Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059590.t1 | XP_024641325.1 | 99 | 487 | 5 | 0 | 1 | 487 | 1 | 487 | 6.90E-269 | 936 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059590.t1 | Q53HY2 | 45.8 | 513 | 246 | 11 | 3 | 487 | 2 | 510 | 3.6e-101 | 370.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059590.t1 | G7KNZ7 | 99.0 | 487 | 5 | 0 | 1 | 487 | 1 | 487 | 5.0e-269 | 936.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene059590 | MS.gene067571 | 0.812371 | 4.38E-51 | -1.69E-46 |
MS.gene059590 | MS.gene068166 | 0.804741 | 1.87E-49 | -1.69E-46 |
MS.gene059590 | MS.gene069828 | 0.83159 | 1.53E-55 | -1.69E-46 |
MS.gene059590 | MS.gene073232 | 0.80737 | 5.22E-50 | -1.69E-46 |
MS.gene059590 | MS.gene08649 | 0.806081 | 9.78E-50 | -1.69E-46 |
MS.gene059590 | MS.gene25024 | 0.814498 | 1.49E-51 | -1.69E-46 |
MS.gene059590 | MS.gene33521 | 0.804477 | 2.12E-49 | -1.69E-46 |
MS.gene059590 | MS.gene38145 | 0.802084 | 6.64E-49 | -1.69E-46 |
MS.gene059590 | MS.gene43682 | 0.850409 | 1.73E-60 | -1.69E-46 |
MS.gene059590 | MS.gene46305 | 0.811526 | 6.70E-51 | -1.69E-46 |
MS.gene059590 | MS.gene47674 | 0.826671 | 2.39E-54 | -1.69E-46 |
MS.gene059590 | MS.gene47995 | 0.848183 | 7.21E-60 | -1.69E-46 |
MS.gene059590 | MS.gene49664 | 0.806974 | 6.34E-50 | -1.69E-46 |
MS.gene059590 | MS.gene54163 | 0.806956 | 6.39E-50 | -1.69E-46 |
MS.gene059590 | MS.gene54573 | 0.805472 | 1.31E-49 | -1.69E-46 |
MS.gene059590 | MS.gene56436 | 0.817172 | 3.78E-52 | -1.69E-46 |
MS.gene059590 | MS.gene71994 | 0.808398 | 3.16E-50 | -1.69E-46 |
MS.gene059590 | MS.gene81055 | 0.833707 | 4.57E-56 | -1.69E-46 |
MS.gene059590 | MS.gene86991 | 0.800554 | 1.36E-48 | -1.69E-46 |
MS.gene059590 | MS.gene94992 | 0.806677 | 7.32E-50 | -1.69E-46 |
MS.gene059590 | MS.gene95332 | 0.804981 | 1.66E-49 | -1.69E-46 |
MS.gene059590 | MS.gene96690 | 0.816551 | 5.22E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059590.t1 | MTR_6g087140 | 98.973 | 487 | 5 | 0 | 1 | 487 | 1 | 487 | 0.0 | 988 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059590.t1 | AT4G28910 | 41.414 | 495 | 183 | 19 | 1 | 469 | 1 | 414 | 9.49e-93 | 288 |
MS.gene059590.t1 | AT4G28910 | 41.414 | 495 | 183 | 19 | 1 | 469 | 1 | 414 | 9.49e-93 | 288 |
MS.gene059590.t1 | AT4G28910 | 41.414 | 495 | 183 | 19 | 1 | 469 | 1 | 414 | 9.49e-93 | 288 |
Find 145 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATGCTTCTTTGAATTTAAA+TGG | 0.163556 | 6.4:+61170222 | MS.gene059590:CDS |
CGGCTCCCACCACTTGATTC+TGG | 0.178593 | 6.4:-61170135 | None:intergenic |
TTTAAATGGAAGAGGATTTC+TGG | 0.193854 | 6.4:+61170236 | MS.gene059590:CDS |
CTCAGTTTGGGTTTATCTTT+TGG | 0.194235 | 6.4:+61169988 | MS.gene059590:CDS |
CTGCTTCCTTTCACGTCTTC+AGG | 0.217298 | 6.4:-61171400 | None:intergenic |
TTCAGATAGCAATTCGGTTT+TGG | 0.226700 | 6.4:+61171705 | MS.gene059590:CDS |
CAGTTTCATCCTTCCTTTGC+AGG | 0.256187 | 6.4:+61170900 | MS.gene059590:CDS |
CCTTCACCTTTCGACTGTTC+TGG | 0.269268 | 6.4:-61171448 | None:intergenic |
TTCACTTGTTGAGCAGAAAA+AGG | 0.274328 | 6.4:-61170663 | None:intergenic |
ATGGTTCTAAAGGATTCATT+AGG | 0.299700 | 6.4:+61170514 | MS.gene059590:CDS |
GTGGATACCCAAGGCAGATT+TGG | 0.307968 | 6.4:-61171544 | None:intergenic |
AACCGAATTGCTATCTGAAT+TGG | 0.313360 | 6.4:-61171701 | None:intergenic |
AAACATGCAAACATGACTTA+TGG | 0.318828 | 6.4:+61170636 | MS.gene059590:CDS |
TCCATTCTTACTCTTTGCTT+TGG | 0.338919 | 6.4:-61170022 | None:intergenic |
TAGCGGGCTTGAGCTCAGTT+TGG | 0.357348 | 6.4:+61169975 | MS.gene059590:CDS |
ACTCCAGGTATTTGAGGGCT+TGG | 0.360299 | 6.4:-61170738 | None:intergenic |
TCAAATGGAAGGACAATATC+AGG | 0.363492 | 6.4:+61171574 | MS.gene059590:CDS |
