AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene87882

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87882.t1 MTR_2g445230 97.561 287 7 0 1 287 1 287 0.0 566
MS.gene87882.t1 MTR_4g124560 30.769 273 161 7 11 280 93 340 2.05e-26 106
MS.gene87882.t1 MTR_4g024850 28.148 270 156 7 20 276 90 334 1.55e-22 95.9
MS.gene87882.t1 MTR_2g093050 30.466 279 148 9 26 281 91 346 4.14e-22 95.5
MS.gene87882.t1 MTR_4g111780 28.148 270 156 8 20 276 90 334 9.25e-22 93.6
MS.gene87882.t1 MTR_1g102670 33.333 183 106 4 18 197 87 256 3.23e-17 80.5
MS.gene87882.t1 MTR_4g062540 28.631 241 134 9 8 242 78 286 3.91e-12 65.9
MS.gene87882.t1 MTR_4g062540 28.689 244 137 9 8 242 78 293 6.29e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87882.t1 AT5G57450 51.220 287 117 5 16 280 18 303 2.61e-94 281
MS.gene87882.t1 AT5G57450 51.220 287 117 5 16 280 18 303 2.61e-94 281
MS.gene87882.t1 AT5G20850 32.000 275 159 8 3 276 90 337 1.61e-26 106
MS.gene87882.t1 AT5G20850 34.500 200 118 5 3 201 90 277 4.60e-22 94.4
MS.gene87882.t1 AT3G22880 30.534 262 150 7 18 276 107 339 2.27e-21 92.8
MS.gene87882.t1 AT2G45280 27.888 251 142 7 5 239 92 319 3.95e-21 92.0
MS.gene87882.t1 AT2G45280 27.888 251 142 7 5 239 116 343 4.84e-21 92.0
MS.gene87882.t1 AT3G22880 30.279 251 143 7 18 265 107 328 2.50e-19 86.7
MS.gene87882.t1 AT2G28560 29.545 264 155 8 26 276 59 304 7.27e-19 85.5
MS.gene87882.t1 AT2G28560 29.545 264 155 8 26 276 91 336 9.14e-19 85.5
MS.gene87882.t1 AT2G28560 29.545 264 155 8 26 276 91 336 9.14e-19 85.5
MS.gene87882.t1 AT2G28560 29.545 264 155 8 26 276 91 336 9.14e-19 85.5
MS.gene87882.t1 AT2G28560 29.545 264 155 8 26 276 91 336 1.29e-18 85.1
MS.gene87882.t1 AT1G07745 31.250 240 133 7 8 243 60 271 1.95e-18 84.0
MS.gene87882.t1 AT1G07745 31.250 240 133 7 8 243 78 289 2.83e-18 83.6
MS.gene87882.t1 AT2G28560 33.333 177 100 5 26 196 59 223 3.34e-15 73.9
MS.gene87882.t1 AT1G07745 35.099 151 84 5 8 154 60 200 1.15e-13 68.9
MS.gene87882.t1 AT1G07745 35.099 151 84 5 8 154 78 218 3.28e-13 68.2
MS.gene87882.t1 AT1G07745 35.099 151 84 5 8 154 78 218 3.28e-13 68.2

Find 92 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAGGAAATTGAGAACATTT+AGG 0.234968 2.4:+36732185 MS.gene87882:CDS
