACTCAAGCGCCAA+TGG + chr6.4:61170576-61170595 MS.gene059590:CDS 60.0%
AGCTGGGCCTCTCCCTGCAA+AGG - chr6.4:61170916-61170935 None:intergenic 65.0%
CGGCCTGCCTTCATACGGCA+TGG - chr6.4:61171320-61171339 None:intergenic 65.0%
GGGAGAGGCCCAGCTAACTC+AGG + chr6.4:61170921-61170940 MS.gene059590:CDS 65.0%
GGGCCTCTCCCTGCAAAGGA+AGG - chr6.4:61170912-61170931 None:intergenic 65.0%
! GGCTGATTCCTCGAAGCCCG+AGG + chr6.4:61170161-61170180 MS.gene059590:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.4 gene 61169964 61171771 61169964 ID=MS.gene059590
chr6.4 mRNA 61169964 61171771 61169964 ID=MS.gene059590.t1;Parent=MS.gene059590
chr6.4 exon 61169964 61170942 61169964 ID=MS.gene059590.t1.exon1;Parent=MS.gene059590.t1
chr6.4 CDS 61169964 61170942 61169964 ID=cds.MS.gene059590.t1;Parent=MS.gene059590.t1
chr6.4 exon 61171287 61171771 61171287 ID=MS.gene059590.t1.exon2;Parent=MS.gene059590.t1
chr6.4 CDS 61171287 61171771 61171287 ID=cds.MS.gene059590.t1;Parent=MS.gene059590.t1
Gene Sequence

>MS.gene059590

ATGGAGGACGATAGCGGGCTTGAGCTCAGTTTGGGTTTATCTTTTGGTGGTTCATCAGCCAAAGCAAAGAGTAAGAATGGAAGCTCCTCGGATACTAGGGGAGAAGAAAACGGTAGAGGTGGAAAGATGGTTGATGATTTTAAGAGCATGTTTAATACCGATCCTCAGAAGCCAGAATCAAGTGGTGGGAGCCGAAGGGCTGATTCCTCGAAGCCCGAGGAGAATTTCTTTAGTGACCTTTCAAAGGTCAATGATGATAATGCTTCTTTGAATTTAAATGGAAGAGGATTTCTGGTTGGAAACAACAATAATAAACCAATTGAAATTGAGGAAAATAAACAGTCAGAGGCAGTAAATAAGCGAAGAATGTCTTTTGATGACATACGGAATCTAAAGAGGCATGACAGCGATGTTCATCATGGTGATTTACATGACAGGGCAAGAGCATCTCATATTTCTTTAACAGAAGATGGTTCAACTGCAGAAAATGAAGATGTGGCTGATTCTGAAGCTGAGAACTCTACCTCCAGGCCTCTCTCCAACCATAGTGATGGTTCTAAAGGATTCATTAGGGTCGGTGCTTCTTCTGATGCTTCGAAAGAGGTTCGTGGAGTCGCTGACTCAAGCGCCAATGGGCAGAAGAGATTTACCGGATCCACAGAAAAAGATTTCAAACATGCAAACATGACTTATGGTGCTCCTTTTTCTGCTCAACAAGTGAATATGATGAGCGGACCTTACACTTCGGCAAAAGAGTCAAACTCTGTTGGGGCACCAAGCCCTCAAATACCTGGAGTGATGCATATGATGCCAACTACAACCGGTGAACGTGCAGGAGCTCAATCTGTGAGTAATGGAAGCTTGCCGATGATGTTTGGACATCCGTATGTTCAGCTTCCTATGTTGGACAAGGATAGCTCATGGGGACGCCCTCAACAGTTTCATCCTTCCTTTGCAGGGAGAGGCCCAGCTAACTCAGGTAATTGTGATTTGAATGGACATTATTTCTAATTAATCCAATATTCCCGACTCAGAACTTCAAAGATCCAAGTCAAATTCATAAATTGTTAGTTAAAATGTTTTGGAATGTGCATATGTTCCTGACTGCATTATGGCCGCAAGTTTTGTAAACTGAACCAAATATTCTAAAATTGGTTGGAAGACTGGCATATTGAATTGGGTTGGATCTGATTTATATATGAAAAGTTAACGATTGTTATAGACATTTGTTTTTCTTTTTCATGCGCAAGCTCTATTGTTGTAGCTTGATACTTACTGAGTTTTTTTTGGAAATTACATTATGTCATTATTGTGTCGATGCAGCTGCGTTACATCTAAACAATATATCCGAGGCCATGCCGTATGAAGGCAGGCCGCTAGAACGAACCAAAGGTGATGGGAAACAGCGTGTCACCGAAGAAGGCTCCTCTTCACAACCTGAAGACGTGAAAGGAAGCAGCACAAACCTCAGGGGCAAAGATGCACCAGAACAGTCGAAAGGTGAAGGTTCCACCATTGATTTTTCAAACATTAAGCCAGGGCTTACTGCGGATGTGAAATTCGGAGGAAGTGGTTCCTACCCAAATCTGCCTTGGGTATCCACCACAAGCTCAAATGGAAGGACAATATCAGGTGTTACTTACAGGTACAACACTAACCAAATCAGAATCGTCTGTGCGTGTCATGGTTCTCACATGACTCCTGAGGATTTTGTTCGTCATGCAAATGACGAACAAACCAATTCAGATAGCAATTCGGTTTTGGGAAGCTTGCCGAATGGTAATCTTGGTTCATCTTCTCACAGTTAG

Protein sequence

>MS.gene059590.t1

MEDDSGLELSLGLSFGGSSAKAKSKNGSSSDTRGEENGRGGKMVDDFKSMFNTDPQKPESSGGSRRADSSKPEENFFSDLSKVNDDNASLNLNGRGFLVGNNNNKPIEIEENKQSEAVNKRRMSFDDIRNLKRHDSDVHHGDLHDRARASHISLTEDGSTAENEDVADSEAENSTSRPLSNHSDGSKGFIRVGASSDASKEVRGVADSSANGQKRFTGSTEKDFKHANMTYGAPFSAQQVNMMSGPYTSAKESNSVGAPSPQIPGVMHMMPTTTGERAGAQSVSNGSLPMMFGHPYVQLPMLDKDSSWGRPQQFHPSFAGRGPANSAALHLNNISEAMPYEGRPLERTKGDGKQRVTEEGSSSQPEDVKGSSTNLRGKDAPEQSKGEGSTIDFSNIKPGLTADVKFGGSGSYPNLPWVSTTSSNGRTISGVTYRYNTNQIRIVCACHGSHMTPEDFVRHANDEQTNSDSNSVLGSLPNGNLGSSSHS