Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87205.t1 | XP_024628675.1 | 96.4 | 411 | 15 | 0 | 1 | 411 | 1 | 411 | 4.20E-227 | 797 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87205.t1 | Q8L518 | 66.7 | 342 | 111 | 2 | 21 | 362 | 7 | 345 | 9.5e-135 | 481.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87205.t1 | G7LIC4 | 95.9 | 411 | 15 | 1 | 1 | 411 | 1 | 409 | 1.1e-224 | 788.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene57514 | MS.gene87205 | PPI |
| MS.gene83346 | MS.gene87205 | PPI |
| MS.gene067354 | MS.gene87205 | PPI |
| MS.gene019492 | MS.gene87205 | PPI |
| MS.gene42220 | MS.gene87205 | PPI |
| MS.gene27633 | MS.gene87205 | PPI |
| MS.gene038844 | MS.gene87205 | PPI |
| MS.gene045848 | MS.gene87205 | PPI |
| MS.gene52160 | MS.gene87205 | PPI |
| MS.gene50958 | MS.gene87205 | PPI |
| MS.gene58299 | MS.gene87205 | PPI |
| MS.gene36871 | MS.gene87205 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87205.t1 | MTR_8g041330 | 95.864 | 411 | 15 | 1 | 1 | 411 | 1 | 409 | 0.0 | 810 |
| MS.gene87205.t1 | MTR_3g013430 | 72.704 | 392 | 102 | 2 | 19 | 410 | 113 | 499 | 0.0 | 590 |
| MS.gene87205.t1 | MTR_6g039820 | 61.585 | 328 | 125 | 1 | 36 | 362 | 16 | 343 | 1.02e-153 | 438 |
| MS.gene87205.t1 | MTR_1g097850 | 62.691 | 327 | 107 | 2 | 36 | 361 | 16 | 328 | 1.06e-153 | 438 |
| MS.gene87205.t1 | MTR_1g097850 | 61.694 | 248 | 80 | 2 | 36 | 282 | 16 | 249 | 2.26e-109 | 322 |
| MS.gene87205.t1 | MTR_6g040230 | 64.889 | 225 | 79 | 0 | 138 | 362 | 272 | 496 | 3.18e-105 | 320 |
| MS.gene87205.t1 | MTR_2g054370 | 34.451 | 328 | 200 | 6 | 41 | 362 | 48 | 366 | 2.05e-55 | 187 |
| MS.gene87205.t1 | MTR_8g041220 | 90.323 | 93 | 8 | 1 | 257 | 349 | 40 | 131 | 3.78e-53 | 174 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87205.t1 | AT1G74320 | 67.781 | 329 | 106 | 0 | 34 | 362 | 17 | 345 | 7.28e-174 | 489 |
| MS.gene87205.t1 | AT1G71697 | 62.006 | 329 | 123 | 2 | 35 | 361 | 16 | 344 | 1.47e-154 | 440 |
| MS.gene87205.t1 | AT4G09760 | 60.303 | 330 | 128 | 3 | 35 | 362 | 14 | 342 | 4.69e-152 | 434 |
| MS.gene87205.t1 | AT4G09760 | 60.303 | 330 | 128 | 3 | 35 | 362 | 14 | 342 | 4.69e-152 | 434 |
| MS.gene87205.t1 | AT4G09760 | 54.976 | 211 | 92 | 3 | 35 | 243 | 14 | 223 | 3.33e-81 | 250 |
| MS.gene87205.t1 | AT4G09760 | 53.571 | 196 | 88 | 3 | 35 | 228 | 14 | 208 | 2.90e-72 | 226 |
| MS.gene87205.t1 | AT2G26830 | 35.692 | 325 | 192 | 7 | 40 | 357 | 45 | 359 | 9.68e-56 | 188 |
Find 77 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGAAGTTATTCCTCTTAA+AGG | 0.171522 | 8.4:+58203379 | MS.gene87205:CDS |
| CACTTGCAAGTCATCTATTA+TGG | 0.172079 | 8.4:+58205386 | MS.gene87205:CDS |
| TGAAATCATTAGCAAATAAA+TGG | 0.176333 | 8.4:+58203332 | MS.gene87205:CDS |
| ATCATGGAACTCCTTCATTT+TGG | 0.209327 | 8.4:-58204340 | None:intergenic |
| GGACAAAGAAATCTCTCTTT+TGG | 0.232703 | 8.4:+58204595 | MS.gene87205:CDS |