TAGGAAATTGAGAACATTTA+GGG 0.270441 2.4:+36732186 MS.gene87882:CDS
TTCTTGTCGAGGGAGGAATT+TGG 0.275226 2.4:+36732154 MS.gene87882:CDS
TCTTGTCGAGGGAGGAATTT+GGG 0.281757 2.4:+36732155 MS.gene87882:CDS
TAGAAGGGTTTCTCCTGCTT+TGG 0.284357 2.4:+36732096 MS.gene87882:CDS
AGGAATTTGGGGAGGGTAGT+AGG 0.294515 2.4:+36732167 MS.gene87882:CDS
AGAAGGGTTTCTCCTGCTTT+GGG 0.302117 2.4:+36732097 MS.gene87882:CDS
GGACGAGTTGAAGGCAGATT+TGG 0.303480 2.4:-36731595 None:intergenic
TGTTCTGAGTTTGTTATTAC+AGG 0.329349 2.4:+36732238 MS.gene87882:CDS
AAACGTTGGCGGAGAGGTTT+GGG 0.342466 2.4:+36731981 MS.gene87882:CDS
AAAACGTTGGCGGAGAGGTT+TGG 0.344119 2.4:+36731980 MS.gene87882:CDS
TCCTGCTTTGGGTTTGTCAT+GGG 0.345513 2.4:+36732108 MS.gene87882:CDS
ACTTGTATTCCTCGGGTAGA+AGG 0.352847 2.4:+36732080 MS.gene87882:CDS
CTCCTGCTTTGGGTTTGTCA+TGG 0.358577 2.4:+36732107 MS.gene87882:CDS
AGAATGAAGGTCTGAGGATT+GGG 0.369884 2.4:+36732047 MS.gene87882:CDS
GGTTGTGGTTGTTACAAATC+AGG 0.380826 2.4:+36732006 MS.gene87882:CDS
GACGAGTTGAAGGCAGATTT+GGG 0.382407 2.4:-36731594 None:intergenic
TCCGCTTTCGGCGACGAGTT+CGG 0.394080 2.4:-36731561 None:intergenic
ACAACCTACGCTGCATTTCT+CGG 0.395622 2.4:-36731489 None:intergenic
GATTCTAGAATTCACACAAT+TGG 0.404454 2.4:-36732131 None:intergenic
TCAACTACGATAACTCTAAC+AGG 0.405318 2.4:-36731863 None:intergenic
GGAGAGGTTTGGGTTGGTTG+TGG 0.408109 2.4:+36731991 MS.gene87882:CDS
GCGGATGGGGAAAGGGTATT+CGG 0.409787 2.4:-36731678 None:intergenic
GAGTTGTTTGAGGCGGCGGA+TGG 0.425263 2.4:-36731693 None:intergenic
GAGAATGAAGGTCTGAGGAT+TGG 0.442692 2.4:+36732046 MS.gene87882:CDS
GCGGAGAGGCCGCCGTGGGA+GGG 0.444564 2.4:-36731635 None:intergenic
TGAATTTGAAAACTCTATGT+TGG 0.454312 2.4:+36731910 MS.gene87882:CDS
GCGAGGCAGCGATCAAGAAC+GGG 0.454625 2.4:-36731512 None:intergenic
CTCGTCGCCGAAAGCGGAAG+CGG 0.460895 2.4:+36731566 MS.gene87882:CDS
TTGAGGCGGCGGATGGGGAA+AGG 0.465846 2.4:-36731686 None:intergenic
GAGAGGGTCAGTTCCCAGTC+CGG 0.478566 2.4:-36731741 None:intergenic
GTGAGTAAAATCTCAATGTC+AGG 0.480727 2.4:-36731818 None:intergenic
GTTGTTTGAGGCGGCGGATG+GGG 0.483903 2.4:-36731691 None:intergenic
TGAGGCGGCGGATGGGGAAA+GGG 0.485959 2.4:-36731685 None:intergenic
AGTTGTTTGAGGCGGCGGAT+GGG 0.487558 2.4:-36731692 None:intergenic
GAGCCATGAGGACGAGTTGA+AGG 0.488743 2.4:-36731604 None:intergenic