CAATATCAGGTGTTACTTAC+AGG | 0.371934 | 6.4:+61171587 | MS.gene059590:CDS |
ATGGAAGCTCCTCGGATACT+AGG | 0.374951 | 6.4:+61170040 | MS.gene059590:CDS |
ACGCACAGACGATTCTGATT+TGG | 0.379964 | 6.4:-61171621 | None:intergenic |
CATATTTCTTTAACAGAAGA+TGG | 0.381021 | 6.4:+61170414 | MS.gene059590:CDS |
ACGCTGTTTCCCATCACCTT+TGG | 0.386142 | 6.4:-61171350 | None:intergenic |
GGAAGCTTGCCGATGATGTT+TGG | 0.388261 | 6.4:+61170819 | MS.gene059590:CDS |
AGCGGGCTTGAGCTCAGTTT+GGG | 0.391762 | 6.4:+61169976 | MS.gene059590:CDS |
CAAAAGAGTCAAACTCTGTT+GGG | 0.393194 | 6.4:+61170712 | MS.gene059590:CDS |
CATCCTTCCTTTGCAGGGAG+AGG | 0.404447 | 6.4:+61170906 | MS.gene059590:CDS |
GCCTTCATACGGCATGGCCT+CGG | 0.418342 | 6.4:-61171311 | None:intergenic |
TGGATACCCAAGGCAGATTT+GGG | 0.424790 | 6.4:-61171543 | None:intergenic |
GCCAAAGCAAAGAGTAAGAA+TGG | 0.424949 | 6.4:+61170021 | MS.gene059590:CDS |
AATGGGCAGAAGAGATTTAC+CGG | 0.429122 | 6.4:+61170594 | MS.gene059590:CDS |
CTTACTGCGGATGTGAAATT+CGG | 0.437474 | 6.4:+61171505 | MS.gene059590:CDS |
TTCCTACCCAAATCTGCCTT+GGG | 0.439337 | 6.4:+61171537 | MS.gene059590:CDS |
ATCCTTTAGAACCATCACTA+TGG | 0.440075 | 6.4:-61170506 | None:intergenic |
CCACTTGATTCTGGCTTCTG+AGG | 0.440930 | 6.4:-61170126 | None:intergenic |
TCACAATTACCTGAGTTAGC+TGG | 0.441376 | 6.4:-61170930 | None:intergenic |
AGCTTGCCGAATGGTAATCT+TGG | 0.447111 | 6.4:+61171730 | MS.gene059590:CDS |
TGCATCACTCCAGGTATTTG+AGG | 0.452843 | 6.4:-61170744 | None:intergenic |
CATATGATGCCAACTACAAC+CGG | 0.452935 | 6.4:+61170765 | MS.gene059590:CDS |
TTGTGAAGAGGAGCCTTCTT+CGG | 0.455235 | 6.4:-61171377 | None:intergenic |
GTCGCTGACTCAAGCGCCAA+TGG | 0.463056 | 6.4:+61170576 | MS.gene059590:CDS |
AACCAATTCAGATAGCAATT+CGG | 0.466685 | 6.4:+61171699 | MS.gene059590:CDS |
TGGAAGCTCCTCGGATACTA+GGG | 0.468275 | 6.4:+61170041 | MS.gene059590:CDS |
GAAATTCTCCTCGGGCTTCG+AGG | 0.470253 | 6.4:-61170169 | None:intergenic |
GTATCCACCACAAGCTCAAA+TGG | 0.471490 | 6.4:+61171559 | MS.gene059590:CDS |
GCACGTTCACCGGTTGTAGT+TGG | 0.472212 | 6.4:-61170774 | None:intergenic |
CACAATTACCTGAGTTAGCT+GGG | 0.474611 | 6.4:-61170929 | None:intergenic |
AACCATAGTGATGGTTCTAA+AGG | 0.476953 | 6.4:+61170504 | MS.gene059590:CDS |
TTCTTCTGATGCTTCGAAAG+AGG | 0.478218 | 6.4:+61170545 | MS.gene059590:CDS |
TGGTTCTAAAGGATTCATTA+GGG | 0.480605 | 6.4:+61170515 | MS.gene059590:CDS |
TTGAGCTCCTGCACGTTCAC+CGG | 0.483475 | 6.4:-61170784 | None:intergenic |
AAGGAAGCAGCACAAACCTC+AGG | 0.489023 | 6.4:+61171413 | MS.gene059590:CDS |
TAATAAACCAATTGAAATTG+AGG | 0.489212 | 6.4:+61170272 | MS.gene059590:CDS |
GTTCCTACCCAAATCTGCCT+TGG | 0.490143 | 6.4:+61171536 | MS.gene059590:CDS |
GCAAAAGAGTCAAACTCTGT+TGG | 0.492235 | 6.4:+61170711 | MS.gene059590:CDS |
GCATCACTCCAGGTATTTGA+GGG | 0.494358 | 6.4:-61170743 | None:intergenic |
GGTAAATCTCTTCTGCCCAT+TGG | 0.495423 | 6.4:-61170592 | None:intergenic |
TTCACATCCGCAGTAAGCCC+TGG | 0.497434 | 6.4:-61171499 | None:intergenic |
AATCAAGTGGTGGGAGCCGA+AGG | 0.500762 | 6.4:+61170139 | MS.gene059590:CDS |
AAACAGCGTGTCACCGAAGA+AGG | 0.502399 | 6.4:+61171364 | MS.gene059590:CDS |
TGCAATATGGAGGACGATAG+CGG | 0.508877 | 6.4:+61169958 | None:intergenic |
GTATGTTCAGCTTCCTATGT+TGG | 0.509167 | 6.4:+61170848 | MS.gene059590:CDS |
TGTCCTTCCATTTGAGCTTG+TGG | 0.512711 | 6.4:-61171566 | None:intergenic |
TATCATCATTGACCTTTGAA+AGG | 0.513280 | 6.4:-61170200 | None:intergenic |
TTTAGAACCATCACTATGGT+TGG | 0.516423 | 6.4:-61170502 | None:intergenic |
ATCATGGTGATTTACATGAC+AGG | 0.518312 | 6.4:+61170379 | MS.gene059590:CDS |
TCTTTGAATTTAAATGGAAG+AGG | 0.522869 | 6.4:+61170228 | MS.gene059590:CDS |