| TTCCCAAAGGTACACATTCT+TGG | 0.254559 | 8.4:-58204379 | None:intergenic |
| ATGAGGTATTCCAGATAAAA+TGG | 0.287632 | 8.4:+58203413 | MS.gene87205:CDS |
| TCATCTATTATGGGGCCTTT+GGG | 0.289010 | 8.4:+58205396 | MS.gene87205:CDS |
| TGCCACAATGATTTACAATA+TGG | 0.290864 | 8.4:+58204656 | MS.gene87205:CDS |
| GTCATCTATTATGGGGCCTT+TGG | 0.310788 | 8.4:+58205395 | MS.gene87205:CDS |
| AAGGTTCTTGTTAGAATCTA+TGG | 0.326658 | 8.4:+58203463 | MS.gene87205:CDS |
| TGAAACATCTCAACTTCTTC+AGG | 0.330533 | 8.4:-58204560 | None:intergenic |
| TGGAAGTTATTCCTCTTAAA+GGG | 0.343200 | 8.4:+58203380 | MS.gene87205:CDS |
| GGGCCTTTGGGGAATCGTTT+CGG | 0.345679 | 8.4:+58205408 | MS.gene87205:CDS |
| TCCCATCATAATGTTATTGC+TGG | 0.356929 | 8.4:+58205659 | MS.gene87205:CDS |
| GTTCCAAGAATGTGTACCTT+TGG | 0.367660 | 8.4:+58204376 | MS.gene87205:CDS |
| TAAAGAGAAACTCACTATTA+TGG | 0.376517 | 8.4:-58204714 | None:intergenic |
| TGTACCTTTGGGAAAGATTA+CGG | 0.391573 | 8.4:+58204388 | MS.gene87205:CDS |
| AATAGATGGATCACGCATAT+CGG | 0.394900 | 8.4:-58204301 | None:intergenic |
| TTCCAAGAATGTGTACCTTT+GGG | 0.404242 | 8.4:+58204377 | MS.gene87205:CDS |
| ACTTGCAAGTCATCTATTAT+GGG | 0.413096 | 8.4:+58205387 | MS.gene87205:CDS |
| CAGACATATTTGAGTTCATC+AGG | 0.413968 | 8.4:+58205087 | MS.gene87205:CDS |
| TTATGATGGGAAGATCCATT+AGG | 0.422345 | 8.4:-58205647 | None:intergenic |
| GTCAAGAATATGTGGAGTTT+CGG | 0.423578 | 8.4:-58204937 | None:intergenic |
| TATGATGGGAAGATCCATTA+GGG | 0.447142 | 8.4:-58205646 | None:intergenic |
| TTCCATGATCTTGACATGCC+TGG | 0.449549 | 8.4:+58204354 | MS.gene87205:CDS |
| CATAATGTTATTGCTGGTAA+TGG | 0.449901 | 8.4:+58205665 | MS.gene87205:CDS |
| GCTTCTCTTGATAGATTTGG+AGG | 0.453437 | 8.4:+58205047 | MS.gene87205:intron |
| TTTGCTATATCATATGCAAC+TGG | 0.459381 | 8.4:-58204882 | None:intergenic |
| GCTATAAGAGCAGAAATAGA+TGG | 0.462638 | 8.4:-58204315 | None:intergenic |
| AAATAAATGGGAAAATGTAT+TGG | 0.463368 | 8.4:+58203345 | MS.gene87205:CDS |
| TTGCGCGGATGAACTCTTCA+AGG | 0.464612 | 8.4:-58203594 | None:intergenic |
| TACCAGCAATAACATTATGA+TGG | 0.466699 | 8.4:-58205661 | None:intergenic |
| TTGGTCATTGCCCCTTTAAG+AGG | 0.472910 | 8.4:-58203391 | None:intergenic |
| AGGGACCTCGTTTGCTAGGA+AGG | 0.472952 | 8.4:+58203557 | MS.gene87205:CDS |
| GAAATCATTAGCAAATAAAT+GGG | 0.476701 | 8.4:+58203333 | MS.gene87205:CDS |
| AACAAAGGTTTCAAGAGTAC+TGG | 0.478778 | 8.4:+58205600 | MS.gene87205:CDS |
| TTCGCATTCATCTCAAAGAA+TGG | 0.478784 | 8.4:+58203532 | MS.gene87205:CDS |
| CGGTAACTCCTCAACGCATA+GGG | 0.494288 | 8.4:+58204630 | MS.gene87205:CDS |
| ATAGATGGATCACGCATATC+GGG | 0.505512 | 8.4:-58204300 | None:intergenic |
| GGACAGGGACCTCGTTTGCT+AGG | 0.522828 | 8.4:+58203553 | MS.gene87205:CDS |
| TTACTATAGTCAAGAATATG+TGG | 0.524731 | 8.4:-58204945 | None:intergenic |
| ATTCATCTCAAAGAATGGAC+AGG | 0.529382 | 8.4:+58203537 | MS.gene87205:CDS |
| CAAAGAGCCCTCGTATCTCC+AGG | 0.530556 | 8.4:+58205844 | MS.gene87205:CDS |
