Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87693.t1 | XP_003623634.1 | 91.2 | 294 | 15 | 2 | 1 | 283 | 1 | 294 | 1.50E-151 | 545.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87693.t1 | K4BIZ9 | 39.8 | 181 | 95 | 4 | 14 | 189 | 12 | 183 | 2.8e-29 | 130.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87693.t1 | G7KY64 | 91.2 | 294 | 15 | 2 | 1 | 283 | 1 | 294 | 1.1e-151 | 545.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene87693.t1 | TF | WRKY |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050780 | MS.gene87693 | 0.817341 | 3.47E-52 | -1.69E-46 |
| MS.gene051494 | MS.gene87693 | 0.83108 | 2.04E-55 | -1.69E-46 |
| MS.gene051544 | MS.gene87693 | 0.810163 | 1.32E-50 | -1.69E-46 |
| MS.gene052297 | MS.gene87693 | 0.823535 | 1.31E-53 | -1.69E-46 |
| MS.gene052637 | MS.gene87693 | 0.809075 | 2.26E-50 | -1.69E-46 |
| MS.gene053147 | MS.gene87693 | 0.811141 | 8.12E-51 | -1.69E-46 |
| MS.gene053641 | MS.gene87693 | 0.814016 | 1.91E-51 | -1.69E-46 |
| MS.gene054581 | MS.gene87693 | 0.808705 | 2.72E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87693.t1 | MTR_7g073380 | 91.156 | 294 | 15 | 2 | 1 | 283 | 1 | 294 | 0.0 | 550 |
| MS.gene87693.t1 | MTR_7g073430 | 87.719 | 285 | 31 | 4 | 1 | 283 | 1 | 283 | 0.0 | 508 |
| MS.gene87693.t1 | MTR_0002s1250 | 40.458 | 262 | 131 | 6 | 13 | 264 | 5 | 251 | 7.20e-61 | 194 |
| MS.gene87693.t1 | MTR_8g005750 | 48.077 | 208 | 94 | 5 | 14 | 220 | 4 | 198 | 1.28e-57 | 186 |
| MS.gene87693.t1 | MTR_8g032510 | 45.540 | 213 | 106 | 5 | 14 | 220 | 7 | 215 | 3.59e-56 | 182 |
| MS.gene87693.t1 | MTR_2g075690 | 40.079 | 252 | 117 | 8 | 11 | 231 | 12 | 260 | 1.13e-49 | 166 |
| MS.gene87693.t1 | MTR_2g075700 | 41.152 | 243 | 115 | 5 | 17 | 231 | 17 | 259 | 4.74e-45 | 154 |
| MS.gene87693.t1 | MTR_2g075680 | 38.224 | 259 | 122 | 6 | 11 | 233 | 12 | 268 | 1.06e-42 | 148 |
| MS.gene87693.t1 | MTR_5g067700 | 38.983 | 236 | 109 | 12 | 5 | 238 | 4 | 206 | 3.82e-39 | 137 |
| MS.gene87693.t1 | MTR_3g093830 | 41.530 | 183 | 86 | 6 | 21 | 191 | 23 | 196 | 4.42e-38 | 136 |
| MS.gene87693.t1 | MTR_2g075750 | 54.455 | 101 | 45 | 1 | 108 | 207 | 13 | 113 | 1.12e-34 | 124 |
| MS.gene87693.t1 | MTR_2g075610 | 53.398 | 103 | 47 | 1 | 108 | 209 | 14 | 116 | 1.49e-33 | 121 |
| MS.gene87693.t1 | MTR_7g117200 | 32.487 | 197 | 105 | 4 | 12 | 195 | 9 | 190 | 2.91e-27 | 108 |
| MS.gene87693.t1 | MTR_3g090860 | 33.503 | 197 | 95 | 5 | 15 | 184 | 7 | 194 | 3.48e-26 | 105 |
| MS.gene87693.t1 | MTR_8g027860 | 51.765 | 85 | 33 | 1 | 106 | 182 | 111 | 195 | 3.76e-23 | 97.4 |
| MS.gene87693.t1 | MTR_8g099350 | 31.863 | 204 | 104 | 7 | 1 | 182 | 1 | 191 | 6.13e-21 | 91.7 |
| MS.gene87693.t1 | MTR_5g067680 | 38.889 | 108 | 61 | 1 | 75 | 182 | 159 | 261 | 8.44e-18 | 82.4 |
| MS.gene87693.t1 | MTR_5g073620 | 46.875 | 64 | 34 | 0 | 121 | 184 | 670 | 733 | 2.36e-14 | 73.6 |
| MS.gene87693.t1 | MTR_7g028415 | 51.667 | 60 | 26 | 1 | 122 | 181 | 92 | 148 | 2.37e-14 | 69.7 |
| MS.gene87693.t1 | MTR_7g028710 | 51.667 | 60 | 26 | 1 | 122 | 181 | 92 | 148 | 2.37e-14 | 69.7 |
| MS.gene87693.t1 | MTR_8g096730 | 35.088 | 114 | 68 | 3 | 76 | 189 | 26 | 133 | 3.50e-13 | 66.2 |
| MS.gene87693.t1 | MTR_8g092140 | 40.964 | 83 | 39 | 3 | 98 | 180 | 142 | 214 | 3.87e-13 | 67.8 |