GGGAGAGTTGTTTGAGGCGG+CGG 0.494929 2.4:-36731697 None:intergenic
TTCTAGAATCTTCTTGTCGA+GGG 0.500424 2.4:+36732144 MS.gene87882:CDS
TCAGGTAGTTGATTTGATTG+AGG 0.500515 2.4:+36732024 MS.gene87882:CDS
CCTCTCATCTAATCCCGGAC+TGG 0.500621 2.4:+36731727 MS.gene87882:CDS
GAGAGGCCGCCGTGGGAGGG+TGG 0.504686 2.4:-36731632 None:intergenic
CTCTCATCTAATCCCGGACT+GGG 0.507437 2.4:+36731728 MS.gene87882:CDS
CTTGTATTCCTCGGGTAGAA+GGG 0.514483 2.4:+36732081 MS.gene87882:CDS
TTTAGTGACTTGTATTCCTC+GGG 0.514857 2.4:+36732073 MS.gene87882:CDS
GGCGAGGCAGCGATCAAGAA+CGG 0.516398 2.4:-36731513 None:intergenic
AGAGGGTCAGTTCCCAGTCC+GGG 0.524083 2.4:-36731740 None:intergenic
TGGTGGCTTGAAAACGTTGG+CGG 0.526981 2.4:+36731970 MS.gene87882:CDS
GCCCATGACAAACCCAAAGC+AGG 0.529237 2.4:-36732109 None:intergenic
CTTGTCGAGGGAGGAATTTG+GGG 0.532305 2.4:+36732156 MS.gene87882:CDS
GATTTGATTGAGGAGAATGA+AGG 0.533385 2.4:+36732034 MS.gene87882:CDS
CTGCCTTCAACTCGTCCTCA+TGG 0.538340 2.4:+36731601 MS.gene87882:CDS
ACCGAACTCGTCGCCGAAAG+CGG 0.541419 2.4:+36731560 MS.gene87882:CDS
TTGGTGTAGAGATGGGTCAA+AGG 0.545664 2.4:+36732272 MS.gene87882:CDS
GAGTTTGTTATTACAGGTGA+AGG 0.546187 2.4:+36732244 MS.gene87882:CDS
TCTTTCCTCTCATCTAATCC+CGG 0.550097 2.4:+36731722 MS.gene87882:CDS
GAACAACATTGAGGTAAATG+AGG 0.557737 2.4:-36732220 None:intergenic
AGCGGAGAGGCCGCCGTGGG+AGG 0.563631 2.4:-36731636 None:intergenic
TTGTGGGGATGCCGCCGGCG+AGG 0.565361 2.4:-36731529 None:intergenic
GTTGGCGGAGAGGTTTGGGT+TGG 0.566051 2.4:+36731985 MS.gene87882:CDS
GTTCTTGATCGCTGCCTCGC+CGG 0.566580 2.4:+36731515 MS.gene87882:CDS
TTGAGGAGAATGAAGGTCTG+AGG 0.572056 2.4:+36732041 MS.gene87882:CDS
GGAGGAAAACGCGGTCGAGA+GGG 0.580748 2.4:-36731757 None:intergenic
TTCTGGTGGCTTGAAAACGT+TGG 0.580761 2.4:+36731967 MS.gene87882:CDS
ATTAGATGAGAGGAAAGAGC+GGG 0.597816 2.4:-36731717 None:intergenic
ATTCTAGAATCTTCTTGTCG+AGG 0.599564 2.4:+36732143 MS.gene87882:CDS
AGCGGGAGAGTTGTTTGAGG+CGG 0.599613 2.4:-36731700 None:intergenic
AAGAGCGGGAGAGTTGTTTG+AGG 0.600193 2.4:-36731703 None:intergenic
TACTCACTTACTGGAAATCG+AGG 0.601914 2.4:+36731834 MS.gene87882:CDS
GCTTGAAAACGTTGGCGGAG+AGG 0.602170 2.4:+36731975 MS.gene87882:CDS
GCTCAGCTTCCACCCTCCCA+CGG 0.602814 2.4:+36731623 MS.gene87882:CDS