| AGAAGGTGAAATGTCAAGAA+AGG | 0.537124 | 8.4:+58203444 | MS.gene87205:CDS |
| AACCAGGCATGTCAAGATCA+TGG | 0.540337 | 8.4:-58204356 | None:intergenic |
| TTGCAGCCATCTCAGAGAAG+TGG | 0.546892 | 8.4:-58204905 | None:intergenic |
| TCGGTAACTCCTCAACGCAT+AGG | 0.548774 | 8.4:+58204629 | MS.gene87205:CDS |
| CTTGTTAGAATCTATGGTGA+AGG | 0.550047 | 8.4:+58203469 | MS.gene87205:CDS |
| TCTTATAGCCTCCAAAATGA+AGG | 0.550643 | 8.4:+58204329 | MS.gene87205:CDS |
| CATCTATTATGGGGCCTTTG+GGG | 0.556158 | 8.4:+58205397 | MS.gene87205:CDS |
| AGCAAACCACTTCTCTGAGA+TGG | 0.561547 | 8.4:+58204899 | MS.gene87205:CDS |
| ATAAAATGGCAAACAACAGA+AGG | 0.566959 | 8.4:+58203427 | MS.gene87205:CDS |
| TGCTGCACTTCATTATCACT+AGG | 0.567718 | 8.4:-58205337 | None:intergenic |
| TGTATTGGATGCAAATGCGT+TGG | 0.569064 | 8.4:+58203360 | MS.gene87205:CDS |
| TTGCTAGGAAGGTTTGCTCA+AGG | 0.570025 | 8.4:+58203568 | MS.gene87205:CDS |
| GATGTTTCATTTGAACACAA+TGG | 0.571971 | 8.4:+58204574 | MS.gene87205:CDS |
| ACCAGCAATAACATTATGAT+GGG | 0.574788 | 8.4:-58205660 | None:intergenic |
| TTGAAGAGTTCATCCGCGCA+AGG | 0.578128 | 8.4:+58203596 | MS.gene87205:CDS |
| CTTGACTATAGTAAATATCC+CGG | 0.580938 | 8.4:+58204954 | MS.gene87205:CDS |
| AGGTACACATTCTTGGAACC+AGG | 0.595752 | 8.4:-58204372 | None:intergenic |
| GAAATTGGCTTATTGAAGCG+AGG | 0.601212 | 8.4:+58204525 | MS.gene87205:intron |
| TTCAACTTCCTGGAGATACG+AGG | 0.606784 | 8.4:-58205852 | None:intergenic |
| TACCATATTGTAAATCATTG+TGG | 0.610437 | 8.4:-58204658 | None:intergenic |
| GGAAGTTATTCCTCTTAAAG+GGG | 0.616043 | 8.4:+58203381 | MS.gene87205:CDS |
| GGTTTCAAGAGTACTGGTCA+AGG | 0.622972 | 8.4:+58205606 | MS.gene87205:CDS |
| TGAAGAGTTCATCCGCGCAA+GGG | 0.628101 | 8.4:+58203597 | MS.gene87205:CDS |
| TCAACTTCCTGGAGATACGA+GGG | 0.628722 | 8.4:-58205851 | None:intergenic |
| TGGCAAAACCCTATGCGTTG+AGG | 0.633836 | 8.4:-58204638 | None:intergenic |
| TTCATCTCAAAGAATGGACA+GGG | 0.638399 | 8.4:+58203538 | MS.gene87205:CDS |
| ACAAGGAGTATGCAAAACAA+AGG | 0.657049 | 8.4:+58205585 | MS.gene87205:CDS |
| TAAAGGGGCAATGACCAATG+AGG | 0.662217 | 8.4:+58203396 | MS.gene87205:CDS |
| CTTGCAAGTCATCTATTATG+GGG | 0.663040 | 8.4:+58205388 | MS.gene87205:CDS |
| ATACCGAAACGATTCCCCAA+AGG | 0.667454 | 8.4:-58205411 | None:intergenic |
| CATACCGTAATCTTTCCCAA+AGG | 0.702589 | 8.4:-58204392 | None:intergenic |
| AAGGCAATACTACCCTTGCG+CGG | 0.704621 | 8.4:-58203609 | None:intergenic |
| GCAAACCTTCCTAGCAAACG+AGG | 0.716835 | 8.4:-58203562 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACATAAAATTTTATATGAA+TGG | - | chr8.4:58204496-58204515 | None:intergenic | 10.0% |
| !!! | TATTAAAATTTTACTTTGAA+AGG | + | chr8.4:58204095-58204114 | MS.gene87205:intron | 10.0% |
| !!! | TTTCAAAGTAAAATTTTAAT+AGG | - | chr8.4:58204096-58204115 | None:intergenic | 10.0% |
| !!! | ACATAAAAGTAATTTTTGAA+TGG | - | chr8.4:58205023-58205042 | None:intergenic | 15.0% |