TCCGAGGCCATGCCGTATGA+AGG | 0.523566 | 6.4:+61171310 | MS.gene059590:CDS |
GATGTGAAATTCGGAGGAAG+TGG | 0.523767 | 6.4:+61171514 | MS.gene059590:CDS |
AATGGAAGAGGATTTCTGGT+TGG | 0.524300 | 6.4:+61170240 | MS.gene059590:CDS |
GCACCAAGCCCTCAAATACC+TGG | 0.525712 | 6.4:+61170735 | MS.gene059590:CDS |
AGGCCATGCCGTATGAAGGC+AGG | 0.527342 | 6.4:+61171314 | MS.gene059590:CDS |
TCGCTGACTCAAGCGCCAAT+GGG | 0.528288 | 6.4:+61170577 | MS.gene059590:CDS |
GGGCCTCTCCCTGCAAAGGA+AGG | 0.535109 | 6.4:-61170909 | None:intergenic |
GTCACTAAAGAAATTCTCCT+CGG | 0.539850 | 6.4:-61170178 | None:intergenic |
TGATTCTGGCTTCTGAGGAT+CGG | 0.542330 | 6.4:-61170121 | None:intergenic |
CGGCCTGCCTTCATACGGCA+TGG | 0.542332 | 6.4:-61171317 | None:intergenic |
GCAATATGGAGGACGATAGC+GGG | 0.544052 | 6.4:+61169959 | None:intergenic |
AAACGGTAGAGGTGGAAAGA+TGG | 0.544120 | 6.4:+61170071 | MS.gene059590:CDS |
CACGTCTTCAGGTTGTGAAG+AGG | 0.545832 | 6.4:-61171389 | None:intergenic |
TTCTTCTCCCCTAGTATCCG+AGG | 0.546199 | 6.4:-61170049 | None:intergenic |
AGTTTCATCCTTCCTTTGCA+GGG | 0.548370 | 6.4:+61170901 | MS.gene059590:CDS |
TTTCTTTAGTGACCTTTCAA+AGG | 0.548399 | 6.4:+61170188 | MS.gene059590:CDS |
GGAGAAGAAAACGGTAGAGG+TGG | 0.549135 | 6.4:+61170063 | MS.gene059590:CDS |
GCTTCGAGGAATCAGCCCTT+CGG | 0.549711 | 6.4:-61170155 | None:intergenic |
CTGGTGCATCTTTGCCCCTG+AGG | 0.550568 | 6.4:-61171429 | None:intergenic |
CTAGAACGAACCAAAGGTGA+TGG | 0.556734 | 6.4:+61171340 | MS.gene059590:CDS |
GATACTAGGGGAGAAGAAAA+CGG | 0.558531 | 6.4:+61170054 | MS.gene059590:CDS |
CCTTCCATTTGAGCTTGTGG+TGG | 0.558546 | 6.4:-61171563 | None:intergenic |
GCATGACGAACAAAATCCTC+AGG | 0.559639 | 6.4:-61171664 | None:intergenic |
ACTATGGTTGGAGAGAGGCC+TGG | 0.560010 | 6.4:-61170490 | None:intergenic |
TCACTAAAGAAATTCTCCTC+GGG | 0.560421 | 6.4:-61170177 | None:intergenic |
GATGCTTCGAAAGAGGTTCG+TGG | 0.563001 | 6.4:+61170552 | MS.gene059590:CDS |
AAGCTGAGAACTCTACCTCC+AGG | 0.564043 | 6.4:+61170472 | MS.gene059590:CDS |
GGAGCTCAATCTGTGAGTAA+TGG | 0.566490 | 6.4:+61170798 | MS.gene059590:CDS |
TCACAACCTGAAGACGTGAA+AGG | 0.567779 | 6.4:+61171394 | MS.gene059590:CDS |
AACATAGGAAGCTGAACATA+CGG | 0.571663 | 6.4:-61170846 | None:intergenic |
AGCTGGGCCTCTCCCTGCAA+AGG | 0.572843 | 6.4:-61170913 | None:intergenic |
GGCATCATATGCATCACTCC+AGG | 0.573713 | 6.4:-61170753 | None:intergenic |
GAGTAAGAATGGAAGCTCCT+CGG | 0.574013 | 6.4:+61170032 | MS.gene059590:CDS |
ATGACATACGGAATCTAAAG+AGG | 0.574178 | 6.4:+61170340 | MS.gene059590:CDS |
TCACCTTTGGTTCGTTCTAG+CGG | 0.576196 | 6.4:-61171337 | None:intergenic |
AGGAAGCAGCACAAACCTCA+GGG | 0.577639 | 6.4:+61171414 | MS.gene059590:CDS |
GAGCTATCCTTGTCCAACAT+AGG | 0.579094 | 6.4:-61170861 | None:intergenic |
GATGAACCAAGATTACCATT+CGG | 0.580457 | 6.4:-61171736 | None:intergenic |
TGTTGGACAAGGATAGCTCA+TGG | 0.582770 | 6.4:+61170865 | MS.gene059590:CDS |
GAGCTTGTGGTGGATACCCA+AGG | 0.584613 | 6.4:-61171553 | None:intergenic |
TCTAAAGGATTCATTAGGGT+CGG | 0.586057 | 6.4:+61170519 | MS.gene059590:CDS |
AGAATCGTCTGTGCGTGTCA+TGG | 0.586566 | 6.4:+61171628 | MS.gene059590:CDS |
ACTACAACCGGTGAACGTGC+AGG | 0.587532 | 6.4:+61170777 | MS.gene059590:CDS |
CATGACAGCGATGTTCATCA+TGG | 0.588517 | 6.4:+61170363 | MS.gene059590:CDS |
TAGAACGAACCAAAGGTGAT+GGG | 0.588598 | 6.4:+61171341 | MS.gene059590:CDS |
CCAGAACAGTCGAAAGGTGA+AGG | 0.589987 | 6.4:+61171448 | MS.gene059590:CDS |
AAGGAAGGATGAAACTGTTG+AGG | 0.591748 | 6.4:-61170894 | None:intergenic |
GGGAGAGGCCCAGCTAACTC+AGG | 0.593652 | 6.4:+61170921 | MS.gene059590:CDS |
AGGAAGGATGAAACTGTTGA+GGG | 0.596334 | 6.4:-61170893 | None:intergenic |