| MS.gene87693.t1 | MTR_7g110720 | 35.345 | 116 | 72 | 2 | 66 | 180 | 158 | 271 | 1.80e-12 | 67.4 |
| MS.gene87693.t1 | MTR_3g095080 | 41.176 | 85 | 37 | 3 | 98 | 181 | 151 | 223 | 2.89e-12 | 65.5 |
| MS.gene87693.t1 | MTR_7g079010 | 43.077 | 65 | 34 | 1 | 116 | 180 | 134 | 195 | 4.99e-12 | 64.3 |
| MS.gene87693.t1 | MTR_1g086790 | 46.667 | 60 | 29 | 1 | 122 | 181 | 157 | 213 | 5.14e-12 | 65.5 |
| MS.gene87693.t1 | MTR_3g095080 | 41.176 | 85 | 37 | 3 | 98 | 181 | 127 | 199 | 5.26e-12 | 64.3 |
| MS.gene87693.t1 | MTR_2g088000 | 34.579 | 107 | 67 | 2 | 98 | 204 | 325 | 428 | 5.49e-12 | 66.2 |
| MS.gene87693.t1 | MTR_5g043880 | 47.458 | 59 | 28 | 1 | 122 | 180 | 123 | 178 | 6.54e-12 | 64.7 |
| MS.gene87693.t1 | MTR_8g007270 | 33.813 | 139 | 62 | 6 | 73 | 205 | 113 | 227 | 7.30e-12 | 63.9 |
| MS.gene87693.t1 | MTR_7g109800 | 46.667 | 60 | 29 | 1 | 122 | 181 | 144 | 200 | 1.46e-11 | 63.9 |
| MS.gene87693.t1 | MTR_3g053330 | 36.364 | 99 | 60 | 2 | 106 | 204 | 235 | 330 | 1.93e-11 | 64.3 |
| MS.gene87693.t1 | MTR_4g094588 | 47.458 | 59 | 28 | 1 | 122 | 180 | 177 | 232 | 4.60e-11 | 62.8 |
| MS.gene87693.t1 | MTR_5g091390 | 45.763 | 59 | 29 | 1 | 122 | 180 | 156 | 211 | 4.70e-11 | 62.8 |
| MS.gene87693.t1 | MTR_8g028565 | 39.744 | 78 | 43 | 2 | 106 | 181 | 136 | 211 | 7.20e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87693.t1 | AT3G56400 | 41.758 | 182 | 81 | 5 | 14 | 182 | 10 | 179 | 2.08e-37 | 134 |
| MS.gene87693.t1 | AT2G40750 | 37.500 | 200 | 92 | 8 | 14 | 182 | 14 | 211 | 4.87e-28 | 110 |
| MS.gene87693.t1 | AT1G66550 | 35.644 | 202 | 109 | 8 | 14 | 212 | 8 | 191 | 1.77e-27 | 107 |
| MS.gene87693.t1 | AT2G46400 | 34.783 | 184 | 90 | 5 | 15 | 189 | 8 | 170 | 1.55e-26 | 105 |
| MS.gene87693.t1 | AT5G01900 | 34.921 | 189 | 95 | 5 | 10 | 187 | 3 | 174 | 3.76e-26 | 103 |
| MS.gene87693.t1 | AT1G66550 | 33.831 | 201 | 109 | 7 | 14 | 212 | 8 | 186 | 7.89e-26 | 102 |
| MS.gene87693.t1 | AT5G22570 | 32.432 | 185 | 103 | 5 | 14 | 191 | 9 | 178 | 5.60e-24 | 98.6 |
| MS.gene87693.t1 | AT4G11070 | 31.959 | 194 | 108 | 4 | 12 | 182 | 8 | 200 | 9.27e-23 | 95.9 |
| MS.gene87693.t1 | AT1G66560 | 34.302 | 172 | 97 | 5 | 15 | 185 | 9 | 165 | 1.05e-22 | 94.4 |
| MS.gene87693.t1 | AT1G66600 | 34.091 | 176 | 94 | 5 | 14 | 185 | 8 | 165 | 5.75e-22 | 92.4 |
| MS.gene87693.t1 | AT2G40740 | 30.732 | 205 | 114 | 5 | 16 | 195 | 44 | 245 | 1.70e-20 | 89.4 |
| MS.gene87693.t1 | AT2G40740 | 30.732 | 205 | 114 | 5 | 16 | 195 | 53 | 254 | 1.89e-20 | 89.4 |
| MS.gene87693.t1 | AT5G24110 | 32.948 | 173 | 90 | 3 | 24 | 182 | 12 | 172 | 8.57e-20 | 87.4 |
| MS.gene87693.t1 | AT4G11070 | 32.948 | 173 | 102 | 3 | 12 | 182 | 8 | 168 | 3.80e-19 | 85.5 |
| MS.gene87693.t1 | AT1G80590 | 27.823 | 248 | 129 | 8 | 13 | 253 | 7 | 211 | 1.25e-18 | 83.2 |
| MS.gene87693.t1 | AT4G23810 | 45.882 | 85 | 38 | 1 | 106 | 182 | 133 | 217 | 1.86e-17 | 81.3 |
| MS.gene87693.t1 | AT1G69310 | 37.097 | 124 | 71 | 4 | 69 | 188 | 89 | 209 | 2.12e-14 | 72.0 |
| MS.gene87693.t1 | AT1G69310 | 37.097 | 124 | 71 | 4 | 69 | 188 | 89 | 209 | 2.12e-14 | 72.0 |
| MS.gene87693.t1 | AT1G69310 | 37.097 | 124 | 71 | 4 | 69 | 188 | 89 | 209 | 2.12e-14 | 72.0 |
| MS.gene87693.t1 | AT5G45260 | 52.632 | 57 | 27 | 0 | 124 | 180 | 1209 | 1265 | 3.03e-13 | 70.5 |
