Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87465.t1 | XP_024628461.1 | 98.8 | 412 | 5 | 0 | 1 | 412 | 1 | 412 | 4.10E-238 | 833.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87465.t1 | Q6Z2G9 | 62.2 | 429 | 144 | 5 | 1 | 412 | 1 | 428 | 8.0e-142 | 505.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87465.t1 | A0A072TSP9 | 98.8 | 412 | 5 | 0 | 1 | 412 | 1 | 412 | 2.9e-238 | 833.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene87465.t1 | TF | TUB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene87465 | MS.gene24262 | PPI |
| MS.gene90691 | MS.gene87465 | PPI |
| MS.gene87465 | MS.gene26978 | PPI |
| MS.gene27297 | MS.gene87465 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87465.t1 | MTR_8g077195 | 98.786 | 412 | 5 | 0 | 1 | 412 | 1 | 412 | 0.0 | 838 |
| MS.gene87465.t1 | MTR_5g020580 | 73.077 | 416 | 108 | 2 | 1 | 412 | 1 | 416 | 0.0 | 629 |
| MS.gene87465.t1 | MTR_8g077675 | 70.171 | 409 | 104 | 7 | 1 | 405 | 1 | 395 | 0.0 | 543 |
| MS.gene87465.t1 | MTR_8g077620 | 66.748 | 409 | 105 | 8 | 1 | 403 | 1 | 384 | 0.0 | 519 |
| MS.gene87465.t1 | MTR_1g022370 | 59.259 | 432 | 146 | 7 | 1 | 412 | 1 | 422 | 1.24e-174 | 494 |
| MS.gene87465.t1 | MTR_2g020280 | 57.453 | 369 | 148 | 3 | 46 | 412 | 32 | 393 | 1.76e-148 | 427 |
| MS.gene87465.t1 | MTR_2g007930 | 52.093 | 430 | 185 | 8 | 1 | 412 | 1 | 427 | 2.65e-145 | 420 |
| MS.gene87465.t1 | MTR_1g098790 | 51.364 | 440 | 177 | 12 | 1 | 412 | 1 | 431 | 6.74e-143 | 414 |
| MS.gene87465.t1 | MTR_1g088960 | 51.905 | 420 | 176 | 7 | 1 | 412 | 1 | 402 | 1.45e-142 | 412 |
| MS.gene87465.t1 | MTR_8g077650 | 57.990 | 388 | 91 | 10 | 37 | 409 | 3 | 333 | 2.72e-133 | 386 |
| MS.gene87465.t1 | MTR_2g076200 | 51.944 | 360 | 143 | 2 | 53 | 412 | 42 | 371 | 2.31e-125 | 367 |
| MS.gene87465.t1 | MTR_2g020280 | 58.140 | 301 | 117 | 3 | 114 | 412 | 1 | 294 | 2.52e-118 | 346 |
| MS.gene87465.t1 | MTR_2g076210 | 45.479 | 376 | 168 | 7 | 41 | 412 | 25 | 367 | 1.17e-98 | 299 |
| MS.gene87465.t1 | MTR_8g077640 | 65.022 | 223 | 52 | 4 | 1 | 205 | 46 | 260 | 1.37e-79 | 251 |
| MS.gene87465.t1 | MTR_8g077640 | 58.537 | 123 | 50 | 1 | 281 | 402 | 261 | 383 | 4.32e-38 | 142 |
| MS.gene87465.t1 | MTR_1g023800 | 61.224 | 147 | 54 | 2 | 1 | 146 | 1 | 145 | 4.62e-54 | 177 |
| MS.gene87465.t1 | MTR_0210s0010 | 52.475 | 101 | 41 | 2 | 96 | 196 | 9 | 102 | 2.62e-26 | 102 |
| MS.gene87465.t1 | MTR_0479s0040 | 57.143 | 70 | 24 | 1 | 112 | 181 | 12 | 75 | 1.32e-17 | 77.4 |
| MS.gene87465.t1 | MTR_2g105390 | 27.513 | 189 | 114 | 7 | 233 | 411 | 184 | 359 | 7.66e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87465.t1 | AT2G18280 | 62.981 | 416 | 127 | 9 | 1 | 412 | 1 | 393 | 1.06e-177 | 501 |
| MS.gene87465.t1 | AT2G18280 | 62.981 | 416 | 127 | 9 | 1 | 412 | 1 | 393 | 1.06e-177 | 501 |
| MS.gene87465.t1 | AT2G47900 | 53.606 | 416 | 180 | 6 | 1 | 412 | 1 | 407 | 1.55e-149 | 430 |
| MS.gene87465.t1 | AT2G47900 | 53.735 | 415 | 180 | 6 | 1 | 412 | 1 | 406 | 3.39e-149 | 429 |
| MS.gene87465.t1 | AT2G47900 | 53.735 | 415 | 180 | 6 | 1 | 412 | 1 | 406 | 3.39e-149 | 429 |
| MS.gene87465.t1 | AT1G47270 | 54.545 | 429 | 137 | 11 | 1 | 412 | 1 | 388 | 2.25e-148 | 426 |
| MS.gene87465.t1 | AT1G47270 | 54.779 | 429 | 136 | 11 | 1 | 412 | 25 | 412 | 3.41e-148 | 427 |
| MS.gene87465.t1 | AT1G47270 | 54.779 | 429 | 136 | 11 | 1 | 412 | 26 | 413 | 4.25e-148 | 427 |
| MS.gene87465.t1 | AT1G25280 | 49.889 | 449 | 184 | 9 | 1 | 412 | 1 | 445 | 3.75e-141 | 410 |