GTTGGACAAGGATAGCTCAT+GGG | 0.597490 | 6.4:+61170866 | MS.gene059590:CDS |
AAAAGAGTCAAACTCTGTTG+GGG | 0.602879 | 6.4:+61170713 | MS.gene059590:CDS |
TGAGGAAAATAAACAGTCAG+AGG | 0.603148 | 6.4:+61170290 | MS.gene059590:CDS |
TACGGATGTCCAAACATCAT+CGG | 0.603516 | 6.4:-61170828 | None:intergenic |
AGGGGAGAAGAAAACGGTAG+AGG | 0.608767 | 6.4:+61170060 | MS.gene059590:CDS |
CCTCTCTCCAACCATAGTGA+TGG | 0.609945 | 6.4:+61170495 | MS.gene059590:CDS |
TCTAGCGGCCTGCCTTCATA+CGG | 0.615919 | 6.4:-61171322 | None:intergenic |
CAGAAGCCAGAATCAAGTGG+TGG | 0.622703 | 6.4:+61170129 | MS.gene059590:CDS |
ATCAAGTGGTGGGAGCCGAA+GGG | 0.624954 | 6.4:+61170140 | MS.gene059590:CDS |
TCAGCTTCCTATGTTGGACA+AGG | 0.624986 | 6.4:+61170854 | MS.gene059590:CDS |
AACTGCAGAAAATGAAGATG+TGG | 0.629556 | 6.4:+61170440 | MS.gene059590:CDS |
GGCTGATTCCTCGAAGCCCG+AGG | 0.632441 | 6.4:+61170161 | MS.gene059590:CDS |
AGAAGCCAGAATCAAGTGGT+GGG | 0.633124 | 6.4:+61170130 | MS.gene059590:CDS |
CCACCACAAGCTCAAATGGA+AGG | 0.636715 | 6.4:+61171563 | MS.gene059590:CDS |
TCATGGTGATTTACATGACA+GGG | 0.638749 | 6.4:+61170380 | MS.gene059590:CDS |
TTGGACAAGGATAGCTCATG+GGG | 0.649802 | 6.4:+61170867 | MS.gene059590:CDS |
CCATCACTATGGTTGGAGAG+AGG | 0.650575 | 6.4:-61170495 | None:intergenic |
TGGTTCTCACATGACTCCTG+AGG | 0.661496 | 6.4:+61171648 | MS.gene059590:CDS |
ACTGCGGATGTGAAATTCGG+AGG | 0.662716 | 6.4:+61171508 | MS.gene059590:CDS |
CCTCAGAAGCCAGAATCAAG+TGG | 0.662921 | 6.4:+61170126 | MS.gene059590:CDS |
TACCCAAGGCAGATTTGGGT+AGG | 0.663102 | 6.4:-61171539 | None:intergenic |
ACATCTAAACAATATATCCG+AGG | 0.671648 | 6.4:+61171294 | MS.gene059590:CDS |
GATGCACCAGAACAGTCGAA+AGG | 0.674903 | 6.4:+61171442 | MS.gene059590:CDS |
GATGAGCGGACCTTACACTT+CGG | 0.678313 | 6.4:+61170689 | MS.gene059590:CDS |
GGAAGCTCCTCGGATACTAG+GGG | 0.687484 | 6.4:+61170042 | MS.gene059590:CDS |
CATTAAGCCAGGGCTTACTG+CGG | 0.687627 | 6.4:+61171492 | MS.gene059590:CDS |
AGGCCGCTAGAACGAACCAA+AGG | 0.687826 | 6.4:+61171334 | MS.gene059590:CDS |
GGAAGCAGCACAAACCTCAG+GGG | 0.704276 | 6.4:+61171415 | MS.gene059590:CDS |
ATGGTTGGAGAGAGGCCTGG+AGG | 0.705449 | 6.4:-61170487 | None:intergenic |
CAACAAGTGAATATGATGAG+CGG | 0.706230 | 6.4:+61170675 | MS.gene059590:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTGTTAGTTAAAATGTTT+TGG | + | chr6.4:61171026-61171045 | MS.gene059590:intron | 15.0% |
!! | AACAATTTATGAATTTGACT+TGG | - | chr6.4:61171013-61171032 | None:intergenic | 20.0% |
!! | AATGCTTCTTTGAATTTAAA+TGG | + | chr6.4:61170222-61170241 | MS.gene059590:CDS | 20.0% |
!! | CTTAATGTTTGAAAAATCAA+TGG | - | chr6.4:61171479-61171498 | None:intergenic | 20.0% |
!! | TAATAAACCAATTGAAATTG+AGG | + | chr6.4:61170272-61170291 | MS.gene059590:CDS | 20.0% |
!!! | TGAACCAAATATTCTAAAAT+TGG | + | chr6.4:61171096-61171115 | MS.gene059590:intron | 20.0% |
!!! | TTATTTTCCTCAATTTCAAT+TGG | - | chr6.4:61170282-61170301 | None:intergenic | 20.0% |
! | AATGTTTGAAAAATCAATGG+TGG | - | chr6.4:61171476-61171495 | None:intergenic | 25.0% |
! | CATATTTCTTTAACAGAAGA+TGG | + | chr6.4:61170414-61170433 | MS.gene059590:CDS | 25.0% |
! | TCTTTGAATTTAAATGGAAG+AGG | + | chr6.4:61170228-61170247 | MS.gene059590:CDS | 25.0% |
!!! | ATGTTTGAAATCTTTTTCTG+TGG | - | chr6.4:61170622-61170641 | None:intergenic | 25.0% |
!!! | ATTTTTCAAACATTAAGCCA+GGG | + | chr6.4:61171482-61171501 | MS.gene059590:CDS | 25.0% |
!!! | CCAAATATTCTAAAATTGGT+TGG | + | chr6.4:61171100-61171119 | MS.gene059590:intron | 25.0% |
!!! | CCAACCAATTTTAGAATATT+TGG | - | chr6.4:61171103-61171122 | None:intergenic | 25.0% |
!!! | GATACTTACTGAGTTTTTTT+TGG | + | chr6.4:61171231-61171250 | MS.gene059590:intron | 25.0% |