| MS.gene87693.t1 | AT5G13080 | 45.070 | 71 | 36 | 1 | 122 | 192 | 66 | 133 | 1.75e-12 | 64.3 |
| MS.gene87693.t1 | AT5G41570 | 40.964 | 83 | 44 | 2 | 98 | 180 | 75 | 152 | 1.75e-12 | 65.1 |
| MS.gene87693.t1 | AT2G37260 | 45.833 | 72 | 35 | 2 | 117 | 188 | 344 | 411 | 2.21e-12 | 67.0 |
| MS.gene87693.t1 | AT2G37260 | 45.833 | 72 | 35 | 2 | 117 | 188 | 262 | 329 | 2.84e-12 | 66.6 |
| MS.gene87693.t1 | AT2G37260 | 45.833 | 72 | 35 | 2 | 117 | 188 | 264 | 331 | 3.00e-12 | 66.6 |
| MS.gene87693.t1 | AT5G49520 | 41.791 | 67 | 36 | 1 | 122 | 188 | 220 | 283 | 5.12e-12 | 65.9 |
| MS.gene87693.t1 | AT2G46130 | 45.763 | 59 | 29 | 1 | 122 | 180 | 29 | 84 | 5.76e-12 | 61.6 |
| MS.gene87693.t1 | AT1G64000 | 43.077 | 65 | 34 | 1 | 116 | 180 | 107 | 168 | 7.40e-12 | 63.5 |
| MS.gene87693.t1 | AT3G01970 | 38.202 | 89 | 44 | 2 | 122 | 210 | 64 | 141 | 1.05e-11 | 62.0 |
| MS.gene87693.t1 | AT4G04450 | 33.929 | 112 | 71 | 2 | 94 | 204 | 168 | 277 | 2.03e-11 | 64.3 |
| MS.gene87693.t1 | AT2G47260 | 46.667 | 60 | 29 | 1 | 122 | 181 | 173 | 229 | 2.69e-11 | 63.5 |
| MS.gene87693.t1 | AT4G04450 | 33.929 | 112 | 71 | 2 | 94 | 204 | 262 | 371 | 2.83e-11 | 63.9 |
| MS.gene87693.t1 | AT4G39410 | 38.542 | 96 | 44 | 4 | 93 | 188 | 201 | 281 | 2.96e-11 | 63.2 |
| MS.gene87693.t1 | AT2G44745 | 41.667 | 84 | 42 | 3 | 98 | 180 | 122 | 199 | 3.69e-11 | 62.0 |
| MS.gene87693.t1 | AT4G18170 | 36.538 | 104 | 54 | 4 | 80 | 180 | 132 | 226 | 3.88e-11 | 63.2 |
| MS.gene87693.t1 | AT1G62300 | 44.595 | 74 | 38 | 2 | 108 | 180 | 296 | 367 | 5.31e-11 | 63.2 |
| MS.gene87693.t1 | AT1G29860 | 44.444 | 63 | 32 | 1 | 122 | 184 | 135 | 194 | 6.68e-11 | 62.0 |
Find 57 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGATTGATGAATTGTTAAA+AGG | 0.184934 | 7.1:+28930519 | MS.gene87693:CDS |
| GGTGATATTGATAACATTAA+TGG | 0.251913 | 7.1:+28930585 | MS.gene87693:CDS |
| TCCATTTCTCTCAGTGAAAA+AGG | 0.266907 | 7.1:+28932536 | MS.gene87693:CDS |
| TGCTTTGCAGGAACTATTAC+AGG | 0.282092 | 7.1:+28932304 | MS.gene87693:intron |
| GATTATTGTTCAAGAACAAT+AGG | 0.331883 | 7.1:-28930668 | None:intergenic |
| CAAGAGTACTTCCATTGTTA+AGG | 0.344618 | 7.1:+28930752 | MS.gene87693:CDS |
| CTTTACAAAACAACCTACTA+TGG | 0.350539 | 7.1:+28932396 | MS.gene87693:CDS |
| ACATCATCATACATGATATC+AGG | 0.372411 | 7.1:-28932693 | None:intergenic |
| TTTAAAAGATCTTCAGCAAC+TGG | 0.373083 | 7.1:-28930618 | None:intergenic |
| ATAAATATACCTTGGGAAAT+CGG | 0.385972 | 7.1:-28931911 | None:intergenic |
| CTCTAAAGAATCCTCAGATT+TGG | 0.392364 | 7.1:-28930721 | None:intergenic |
| TCTAATTAATTTCAAGAAAG+TGG | 0.395509 | 7.1:-28932726 | None:intergenic |
| GGTCATCAATGGAGAAAGTA+TGG | 0.401550 | 7.1:+28931868 | MS.gene87693:CDS |
| CTTGATTCTCATGATCAGTT+AGG | 0.404590 | 7.1:+28932660 | MS.gene87693:CDS |
| GGAGAATCCTCTATGATCTC+AGG | 0.407384 | 7.1:-28932447 | None:intergenic |
| CAGTCTTGTTTGGCTGGTGT+TGG | 0.412342 | 7.1:-28932513 | None:intergenic |
| ATTATTGTTCAAGAACAATA+GGG | 0.414455 | 7.1:-28930667 | None:intergenic |
| CCTTCAAATGATTACCTCTC+TGG | 0.419974 | 7.1:+28932591 | MS.gene87693:CDS |
| GAGAAATGGACAGTCTTGTT+TGG | 0.445787 | 7.1:-28932523 | None:intergenic |
| AGTCTTGTTTGGCTGGTGTT+GGG | 0.452762 | 7.1:-28932512 | None:intergenic |
| AGGTAATCATTTGAAGGAGG+AGG | 0.457187 | 7.1:-28932585 | None:intergenic |