| !!! | AGTAAAATTTTAATAGGTTA+TGG | - | chr8.4:58204090-58204109 | None:intergenic | 15.0% |
| !!! | AGTACATTTTTAAAGTTTTA+AGG | - | chr8.4:58203997-58204016 | None:intergenic | 15.0% |
| !!! | ATAAAAGTAATTTTTGAATG+GGG | - | chr8.4:58205021-58205040 | None:intergenic | 15.0% |
| !!! | CATAAAAGTAATTTTTGAAT+GGG | - | chr8.4:58205022-58205041 | None:intergenic | 15.0% |
| !! | AAATAAATGGGAAAATGTAT+TGG | + | chr8.4:58203345-58203364 | MS.gene87205:CDS | 20.0% |
| !! | AACAATAAAATACTGATACA+TGG | + | chr8.4:58205214-58205233 | MS.gene87205:intron | 20.0% |
| !! | ACAATAACAATATTCTCAAA+AGG | - | chr8.4:58203677-58203696 | None:intergenic | 20.0% |
| !! | ATTTCATTCTAAATCATGTT+TGG | - | chr8.4:58203795-58203814 | None:intergenic | 20.0% |
| !! | GAAATCATTAGCAAATAAAT+GGG | + | chr8.4:58203333-58203352 | MS.gene87205:CDS | 20.0% |
| !! | TAAAAAGAGAAAGTTTATCT+TGG | + | chr8.4:58203954-58203973 | MS.gene87205:intron | 20.0% |
| !! | TATGTTAATGATTCAGAAAT+TGG | + | chr8.4:58204510-58204529 | MS.gene87205:intron | 20.0% |
| !! | TGAAATCATTAGCAAATAAA+TGG | + | chr8.4:58203332-58203351 | MS.gene87205:CDS | 20.0% |
| !! | TGAACAAACAATGAAAAAAA+AGG | - | chr8.4:58203631-58203650 | None:intergenic | 20.0% |
| !! | TGTTAAAAGATTATGTTACA+TGG | + | chr8.4:58205129-58205148 | MS.gene87205:intron | 20.0% |
| !!! | ATCTATGCAAAGTTTTATTT+TGG | - | chr8.4:58203763-58203782 | None:intergenic | 20.0% |
| !!! | CAAAAATGTACTTTTGTAAT+AGG | + | chr8.4:58204797-58204816 | MS.gene87205:intron | 20.0% |
| !!! | CAATAATTGTCATATTTTGT+TGG | - | chr8.4:58205712-58205731 | None:intergenic | 20.0% |
| ! | AAAAAATTTCTTCAACTTCC+TGG | - | chr8.4:58205865-58205884 | None:intergenic | 25.0% |
| ! | CCTATGTTCAAAATATATGA+AGG | - | chr8.4:58205477-58205496 | None:intergenic | 25.0% |
| ! | GTTCAAAATATATGAAGGTT+AGG | - | chr8.4:58205472-58205491 | None:intergenic | 25.0% |
| ! | TAAAGAGAAACTCACTATTA+TGG | - | chr8.4:58204717-58204736 | None:intergenic | 25.0% |
| ! | TACCATATTGTAAATCATTG+TGG | - | chr8.4:58204661-58204680 | None:intergenic | 25.0% |
| ! | TAGTTTAGATAAGACAATAG+AGG | - | chr8.4:58205516-58205535 | None:intergenic | 25.0% |
| ! | TTACTATAGTCAAGAATATG+TGG | - | chr8.4:58204948-58204967 | None:intergenic | 25.0% |
| !! | ATTATTGTTATTGTCAGACT+TGG | + | chr8.4:58203709-58203728 | MS.gene87205:intron | 25.0% |
| !! | TACTGACATTTTCTTTGATA+GGG | + | chr8.4:58203492-58203511 | MS.gene87205:CDS | 25.0% |
| !!! | AGGAAGTTGAAGAAATTTTT+TGG | + | chr8.4:58205864-58205883 | MS.gene87205:CDS | 25.0% |
| !!! | ATTTTCACTTTTAAGCACAA+TGG | - | chr8.4:58204775-58204794 | None:intergenic | 25.0% |
| !!! | CAAAATTGATTTTGACTACA+AGG | + | chr8.4:58205568-58205587 | MS.gene87205:CDS | 25.0% |
| !!! | CCTTCATATATTTTGAACAT+AGG | + | chr8.4:58205474-58205493 | MS.gene87205:intron | 25.0% |
| !!! | TTGAAGAAATTTTTTGGTCT+TGG | + | chr8.4:58205870-58205889 | MS.gene87205:CDS | 25.0% |
| AAGGTTCTTGTTAGAATCTA+TGG | + | chr8.4:58203463-58203482 | MS.gene87205:CDS | 30.0% | |