| MS.gene87465.t1 | AT1G76900 | 49.127 | 458 | 184 | 8 | 1 | 412 | 1 | 455 | 4.50e-138 | 402 |
| MS.gene87465.t1 | AT1G76900 | 49.127 | 458 | 184 | 8 | 1 | 412 | 1 | 455 | 4.50e-138 | 402 |
| MS.gene87465.t1 | AT1G76900 | 49.127 | 458 | 184 | 8 | 1 | 412 | 1 | 455 | 4.50e-138 | 402 |
| MS.gene87465.t1 | AT1G43640 | 47.045 | 440 | 194 | 11 | 1 | 412 | 1 | 429 | 6.02e-129 | 379 |
| MS.gene87465.t1 | AT3G06380 | 51.507 | 365 | 155 | 7 | 53 | 412 | 33 | 380 | 4.98e-123 | 362 |
| MS.gene87465.t1 | AT1G53320 | 51.515 | 363 | 146 | 4 | 53 | 412 | 44 | 379 | 1.88e-122 | 360 |
| MS.gene87465.t1 | AT5G18680 | 50.541 | 370 | 162 | 7 | 49 | 412 | 35 | 389 | 8.04e-120 | 353 |
| MS.gene87465.t1 | AT1G43640 | 49.051 | 369 | 157 | 8 | 67 | 412 | 3 | 363 | 1.66e-116 | 344 |
| MS.gene87465.t1 | AT3G06380 | 51.163 | 301 | 126 | 6 | 116 | 412 | 5 | 288 | 4.93e-98 | 295 |
| MS.gene87465.t1 | AT5G18680 | 51.290 | 310 | 131 | 6 | 108 | 412 | 3 | 297 | 1.74e-97 | 293 |
| MS.gene87465.t1 | AT1G25280 | 51.866 | 268 | 101 | 5 | 172 | 412 | 1 | 267 | 4.81e-85 | 260 |
| MS.gene87465.t1 | AT1G25280 | 51.866 | 268 | 101 | 5 | 172 | 412 | 1 | 267 | 4.81e-85 | 260 |
| MS.gene87465.t1 | AT1G61940 | 54.023 | 87 | 40 | 0 | 56 | 142 | 1 | 87 | 5.16e-28 | 111 |
| MS.gene87465.t1 | AT1G61940 | 54.098 | 61 | 28 | 0 | 56 | 116 | 1 | 61 | 2.01e-16 | 79.0 |
Find 112 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGGCCCTTCTTATCTTTC+TGG | 0.112808 | 8.3:+26911656 | None:intergenic |
| ATTACTTGCTTCAATGAAAT+AGG | 0.231585 | 8.3:+26912096 | None:intergenic |
| ATGATGCAGTGCACTCTTCT+TGG | 0.233427 | 8.3:+26911279 | None:intergenic |
| GAGGTAATGATGTTGGGGTT+GGG | 0.282508 | 8.3:+26911214 | None:intergenic |
| TCTACCTCCTGAATTGCTTT+TGG | 0.284311 | 8.3:-26912262 | MS.gene87465:CDS |
| TGACCGACATAGCCAATTCT+TGG | 0.292823 | 8.3:+26912347 | None:intergenic |
| ATCTTACAGTTTGGAAAGAT+TGG | 0.295811 | 8.3:-26910913 | MS.gene87465:CDS |
| TATACCTATCTCAGCTATTC+AGG | 0.328559 | 8.3:-26911250 | MS.gene87465:CDS |
| ATTATGTCCAAAAGCAATTC+AGG | 0.329275 | 8.3:+26912255 | None:intergenic |
| CTAGCACTTGGTCGACGATT+TGG | 0.346541 | 8.3:+26911396 | None:intergenic |
| TGAGGTAATGATGTTGGGGT+TGG | 0.346751 | 8.3:+26911213 | None:intergenic |
| CTCTCATTCACAAGCAGGTT+TGG | 0.347646 | 8.3:+26910810 | None:intergenic |
| AGGTAATGATGTTGGGGTTG+GGG | 0.348080 | 8.3:+26911215 | None:intergenic |
| CCCTGTTGAATAGGTTCAAC+TGG | 0.348623 | 8.3:+26912297 | None:intergenic |
| TCCAGTTGAACCTATTCAAC+AGG | 0.363499 | 8.3:-26912298 | MS.gene87465:CDS |
| ATCCGATCCAGTGCTTTATT+CGG | 0.365212 | 8.3:-26911962 | MS.gene87465:CDS |
| TTTACCAACATATTTGTTGC+TGG | 0.366133 | 8.3:+26911587 | None:intergenic |
| GAAAGGGTAATCTTACAGTT+TGG | 0.371540 | 8.3:-26910922 | MS.gene87465:CDS |
| CCAGAGAGCATTTAGCTCAT+AGG | 0.381684 | 8.3:+26911311 | None:intergenic |
| CTTCGTGTTGTACTTAGGTT+TGG | 0.385998 | 8.3:-26911919 | MS.gene87465:CDS |
| GTGTTGGTGCCTAAACTTCA+TGG | 0.395112 | 8.3:-26911028 | MS.gene87465:CDS |
| ATCGAGCCTTGGCTCGGTTC+TGG | 0.397446 | 8.3:+26911102 | None:intergenic |
| TAACACGACCCATGAAGTTT+AGG | 0.421461 | 8.3:+26911019 | None:intergenic |
| CACCGACTTCGTCATATCCT+TGG | 0.432911 | 8.3:-26911631 | MS.gene87465:CDS |
| ATATTTGAGGTAATGATGTT+GGG | 0.438676 | 8.3:+26911208 | None:intergenic |
| CCAGCATGTAACAATCTTGT+TGG | 0.440142 | 8.3:-26911342 | MS.gene87465:CDS |
| GTGCTTCGGTATGTAAATCA+TGG | 0.451227 | 8.3:-26912176 | MS.gene87465:CDS |
| CTAAATGCTCTCTGGACTAG+AGG | 0.452982 | 8.3:-26911303 | MS.gene87465:CDS |