| TTCAAGAAAGTGGCCAATTG+AGG | 0.469111 | 7.1:-28932716 | None:intergenic |
| CCAGAGAGGTAATCATTTGA+AGG | 0.470477 | 7.1:-28932591 | None:intergenic |
| TGATTGATGAATTGTTAAAA+GGG | 0.474553 | 7.1:+28930520 | MS.gene87693:CDS |
| CAGAAAAGTTTCACAAACAT+GGG | 0.477292 | 7.1:+28931816 | MS.gene87693:intron |
| AATGGACAGTCTTGTTTGGC+TGG | 0.477532 | 7.1:-28932519 | None:intergenic |
| AGAAATATTCTGAATGAAAG+TGG | 0.485810 | 7.1:+28930564 | MS.gene87693:CDS |
| TCAGAAAAGTTTCACAAACA+TGG | 0.494934 | 7.1:+28931815 | MS.gene87693:intron |
| CTAGCTCATGGTAGTGGTCG+TGG | 0.509082 | 7.1:+28930492 | MS.gene87693:CDS |
| ACAAGTGTGATGGCCATAGT+AGG | 0.510474 | 7.1:-28932409 | None:intergenic |
| AACAATAATCCTACTTCTGA+GGG | 0.511593 | 7.1:+28930681 | MS.gene87693:CDS |
| TCTGATCGTCCCGTGGAAGA+TGG | 0.520055 | 7.1:+28931847 | MS.gene87693:CDS |
| GAAAATCTAGCTCATGGTAG+TGG | 0.526481 | 7.1:+28930486 | MS.gene87693:CDS |
| CCGTGGAAGATGGTCATCAA+TGG | 0.528577 | 7.1:+28931857 | MS.gene87693:CDS |
| AGCTAAGGAACATGGAAGAC+TGG | 0.529377 | 7.1:-28932476 | None:intergenic |
| GTAGAGGCTGTTACAAAAGA+AGG | 0.531049 | 7.1:+28930778 | MS.gene87693:CDS |
| GTTGTCAAAGCTAAGGAACA+TGG | 0.540400 | 7.1:-28932484 | None:intergenic |
| TGTATGATGATGTCCTCAAT+TGG | 0.542759 | 7.1:+28932703 | MS.gene87693:CDS |
| AAATCAGAGCCCTCAGAAGT+AGG | 0.544337 | 7.1:-28930690 | None:intergenic |
| GAACAATAATCCTACTTCTG+AGG | 0.546015 | 7.1:+28930680 | MS.gene87693:CDS |
| GGAAAGAGTTGTCAAAGCTA+AGG | 0.561012 | 7.1:-28932491 | None:intergenic |
| TGCACTCACAAACATGATCA+AGG | 0.563442 | 7.1:+28932327 | MS.gene87693:CDS |
| GAGAATCCTCTATGATCTCA+GGG | 0.568526 | 7.1:-28932446 | None:intergenic |
| CCATTGATGACCATCTTCCA+CGG | 0.575191 | 7.1:-28931857 | None:intergenic |
| GCAAGATTCTACAAGTGTGA+TGG | 0.576779 | 7.1:-28932419 | None:intergenic |
| GCCTCTACGTTCCTTAACAA+TGG | 0.594370 | 7.1:-28930763 | None:intergenic |
| AGTTTCACAAACATGGGAGA+AGG | 0.598123 | 7.1:+28931822 | MS.gene87693:CDS |
| ACAAGTGCAACAAATTCAAG+AGG | 0.601952 | 7.1:+28932365 | MS.gene87693:CDS |
| AACATGGAAGACTGGTCACA+AGG | 0.611016 | 7.1:-28932468 | None:intergenic |
| CATTGATGACCATCTTCCAC+GGG | 0.612085 | 7.1:-28931856 | None:intergenic |
| TTTGCAACTCACCAAATCTG+AGG | 0.616026 | 7.1:+28930710 | MS.gene87693:CDS |
| TCTTGCACACCGATTTCCCA+AGG | 0.624999 | 7.1:+28931902 | MS.gene87693:CDS |
| GCAAAGCCCTGAGATCATAG+AGG | 0.632964 | 7.1:+28932440 | MS.gene87693:CDS |
| GAGAGGTAATCATTTGAAGG+AGG | 0.645608 | 7.1:-28932588 | None:intergenic |
| TCCATTGTTAAGGAACGTAG+AGG | 0.656442 | 7.1:+28930762 | MS.gene87693:CDS |
| GAAGGAGTCTGATCGTCCCG+TGG | 0.657169 | 7.1:+28931840 | MS.gene87693:CDS |
| CATCAAAAGTGAGTCCAGAG+AGG | 0.707648 | 7.1:-28932605 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAATAAAAAATGAGA+GGG | - | chr7.1:28931628-28931647 | None:intergenic | 10.0% |
| !! | AATGTATTTGGTTAAAAAAT+TGG | + | chr7.1:28931245-28931264 | MS.gene87693:intron | 15.0% |
| !! | CAAAATAAATAAAAAATGAG+AGG | - | chr7.1:28931629-28931648 | None:intergenic | 15.0% |
| !! | TTAATTTCTTTACATCTTAA+AGG | + | chr7.1:28932120-28932139 | MS.gene87693:intron | 15.0% |
| !! | AGTAAAAAAAGTTGAATATG+TGG | - | chr7.1:28930839-28930858 | None:intergenic | 20.0% |