| ACCAGCAATAACATTATGAT+GGG | - | chr8.4:58205663-58205682 | None:intergenic | 30.0% | |
| ACTTGCAAGTCATCTATTAT+GGG | + | chr8.4:58205387-58205406 | MS.gene87205:CDS | 30.0% | |
| ATAAAATGGCAAACAACAGA+AGG | + | chr8.4:58203427-58203446 | MS.gene87205:CDS | 30.0% | |
| ATCTTCACAATACATTGTTC+AGG | + | chr8.4:58205535-58205554 | MS.gene87205:intron | 30.0% | |
| CAATATTCTCAAAAGGCTTT+AGG | - | chr8.4:58203670-58203689 | None:intergenic | 30.0% | |
| CATAATGTTATTGCTGGTAA+TGG | + | chr8.4:58205665-58205684 | MS.gene87205:CDS | 30.0% | |
| CTTGACTATAGTAAATATCC+CGG | + | chr8.4:58204954-58204973 | MS.gene87205:CDS | 30.0% | |
| GATGTTTCATTTGAACACAA+TGG | + | chr8.4:58204574-58204593 | MS.gene87205:CDS | 30.0% | |
| TACCAGCAATAACATTATGA+TGG | - | chr8.4:58205664-58205683 | None:intergenic | 30.0% | |
| TGCCACAATGATTTACAATA+TGG | + | chr8.4:58204656-58204675 | MS.gene87205:CDS | 30.0% | |
| TGGAAGTTATTCCTCTTAAA+GGG | + | chr8.4:58203380-58203399 | MS.gene87205:CDS | 30.0% | |
| TTCTAAATCATGTTTGGCAA+AGG | - | chr8.4:58203789-58203808 | None:intergenic | 30.0% | |
| TTCTCACATTTCTTGTTAAG+CGG | - | chr8.4:58204433-58204452 | None:intergenic | 30.0% | |
| TTGGAAGTTATTCCTCTTAA+AGG | + | chr8.4:58203379-58203398 | MS.gene87205:CDS | 30.0% | |
| ! | AAATGTTAGCAAGTGCTATT+AGG | + | chr8.4:58203915-58203934 | MS.gene87205:intron | 30.0% |
| ! | AATATCTCTTTTGCTTCATC+TGG | - | chr8.4:58203313-58203332 | None:intergenic | 30.0% |
| ! | AATGTTAGCAAGTGCTATTA+GGG | + | chr8.4:58203916-58203935 | MS.gene87205:intron | 30.0% |
| ! | ACTATTTTATAATTGCCCTC+GGG | + | chr8.4:58203883-58203902 | MS.gene87205:intron | 30.0% |
| ! | ATGAGGTATTCCAGATAAAA+TGG | + | chr8.4:58203413-58203432 | MS.gene87205:CDS | 30.0% |
| ! | GACTATTTTATAATTGCCCT+CGG | + | chr8.4:58203882-58203901 | MS.gene87205:intron | 30.0% |
| ! | TGTTCTTATCATTGAGTTGT+TGG | + | chr8.4:58205294-58205313 | MS.gene87205:intron | 30.0% |
| ! | TTTGCTATATCATATGCAAC+TGG | - | chr8.4:58204885-58204904 | None:intergenic | 30.0% |
| !! | AGAAATCTCTCTTTTGGAAA+AGG | + | chr8.4:58204601-58204620 | MS.gene87205:CDS | 30.0% |
| !! | GTACTGACATTTTCTTTGAT+AGG | + | chr8.4:58203491-58203510 | MS.gene87205:CDS | 30.0% |
| !! | TCTTTTGGAAAAGGAATTGT+CGG | + | chr8.4:58204610-58204629 | MS.gene87205:CDS | 30.0% |
| !! | TGGTTGGTGAATTGAAATTT+AGG | + | chr8.4:58203729-58203748 | MS.gene87205:intron | 30.0% |
| !! | TTTTATCTGGAATACCTCAT+TGG | - | chr8.4:58203413-58203432 | None:intergenic | 30.0% |
| !!! | TGATTTTTTATCGACGATTG+AGG | - | chr8.4:58205823-58205842 | None:intergenic | 30.0% |
| AATAGATGGATCACGCATAT+CGG | - | chr8.4:58204304-58204323 | None:intergenic | 35.0% | |
| AGAAGGTGAAATGTCAAGAA+AGG | + | chr8.4:58203444-58203463 | MS.gene87205:CDS | 35.0% | |
| AGGAACCAATATGAGGTAAA+CGG | - | chr8.4:58205764-58205783 | None:intergenic | 35.0% | |
| ATTCATCTCAAAGAATGGAC+AGG | + | chr8.4:58203537-58203556 | MS.gene87205:CDS | 35.0% | |