| TTTCTTCCGCTGAGCAAGAA+AGG | 0.454492 | 8.3:-26910939 | MS.gene87465:CDS |
| CCTTCCTGAATAGCTGAGAT+AGG | 0.455053 | 8.3:+26911246 | None:intergenic |
| TCAAGCAGATTGCAAAGGCT+TGG | 0.460094 | 8.3:+26910845 | None:intergenic |
| TTCTTTCAGTGCTGGTGAGG+GGG | 0.460173 | 8.3:+26911170 | None:intergenic |
| AATATTTGAGGTAATGATGT+TGG | 0.461771 | 8.3:+26911207 | None:intergenic |
| GGGGTTCCGACACCAAGAAT+TGG | 0.468962 | 8.3:-26912359 | MS.gene87465:CDS |
| TCTACCTTCGTGTTGTACTT+AGG | 0.472018 | 8.3:-26911924 | MS.gene87465:CDS |
| AGCATTTAGCTCATAGGAAA+TGG | 0.472326 | 8.3:+26911317 | None:intergenic |
| GCCCACTGTCCCTGTTGAAT+AGG | 0.474061 | 8.3:+26912288 | None:intergenic |
| CCAGAGTACGAATCTGTCAT+TGG | 0.478687 | 8.3:+26911141 | None:intergenic |
| AAAGGTTCACTGAATATTTG+AGG | 0.481469 | 8.3:+26911195 | None:intergenic |
| TTGAAGAGAGTGAGACATCT+TGG | 0.483464 | 8.3:-26912224 | MS.gene87465:CDS |
| GTTGTCATATATAGCAAACT+TGG | 0.484168 | 8.3:+26911446 | None:intergenic |
| AAAACAACAACAGCACGTGC+AGG | 0.486562 | 8.3:+26912201 | None:intergenic |
| CCAAGGCTCGATGGACTCCT+TGG | 0.492424 | 8.3:-26911091 | MS.gene87465:CDS |
| CCTATGAGCTAAATGCTCTC+TGG | 0.493546 | 8.3:-26911311 | MS.gene87465:CDS |
| CACAGCTCTCATTCACAAGC+AGG | 0.495782 | 8.3:+26910805 | None:intergenic |
| ACCGACTTCGTCATATCCTT+GGG | 0.498593 | 8.3:-26911630 | MS.gene87465:CDS |
| GTCAAAGTCACATGTTGCTC+CGG | 0.499201 | 8.3:-26912328 | MS.gene87465:CDS |
| TTGTTACATGCTGGAACTCT+TGG | 0.500747 | 8.3:+26911351 | None:intergenic |
| TCGGTTCTGGTAGCTCTGAT+AGG | 0.502232 | 8.3:+26911115 | None:intergenic |
| AAGTATAGTCCGCGAGCTCA+AGG | 0.504569 | 8.3:-26912415 | MS.gene87465:CDS |
| TGCTAGACTTAATTCTAAGC+AGG | 0.515167 | 8.3:-26911379 | MS.gene87465:CDS |
| TTTCTTTCAGTGCTGGTGAG+GGG | 0.522102 | 8.3:+26911169 | None:intergenic |
| TCTTTCAGTGCTGGTGAGGG+GGG | 0.523809 | 8.3:+26911171 | None:intergenic |
| GATCGGATAATCACGAGGAC+CGG | 0.524270 | 8.3:+26911977 | None:intergenic |
| GCAGATTGCAAAGGCTTGGA+AGG | 0.525320 | 8.3:+26910849 | None:intergenic |
| AATAGGTAGCATATCAAAGC+GGG | 0.526116 | 8.3:-26912379 | MS.gene87465:CDS |
| TTCTTCCGCTGAGCAAGAAA+GGG | 0.530855 | 8.3:-26910938 | MS.gene87465:CDS |
| GGTTCAACTGGAGTTACATC+CGG | 0.536368 | 8.3:+26912309 | None:intergenic |
| TAGCCGCCAGAAAGATAAGA+AGG | 0.537324 | 8.3:-26911662 | MS.gene87465:CDS |
| CCAAGGAGTCCATCGAGCCT+TGG | 0.540676 | 8.3:+26911091 | None:intergenic |
| ATCGGATAATCACGAGGACC+GGG | 0.546623 | 8.3:+26911978 | None:intergenic |
| AGTATAGTCCGCGAGCTCAA+GGG | 0.546651 | 8.3:-26912414 | MS.gene87465:CDS |
| CCAATGACAGATTCGTACTC+TGG | 0.552500 | 8.3:-26911141 | MS.gene87465:CDS |
| CCAACAAGATTGTTACATGC+TGG | 0.555601 | 8.3:+26911342 | None:intergenic |
| TGAAGTTTAGGCACCAACAC+TGG | 0.557707 | 8.3:+26911031 | None:intergenic |
| CGAGCCAGCAACAAATATGT+TGG | 0.568606 | 8.3:-26911591 | MS.gene87465:CDS |
| CGATCCAGTGCTTTATTCGG+AGG | 0.568767 | 8.3:-26911959 | MS.gene87465:CDS |
| ACCTATTCAACAGGGACAGT+GGG | 0.571704 | 8.3:-26912289 | MS.gene87465:CDS |
| GAGTCCATCGAGCCTTGGCT+CGG | 0.572639 | 8.3:+26911096 | None:intergenic |
| TGTTGGTGCCTAAACTTCAT+GGG | 0.575598 | 8.3:-26911027 | MS.gene87465:CDS |
| TGTTCCTCCGAATAAAGCAC+TGG | 0.582412 | 8.3:+26911955 | None:intergenic |
| TGGAGCTGCTCATGCCACCT+AGG | 0.585203 | 8.3:+26911051 | None:intergenic |
| GGCATGAGCAGCTCCAGTGT+TGG | 0.585590 | 8.3:-26911044 | MS.gene87465:CDS |
| GGCCCTTCTTATCTTTCTGG+CGG | 0.587954 | 8.3:+26911659 | None:intergenic |
| GTATAGTCCGCGAGCTCAAG+GGG | 0.588978 | 8.3:-26912413 | MS.gene87465:CDS |