| !! | ATATAGAATTATAGATGTGT+TGG | - | chr7.1:28930934-28930953 | None:intergenic | 20.0% |
| !! | ATATTACTCATATGTTGTAA+AGG | - | chr7.1:28931346-28931365 | None:intergenic | 20.0% |
| !! | ATGATGAACAATAATTGATA+GGG | - | chr7.1:28931555-28931574 | None:intergenic | 20.0% |
| !! | ATTATTGTTCAAGAACAATA+GGG | - | chr7.1:28930670-28930689 | None:intergenic | 20.0% |
| !! | ATTGTTCTTATAAATAGGAT+CGG | - | chr7.1:28931208-28931227 | None:intergenic | 20.0% |
| !! | CCAAAATTGTTCTTATAAAT+AGG | - | chr7.1:28931213-28931232 | None:intergenic | 20.0% |
| !! | CCTATTTATAAGAGAAATTT+GGG | - | chr7.1:28931295-28931314 | None:intergenic | 20.0% |
| !! | GACAATCTTAAAAGTAAAAT+GGG | - | chr7.1:28931958-28931977 | None:intergenic | 20.0% |
| !! | TACAACATATGAGTAATATT+GGG | + | chr7.1:28931347-28931366 | MS.gene87693:intron | 20.0% |
| !! | TATAGAATTATAGATGTGTT+GGG | - | chr7.1:28930933-28930952 | None:intergenic | 20.0% |
| !! | TATTAAGAAAGAAGAATTAG+AGG | - | chr7.1:28932246-28932265 | None:intergenic | 20.0% |
| !! | TCAACAAAAGTTAATGTATT+TGG | + | chr7.1:28931233-28931252 | MS.gene87693:intron | 20.0% |
| !! | TCCTATTTATAAGAGAAATT+TGG | - | chr7.1:28931296-28931315 | None:intergenic | 20.0% |
| !! | TGAAAAAGAATTGCATAATT+GGG | - | chr7.1:28931798-28931817 | None:intergenic | 20.0% |
| !! | TGACAATCTTAAAAGTAAAA+TGG | - | chr7.1:28931959-28931978 | None:intergenic | 20.0% |
| !! | TGATTGATGAATTGTTAAAA+GGG | + | chr7.1:28930520-28930539 | MS.gene87693:CDS | 20.0% |
| !! | TTACAACATATGAGTAATAT+TGG | + | chr7.1:28931346-28931365 | MS.gene87693:intron | 20.0% |
| !! | TTCAAATAGTGAAATTTGAT+TGG | - | chr7.1:28931988-28932007 | None:intergenic | 20.0% |
| !!! | AATTTTAGATGTATGAAAAG+TGG | - | chr7.1:28930957-28930976 | None:intergenic | 20.0% |
| !!! | CCTATTTATAAGAACAATTT+TGG | + | chr7.1:28931210-28931229 | MS.gene87693:intron | 20.0% |
| !!! | TAAAATGTTAAATGAGTTGA+AGG | + | chr7.1:28932167-28932186 | MS.gene87693:intron | 20.0% |
| !!! | TTATTTGAACTTTTAAGATG+AGG | + | chr7.1:28931123-28931142 | MS.gene87693:intron | 20.0% |
| !!! | TTGTTGTGTTTTTTTTTTTG+TGG | + | chr7.1:28931646-28931665 | MS.gene87693:intron | 20.0% |
| !!! | TTTTCCTTTTTTTTCTTCTT+CGG | + | chr7.1:28931027-28931046 | MS.gene87693:intron | 20.0% |
| !!! | TTTTGATGAGAGAAAATTAT+TGG | - | chr7.1:28931436-28931455 | None:intergenic | 20.0% |
| ! | AAACTCGTATAAATATACCT+TGG | - | chr7.1:28931922-28931941 | None:intergenic | 25.0% |
| ! | AACTCGTATAAATATACCTT+GGG | - | chr7.1:28931921-28931940 | None:intergenic | 25.0% |
| ! | ACAACATATGAGTAATATTG+GGG | + | chr7.1:28931348-28931367 | MS.gene87693:intron | 25.0% |
| ! | AGAAATATTCTGAATGAAAG+TGG | + | chr7.1:28930564-28930583 | MS.gene87693:CDS | 25.0% |
| ! | ATAAATATACCTTGGGAAAT+CGG | - | chr7.1:28931914-28931933 | None:intergenic | 25.0% |
| ! | ATAGTGAAATTTGATTGGAT+TGG | - | chr7.1:28931983-28932002 | None:intergenic | 25.0% |
| ! | ATTTCTCTTATAAATAGGAC+CGG | + | chr7.1:28931297-28931316 | MS.gene87693:intron | 25.0% |
| ! | CCCAAATTTCTCTTATAAAT+AGG | + | chr7.1:28931292-28931311 | MS.gene87693:intron | 25.0% |
| ! | CTGAAAAAGAATTGCATAAT+TGG | - | chr7.1:28931799-28931818 | None:intergenic | 25.0% |
| ! | GAAAAACCATAGGTTAAAAT+AGG | - | chr7.1:28930887-28930906 | None:intergenic | 25.0% |
