AlfalfaGEDB | MS.gene87882

M. sativa cultivar XinJiangDaYe / MS.gene87882

KEGG: K10880
GO: GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005524 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033554 GO:0034641 GO:0035639 GO:0036094 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363
PFAM: PF08423.14

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87882.t1	KEH37691.1	97.6	287	7	0	1	287	1	287	1.80E-155	558.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87882.t1	Q9FKM5	51.6	285	115	5	18	280	20	303	9.4e-73	275.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87882.t1	A0A072V7S1	97.6	287	7	0	1	287	1	287	1.3e-155	558.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene009458	MS.gene87882	PPI
MS.gene51627	MS.gene87882	PPI
MS.gene87882	MS.gene63514	PPI
MS.gene87882	MS.gene56256	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87882.t1	MTR_2g445230	97.561	287	7	0	1	287	1	287	0.0	566
MS.gene87882.t1	MTR_4g124560	30.769	273	161	7	11	280	93	340	2.05e-26	106
MS.gene87882.t1	MTR_4g024850	28.148	270	156	7	20	276	90	334	1.55e-22	95.9
MS.gene87882.t1	MTR_2g093050	30.466	279	148	9	26	281	91	346	4.14e-22	95.5
MS.gene87882.t1	MTR_4g111780	28.148	270	156	8	20	276	90	334	9.25e-22	93.6
MS.gene87882.t1	MTR_1g102670	33.333	183	106	4	18	197	87	256	3.23e-17	80.5
MS.gene87882.t1	MTR_4g062540	28.631	241	134	9	8	242	78	286	3.91e-12	65.9
MS.gene87882.t1	MTR_4g062540	28.689	244	137	9	8	242	78	293	6.29e-12	65.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87882.t1	AT5G57450	51.220	287	117	5	16	280	18	303	2.61e-94	281
MS.gene87882.t1	AT5G57450	51.220	287	117	5	16	280	18	303	2.61e-94	281
MS.gene87882.t1	AT5G20850	32.000	275	159	8	3	276	90	337	1.61e-26	106
MS.gene87882.t1	AT5G20850	34.500	200	118	5	3	201	90	277	4.60e-22	94.4
MS.gene87882.t1	AT3G22880	30.534	262	150	7	18	276	107	339	2.27e-21	92.8
MS.gene87882.t1	AT2G45280	27.888	251	142	7	5	239	92	319	3.95e-21	92.0
MS.gene87882.t1	AT2G45280	27.888	251	142	7	5	239	116	343	4.84e-21	92.0
MS.gene87882.t1	AT3G22880	30.279	251	143	7	18	265	107	328	2.50e-19	86.7
MS.gene87882.t1	AT2G28560	29.545	264	155	8	26	276	59	304	7.27e-19	85.5
MS.gene87882.t1	AT2G28560	29.545	264	155	8	26	276	91	336	9.14e-19	85.5