| AGAAAGATAAGAAGGGCCAC+AGG | 0.590973 | 8.3:-26911654 | MS.gene87465:CDS |
| GCTTGTCAAGCAGATTGCAA+AGG | 0.591302 | 8.3:+26910840 | None:intergenic |
| CTCCGAATAAAGCACTGGAT+CGG | 0.592057 | 8.3:+26911960 | None:intergenic |
| TAAATGCTCTCTGGACTAGA+GGG | 0.594786 | 8.3:-26911302 | MS.gene87465:CDS |
| CTGCAGCGTCATGTGGAGGT+TGG | 0.594900 | 8.3:+26911424 | None:intergenic |
| AGAACCGAGCCAAGGCTCGA+TGG | 0.600159 | 8.3:-26911100 | MS.gene87465:CDS |
| ACACCAAGAATTGGCTATGT+CGG | 0.600503 | 8.3:-26912350 | MS.gene87465:CDS |
| AAACTCCTCAGCAATGTGGA+AGG | 0.605709 | 8.3:-26912128 | MS.gene87465:CDS |
| CCTATCTCAGCTATTCAGGA+AGG | 0.605737 | 8.3:-26911246 | MS.gene87465:CDS |
| AAGGCTTGGAAGGCAGAGAG+TGG | 0.610317 | 8.3:+26910859 | None:intergenic |
| GAGTGGGTAAGAGTAGTCCA+TGG | 0.613248 | 8.3:+26910876 | None:intergenic |
| TATTTGAGGTAATGATGTTG+GGG | 0.613275 | 8.3:+26911209 | None:intergenic |
| ACAAATATGTTGGTAAACTG+AGG | 0.614123 | 8.3:-26911581 | MS.gene87465:intron |
| TATGACGAAGTCGGTGCCTG+TGG | 0.616731 | 8.3:+26911638 | None:intergenic |
| CTTCATGGGTCGTGTTACAG+TGG | 0.629354 | 8.3:-26911013 | MS.gene87465:CDS |
| ATCAAAACTCCTCAGCAATG+TGG | 0.629509 | 8.3:-26912132 | MS.gene87465:CDS |
| ACATAGCCAATTCTTGGTGT+CGG | 0.630203 | 8.3:+26912353 | None:intergenic |
| AACCTATTCAACAGGGACAG+TGG | 0.631854 | 8.3:-26912290 | MS.gene87465:CDS |
| GGTTGAACTGCAGCGTCATG+TGG | 0.634444 | 8.3:+26911417 | None:intergenic |
| TTAGAATTAAGTCTAGCACT+TGG | 0.637554 | 8.3:+26911384 | None:intergenic |
| ATCTCAGCTATTCAGGAAGG+AGG | 0.641582 | 8.3:-26911243 | MS.gene87465:CDS |
| GAGCTACCAGAACCGAGCCA+AGG | 0.641949 | 8.3:-26911108 | MS.gene87465:CDS |
| GCGGAAGAAACATTATGAGA+CGG | 0.646089 | 8.3:+26910952 | None:intergenic |
| TGGAAAAGATATATTCACCA+TGG | 0.647072 | 8.3:-26910893 | MS.gene87465:CDS |
| AGGCTTGGAAGGCAGAGAGT+GGG | 0.650720 | 8.3:+26910860 | None:intergenic |
| AGCCGCCAGAAAGATAAGAA+GGG | 0.664963 | 8.3:-26911661 | MS.gene87465:CDS |
| GTGATCCTTCCACATTGCTG+AGG | 0.665555 | 8.3:+26912123 | None:intergenic |
| ACCCAAGGATATGACGAAGT+CGG | 0.668918 | 8.3:+26911629 | None:intergenic |
| TGAACTGCAGCGTCATGTGG+AGG | 0.671155 | 8.3:+26911420 | None:intergenic |
| CACTGGATCGGATAATCACG+AGG | 0.678479 | 8.3:+26911972 | None:intergenic |
| CCAGTTGAACCTATTCAACA+GGG | 0.686684 | 8.3:-26912297 | MS.gene87465:CDS |
| GATTACCCTTTCTTGCTCAG+CGG | 0.690765 | 8.3:+26910933 | None:intergenic |
| ATGTCCAAAAGCAATTCAGG+AGG | 0.691534 | 8.3:+26912258 | None:intergenic |
| CTTCGGTATGTAAATCATGG+AGG | 0.713760 | 8.3:-26912173 | MS.gene87465:CDS |
| GAATAGGTAGCATATCAAAG+CGG | 0.721866 | 8.3:-26912380 | MS.gene87465:CDS |
| ATAGGTAGCATATCAAAGCG+GGG | 0.729686 | 8.3:-26912378 | MS.gene87465:CDS |
| CAAACCTAAGTACAACACGA+AGG | 0.754352 | 8.3:+26911920 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACAAAAAAGAAAAAAATGT+CGG | + | chr8.3:26911475-26911494 | None:intergenic | 15.0% |
| !!! | GCATTTAAATTATCTTATTT+TGG | - | chr8.3:26911508-26911527 | MS.gene87465:intron | 15.0% |
| !!! | AATTTGGATTAGACTAAAAA+AGG | + | chr8.3:26911181-26911200 | None:intergenic | 20.0% |
| !!! | ATTTGGATTAGACTAAAAAA+GGG | + | chr8.3:26911180-26911199 | None:intergenic | 20.0% |
| !!! | CAACATGATTTTTATACATT+TGG | - | chr8.3:26911750-26911769 | MS.gene87465:intron | 20.0% |
| ! | AGTCTAATCCAAATTATTCT+TGG | - | chr8.3:26911186-26911205 | MS.gene87465:CDS | 25.0% |
| ! | ATTACTTGCTTCAATGAAAT+AGG | + | chr8.3:26911146-26911165 | None:intergenic | 25.0% |