CGGAGGAAAACGCGGTCGAG+AGG 0.605398 2.4:-36731758 None:intergenic
GTCGAGGGAGGAATTTGGGG+AGG 0.605528 2.4:+36732159 MS.gene87882:CDS
TAGAATCTTCTTGTCGAGGG+AGG 0.607196 2.4:+36732147 MS.gene87882:CDS
CCAGTCCGGGATTAGATGAG+AGG 0.614842 2.4:-36731727 None:intergenic
ATGAAGCGGAGAGGCCGCCG+TGG 0.621821 2.4:-36731640 None:intergenic
TGAAGCGGAGAGGCCGCCGT+GGG 0.625174 2.4:-36731639 None:intergenic
CTTGATCGCTGCCTCGCCGG+CGG 0.631545 2.4:+36731518 MS.gene87882:CDS
GTAGAGATGGGTCAAAGGAA+TGG 0.632565 2.4:+36732277 MS.gene87882:CDS
AAAACCGAGAAATGCAGCGT+AGG 0.635039 2.4:+36731485 MS.gene87882:CDS
TCGAGGGAGGAATTTGGGGA+GGG 0.635636 2.4:+36732160 MS.gene87882:CDS
ACAAACTCAGAACAACATTG+AGG 0.651504 2.4:-36732229 None:intergenic
GATTAGATGAGAGGAAAGAG+CGG 0.651758 2.4:-36731718 None:intergenic
GAATATGTAGAGTGATGAAG+CGG 0.655313 2.4:-36731654 None:intergenic
AGGAGAAACCCTTCTACCCG+AGG 0.678505 2.4:-36732089 None:intergenic
CCTCCGCGGAATTTACTCTG+CGG 0.689572 2.4:+36731775 MS.gene87882:CDS
TGTAGAGTGATGAAGCGGAG+AGG 0.704294 2.4:-36731649 None:intergenic
CCGCAGAGTAAATTCCGCGG+AGG 0.709414 2.4:-36731775 None:intergenic
AAATTCCGCGGAGGAAAACG+CGG 0.710936 2.4:-36731766 None:intergenic
AGGGTGGAAGCTGAGCCATG+AGG 0.722612 2.4:-36731616 None:intergenic
TCTCCGCAGAGTAAATTCCG+CGG 0.737709 2.4:-36731778 None:intergenic
CAATAGCGAGATGAGCACAG+CGG 0.759325 2.4:+36731433 None:intergenic
CAGCTTCCACCCTCCCACGG+CGG 0.761661 2.4:+36731626 MS.gene87882:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TAGGAAATTGAGAACATTTA+GGG + chr2.4:36732186-36732205 MS.gene87882:CDS 25.0%
! TGAATTTGAAAACTCTATGT+TGG + chr2.4:36731910-36731929 MS.gene87882:CDS 25.0%
ACCAGAAATCTTGAAAAACA+AGG - chr2.4:36731954-36731973 None:intergenic 30.0%
GTAGGAAATTGAGAACATTT+AGG + chr2.4:36732185-36732204 MS.gene87882:CDS 30.0%
! TTGAGATTTTACTCACTTAC+TGG + chr2.4:36731825-36731844 MS.gene87882:CDS 30.0%
!! GATTCTAGAATTCACACAAT+TGG - chr2.4:36732134-36732153 None:intergenic 30.0%
!! TGTTCTGAGTTTGTTATTAC+AGG + chr2.4:36732238-36732257 MS.gene87882:CDS 30.0%
!! TTTTAGTGACTTGTATTCCT+CGG + chr2.4:36732072-36732091 MS.gene87882:CDS 30.0%
!!! TCCTTGTTTTTCAAGATTTC+TGG + chr2.4:36731950-36731969 MS.gene87882:CDS 30.0%
!!! TTGTTTTTCAAGATTTCTGG+TGG + chr2.4:36731953-36731972 MS.gene87882:CDS 30.0%