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Find 92 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCGAGAAATGCAGCGT+AGG	0.635039	2.4:+36731485	MS.gene87882:CDS
AAAACGTTGGCGGAGAGGTT+TGG	0.344119	2.4:+36731980	MS.gene87882:CDS
AAACGTTGGCGGAGAGGTTT+GGG	0.342466	2.4:+36731981	MS.gene87882:CDS
AAATTCCGCGGAGGAAAACG+CGG	0.710936	2.4:-36731766	None:intergenic
AAGAGCGGGAGAGTTGTTTG+AGG	0.600193	2.4:-36731703	None:intergenic
ACAAACTCAGAACAACATTG+AGG	0.651504	2.4:-36732229	None:intergenic
ACAACCTACGCTGCATTTCT+CGG	0.395622	2.4:-36731489	None:intergenic
ACCGAACTCGTCGCCGAAAG+CGG	0.541419	2.4:+36731560	MS.gene87882:CDS
ACTTGTATTCCTCGGGTAGA+AGG	0.352847	2.4:+36732080	MS.gene87882:CDS
AGAAGGGTTTCTCCTGCTTT+GGG	0.302117	2.4:+36732097	MS.gene87882:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACCAGAAATCTTGAAAAACA+AGG	-	chr2.4:36731954-36731973	None:intergenic	30.0%
GTAGGAAATTGAGAACATTT+AGG	+	chr2.4:36732185-36732204	MS.gene87882:CDS	30.0%
ACAAACTCAGAACAACATTG+AGG	-	chr2.4:36732232-36732251	None:intergenic	35.0%
GAACAACATTGAGGTAAATG+AGG	-	chr2.4:36732223-36732242	None:intergenic	35.0%
GAATATGTAGAGTGATGAAG+CGG	-	chr2.4:36731657-36731676	None:intergenic	35.0%
GATTTGATTGAGGAGAATGA+AGG	+	chr2.4:36732034-36732053	MS.gene87882:CDS	35.0%
GTGAGTAAAATCTCAATGTC+AGG	-	chr2.4:36731821-36731840	None:intergenic	35.0%
TCAACTACGATAACTCTAAC+AGG	-	chr2.4:36731866-36731885	None:intergenic	35.0%
AGAATGAAGGTCTGAGGATT+GGG	+	chr2.4:36732047-36732066	MS.gene87882:CDS	40.0%
ATTAGATGAGAGGAAAGAGC+GGG	-	chr2.4:36731720-36731739	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	36731443	36732306	36731443	ID=MS.gene87882
chr2.4	mRNA	36731443	36732306	36731443	ID=MS.gene87882.t1;Parent=MS.gene87882
chr2.4	exon	36731443	36732306	36731443	ID=MS.gene87882.t1.exon1;Parent=MS.gene87882.t1
chr2.4	CDS	36731443	36732306	36731443	ID=cds.MS.gene87882.t1;Parent=MS.gene87882.t1

Gene Sequence

>MS.gene87882

ATGAGCACAGCGGCGCAGAATCTAGTGCATGAGCTCCACCAAAAAACCGAGAAATGCAGCGTAGGTTGTCCCGTTCTTGATCGCTGCCTCGCCGGCGGCATCCCCACAAAATCAGTGACCGAACTCGTCGCCGAAAGCGGAAGCGGTAAAACCCAAATCTGCCTTCAACTCGTCCTCATGGCTCAGCTTCCACCCTCCCACGGCGGCCTCTCCGCTTCATCACTCTACATATTCACCGAATACCCTTTCCCCATCCGCCGCCTCAAACAACTCTCCCGCTCTTTCCTCTCATCTAATCCCGGACTGGGAACTGACCCTCTCGACCGCGTTTTCCTCCGCGGAATTTACTCTGCGGAGAAATTCGTTGAATTTTTACCTGACATTGAGATTTTACTCACTTACTGGAAATCGAGGTTGCGTCCTGTTAGAGTTATCGTAGTTGATTCTATTGCTGCTTTGTTTAGATCTGAATTTGAAAACTCTATGTTGGATCTTAAACGTAGATCGTCCTTGTTTTTCAAGATTTCTGGTGGCTTGAAAACGTTGGCGGAGAGGTTTGGGTTGGTTGTGGTTGTTACAAATCAGGTAGTTGATTTGATTGAGGAGAATGAAGGTCTGAGGATTGGGAATTTTAGTGACTTGTATTCCTCGGGTAGAAGGGTTTCTCCTGCTTTGGGTTTGTCATGGGCCAATTGTGTGAATTCTAGAATCTTCTTGTCGAGGGAGGAATTTGGGGAGGGTAGTAGGAAATTGAGAACATTTAGGGTTGTTTTTGCTCCTCATTTACCTCAATGTTGTTCTGAGTTTGTTATTACAGGTGAAGGTGTTTTTGGTGTAGAGATGGGTCAAAGGAATGGTGTATGA

Protein sequence

>MS.gene87882.t1

MSTAAQNLVHELHQKTEKCSVGCPVLDRCLAGGIPTKSVTELVAESGSGKTQICLQLVLMAQLPPSHGGLSASSLYIFTEYPFPIRRLKQLSRSFLSSNPGLGTDPLDRVFLRGIYSAEKFVEFLPDIEILLTYWKSRLRPVRVIVVDSIAALFRSEFENSMLDLKRRSSLFFKISGGLKTLAERFGLVVVVTNQVVDLIEENEGLRIGNFSDLYSSGRRVSPALGLSWANCVNSRIFLSREEFGEGSRKLRTFRVVFAPHLPQCCSEFVITGEGVFGVEMGQRNGV