| CACTTGCAAGTCATCTATTA+TGG | + | chr8.4:58205386-58205405 | MS.gene87205:CDS | 35.0% | |
| CTTGCAAGTCATCTATTATG+GGG | + | chr8.4:58205388-58205407 | MS.gene87205:CDS | 35.0% | |
| CTTGTTAGAATCTATGGTGA+AGG | + | chr8.4:58203469-58203488 | MS.gene87205:CDS | 35.0% | |
| GCTATAAGAGCAGAAATAGA+TGG | - | chr8.4:58204318-58204337 | None:intergenic | 35.0% | |
| GGAAGTTATTCCTCTTAAAG+GGG | + | chr8.4:58203381-58203400 | MS.gene87205:CDS | 35.0% | |
| GTCAAGAATATGTGGAGTTT+CGG | - | chr8.4:58204940-58204959 | None:intergenic | 35.0% | |
| TAGACTTAGGAACCAATATG+AGG | - | chr8.4:58205771-58205790 | None:intergenic | 35.0% | |
| TATGGTAACAAGTGTCCTTA+CGG | - | chr8.4:58204072-58204091 | None:intergenic | 35.0% | |
| TCCCATCATAATGTTATTGC+TGG | + | chr8.4:58205659-58205678 | MS.gene87205:CDS | 35.0% | |
| TCTGCTTCTCTTGATAGATT+TGG | + | chr8.4:58205044-58205063 | MS.gene87205:intron | 35.0% | |
| TCTTATAGCCTCCAAAATGA+AGG | + | chr8.4:58204329-58204348 | MS.gene87205:CDS | 35.0% | |
| TGAAACATCTCAACTTCTTC+AGG | - | chr8.4:58204563-58204582 | None:intergenic | 35.0% | |
| TGATTCCGTTTACCTCATAT+TGG | + | chr8.4:58205756-58205775 | MS.gene87205:intron | 35.0% | |
| TTCATCTCAAAGAATGGACA+GGG | + | chr8.4:58203538-58203557 | MS.gene87205:CDS | 35.0% | |
| TTCCAAGAATGTGTACCTTT+GGG | + | chr8.4:58204377-58204396 | MS.gene87205:CDS | 35.0% | |
| TTCGCATTCATCTCAAAGAA+TGG | + | chr8.4:58203532-58203551 | MS.gene87205:CDS | 35.0% | |
| ! | AACAAAGGTTTCAAGAGTAC+TGG | + | chr8.4:58205600-58205619 | MS.gene87205:CDS | 35.0% |
| ! | AATCATCTTTTGAGCCCTAA+TGG | + | chr8.4:58205632-58205651 | MS.gene87205:CDS | 35.0% |
| ! | ACAAGGAGTATGCAAAACAA+AGG | + | chr8.4:58205585-58205604 | MS.gene87205:CDS | 35.0% |
| ! | ATCATGGAACTCCTTCATTT+TGG | - | chr8.4:58204343-58204362 | None:intergenic | 35.0% |
| ! | CAGACATATTTGAGTTCATC+AGG | + | chr8.4:58205087-58205106 | MS.gene87205:CDS | 35.0% |
| ! | GGACAAAGAAATCTCTCTTT+TGG | + | chr8.4:58204595-58204614 | MS.gene87205:CDS | 35.0% |
| ! | TATGATGGGAAGATCCATTA+GGG | - | chr8.4:58205649-58205668 | None:intergenic | 35.0% |
| ! | TGTACCTTTGGGAAAGATTA+CGG | + | chr8.4:58204388-58204407 | MS.gene87205:CDS | 35.0% |
| ! | TTATGATGGGAAGATCCATT+AGG | - | chr8.4:58205650-58205669 | None:intergenic | 35.0% |
| ! | TTGTTATTGTCAGACTTGGT+TGG | + | chr8.4:58203713-58203732 | MS.gene87205:intron | 35.0% |
| !! | AAGTCTAAAACTGACTTGCA+GGG | + | chr8.4:58205784-58205803 | MS.gene87205:intron | 35.0% |
| !! | TAAGTCTAAAACTGACTTGC+AGG | + | chr8.4:58205783-58205802 | MS.gene87205:intron | 35.0% |
| !!! | CTGTTGTTTGCCATTTTATC+TGG | - | chr8.4:58203426-58203445 | None:intergenic | 35.0% |
| !!! | TGCAAGTCAGTTTTAGACTT+AGG | - | chr8.4:58205784-58205803 | None:intergenic | 35.0% |
| ATAATTGCCCTCGGGAAAAT+TGG | + | chr8.4:58203891-58203910 | MS.gene87205:intron | 40.0% | |
| ATAGATGGATCACGCATATC+GGG | - | chr8.4:58204303-58204322 | None:intergenic | 40.0% | |