ACAAACTCAGAACAACATTG+AGG - chr2.4:36732232-36732251 None:intergenic 35.0%
GAACAACATTGAGGTAAATG+AGG - chr2.4:36732223-36732242 None:intergenic 35.0%
GAATATGTAGAGTGATGAAG+CGG - chr2.4:36731657-36731676 None:intergenic 35.0%
GATTTGATTGAGGAGAATGA+AGG + chr2.4:36732034-36732053 MS.gene87882:CDS 35.0%
GTGAGTAAAATCTCAATGTC+AGG - chr2.4:36731821-36731840 None:intergenic 35.0%
TCAACTACGATAACTCTAAC+AGG - chr2.4:36731866-36731885 None:intergenic 35.0%
! TTTAGTGACTTGTATTCCTC+GGG + chr2.4:36732073-36732092 MS.gene87882:CDS 35.0%
!! ATTCTAGAATCTTCTTGTCG+AGG + chr2.4:36732143-36732162 MS.gene87882:CDS 35.0%
!! GAGTTTGTTATTACAGGTGA+AGG + chr2.4:36732244-36732263 MS.gene87882:CDS 35.0%
!! TCAGGTAGTTGATTTGATTG+AGG + chr2.4:36732024-36732043 MS.gene87882:CDS 35.0%
!! TTCTAGAATCTTCTTGTCGA+GGG + chr2.4:36732144-36732163 MS.gene87882:CDS 35.0%
!!! ATTACAGGTGAAGGTGTTTT+TGG + chr2.4:36732253-36732272 MS.gene87882:CDS 35.0%
AGAATGAAGGTCTGAGGATT+GGG + chr2.4:36732047-36732066 MS.gene87882:CDS 40.0%
ATTAGATGAGAGGAAAGAGC+GGG - chr2.4:36731720-36731739 None:intergenic 40.0%
GATTAGATGAGAGGAAAGAG+CGG - chr2.4:36731721-36731740 None:intergenic 40.0%
GGTTGTGGTTGTTACAAATC+AGG + chr2.4:36732006-36732025 MS.gene87882:CDS 40.0%
TACTCACTTACTGGAAATCG+AGG + chr2.4:36731834-36731853 MS.gene87882:CDS 40.0%
TCTTTCCTCTCATCTAATCC+CGG + chr2.4:36731722-36731741 MS.gene87882:CDS 40.0%
!!! AGGTGTTTTTGGTGTAGAGA+TGG + chr2.4:36732264-36732283 MS.gene87882:CDS 40.0%
!!! AGTTCGGTCACTGATTTTGT+GGG - chr2.4:36731548-36731567 None:intergenic 40.0%
!!! GGTGTTTTTGGTGTAGAGAT+GGG + chr2.4:36732265-36732284 MS.gene87882:CDS 40.0%
!!! TGCATTTCTCGGTTTTTTGG+TGG - chr2.4:36731481-36731500 None:intergenic 40.0%
AAAACCGAGAAATGCAGCGT+AGG + chr2.4:36731485-36731504 MS.gene87882:CDS 45.0%
ACAACCTACGCTGCATTTCT+CGG - chr2.4:36731492-36731511 None:intergenic 45.0%
ACTTGTATTCCTCGGGTAGA+AGG + chr2.4:36732080-36732099 MS.gene87882:CDS 45.0%
AGAAGGGTTTCTCCTGCTTT+GGG + chr2.4:36732097-36732116 MS.gene87882:CDS 45.0%
CTTGTATTCCTCGGGTAGAA+GGG + chr2.4:36732081-36732100 MS.gene87882:CDS 45.0%
GAGAATGAAGGTCTGAGGAT+TGG + chr2.4:36732046-36732065 MS.gene87882:CDS 45.0%
GTAGAGATGGGTCAAAGGAA+TGG + chr2.4:36732277-36732296 MS.gene87882:CDS 45.0%