AAACATGCAAACATGACTTA+TGG | + | chr6.4:61170636-61170655 | MS.gene059590:CDS | 30.0% | |
AACCAATTCAGATAGCAATT+CGG | + | chr6.4:61171699-61171718 | MS.gene059590:CDS | 30.0% | |
ACATCTAAACAATATATCCG+AGG | + | chr6.4:61171294-61171313 | MS.gene059590:CDS | 30.0% | |
TATCATCATTGACCTTTGAA+AGG | - | chr6.4:61170203-61170222 | None:intergenic | 30.0% | |
TCAGGTAATTGTGATTTGAA+TGG | + | chr6.4:61170939-61170958 | MS.gene059590:intron | 30.0% | |
TTTAAATGGAAGAGGATTTC+TGG | + | chr6.4:61170236-61170255 | MS.gene059590:CDS | 30.0% | |
TTTCTTTAGTGACCTTTCAA+AGG | + | chr6.4:61170188-61170207 | MS.gene059590:CDS | 30.0% | |
!! | ATGGTTCTAAAGGATTCATT+AGG | + | chr6.4:61170514-61170533 | MS.gene059590:CDS | 30.0% |
!! | GAATGTCTTTTGATGACATA+CGG | + | chr6.4:61170328-61170347 | MS.gene059590:CDS | 30.0% |
!! | GATTTTTCAAACATTAAGCC+AGG | + | chr6.4:61171481-61171500 | MS.gene059590:CDS | 30.0% |
!! | TGGTTCTAAAGGATTCATTA+GGG | + | chr6.4:61170515-61170534 | MS.gene059590:CDS | 30.0% |
AAAAGAGTCAAACTCTGTTG+GGG | + | chr6.4:61170713-61170732 | MS.gene059590:CDS | 35.0% | |
AACATAGGAAGCTGAACATA+CGG | - | chr6.4:61170849-61170868 | None:intergenic | 35.0% | |
AACCGAATTGCTATCTGAAT+TGG | - | chr6.4:61171704-61171723 | None:intergenic | 35.0% | |
AACTGCAGAAAATGAAGATG+TGG | + | chr6.4:61170440-61170459 | MS.gene059590:CDS | 35.0% | |
ATATGTTCCTGACTGCATTA+TGG | + | chr6.4:61171056-61171075 | MS.gene059590:intron | 35.0% | |
ATCATGGTGATTTACATGAC+AGG | + | chr6.4:61170379-61170398 | MS.gene059590:CDS | 35.0% | |
ATGACATACGGAATCTAAAG+AGG | + | chr6.4:61170340-61170359 | MS.gene059590:CDS | 35.0% | |
CAAAAGAGTCAAACTCTGTT+GGG | + | chr6.4:61170712-61170731 | MS.gene059590:CDS | 35.0% | |
CAACAAGTGAATATGATGAG+CGG | + | chr6.4:61170675-61170694 | MS.gene059590:CDS | 35.0% | |
GAAGACTGGCATATTGAATT+GGG | + | chr6.4:61171122-61171141 | MS.gene059590:intron | 35.0% | |
GATGAACCAAGATTACCATT+CGG | - | chr6.4:61171739-61171758 | None:intergenic | 35.0% | |
GGTTCAGTTTACAAAACTTG+CGG | - | chr6.4:61171082-61171101 | None:intergenic | 35.0% | |
GTCACTAAAGAAATTCTCCT+CGG | - | chr6.4:61170181-61170200 | None:intergenic | 35.0% | |
TCAAATGGAAGGACAATATC+AGG | + | chr6.4:61171574-61171593 | MS.gene059590:CDS | 35.0% | |
TCACTAAAGAAATTCTCCTC+GGG | - | chr6.4:61170180-61170199 | None:intergenic | 35.0% | |
TCATGGTGATTTACATGACA+GGG | + | chr6.4:61170380-61170399 | MS.gene059590:CDS | 35.0% | |
TCCATTCTTACTCTTTGCTT+TGG | - | chr6.4:61170025-61170044 | None:intergenic | 35.0% | |
TCTAAAGGATTCATTAGGGT+CGG | + | chr6.4:61170519-61170538 | MS.gene059590:CDS | 35.0% | |
TGAGGAAAATAAACAGTCAG+AGG | + | chr6.4:61170290-61170309 | MS.gene059590:CDS | 35.0% | |
! | GAAATCTTTTTCTGTGGATC+CGG | - | chr6.4:61170616-61170635 | None:intergenic | 35.0% |
! | TCAGATAGCAATTCGGTTTT+GGG | + | chr6.4:61171706-61171725 | MS.gene059590:CDS | 35.0% |
! | TCTAAAATTGGTTGGAAGAC+TGG | + | chr6.4:61171108-61171127 | MS.gene059590:intron | 35.0% |
! | TTCACTTGTTGAGCAGAAAA+AGG | - | chr6.4:61170666-61170685 | None:intergenic | 35.0% |
! | TTCAGATAGCAATTCGGTTT+TGG | + | chr6.4:61171705-61171724 | MS.gene059590:CDS | 35.0% |
! | TTTAGAACCATCACTATGGT+TGG | - | chr6.4:61170505-61170524 | None:intergenic | 35.0% |
!! | AACCATAGTGATGGTTCTAA+AGG | + | chr6.4:61170504-61170523 | MS.gene059590:CDS | 35.0% |
!! | AGTTTGGGTTTATCTTTTGG+TGG | + | chr6.4:61169991-61170010 | MS.gene059590:CDS | 35.0% |
!! | ATCCTTTAGAACCATCACTA+TGG | - | chr6.4:61170509-61170528 | None:intergenic | 35.0% |
!! | CAATATCAGGTGTTACTTAC+AGG | + | chr6.4:61171587-61171606 | MS.gene059590:CDS | 35.0% |
!! | CTCAGTTTGGGTTTATCTTT+TGG | + | chr6.4:61169988-61170007 | MS.gene059590:CDS | 35.0% |