| CATACCGTAATCTTTCCCAA+AGG | - | chr8.4:58204395-58204414 | None:intergenic | 40.0% | |
| CGTTCTTAACTAATGCCGTA+AGG | + | chr8.4:58204054-58204073 | MS.gene87205:intron | 40.0% | |
| GCTTCTCTTGATAGATTTGG+AGG | + | chr8.4:58205047-58205066 | MS.gene87205:intron | 40.0% | |
| GTTCCAAGAATGTGTACCTT+TGG | + | chr8.4:58204376-58204395 | MS.gene87205:CDS | 40.0% | |
| TAATTGCCCTCGGGAAAATT+GGG | + | chr8.4:58203892-58203911 | MS.gene87205:intron | 40.0% | |
| TCATCTATTATGGGGCCTTT+GGG | + | chr8.4:58205396-58205415 | MS.gene87205:CDS | 40.0% | |
| TGAGAAGTTTGACTGCATAC+CGG | - | chr8.4:58204976-58204995 | None:intergenic | 40.0% | |
| TGCTGCACTTCATTATCACT+AGG | - | chr8.4:58205340-58205359 | None:intergenic | 40.0% | |
| TGTATTGGATGCAAATGCGT+TGG | + | chr8.4:58203360-58203379 | MS.gene87205:CDS | 40.0% | |
| ! | AACATTTCCCAATTTTCCCG+AGG | - | chr8.4:58203902-58203921 | None:intergenic | 40.0% |
| ! | ACATTTCCCAATTTTCCCGA+GGG | - | chr8.4:58203901-58203920 | None:intergenic | 40.0% |
| ! | ATGGAACTCCTTCATTTTGG+AGG | - | chr8.4:58204340-58204359 | None:intergenic | 40.0% |
| ! | GAAATTGGCTTATTGAAGCG+AGG | + | chr8.4:58204525-58204544 | MS.gene87205:intron | 40.0% |
| ! | TTCCCAAAGGTACACATTCT+TGG | - | chr8.4:58204382-58204401 | None:intergenic | 40.0% |
| !! | AGTCTAAAACTGACTTGCAG+GGG | + | chr8.4:58205785-58205804 | MS.gene87205:intron | 40.0% |
| !!! | GAGTTGTTGGTTTTGAACTC+AGG | + | chr8.4:58205307-58205326 | MS.gene87205:intron | 40.0% |
| AACCAGGCATGTCAAGATCA+TGG | - | chr8.4:58204359-58204378 | None:intergenic | 45.0% | |
| AGGTACACATTCTTGGAACC+AGG | - | chr8.4:58204375-58204394 | None:intergenic | 45.0% | |
| ATACCGAAACGATTCCCCAA+AGG | - | chr8.4:58205414-58205433 | None:intergenic | 45.0% | |
| CATCTATTATGGGGCCTTTG+GGG | + | chr8.4:58205397-58205416 | MS.gene87205:CDS | 45.0% | |
| GAGAAGTTTGACTGCATACC+GGG | - | chr8.4:58204975-58204994 | None:intergenic | 45.0% | |
| GTCATCTATTATGGGGCCTT+TGG | + | chr8.4:58205395-58205414 | MS.gene87205:CDS | 45.0% | |
| TAAAGGGGCAATGACCAATG+AGG | + | chr8.4:58203396-58203415 | MS.gene87205:CDS | 45.0% | |
| TCAACTTCCTGGAGATACGA+GGG | - | chr8.4:58205854-58205873 | None:intergenic | 45.0% | |
| TTCAACTTCCTGGAGATACG+AGG | - | chr8.4:58205855-58205874 | None:intergenic | 45.0% | |
| TTCCATGATCTTGACATGCC+TGG | + | chr8.4:58204354-58204373 | MS.gene87205:CDS | 45.0% | |
| TTGGTCATTGCCCCTTTAAG+AGG | - | chr8.4:58203394-58203413 | None:intergenic | 45.0% | |
| ! | AGCAAACCACTTCTCTGAGA+TGG | + | chr8.4:58204899-58204918 | MS.gene87205:CDS | 45.0% |
| ! | TTGCTAGGAAGGTTTGCTCA+AGG | + | chr8.4:58203568-58203587 | MS.gene87205:CDS | 45.0% |
| !! | GGTTTCAAGAGTACTGGTCA+AGG | + | chr8.4:58205606-58205625 | MS.gene87205:CDS | 45.0% |
| AAGGCAATACTACCCTTGCG+CGG | - | chr8.4:58203612-58203631 | None:intergenic | 50.0% | |
| CGGTAACTCCTCAACGCATA+GGG | + | chr8.4:58204630-58204649 | MS.gene87205:CDS | 50.0% | |