TAGAAGGGTTTCTCCTGCTT+TGG + chr2.4:36732096-36732115 MS.gene87882:CDS 45.0%
TAGAATCTTCTTGTCGAGGG+AGG + chr2.4:36732147-36732166 MS.gene87882:CDS 45.0%
TCTTGTCGAGGGAGGAATTT+GGG + chr2.4:36732155-36732174 MS.gene87882:CDS 45.0%
TTCTGGTGGCTTGAAAACGT+TGG + chr2.4:36731967-36731986 MS.gene87882:CDS 45.0%
TTCTTGTCGAGGGAGGAATT+TGG + chr2.4:36732154-36732173 MS.gene87882:CDS 45.0%
TTGAGGAGAATGAAGGTCTG+AGG + chr2.4:36732041-36732060 MS.gene87882:CDS 45.0%
TTGGTGTAGAGATGGGTCAA+AGG + chr2.4:36732272-36732291 MS.gene87882:CDS 45.0%
! GACGAGTTGAAGGCAGATTT+GGG - chr2.4:36731597-36731616 None:intergenic 45.0%
! TCCTGCTTTGGGTTTGTCAT+GGG + chr2.4:36732108-36732127 MS.gene87882:CDS 45.0%
!!! CGCTGCATTTCTCGGTTTTT+TGG - chr2.4:36731484-36731503 None:intergenic 45.0%
!!! GAGTTCGGTCACTGATTTTG+TGG - chr2.4:36731549-36731568 None:intergenic 45.0%
!!! GTTCGGTCACTGATTTTGTG+GGG - chr2.4:36731547-36731566 None:intergenic 45.0%
AAAACGTTGGCGGAGAGGTT+TGG + chr2.4:36731980-36731999 MS.gene87882:CDS 50.0%
AAACGTTGGCGGAGAGGTTT+GGG + chr2.4:36731981-36732000 MS.gene87882:CDS 50.0%
AAATTCCGCGGAGGAAAACG+CGG - chr2.4:36731769-36731788 None:intergenic 50.0%
AAGAGCGGGAGAGTTGTTTG+AGG - chr2.4:36731706-36731725 None:intergenic 50.0%
AGGAATTTGGGGAGGGTAGT+AGG + chr2.4:36732167-36732186 MS.gene87882:CDS 50.0%
CTCTCATCTAATCCCGGACT+GGG + chr2.4:36731728-36731747 MS.gene87882:CDS 50.0%
CTTGTCGAGGGAGGAATTTG+GGG + chr2.4:36732156-36732175 MS.gene87882:CDS 50.0%
TCTCCGCAGAGTAAATTCCG+CGG - chr2.4:36731781-36731800 None:intergenic 50.0%
TGGTGGCTTGAAAACGTTGG+CGG + chr2.4:36731970-36731989 MS.gene87882:CDS 50.0%
TGTAGAGTGATGAAGCGGAG+AGG - chr2.4:36731652-36731671 None:intergenic 50.0%
! CTCCTGCTTTGGGTTTGTCA+TGG + chr2.4:36732107-36732126 MS.gene87882:CDS 50.0%
! GGACGAGTTGAAGGCAGATT+TGG - chr2.4:36731598-36731617 None:intergenic 50.0%
! GGTTTTACCGCTTCCGCTTT+CGG - chr2.4:36731576-36731595 None:intergenic 50.0%
AGCGGGAGAGTTGTTTGAGG+CGG - chr2.4:36731703-36731722 None:intergenic 55.0%
AGGAGAAACCCTTCTACCCG+AGG - chr2.4:36732092-36732111 None:intergenic 55.0%
CCAGTCCGGGATTAGATGAG+AGG - chr2.4:36731730-36731749 None:intergenic 55.0%
CCTCCGCGGAATTTACTCTG+CGG + chr2.4:36731775-36731794 MS.gene87882:CDS 55.0%