AAGGAAGGATGAAACTGTTG+AGG | - | chr6.4:61170897-61170916 | None:intergenic | 40.0% | |
AATGGGCAGAAGAGATTTAC+CGG | + | chr6.4:61170594-61170613 | MS.gene059590:CDS | 40.0% | |
ACTGGCATATTGAATTGGGT+TGG | + | chr6.4:61171126-61171145 | MS.gene059590:intron | 40.0% | |
AGGAAGGATGAAACTGTTGA+GGG | - | chr6.4:61170896-61170915 | None:intergenic | 40.0% | |
AGTTTCATCCTTCCTTTGCA+GGG | + | chr6.4:61170901-61170920 | MS.gene059590:CDS | 40.0% | |
CACAATTACCTGAGTTAGCT+GGG | - | chr6.4:61170932-61170951 | None:intergenic | 40.0% | |
CATATGATGCCAACTACAAC+CGG | + | chr6.4:61170765-61170784 | MS.gene059590:CDS | 40.0% | |
CTTACTGCGGATGTGAAATT+CGG | + | chr6.4:61171505-61171524 | MS.gene059590:CDS | 40.0% | |
GATACTAGGGGAGAAGAAAA+CGG | + | chr6.4:61170054-61170073 | MS.gene059590:CDS | 40.0% | |
GCAAAAGAGTCAAACTCTGT+TGG | + | chr6.4:61170711-61170730 | MS.gene059590:CDS | 40.0% | |
GCCAAAGCAAAGAGTAAGAA+TGG | + | chr6.4:61170021-61170040 | MS.gene059590:CDS | 40.0% | |
GGAAGACTGGCATATTGAAT+TGG | + | chr6.4:61171121-61171140 | MS.gene059590:intron | 40.0% | |
GTATGTTCAGCTTCCTATGT+TGG | + | chr6.4:61170848-61170867 | MS.gene059590:CDS | 40.0% | |
TACGGATGTCCAAACATCAT+CGG | - | chr6.4:61170831-61170850 | None:intergenic | 40.0% | |
TAGAACGAACCAAAGGTGAT+GGG | + | chr6.4:61171341-61171360 | MS.gene059590:CDS | 40.0% | |
TCACAATTACCTGAGTTAGC+TGG | - | chr6.4:61170933-61170952 | None:intergenic | 40.0% | |
TTCTTCTGATGCTTCGAAAG+AGG | + | chr6.4:61170545-61170564 | MS.gene059590:CDS | 40.0% | |
!! | AAGTTCTGAGTCGGGAATAT+TGG | - | chr6.4:61170983-61171002 | None:intergenic | 40.0% |
!! | AATGGAAGAGGATTTCTGGT+TGG | + | chr6.4:61170240-61170259 | MS.gene059590:CDS | 40.0% |
!! | GATCTTTGAAGTTCTGAGTC+GGG | - | chr6.4:61170991-61171010 | None:intergenic | 40.0% |
!! | GGATCTTTGAAGTTCTGAGT+CGG | - | chr6.4:61170992-61171011 | None:intergenic | 40.0% |
AAACGGTAGAGGTGGAAAGA+TGG | + | chr6.4:61170071-61170090 | MS.gene059590:CDS | 45.0% | |
ACGCACAGACGATTCTGATT+TGG | - | chr6.4:61171624-61171643 | None:intergenic | 45.0% | |
AGAAGCCAGAATCAAGTGGT+GGG | + | chr6.4:61170130-61170149 | MS.gene059590:CDS | 45.0% | |
AGCTTGCCGAATGGTAATCT+TGG | + | chr6.4:61171730-61171749 | MS.gene059590:CDS | 45.0% | |
CAGTTTCATCCTTCCTTTGC+AGG | + | chr6.4:61170900-61170919 | MS.gene059590:CDS | 45.0% | |
CATGACAGCGATGTTCATCA+TGG | + | chr6.4:61170363-61170382 | MS.gene059590:CDS | 45.0% | |
CTAGAACGAACCAAAGGTGA+TGG | + | chr6.4:61171340-61171359 | MS.gene059590:CDS | 45.0% | |
GAGCTATCCTTGTCCAACAT+AGG | - | chr6.4:61170864-61170883 | None:intergenic | 45.0% | |
GAGTAAGAATGGAAGCTCCT+CGG | + | chr6.4:61170032-61170051 | MS.gene059590:CDS | 45.0% | |
GATGTGAAATTCGGAGGAAG+TGG | + | chr6.4:61171514-61171533 | MS.gene059590:CDS | 45.0% | |
GCATCACTCCAGGTATTTGA+GGG | - | chr6.4:61170746-61170765 | None:intergenic | 45.0% | |
GCATGACGAACAAAATCCTC+AGG | - | chr6.4:61171667-61171686 | None:intergenic | 45.0% | |
GGAGCTCAATCTGTGAGTAA+TGG | + | chr6.4:61170798-61170817 | MS.gene059590:CDS | 45.0% | |
GGTAAATCTCTTCTGCCCAT+TGG | - | chr6.4:61170595-61170614 | None:intergenic | 45.0% | |
GTATCCACCACAAGCTCAAA+TGG | + | chr6.4:61171559-61171578 | MS.gene059590:CDS | 45.0% | |
GTTGGACAAGGATAGCTCAT+GGG | + | chr6.4:61170866-61170885 | MS.gene059590:CDS | 45.0% | |
TCACAACCTGAAGACGTGAA+AGG | + | chr6.4:61171394-61171413 | MS.gene059590:CDS | 45.0% | |
TCAGCTTCCTATGTTGGACA+AGG | + | chr6.4:61170854-61170873 | MS.gene059590:CDS | 45.0% | |
TGCATCACTCCAGGTATTTG+AGG | - | chr6.4:61170747-61170766 | None:intergenic | 45.0% | |
TGGATACCCAAGGCAGATTT+GGG | - | chr6.4:61171546-61171565 | None:intergenic | 45.0% | |