| ! | ATTTATTGCAATTCAGATTG+TGG | - | chr8.3:26911436-26911455 | MS.gene87465:CDS | 25.0% |
| !! | AATATTTGAGGTAATGATGT+TGG | + | chr8.3:26912035-26912054 | None:intergenic | 25.0% |
| !! | ATATTTGAGGTAATGATGTT+GGG | + | chr8.3:26912034-26912053 | None:intergenic | 25.0% |
| !! | ATGATTTTTATACATTTGGC+AGG | - | chr8.3:26911754-26911773 | MS.gene87465:intron | 25.0% |
| !! | TAAGAAGCATAAAAAACCTA+AGG | + | chr8.3:26911213-26911232 | None:intergenic | 25.0% |
| !! | TTTGGATTAGACTAAAAAAG+GGG | + | chr8.3:26911179-26911198 | None:intergenic | 25.0% |
| !!! | CTTTAAGATGATAACTTACA+TGG | + | chr8.3:26911348-26911367 | None:intergenic | 25.0% |
| AAAGGTTCACTGAATATTTG+AGG | + | chr8.3:26912047-26912066 | None:intergenic | 30.0% | |
| ATCATGTTGTTGAGATTACA+AGG | + | chr8.3:26911739-26911758 | None:intergenic | 30.0% | |
| ATCTTACAGTTTGGAAAGAT+TGG | - | chr8.3:26912326-26912345 | MS.gene87465:CDS | 30.0% | |
| ATTATGTCCAAAAGCAATTC+AGG | + | chr8.3:26910987-26911006 | None:intergenic | 30.0% | |
| CGGATGAAAAACTGATATAA+GGG | + | chr8.3:26911713-26911732 | None:intergenic | 30.0% | |
| GAAATTCAACATTCATAGTC+AGG | + | chr8.3:26911388-26911407 | None:intergenic | 30.0% | |
| GTTGTCATATATAGCAAACT+TGG | + | chr8.3:26911796-26911815 | None:intergenic | 30.0% | |
| TACTTAAAAACAAGTCTCCT+AGG | - | chr8.3:26912171-26912190 | MS.gene87465:CDS | 30.0% | |
| TCATGTTGTTGAGATTACAA+GGG | + | chr8.3:26911738-26911757 | None:intergenic | 30.0% | |
| TCGGATGAAAAACTGATATA+AGG | + | chr8.3:26911714-26911733 | None:intergenic | 30.0% | |
| TGGAAAAGATATATTCACCA+TGG | - | chr8.3:26912346-26912365 | MS.gene87465:CDS | 30.0% | |
| TTAGAATTAAGTCTAGCACT+TGG | + | chr8.3:26911858-26911877 | None:intergenic | 30.0% | |
| ! | ACAAATATGTTGGTAAACTG+AGG | - | chr8.3:26911658-26911677 | MS.gene87465:CDS | 30.0% |
| ! | ATTTGGCAGGTCTAATTTTT+GGG | - | chr8.3:26911767-26911786 | MS.gene87465:intron | 30.0% |
| ! | TATTTGAGGTAATGATGTTG+GGG | + | chr8.3:26912033-26912052 | None:intergenic | 30.0% |
| ! | TTTACCAACATATTTGTTGC+TGG | + | chr8.3:26911655-26911674 | None:intergenic | 30.0% |
| !!! | AGACTTGTTTTTAAGTACCA+AGG | + | chr8.3:26912168-26912187 | None:intergenic | 30.0% |
| !!! | TGTTGTTGTTTTTTGTGCTT+CGG | - | chr8.3:26911049-26911068 | MS.gene87465:CDS | 30.0% |
| AAGGGGATGAAAAATGGAAT+AGG | - | chr8.3:26910843-26910862 | MS.gene87465:CDS | 35.0% | |
| AATAGGTAGCATATCAAAGC+GGG | - | chr8.3:26910860-26910879 | MS.gene87465:CDS | 35.0% | |
| CATGTTGTTGAGATTACAAG+GGG | + | chr8.3:26911737-26911756 | None:intergenic | 35.0% | |
| CCAAATTATTCTTGGTCCTT+AGG | - | chr8.3:26911194-26911213 | MS.gene87465:CDS | 35.0% | |
| CCTAAGGACCAAGAATAATT+TGG | + | chr8.3:26911197-26911216 | None:intergenic | 35.0% | |
| GAAAGGGTAATCTTACAGTT+TGG | - | chr8.3:26912317-26912336 | MS.gene87465:CDS | 35.0% | |
| GAATAGGTAGCATATCAAAG+CGG | - | chr8.3:26910859-26910878 | MS.gene87465:CDS | 35.0% | |
| TATACCTATCTCAGCTATTC+AGG | - | chr8.3:26911989-26912008 | MS.gene87465:intron | 35.0% | |
| TGCTAGACTTAATTCTAAGC+AGG | - | chr8.3:26911860-26911879 | MS.gene87465:intron | 35.0% | |
| TTAAAAACAAGTCTCCTAGG+TGG | - | chr8.3:26912174-26912193 | MS.gene87465:CDS | 35.0% | |
| ! | AGCATTTAGCTCATAGGAAA+TGG | + | chr8.3:26911925-26911944 | None:intergenic | 35.0% |
| ! | CATTTGGCAGGTCTAATTTT+TGG | - | chr8.3:26911766-26911785 | MS.gene87465:intron | 35.0% |
| ! | GCTTTTGGACATAATCTGTA+GGG | - | chr8.3:26910992-26911011 | MS.gene87465:CDS | 35.0% |
| ! | GTTTTGTCGTAACTGTATAG+CGG | - | chr8.3:26911530-26911549 | MS.gene87465:intron | 35.0% |