CCTCTCATCTAATCCCGGAC+TGG + chr2.4:36731727-36731746 MS.gene87882:CDS 55.0%
CTGCCTTCAACTCGTCCTCA+TGG + chr2.4:36731601-36731620 MS.gene87882:CDS 55.0%
GCCCATGACAAACCCAAAGC+AGG - chr2.4:36732112-36732131 None:intergenic 55.0%
GCTTGAAAACGTTGGCGGAG+AGG + chr2.4:36731975-36731994 MS.gene87882:CDS 55.0%
TCGAGGGAGGAATTTGGGGA+GGG + chr2.4:36732160-36732179 MS.gene87882:CDS 55.0%
! AGTTGTTTGAGGCGGCGGAT+GGG - chr2.4:36731695-36731714 None:intergenic 55.0%
! GAGCCATGAGGACGAGTTGA+AGG - chr2.4:36731607-36731626 None:intergenic 55.0%
! TGATTTTGTGGGGATGCCGC+CGG - chr2.4:36731537-36731556 None:intergenic 55.0%
!! GCGGATGGGGAAAGGGTATT+CGG - chr2.4:36731681-36731700 None:intergenic 55.0%
!! GGAGAGGTTTGGGTTGGTTG+TGG + chr2.4:36731991-36732010 MS.gene87882:CDS 55.0%
ACCGAACTCGTCGCCGAAAG+CGG + chr2.4:36731560-36731579 MS.gene87882:CDS 60.0%
AGAGGGTCAGTTCCCAGTCC+GGG - chr2.4:36731743-36731762 None:intergenic 60.0%
AGGGTGGAAGCTGAGCCATG+AGG - chr2.4:36731619-36731638 None:intergenic 60.0%
CCGCAGAGTAAATTCCGCGG+AGG - chr2.4:36731778-36731797 None:intergenic 60.0%
GAGAGGGTCAGTTCCCAGTC+CGG - chr2.4:36731744-36731763 None:intergenic 60.0%
GCGAGGCAGCGATCAAGAAC+GGG - chr2.4:36731515-36731534 None:intergenic 60.0%
GGAGGAAAACGCGGTCGAGA+GGG - chr2.4:36731760-36731779 None:intergenic 60.0%
GGCGAGGCAGCGATCAAGAA+CGG - chr2.4:36731516-36731535 None:intergenic 60.0%
GTCGAGGGAGGAATTTGGGG+AGG + chr2.4:36732159-36732178 MS.gene87882:CDS 60.0%
GTTCTTGATCGCTGCCTCGC+CGG + chr2.4:36731515-36731534 MS.gene87882:CDS 60.0%
GTTGGCGGAGAGGTTTGGGT+TGG + chr2.4:36731985-36732004 MS.gene87882:CDS 60.0%
TCCGCTTTCGGCGACGAGTT+CGG - chr2.4:36731564-36731583 None:intergenic 60.0%
! GAGTTGTTTGAGGCGGCGGA+TGG - chr2.4:36731696-36731715 None:intergenic 60.0%
! GGGAGAGTTGTTTGAGGCGG+CGG - chr2.4:36731700-36731719 None:intergenic 60.0%
! GTTGTTTGAGGCGGCGGATG+GGG - chr2.4:36731694-36731713 None:intergenic 60.0%
CGGAGGAAAACGCGGTCGAG+AGG - chr2.4:36731761-36731780 None:intergenic 65.0%
CTCGTCGCCGAAAGCGGAAG+CGG + chr2.4:36731566-36731585 MS.gene87882:CDS 65.0%
GCTCAGCTTCCACCCTCCCA+CGG + chr2.4:36731623-36731642 MS.gene87882:CDS 65.0%
TGAGGCGGCGGATGGGGAAA+GGG - chr2.4:36731688-36731707 None:intergenic 65.0%
TTGAGGCGGCGGATGGGGAA+AGG - chr2.4:36731689-36731708 None:intergenic 65.0%