TGTCCTTCCATTTGAGCTTG+TGG | - | chr6.4:61171569-61171588 | None:intergenic | 45.0% | |
TGTTGGACAAGGATAGCTCA+TGG | + | chr6.4:61170865-61170884 | MS.gene059590:CDS | 45.0% | |
TTCCTACCCAAATCTGCCTT+GGG | + | chr6.4:61171537-61171556 | MS.gene059590:CDS | 45.0% | |
TTGGACAAGGATAGCTCATG+GGG | + | chr6.4:61170867-61170886 | MS.gene059590:CDS | 45.0% | |
TTGTGAAGAGGAGCCTTCTT+CGG | - | chr6.4:61171380-61171399 | None:intergenic | 45.0% | |
! | GACTCTTTTGCCGAAGTGTA+AGG | - | chr6.4:61170702-61170721 | None:intergenic | 45.0% |
! | TCACCTTTGGTTCGTTCTAG+CGG | - | chr6.4:61171340-61171359 | None:intergenic | 45.0% |
!! | TGATTCTGGCTTCTGAGGAT+CGG | - | chr6.4:61170124-61170143 | None:intergenic | 45.0% |
AAACAGCGTGTCACCGAAGA+AGG | + | chr6.4:61171364-61171383 | MS.gene059590:CDS | 50.0% | |
AAGCTGAGAACTCTACCTCC+AGG | + | chr6.4:61170472-61170491 | MS.gene059590:CDS | 50.0% | |
AAGGAAGCAGCACAAACCTC+AGG | + | chr6.4:61171413-61171432 | MS.gene059590:CDS | 50.0% | |
ACTCCAGGTATTTGAGGGCT+TGG | - | chr6.4:61170741-61170760 | None:intergenic | 50.0% | |
ACTGCGGATGTGAAATTCGG+AGG | + | chr6.4:61171508-61171527 | MS.gene059590:CDS | 50.0% | |
AGAATCGTCTGTGCGTGTCA+TGG | + | chr6.4:61171628-61171647 | MS.gene059590:CDS | 50.0% | |
AGGAAGCAGCACAAACCTCA+GGG | + | chr6.4:61171414-61171433 | MS.gene059590:CDS | 50.0% | |
AGGGGAGAAGAAAACGGTAG+AGG | + | chr6.4:61170060-61170079 | MS.gene059590:CDS | 50.0% | |
ATGGAAGCTCCTCGGATACT+AGG | + | chr6.4:61170040-61170059 | MS.gene059590:CDS | 50.0% | |
CAGAAGCCAGAATCAAGTGG+TGG | + | chr6.4:61170129-61170148 | MS.gene059590:CDS | 50.0% | |
CATTAAGCCAGGGCTTACTG+CGG | + | chr6.4:61171492-61171511 | MS.gene059590:CDS | 50.0% | |
CCACCACAAGCTCAAATGGA+AGG | + | chr6.4:61171563-61171582 | MS.gene059590:CDS | 50.0% | |
CCAGAACAGTCGAAAGGTGA+AGG | + | chr6.4:61171448-61171467 | MS.gene059590:CDS | 50.0% | |
CCATCACTATGGTTGGAGAG+AGG | - | chr6.4:61170498-61170517 | None:intergenic | 50.0% | |
CCTCAGAAGCCAGAATCAAG+TGG | + | chr6.4:61170126-61170145 | MS.gene059590:CDS | 50.0% | |
CCTCTCTCCAACCATAGTGA+TGG | + | chr6.4:61170495-61170514 | MS.gene059590:CDS | 50.0% | |
CCTTCACCTTTCGACTGTTC+TGG | - | chr6.4:61171451-61171470 | None:intergenic | 50.0% | |
CCTTCCATTTGAGCTTGTGG+TGG | - | chr6.4:61171566-61171585 | None:intergenic | 50.0% | |
CTGCTTCCTTTCACGTCTTC+AGG | - | chr6.4:61171403-61171422 | None:intergenic | 50.0% | |
GATGAGCGGACCTTACACTT+CGG | + | chr6.4:61170689-61170708 | MS.gene059590:CDS | 50.0% | |
GATGCACCAGAACAGTCGAA+AGG | + | chr6.4:61171442-61171461 | MS.gene059590:CDS | 50.0% | |
GATGCTTCGAAAGAGGTTCG+TGG | + | chr6.4:61170552-61170571 | MS.gene059590:CDS | 50.0% | |
GGAAGCTTGCCGATGATGTT+TGG | + | chr6.4:61170819-61170838 | MS.gene059590:CDS | 50.0% | |
GGAGAAGAAAACGGTAGAGG+TGG | + | chr6.4:61170063-61170082 | MS.gene059590:CDS | 50.0% | |
GGCATCATATGCATCACTCC+AGG | - | chr6.4:61170756-61170775 | None:intergenic | 50.0% | |
GTGGATACCCAAGGCAGATT+TGG | - | chr6.4:61171547-61171566 | None:intergenic | 50.0% | |
GTTCCTACCCAAATCTGCCT+TGG | + | chr6.4:61171536-61171555 | MS.gene059590:CDS | 50.0% | |
TACCCAAGGCAGATTTGGGT+AGG | - | chr6.4:61171542-61171561 | None:intergenic | 50.0% | |
TGGAAGCTCCTCGGATACTA+GGG | + | chr6.4:61170041-61170060 | MS.gene059590:CDS | 50.0% | |
TGGTTCTCACATGACTCCTG+AGG | + | chr6.4:61171648-61171667 | MS.gene059590:CDS | 50.0% | |
TTCTTCTCCCCTAGTATCCG+AGG | - | chr6.4:61170052-61170071 | None:intergenic | 50.0% | |
! | ACGCTGTTTCCCATCACCTT+TGG | - | chr6.4:61171353-61171372 | None:intergenic | 50.0% |
!! | CACGTCTTCAGGTTGTGAAG+AGG | - | chr6.4:61171392-61171411 | None:intergenic | 50.0% |