| ! | TGCTTTTGGACATAATCTGT+AGG | - | chr8.3:26910991-26911010 | MS.gene87465:CDS | 35.0% |
| ! | TTTGGCAGGTCTAATTTTTG+GGG | - | chr8.3:26911768-26911787 | MS.gene87465:intron | 35.0% |
| ACACCAAGAATTGGCTATGT+CGG | - | chr8.3:26910889-26910908 | MS.gene87465:CDS | 40.0% | |
| AGAAAAATCGTCTGTACCCA+AGG | + | chr8.3:26911628-26911647 | None:intergenic | 40.0% | |
| ATAGGTAGCATATCAAAGCG+GGG | - | chr8.3:26910861-26910880 | MS.gene87465:CDS | 40.0% | |
| ATCAAAACTCCTCAGCAATG+TGG | - | chr8.3:26911107-26911126 | MS.gene87465:CDS | 40.0% | |
| ATGTCCAAAAGCAATTCAGG+AGG | + | chr8.3:26910984-26911003 | None:intergenic | 40.0% | |
| CAAACCTAAGTACAACACGA+AGG | + | chr8.3:26911322-26911341 | None:intergenic | 40.0% | |
| CCAACAAGATTGTTACATGC+TGG | + | chr8.3:26911900-26911919 | None:intergenic | 40.0% | |
| CCAGCATGTAACAATCTTGT+TGG | - | chr8.3:26911897-26911916 | MS.gene87465:intron | 40.0% | |
| CCAGTTGAACCTATTCAACA+GGG | - | chr8.3:26910942-26910961 | MS.gene87465:CDS | 40.0% | |
| CCTTATGTGTATGAATAGCC+CGG | - | chr8.3:26911243-26911262 | MS.gene87465:CDS | 40.0% | |
| CTTCGGTATGTAAATCATGG+AGG | - | chr8.3:26911066-26911085 | MS.gene87465:CDS | 40.0% | |
| CTTCGTGTTGTACTTAGGTT+TGG | - | chr8.3:26911320-26911339 | MS.gene87465:CDS | 40.0% | |
| GCGGAAGAAACATTATGAGA+CGG | + | chr8.3:26912290-26912309 | None:intergenic | 40.0% | |
| GTGCTTCGGTATGTAAATCA+TGG | - | chr8.3:26911063-26911082 | MS.gene87465:CDS | 40.0% | |
| TAACACGACCCATGAAGTTT+AGG | + | chr8.3:26912223-26912242 | None:intergenic | 40.0% | |
| TCCAGTTGAACCTATTCAAC+AGG | - | chr8.3:26910941-26910960 | MS.gene87465:CDS | 40.0% | |
| TCTACCTTCGTGTTGTACTT+AGG | - | chr8.3:26911315-26911334 | MS.gene87465:CDS | 40.0% | |
| TTGAAGAGAGTGAGACATCT+TGG | - | chr8.3:26911015-26911034 | MS.gene87465:CDS | 40.0% | |
| TTGTTACATGCTGGAACTCT+TGG | + | chr8.3:26911891-26911910 | None:intergenic | 40.0% | |
| TTGTTGAGATTACAAGGGGT+CGG | + | chr8.3:26911733-26911752 | None:intergenic | 40.0% | |
| ! | ACATAGCCAATTCTTGGTGT+CGG | + | chr8.3:26910889-26910908 | None:intergenic | 40.0% |
| ! | ATCCGATCCAGTGCTTTATT+CGG | - | chr8.3:26911277-26911296 | MS.gene87465:CDS | 40.0% |
| ! | TAAATGCTCTCTGGACTAGA+GGG | - | chr8.3:26911937-26911956 | MS.gene87465:CDS | 40.0% |
| ! | TCTACCTCCTGAATTGCTTT+TGG | - | chr8.3:26910977-26910996 | MS.gene87465:CDS | 40.0% |
| ! | TGGTAAACTGAGGCAAGTTT+TGG | - | chr8.3:26911668-26911687 | MS.gene87465:CDS | 40.0% |
| ! | TGTTGGTGCCTAAACTTCAT+GGG | - | chr8.3:26912212-26912231 | MS.gene87465:CDS | 40.0% |
| !!! | GGACTTTTTTCTTTCAGTGC+TGG | + | chr8.3:26912080-26912099 | None:intergenic | 40.0% |
| !!! | TTTTCTTTCAGTGCTGGTGA+GGG | + | chr8.3:26912074-26912093 | None:intergenic | 40.0% |
| !!! | TTTTTCTTTCAGTGCTGGTG+AGG | + | chr8.3:26912075-26912094 | None:intergenic | 40.0% |
| AAAACAACAACAGCACGTGC+AGG | + | chr8.3:26911041-26911060 | None:intergenic | 45.0% | |
| AAACTCCTCAGCAATGTGGA+AGG | - | chr8.3:26911111-26911130 | MS.gene87465:CDS | 45.0% | |
| AACCTATTCAACAGGGACAG+TGG | - | chr8.3:26910949-26910968 | MS.gene87465:CDS | 45.0% | |
| ACCCAAGGATATGACGAAGT+CGG | + | chr8.3:26911613-26911632 | None:intergenic | 45.0% | |
| ACCTATTCAACAGGGACAGT+GGG | - | chr8.3:26910950-26910969 | MS.gene87465:CDS | 45.0% | |
| AGAAAGATAAGAAGGGCCAC+AGG | - | chr8.3:26911585-26911604 | MS.gene87465:CDS | 45.0% | |
| AGCCGCCAGAAAGATAAGAA+GGG | - | chr8.3:26911578-26911597 | MS.gene87465:intron | 45.0% | |