! CTCGACCGCGTTTTCCTCCG+CGG + chr2.4:36731761-36731780 MS.gene87882:CDS 65.0%
ATGAAGCGGAGAGGCCGCCG+TGG - chr2.4:36731643-36731662 None:intergenic 70.0%
CAGCTTCCACCCTCCCACGG+CGG + chr2.4:36731626-36731645 MS.gene87882:CDS 70.0%
CTTGATCGCTGCCTCGCCGG+CGG + chr2.4:36731518-36731537 MS.gene87882:CDS 70.0%
TGAAGCGGAGAGGCCGCCGT+GGG - chr2.4:36731642-36731661 None:intergenic 70.0%
TTGTGGGGATGCCGCCGGCG+AGG - chr2.4:36731532-36731551 None:intergenic 75.0%
! AGCGGAGAGGCCGCCGTGGG+AGG - chr2.4:36731639-36731658 None:intergenic 80.0%
! GAGAGGCCGCCGTGGGAGGG+TGG - chr2.4:36731635-36731654 None:intergenic 80.0%
! GCGGAGAGGCCGCCGTGGGA+GGG - chr2.4:36731638-36731657 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 36731443 36732306 36731443 ID=MS.gene87882
chr2.4 mRNA 36731443 36732306 36731443 ID=MS.gene87882.t1;Parent=MS.gene87882
chr2.4 exon 36731443 36732306 36731443 ID=MS.gene87882.t1.exon1;Parent=MS.gene87882.t1
chr2.4 CDS 36731443 36732306 36731443 ID=cds.MS.gene87882.t1;Parent=MS.gene87882.t1
Gene Sequence

>MS.gene87882

ATGAGCACAGCGGCGCAGAATCTAGTGCATGAGCTCCACCAAAAAACCGAGAAATGCAGCGTAGGTTGTCCCGTTCTTGATCGCTGCCTCGCCGGCGGCATCCCCACAAAATCAGTGACCGAACTCGTCGCCGAAAGCGGAAGCGGTAAAACCCAAATCTGCCTTCAACTCGTCCTCATGGCTCAGCTTCCACCCTCCCACGGCGGCCTCTCCGCTTCATCACTCTACATATTCACCGAATACCCTTTCCCCATCCGCCGCCTCAAACAACTCTCCCGCTCTTTCCTCTCATCTAATCCCGGACTGGGAACTGACCCTCTCGACCGCGTTTTCCTCCGCGGAATTTACTCTGCGGAGAAATTCGTTGAATTTTTACCTGACATTGAGATTTTACTCACTTACTGGAAATCGAGGTTGCGTCCTGTTAGAGTTATCGTAGTTGATTCTATTGCTGCTTTGTTTAGATCTGAATTTGAAAACTCTATGTTGGATCTTAAACGTAGATCGTCCTTGTTTTTCAAGATTTCTGGTGGCTTGAAAACGTTGGCGGAGAGGTTTGGGTTGGTTGTGGTTGTTACAAATCAGGTAGTTGATTTGATTGAGGAGAATGAAGGTCTGAGGATTGGGAATTTTAGTGACTTGTATTCCTCGGGTAGAAGGGTTTCTCCTGCTTTGGGTTTGTCATGGGCCAATTGTGTGAATTCTAGAATCTTCTTGTCGAGGGAGGAATTTGGGGAGGGTAGTAGGAAATTGAGAACATTTAGGGTTGTTTTTGCTCCTCATTTACCTCAATGTTGTTCTGAGTTTGTTATTACAGGTGAAGGTGTTTTTGGTGTAGAGATGGGTCAAAGGAATGGTGTATGA
Protein sequence

>MS.gene87882.t1

MSTAAQNLVHELHQKTEKCSVGCPVLDRCLAGGIPTKSVTELVAESGSGKTQICLQLVLMAQLPPSHGGLSASSLYIFTEYPFPIRRLKQLSRSFLSSNPGLGTDPLDRVFLRGIYSAEKFVEFLPDIEILLTYWKSRLRPVRVIVVDSIAALFRSEFENSMLDLKRRSSLFFKISGGLKTLAERFGLVVVVTNQVVDLIEENEGLRIGNFSDLYSSGRRVSPALGLSWANCVNSRIFLSREEFGEGSRKLRTFRVVFAPHLPQCCSEFVITGEGVFGVEMGQRNGV