| ! | GATGATGAACAATAATTGAT+AGG | - | chr7.1:28931556-28931575 | None:intergenic | 25.0% |
| ! | GATTATTGTTCAAGAACAAT+AGG | - | chr7.1:28930671-28930690 | None:intergenic | 25.0% |
| ! | GTGATTGATGAATTGTTAAA+AGG | + | chr7.1:28930519-28930538 | MS.gene87693:CDS | 25.0% |
| ! | TGAATATTTATATGCTTTGC+AGG | + | chr7.1:28932292-28932311 | MS.gene87693:intron | 25.0% |
| !! | AAAAATGAAAATCTAGCTCA+TGG | + | chr7.1:28930480-28930499 | MS.gene87693:CDS | 25.0% |
| !! | ATGAGAGAAAATTATTGGTT+AGG | - | chr7.1:28931431-28931450 | None:intergenic | 25.0% |
| !! | GGTGATATTGATAACATTAA+TGG | + | chr7.1:28930585-28930604 | MS.gene87693:CDS | 25.0% |
| !! | TTTCATAGTCTTACATTGAT+TGG | + | chr7.1:28931738-28931757 | MS.gene87693:intron | 25.0% |
| !! | TTTTTCATACACACTATTCA+TGG | + | chr7.1:28930901-28930920 | MS.gene87693:intron | 25.0% |
| !!! | GATTGGTTTTGAGTTTTTTT+TGG | + | chr7.1:28931755-28931774 | MS.gene87693:intron | 25.0% |
| AACAATAATCCTACTTCTGA+GGG | + | chr7.1:28930681-28930700 | MS.gene87693:CDS | 30.0% | |
| AATTGATAGGGTCCAATATT+AGG | - | chr7.1:28931543-28931562 | None:intergenic | 30.0% | |
| ACATCATCATACATGATATC+AGG | - | chr7.1:28932696-28932715 | None:intergenic | 30.0% | |
| ATTGATAGGGTCCAATATTA+GGG | - | chr7.1:28931542-28931561 | None:intergenic | 30.0% | |
| CAGAAAAGTTTCACAAACAT+GGG | + | chr7.1:28931816-28931835 | MS.gene87693:intron | 30.0% | |
| CTTTACAAAACAACCTACTA+TGG | + | chr7.1:28932396-28932415 | MS.gene87693:CDS | 30.0% | |
| CTTTCCGAAGAAGAAAAAAA+AGG | - | chr7.1:28931034-28931053 | None:intergenic | 30.0% | |
| TAGTGTGTATGAAAAACCAT+AGG | - | chr7.1:28930897-28930916 | None:intergenic | 30.0% | |
| TCAGAAAAGTTTCACAAACA+TGG | + | chr7.1:28931815-28931834 | MS.gene87693:intron | 30.0% | |
| TTCTTATAAATAGGATCGGT+GGG | - | chr7.1:28931204-28931223 | None:intergenic | 30.0% | |
| TTTAAAAGATCTTCAGCAAC+TGG | - | chr7.1:28930621-28930640 | None:intergenic | 30.0% | |
| ! | AGTTGCTGAAGATCTTTTAA+AGG | + | chr7.1:28930620-28930639 | MS.gene87693:CDS | 30.0% |
| ! | GTTGTTTCCTCTAGTTATTA+TGG | + | chr7.1:28931684-28931703 | MS.gene87693:intron | 30.0% |
| ! | TCCTCTAGTTATTATGGTTT+TGG | + | chr7.1:28931690-28931709 | MS.gene87693:intron | 30.0% |
| !! | GTGACTTTAGTGTATTTTAG+AGG | - | chr7.1:28931494-28931513 | None:intergenic | 30.0% |
| !! | TAGTAGGTTGTTTTGTAAAG+AGG | - | chr7.1:28932396-28932415 | None:intergenic | 30.0% |
| !!! | AGTTGACCTATTTTAACCTA+TGG | + | chr7.1:28930878-28930897 | MS.gene87693:intron | 30.0% |
| ACAAGTGCAACAAATTCAAG+AGG | + | chr7.1:28932365-28932384 | MS.gene87693:CDS | 35.0% | |
| ACATATGAGTAATATTGGGG+TGG | + | chr7.1:28931351-28931370 | MS.gene87693:intron | 35.0% | |
| ATATGAGTAATATTGGGGTG+GGG | + | chr7.1:28931353-28931372 | MS.gene87693:intron | 35.0% | |
| ATTTCTCTCAGTGAAAAAGG+AGG | + | chr7.1:28932539-28932558 | MS.gene87693:CDS | 35.0% | |
| CATATGAGTAATATTGGGGT+GGG | + | chr7.1:28931352-28931371 | MS.gene87693:intron | 35.0% | |
| CTTGATTCTCATGATCAGTT+AGG | + | chr7.1:28932660-28932679 | MS.gene87693:CDS | 35.0% | |
| GAACAATAATCCTACTTCTG+AGG | + | chr7.1:28930680-28930699 | MS.gene87693:CDS | 35.0% | |
| GCCAAAACCATAATAACTAG+AGG | - | chr7.1:28931694-28931713 | None:intergenic | 35.0% | |
| GTTCTTATAAATAGGATCGG+TGG | - | chr7.1:28931205-28931224 | None:intergenic | 35.0% | |