| AGGTAATGATGTTGGGGTTG+GGG | + | chr8.3:26912027-26912046 | None:intergenic | 45.0% | |
| ATCTCAGCTATTCAGGAAGG+AGG | - | chr8.3:26911996-26912015 | MS.gene87465:intron | 45.0% | |
| ATGATGCAGTGCACTCTTCT+TGG | + | chr8.3:26911963-26911982 | None:intergenic | 45.0% | |
| CCAATGACAGATTCGTACTC+TGG | - | chr8.3:26912098-26912117 | MS.gene87465:intron | 45.0% | |
| CCAGAGTACGAATCTGTCAT+TGG | + | chr8.3:26912101-26912120 | None:intergenic | 45.0% | |
| CCCTGTTGAATAGGTTCAAC+TGG | + | chr8.3:26910945-26910964 | None:intergenic | 45.0% | |
| CCGGGCTATTCATACACATA+AGG | + | chr8.3:26911246-26911265 | None:intergenic | 45.0% | |
| CCTATCTCAGCTATTCAGGA+AGG | - | chr8.3:26911993-26912012 | MS.gene87465:intron | 45.0% | |
| CCTATGAGCTAAATGCTCTC+TGG | - | chr8.3:26911928-26911947 | MS.gene87465:CDS | 45.0% | |
| CCTTCCTGAATAGCTGAGAT+AGG | + | chr8.3:26911996-26912015 | None:intergenic | 45.0% | |
| CGAGCCAGCAACAAATATGT+TGG | - | chr8.3:26911648-26911667 | MS.gene87465:CDS | 45.0% | |
| GAGCTCAAGGGGATGAAAAA+TGG | - | chr8.3:26910837-26910856 | MS.gene87465:CDS | 45.0% | |
| GAGGTAATGATGTTGGGGTT+GGG | + | chr8.3:26912028-26912047 | None:intergenic | 45.0% | |
| GATTACCCTTTCTTGCTCAG+CGG | + | chr8.3:26912309-26912328 | None:intergenic | 45.0% | |
| GCTTGTCAAGCAGATTGCAA+AGG | + | chr8.3:26912402-26912421 | None:intergenic | 45.0% | |
| GGTTCAACTGGAGTTACATC+CGG | + | chr8.3:26910933-26910952 | None:intergenic | 45.0% | |
| GTCAAAGTCACATGTTGCTC+CGG | - | chr8.3:26910911-26910930 | MS.gene87465:CDS | 45.0% | |
| TAGCCGCCAGAAAGATAAGA+AGG | - | chr8.3:26911577-26911596 | MS.gene87465:intron | 45.0% | |
| TCAAGCAGATTGCAAAGGCT+TGG | + | chr8.3:26912397-26912416 | None:intergenic | 45.0% | |
| TGAAGTTTAGGCACCAACAC+TGG | + | chr8.3:26912211-26912230 | None:intergenic | 45.0% | |
| TGACCGACATAGCCAATTCT+TGG | + | chr8.3:26910895-26910914 | None:intergenic | 45.0% | |
| TGAGGTAATGATGTTGGGGT+TGG | + | chr8.3:26912029-26912048 | None:intergenic | 45.0% | |
| TGTGGCCCTTCTTATCTTTC+TGG | + | chr8.3:26911586-26911605 | None:intergenic | 45.0% | |
| TGTTCCTCCGAATAAAGCAC+TGG | + | chr8.3:26911287-26911306 | None:intergenic | 45.0% | |
| TTCTTCCGCTGAGCAAGAAA+GGG | - | chr8.3:26912301-26912320 | MS.gene87465:CDS | 45.0% | |
| TTTCTTCCGCTGAGCAAGAA+AGG | - | chr8.3:26912300-26912319 | MS.gene87465:CDS | 45.0% | |
| ! | ACCGACTTCGTCATATCCTT+GGG | - | chr8.3:26911609-26911628 | MS.gene87465:CDS | 45.0% |
| ! | CTAAATGCTCTCTGGACTAG+AGG | - | chr8.3:26911936-26911955 | MS.gene87465:CDS | 45.0% |
| ! | GTGTTGGTGCCTAAACTTCA+TGG | - | chr8.3:26912211-26912230 | MS.gene87465:CDS | 45.0% |
| !! | CCAGAGAGCATTTAGCTCAT+AGG | + | chr8.3:26911931-26911950 | None:intergenic | 45.0% |
| !! | CTCCGAATAAAGCACTGGAT+CGG | + | chr8.3:26911282-26911301 | None:intergenic | 45.0% |
| !! | TTTCTTTCAGTGCTGGTGAG+GGG | + | chr8.3:26912073-26912092 | None:intergenic | 45.0% |
| AAGTATAGTCCGCGAGCTCA+AGG | - | chr8.3:26910824-26910843 | MS.gene87465:CDS | 50.0% | |
| AGTATAGTCCGCGAGCTCAA+GGG | - | chr8.3:26910825-26910844 | MS.gene87465:CDS | 50.0% | |
| ATCGGATAATCACGAGGACC+GGG | + | chr8.3:26911264-26911283 | None:intergenic | 50.0% | |
| CACTGGATCGGATAATCACG+AGG | + | chr8.3:26911270-26911289 | None:intergenic | 50.0% | |
| CTAGCACTTGGTCGACGATT+TGG | + | chr8.3:26911846-26911865 | None:intergenic | 50.0% | |
| CTTCATGGGTCGTGTTACAG+TGG | - | chr8.3:26912226-26912245 | MS.gene87465:CDS | 50.0% | |
| GAGTGGGTAAGAGTAGTCCA+TGG | + | chr8.3:26912366-26912385 | None:intergenic | 50.0% | |