| GCAAACCTTCCTAGCAAACG+AGG | - | chr8.4:58203565-58203584 | None:intergenic | 50.0% | |
| TCGGTAACTCCTCAACGCAT+AGG | + | chr8.4:58204629-58204648 | MS.gene87205:CDS | 50.0% | |
| TGAAGAGTTCATCCGCGCAA+GGG | + | chr8.4:58203597-58203616 | MS.gene87205:CDS | 50.0% | |
| TGGCAAAACCCTATGCGTTG+AGG | - | chr8.4:58204641-58204660 | None:intergenic | 50.0% | |
| TTGAAGAGTTCATCCGCGCA+AGG | + | chr8.4:58203596-58203615 | MS.gene87205:CDS | 50.0% | |
| TTGCAGCCATCTCAGAGAAG+TGG | - | chr8.4:58204908-58204927 | None:intergenic | 50.0% | |
| TTGCGCGGATGAACTCTTCA+AGG | - | chr8.4:58203597-58203616 | None:intergenic | 50.0% | |
| !! | CTAAAACTGACTTGCAGGGG+AGG | + | chr8.4:58205788-58205807 | MS.gene87205:intron | 50.0% |
| CAAAGAGCCCTCGTATCTCC+AGG | + | chr8.4:58205844-58205863 | MS.gene87205:CDS | 55.0% | |
| ! | AGGGACCTCGTTTGCTAGGA+AGG | + | chr8.4:58203557-58203576 | MS.gene87205:CDS | 55.0% |
| ! | GGGCCTTTGGGGAATCGTTT+CGG | + | chr8.4:58205408-58205427 | MS.gene87205:CDS | 55.0% |
| GGACAGGGACCTCGTTTGCT+AGG | + | chr8.4:58203553-58203572 | MS.gene87205:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 58203208 | 58205914 | 58203208 | ID=MS.gene87205 |
| chr8.4 | mRNA | 58203208 | 58205914 | 58203208 | ID=MS.gene87205.t1;Parent=MS.gene87205 |
| chr8.4 | exon | 58203208 | 58203618 | 58203208 | ID=MS.gene87205.t1.exon1;Parent=MS.gene87205.t1 |
| chr8.4 | CDS | 58203208 | 58203618 | 58203208 | ID=cds.MS.gene87205.t1;Parent=MS.gene87205.t1 |
| chr8.4 | exon | 58204288 | 58204409 | 58204288 | ID=MS.gene87205.t1.exon2;Parent=MS.gene87205.t1 |
| chr8.4 | CDS | 58204288 | 58204409 | 58204288 | ID=cds.MS.gene87205.t1;Parent=MS.gene87205.t1 |
| chr8.4 | exon | 58204526 | 58204721 | 58204526 | ID=MS.gene87205.t1.exon3;Parent=MS.gene87205.t1 |
| chr8.4 | CDS | 58204526 | 58204721 | 58204526 | ID=cds.MS.gene87205.t1;Parent=MS.gene87205.t1 |
| chr8.4 | exon | 58204858 | 58204975 | 58204858 | ID=MS.gene87205.t1.exon4;Parent=MS.gene87205.t1 |
| chr8.4 | CDS | 58204858 | 58204975 | 58204858 | ID=cds.MS.gene87205.t1;Parent=MS.gene87205.t1 |
| chr8.4 | exon | 58205061 | 58205108 | 58205061 | ID=MS.gene87205.t1.exon5;Parent=MS.gene87205.t1 |
| chr8.4 | CDS | 58205061 | 58205108 | 58205061 | ID=cds.MS.gene87205.t1;Parent=MS.gene87205.t1 |
| chr8.4 | exon | 58205329 | 58205429 | 58205329 | ID=MS.gene87205.t1.exon6;Parent=MS.gene87205.t1 |
| chr8.4 | CDS | 58205329 | 58205429 | 58205329 | ID=cds.MS.gene87205.t1;Parent=MS.gene87205.t1 |
| chr8.4 | exon | 58205557 | 58205686 | 58205557 | ID=MS.gene87205.t1.exon7;Parent=MS.gene87205.t1 |
| chr8.4 | CDS | 58205557 | 58205686 | 58205557 | ID=cds.MS.gene87205.t1;Parent=MS.gene87205.t1 |
| chr8.4 | exon | 58205805 | 58205914 | 58205805 | ID=MS.gene87205.t1.exon8;Parent=MS.gene87205.t1 |
| chr8.4 | CDS | 58205805 | 58205914 | 58205805 | ID=cds.MS.gene87205.t1;Parent=MS.gene87205.t1 |
| Gene Sequence |
| Protein sequence |