| TATCCACTACATGTGATGAA+AGG | + | chr7.1:28931586-28931605 | MS.gene87693:intron | 35.0% | |
| TCCATTTCTCTCAGTGAAAA+AGG | + | chr7.1:28932536-28932555 | MS.gene87693:CDS | 35.0% | |
| ! | CTCTAAAGAATCCTCAGATT+TGG | - | chr7.1:28930724-28930743 | None:intergenic | 35.0% |
| ! | TGTATGATGATGTCCTCAAT+TGG | + | chr7.1:28932703-28932722 | MS.gene87693:CDS | 35.0% |
| !! | CAAGAGTACTTCCATTGTTA+AGG | + | chr7.1:28930752-28930771 | MS.gene87693:CDS | 35.0% |
| !! | CACTTTTGATGATCCAGAAA+AGG | + | chr7.1:28932617-28932636 | MS.gene87693:CDS | 35.0% |
| !! | TAGGTTGTTTTGTAAAGAGG+TGG | - | chr7.1:28932393-28932412 | None:intergenic | 35.0% |
| !! | TCCTTTTTCACTGAGAGAAA+TGG | - | chr7.1:28932540-28932559 | None:intergenic | 35.0% |
| AGGTAATCATTTGAAGGAGG+AGG | - | chr7.1:28932588-28932607 | None:intergenic | 40.0% | |
| AGTCCTTTCATCACATGTAG+TGG | - | chr7.1:28931592-28931611 | None:intergenic | 40.0% | |
| AGTGAAAAAGGAGGATTGCA+AGG | + | chr7.1:28932548-28932567 | MS.gene87693:CDS | 40.0% | |
| AGTTTCACAAACATGGGAGA+AGG | + | chr7.1:28931822-28931841 | MS.gene87693:CDS | 40.0% | |
| ATAGGGTCCAATATTAGGGT+GGG | - | chr7.1:28931538-28931557 | None:intergenic | 40.0% | |
| CCAATAATAAGTACTCCCTC+CGG | - | chr7.1:28931319-28931338 | None:intergenic | 40.0% | |
| CCAGAGAGGTAATCATTTGA+AGG | - | chr7.1:28932594-28932613 | None:intergenic | 40.0% | |
| CCTTCAAATGATTACCTCTC+TGG | + | chr7.1:28932591-28932610 | MS.gene87693:CDS | 40.0% | |
| CTCTTATAAATAGGACCGGA+GGG | + | chr7.1:28931301-28931320 | MS.gene87693:intron | 40.0% | |
| GAGAATCCTCTATGATCTCA+GGG | - | chr7.1:28932449-28932468 | None:intergenic | 40.0% | |
| GAGAGGTAATCATTTGAAGG+AGG | - | chr7.1:28932591-28932610 | None:intergenic | 40.0% | |
| GCAAGATTCTACAAGTGTGA+TGG | - | chr7.1:28932422-28932441 | None:intergenic | 40.0% | |
| GGAAAGAGTTGTCAAAGCTA+AGG | - | chr7.1:28932494-28932513 | None:intergenic | 40.0% | |
| GGTCATCAATGGAGAAAGTA+TGG | + | chr7.1:28931868-28931887 | MS.gene87693:CDS | 40.0% | |
| GTAGAGGCTGTTACAAAAGA+AGG | + | chr7.1:28930778-28930797 | MS.gene87693:CDS | 40.0% | |
| GTTGTCAAAGCTAAGGAACA+TGG | - | chr7.1:28932487-28932506 | None:intergenic | 40.0% | |
| TCCATTGTTAAGGAACGTAG+AGG | + | chr7.1:28930762-28930781 | MS.gene87693:CDS | 40.0% | |
| TCTCTTATAAATAGGACCGG+AGG | + | chr7.1:28931300-28931319 | MS.gene87693:intron | 40.0% | |
| TGCACTCACAAACATGATCA+AGG | + | chr7.1:28932327-28932346 | MS.gene87693:CDS | 40.0% | |
| TGCTTTGCAGGAACTATTAC+AGG | + | chr7.1:28932304-28932323 | MS.gene87693:intron | 40.0% | |
| TTTGCAACTCACCAAATCTG+AGG | + | chr7.1:28930710-28930729 | MS.gene87693:CDS | 40.0% | |
| ! | GAAAATCTAGCTCATGGTAG+TGG | + | chr7.1:28930486-28930505 | MS.gene87693:CDS | 40.0% |
| ! | GATAGTGTGACATCCTTTTC+TGG | - | chr7.1:28932633-28932652 | None:intergenic | 40.0% |
| ! | GGAGAAAGTATGGCCAAAAA+AGG | + | chr7.1:28931878-28931897 | MS.gene87693:CDS | 40.0% |
| ! | GGCTTTAGTGACTTTGTGTT+GGG | - | chr7.1:28931516-28931535 | None:intergenic | 40.0% |
| !! | ATAGAGACAAAAGCACCGAA+AGG | - | chr7.1:28931402-28931421 | None:intergenic | 40.0% |
| !! | GAGAAATGGACAGTCTTGTT+TGG | - | chr7.1:28932526-28932545 | None:intergenic | 40.0% |
| AAATCAGAGCCCTCAGAAGT+AGG | - | chr7.1:28930693-28930712 | None:intergenic | 45.0% | |