| GATCGGATAATCACGAGGAC+CGG | + | chr8.3:26911265-26911284 | None:intergenic | 50.0% | |
| GCAGATTGCAAAGGCTTGGA+AGG | + | chr8.3:26912393-26912412 | None:intergenic | 50.0% | |
| GGCCCTTCTTATCTTTCTGG+CGG | + | chr8.3:26911583-26911602 | None:intergenic | 50.0% | |
| GTGATCCTTCCACATTGCTG+AGG | + | chr8.3:26911119-26911138 | None:intergenic | 50.0% | |
| ! | CGATCCAGTGCTTTATTCGG+AGG | - | chr8.3:26911280-26911299 | MS.gene87465:CDS | 50.0% |
| ! | TTTTCATCCCCTTGAGCTCG+CGG | + | chr8.3:26910836-26910855 | None:intergenic | 50.0% |
| !! | CACCGACTTCGTCATATCCT+TGG | - | chr8.3:26911608-26911627 | MS.gene87465:CDS | 50.0% |
| !! | TCGGTTCTGGTAGCTCTGAT+AGG | + | chr8.3:26912127-26912146 | None:intergenic | 50.0% |
| !! | TTCTTTCAGTGCTGGTGAGG+GGG | + | chr8.3:26912072-26912091 | None:intergenic | 50.0% |
| AAGGCTTGGAAGGCAGAGAG+TGG | + | chr8.3:26912383-26912402 | None:intergenic | 55.0% | |
| AGGCTTGGAAGGCAGAGAGT+GGG | + | chr8.3:26912382-26912401 | None:intergenic | 55.0% | |
| GCCCACTGTCCCTGTTGAAT+AGG | + | chr8.3:26910954-26910973 | None:intergenic | 55.0% | |
| GGGGTTCCGACACCAAGAAT+TGG | - | chr8.3:26910880-26910899 | MS.gene87465:CDS | 55.0% | |
| GGTTGAACTGCAGCGTCATG+TGG | + | chr8.3:26911825-26911844 | None:intergenic | 55.0% | |
| GTATAGTCCGCGAGCTCAAG+GGG | - | chr8.3:26910826-26910845 | MS.gene87465:CDS | 55.0% | |
| TGAACTGCAGCGTCATGTGG+AGG | + | chr8.3:26911822-26911841 | None:intergenic | 55.0% | |
| ! | TATGACGAAGTCGGTGCCTG+TGG | + | chr8.3:26911604-26911623 | None:intergenic | 55.0% |
| !! | TCTTTCAGTGCTGGTGAGGG+GGG | + | chr8.3:26912071-26912090 | None:intergenic | 55.0% |
| AGAACCGAGCCAAGGCTCGA+TGG | - | chr8.3:26912139-26912158 | MS.gene87465:CDS | 60.0% | |
| CCAAGGAGTCCATCGAGCCT+TGG | + | chr8.3:26912151-26912170 | None:intergenic | 60.0% | |
| CTGCAGCGTCATGTGGAGGT+TGG | + | chr8.3:26911818-26911837 | None:intergenic | 60.0% | |
| GAGCTACCAGAACCGAGCCA+AGG | - | chr8.3:26912131-26912150 | MS.gene87465:CDS | 60.0% | |
| GAGTCCATCGAGCCTTGGCT+CGG | + | chr8.3:26912146-26912165 | None:intergenic | 60.0% | |
| GGCATGAGCAGCTCCAGTGT+TGG | - | chr8.3:26912195-26912214 | MS.gene87465:CDS | 60.0% | |
| TGGAGCTGCTCATGCCACCT+AGG | + | chr8.3:26912191-26912210 | None:intergenic | 60.0% | |
| ! | CCAAGGCTCGATGGACTCCT+TGG | - | chr8.3:26912148-26912167 | MS.gene87465:CDS | 60.0% |
| !! | AGTGCTGGTGAGGGGGGAAA+AGG | + | chr8.3:26912065-26912084 | None:intergenic | 60.0% |
| !! | ATCGAGCCTTGGCTCGGTTC+TGG | + | chr8.3:26912140-26912159 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 26910813 | 26912448 | 26910813 | ID=MS.gene87465 |
| chr8.3 | mRNA | 26910813 | 26912448 | 26910813 | ID=MS.gene87465.t1;Parent=MS.gene87465 |
| chr8.3 | exon | 26912101 | 26912448 | 26912101 | ID=MS.gene87465.t1.exon1;Parent=MS.gene87465.t1 |
| chr8.3 | CDS | 26912101 | 26912448 | 26912101 | ID=cds.MS.gene87465.t1;Parent=MS.gene87465.t1 |
| chr8.3 | exon | 26911913 | 26912000 | 26911913 | ID=MS.gene87465.t1.exon2;Parent=MS.gene87465.t1 |
| chr8.3 | CDS | 26911913 | 26912000 | 26911913 | ID=cds.MS.gene87465.t1;Parent=MS.gene87465.t1 |
| chr8.3 | exon | 26911582 | 26911711 | 26911582 | ID=MS.gene87465.t1.exon3;Parent=MS.gene87465.t1 |
| chr8.3 | CDS | 26911582 | 26911711 | 26911582 | ID=cds.MS.gene87465.t1;Parent=MS.gene87465.t1 |
| chr8.3 | exon | 26910813 | 26911485 | 26910813 | ID=MS.gene87465.t1.exon4;Parent=MS.gene87465.t1 |
| chr8.3 | CDS | 26910813 | 26911485 | 26910813 | ID=cds.MS.gene87465.t1;Parent=MS.gene87465.t1 |
| Gene Sequence |
| Protein sequence |