!! | CCACTTGATTCTGGCTTCTG+AGG | - | chr6.4:61170129-61170148 | None:intergenic | 50.0% |
!!! | GTTTTGGGAAGCTTGCCGAA+TGG | + | chr6.4:61171721-61171740 | MS.gene059590:CDS | 50.0% |
ACTACAACCGGTGAACGTGC+AGG | + | chr6.4:61170777-61170796 | MS.gene059590:CDS | 55.0% | |
ACTATGGTTGGAGAGAGGCC+TGG | - | chr6.4:61170493-61170512 | None:intergenic | 55.0% | |
AGGCCGCTAGAACGAACCAA+AGG | + | chr6.4:61171334-61171353 | MS.gene059590:CDS | 55.0% | |
CATCCTTCCTTTGCAGGGAG+AGG | + | chr6.4:61170906-61170925 | MS.gene059590:CDS | 55.0% | |
CTTGCGGCCATAATGCAGTC+AGG | - | chr6.4:61171066-61171085 | None:intergenic | 55.0% | |
GAAATTCTCCTCGGGCTTCG+AGG | - | chr6.4:61170172-61170191 | None:intergenic | 55.0% | |
GCACCAAGCCCTCAAATACC+TGG | + | chr6.4:61170735-61170754 | MS.gene059590:CDS | 55.0% | |
GCTTCGAGGAATCAGCCCTT+CGG | - | chr6.4:61170158-61170177 | None:intergenic | 55.0% | |
GGAAGCAGCACAAACCTCAG+GGG | + | chr6.4:61171415-61171434 | MS.gene059590:CDS | 55.0% | |
GGAAGCTCCTCGGATACTAG+GGG | + | chr6.4:61170042-61170061 | MS.gene059590:CDS | 55.0% | |
TCTAGCGGCCTGCCTTCATA+CGG | - | chr6.4:61171325-61171344 | None:intergenic | 55.0% | |
TTCACATCCGCAGTAAGCCC+TGG | - | chr6.4:61171502-61171521 | None:intergenic | 55.0% | |
TTGAGCTCCTGCACGTTCAC+CGG | - | chr6.4:61170787-61170806 | None:intergenic | 55.0% | |
! | AATCAAGTGGTGGGAGCCGA+AGG | + | chr6.4:61170139-61170158 | MS.gene059590:CDS | 55.0% |
! | AGCGGGCTTGAGCTCAGTTT+GGG | + | chr6.4:61169976-61169995 | MS.gene059590:CDS | 55.0% |
! | ATCAAGTGGTGGGAGCCGAA+GGG | + | chr6.4:61170140-61170159 | MS.gene059590:CDS | 55.0% |
! | GCACGTTCACCGGTTGTAGT+TGG | - | chr6.4:61170777-61170796 | None:intergenic | 55.0% |
!! | GAGCTTGTGGTGGATACCCA+AGG | - | chr6.4:61171556-61171575 | None:intergenic | 55.0% |
!! | TAGCGGGCTTGAGCTCAGTT+TGG | + | chr6.4:61169975-61169994 | MS.gene059590:CDS | 55.0% |
!! | TCGCTGACTCAAGCGCCAAT+GGG | + | chr6.4:61170577-61170596 | MS.gene059590:CDS | 55.0% |
AGGCCATGCCGTATGAAGGC+AGG | + | chr6.4:61171314-61171333 | MS.gene059590:CDS | 60.0% | |
ATGGTTGGAGAGAGGCCTGG+AGG | - | chr6.4:61170490-61170509 | None:intergenic | 60.0% | |
CGGCTCCCACCACTTGATTC+TGG | - | chr6.4:61170138-61170157 | None:intergenic | 60.0% | |
CTGGTGCATCTTTGCCCCTG+AGG | - | chr6.4:61171432-61171451 | None:intergenic | 60.0% | |
GCCTTCATACGGCATGGCCT+CGG | - | chr6.4:61171314-61171333 | None:intergenic | 60.0% | |
TCCGAGGCCATGCCGTATGA+AGG | + | chr6.4:61171310-61171329 | MS.gene059590:CDS | 60.0% | |
!! | GTCGCTGACTCAAGCGCCAA+TGG | + | chr6.4:61170576-61170595 | MS.gene059590:CDS | 60.0% |
AGCTGGGCCTCTCCCTGCAA+AGG | - | chr6.4:61170916-61170935 | None:intergenic | 65.0% | |
CGGCCTGCCTTCATACGGCA+TGG | - | chr6.4:61171320-61171339 | None:intergenic | 65.0% | |
GGGAGAGGCCCAGCTAACTC+AGG | + | chr6.4:61170921-61170940 | MS.gene059590:CDS | 65.0% | |
GGGCCTCTCCCTGCAAAGGA+AGG | - | chr6.4:61170912-61170931 | None:intergenic | 65.0% | |
! | GGCTGATTCCTCGAAGCCCG+AGG | + | chr6.4:61170161-61170180 | MS.gene059590:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.4 | gene | 61169964 | 61171771 | 61169964 | ID=MS.gene059590 |
chr6.4 | mRNA | 61169964 | 61171771 | 61169964 | ID=MS.gene059590.t1;Parent=MS.gene059590 |
chr6.4 | exon | 61169964 | 61170942 | 61169964 | ID=MS.gene059590.t1.exon1;Parent=MS.gene059590.t1 |
chr6.4 | CDS | 61169964 | 61170942 | 61169964 | ID=cds.MS.gene059590.t1;Parent=MS.gene059590.t1 |
chr6.4 | exon | 61171287 | 61171771 | 61171287 | ID=MS.gene059590.t1.exon2;Parent=MS.gene059590.t1 |
chr6.4 | CDS | 61171287 | 61171771 | 61171287 | ID=cds.MS.gene059590.t1;Parent=MS.gene059590.t1 |
Gene Sequence |
Protein sequence |