| ACAAGTGTGATGGCCATAGT+AGG | - | chr7.1:28932412-28932431 | None:intergenic | 45.0% | |
| AGCTAAGGAACATGGAAGAC+TGG | - | chr7.1:28932479-28932498 | None:intergenic | 45.0% | |
| CATCAAAAGTGAGTCCAGAG+AGG | - | chr7.1:28932608-28932627 | None:intergenic | 45.0% | |
| CTAAAGCCCCACCCTAATAT+TGG | + | chr7.1:28931528-28931547 | MS.gene87693:intron | 45.0% | |
| GATAGGGTCCAATATTAGGG+TGG | - | chr7.1:28931539-28931558 | None:intergenic | 45.0% | |
| GCCTCTACGTTCCTTAACAA+TGG | - | chr7.1:28930766-28930785 | None:intergenic | 45.0% | |
| GGAGAATCCTCTATGATCTC+AGG | - | chr7.1:28932450-28932469 | None:intergenic | 45.0% | |
| TAGGGTCCAATATTAGGGTG+GGG | - | chr7.1:28931537-28931556 | None:intergenic | 45.0% | |
| ! | AACATGGAAGACTGGTCACA+AGG | - | chr7.1:28932471-28932490 | None:intergenic | 45.0% |
| ! | CATTGATGACCATCTTCCAC+GGG | - | chr7.1:28931859-28931878 | None:intergenic | 45.0% |
| ! | CCATTGATGACCATCTTCCA+CGG | - | chr7.1:28931860-28931879 | None:intergenic | 45.0% |
| ! | GGGCTTTAGTGACTTTGTGT+TGG | - | chr7.1:28931517-28931536 | None:intergenic | 45.0% |
| !! | AATGGACAGTCTTGTTTGGC+TGG | - | chr7.1:28932522-28932541 | None:intergenic | 45.0% |
| !! | AGTCTTGTTTGGCTGGTGTT+GGG | - | chr7.1:28932515-28932534 | None:intergenic | 45.0% |
| !! | CCGGAGGGAGTACTTATTAT+TGG | + | chr7.1:28931316-28931335 | MS.gene87693:intron | 45.0% |
| !!! | CGGTGTGCAAGATCCTTTTT+TGG | - | chr7.1:28931894-28931913 | None:intergenic | 45.0% |
| CCGTGGAAGATGGTCATCAA+TGG | + | chr7.1:28931857-28931876 | MS.gene87693:CDS | 50.0% | |
| GCAAAGCCCTGAGATCATAG+AGG | + | chr7.1:28932440-28932459 | MS.gene87693:CDS | 50.0% | |
| !! | ACTTTGGCTTCGGTGCCTTT+CGG | + | chr7.1:28931384-28931403 | MS.gene87693:intron | 50.0% |
| !! | CAGTCTTGTTTGGCTGGTGT+TGG | - | chr7.1:28932516-28932535 | None:intergenic | 50.0% |
| !! | TCTTGCACACCGATTTCCCA+AGG | + | chr7.1:28931902-28931921 | MS.gene87693:CDS | 50.0% |
| TCTGATCGTCCCGTGGAAGA+TGG | + | chr7.1:28931847-28931866 | MS.gene87693:CDS | 55.0% | |
| ! | GGCTTCCGTGACTTTGGCTT+CGG | + | chr7.1:28931374-28931393 | MS.gene87693:intron | 55.0% |
| !! | AGGCACCGAAGCCAAAGTCA+CGG | - | chr7.1:28931382-28931401 | None:intergenic | 55.0% |
| !! | CTAGCTCATGGTAGTGGTCG+TGG | + | chr7.1:28930492-28930511 | MS.gene87693:CDS | 55.0% |
| GAAGGAGTCTGATCGTCCCG+TGG | + | chr7.1:28931840-28931859 | MS.gene87693:CDS | 60.0% | |
| GGGTGGGGCTTCCGTGACTT+TGG | + | chr7.1:28931368-28931387 | MS.gene87693:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 28930477 | 28932737 | 28930477 | ID=MS.gene87693 |
| chr7.1 | mRNA | 28930477 | 28932737 | 28930477 | ID=MS.gene87693.t1;Parent=MS.gene87693 |
| chr7.1 | exon | 28930477 | 28930799 | 28930477 | ID=MS.gene87693.t1.exon1;Parent=MS.gene87693.t1 |
| chr7.1 | CDS | 28930477 | 28930799 | 28930477 | ID=cds.MS.gene87693.t1;Parent=MS.gene87693.t1 |
| chr7.1 | exon | 28931819 | 28931923 | 28931819 | ID=MS.gene87693.t1.exon2;Parent=MS.gene87693.t1 |
| chr7.1 | CDS | 28931819 | 28931923 | 28931819 | ID=cds.MS.gene87693.t1;Parent=MS.gene87693.t1 |
| chr7.1 | exon | 28932314 | 28932737 | 28932314 | ID=MS.gene87693.t1.exon3;Parent=MS.gene87693.t1 |
| chr7.1 | CDS | 28932314 | 28932737 | 28932314 | ID=cds.MS.gene87693.t1;Parent=MS.gene87693.t1 |
| Gene Sequence |
| Protein sequence |
