AlfalfaGEDB | MS.gene88253

M. sativa cultivar XinJiangDaYe / MS.gene88253

KEGG: K21752
GO: GO:0003674 GO:0005488 GO:0005515 GO:0046982 GO:0046983
PFAM: PF00808.26

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88253.t1	QDW65496.1	87	293	37	1	1	293	1	292	1.70E-119	439.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88253.t1	Q14919	56.8	88	38	0	2	89	5	92	1.2e-22	109.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88253.t1	A0A5B8GTQ9	87.0	293	37	1	1	293	1	292	1.2e-119	439.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene88253.t1	TF	NF-YC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene76728	MS.gene88253	PPI
MS.gene87064	MS.gene88253	PPI
MS.gene87743	MS.gene88253	PPI
MS.gene88253	MS.gene82237	PPI
MS.gene88253	MS.gene77045	PPI
MS.gene88253	MS.gene42075	PPI
MS.gene88253	MS.gene48819	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88253.t1	MTR_3g012030	98.188	276	5	0	1	276	1	276	0.0	521
MS.gene88253.t1	MTR_3g012030	98.069	259	5	0	18	276	1	259	6.17e-174	486
MS.gene88253.t1	MTR_3g012030	97.674	215	5	0	62	276	1	215	2.96e-139	397
MS.gene88253.t1	MTR_8g041420	69.204	289	72	6	1	273	1	288	2.80e-120	351
MS.gene88253.t1	MTR_5g088760	52.560	293	111	10	1	273	1	285	6.71e-64	207
MS.gene88253.t1	MTR_5g088760	51.064	282	110	10	12	273	3	276	1.02e-55	185
MS.gene88253.t1	MTR_5g047890	83.333	102	17	0	299	400	241	342	7.70e-55	184
MS.gene88253.t1	MTR_3g012020	85.437	103	14	1	299	400	291	393	2.87e-54	184
MS.gene88253.t1	MTR_5g088760	50.000	276	110	10	18	273	1	268	1.42e-51	174
MS.gene88253.t1	MTR_1g055415	77.451	102	23	0	299	400	242	343	9.25e-51	174

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88253.t1	AT3G12480	52.249	289	111	9	1	274	1	277	1.94e-75	236
MS.gene88253.t1	AT5G19490	63.504	137	42	4	1	136	1	130	1.28e-49	169
MS.gene88253.t1	AT2G34700	39.604	101	55	2	304	398	73	173	2.53e-14	71.2
MS.gene88253.t1	AT1G54830	41.026	78	46	0	9	86	71	148	4.00e-12	65.9
MS.gene88253.t1	AT1G54830	41.026	78	46	0	9	86	71	148	4.00e-12	65.9
MS.gene88253.t1	AT1G54830	41.026	78	46	0	9	86	71	148	4.00e-12	65.9
MS.gene88253.t1	AT1G08970	41.026	78	46	0	9	86	81	158	7.96e-12	65.1
MS.gene88253.t1	AT1G08970	41.026	78	46	0	9	86	81	158	7.96e-12	65.1
MS.gene88253.t1	AT1G08970	41.026	78	46	0	9	86	81	158	7.96e-12	65.1
MS.gene88253.t1	AT1G08970	41.026	78	46	0	9	86	81	158	7.96e-12	65.1

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Find 110 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTACAGCAGGGAAAC+GGG	0.451379	3.3:+7838979	None:intergenic
AAACCCTCAAATCTTCATGG+TGG	0.711349	3.3:-7831548	MS.gene88253:CDS
AAAGCCAAGACTGATAAGAA+TGG	0.565446	3.3:-7831659	MS.gene88253:CDS
AACATGAAGAAATTCCAGGT+TGG	0.648140	3.3:-7834912	MS.gene88253:CDS
AAGAATGGTTACTTCTATAT+TGG	0.286061	3.3:-7831644	MS.gene88253:CDS
AAGACCACCATGAAGATTTG+AGG	0.505523	3.3:+7831544	None:intergenic
AAGAGAAACCTTACATCAGC+AGG	0.497349	3.3:-7835187	MS.gene88253:CDS
AAGCACGGATATACCTACTC+AGG	0.637338	3.3:-7834971	MS.gene88253:CDS
AATCTTCATGGTGGTCTTAC+TGG	0.189591	3.3:-7831539	MS.gene88253:CDS
AATGGTTACTTCTATATTGG+AGG	0.479179	3.3:-7831641	MS.gene88253:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	7831439	7839020	7831439	ID=MS.gene88253
chr3.3	mRNA	7831439	7839020	7831439	ID=MS.gene88253.t1;Parent=MS.gene88253
chr3.3	exon	7838988	7839020	7838988	ID=MS.gene88253.t1.exon1;Parent=MS.gene88253.t1
chr3.3	CDS	7838988	7839020	7838988	ID=cds.MS.gene88253.t1;Parent=MS.gene88253.t1
chr3.3	exon	7836460	7836532	7836460	ID=MS.gene88253.t1.exon2;Parent=MS.gene88253.t1
chr3.3	CDS	7836460	7836532	7836460	ID=cds.MS.gene88253.t1;Parent=MS.gene88253.t1
chr3.3	exon	7836273	7836366	7836273	ID=MS.gene88253.t1.exon3;Parent=MS.gene88253.t1
chr3.3	CDS	7836273	7836366	7836273	ID=cds.MS.gene88253.t1;Parent=MS.gene88253.t1
chr3.3	exon	7835642	7835770	7835642	ID=MS.gene88253.t1.exon4;Parent=MS.gene88253.t1
chr3.3	CDS	7835642	7835770	7835642	ID=cds.MS.gene88253.t1;Parent=MS.gene88253.t1
chr3.3	exon	7835493	7835550	7835493	ID=MS.gene88253.t1.exon5;Parent=MS.gene88253.t1
chr3.3	CDS	7835493	7835550	7835493	ID=cds.MS.gene88253.t1;Parent=MS.gene88253.t1
chr3.3	exon	7834854	7835295	7834854	ID=MS.gene88253.t1.exon6;Parent=MS.gene88253.t1
chr3.3	CDS	7834854	7835295	7834854	ID=cds.MS.gene88253.t1;Parent=MS.gene88253.t1
chr3.3	exon	7832934	7833014	7832934	ID=MS.gene88253.t1.exon7;Parent=MS.gene88253.t1
chr3.3	CDS	7832934	7833014	7832934	ID=cds.MS.gene88253.t1;Parent=MS.gene88253.t1
chr3.3	exon	7831439	7831731	7831439	ID=MS.gene88253.t1.exon8;Parent=MS.gene88253.t1
chr3.3	CDS	7831439	7831731	7831439	ID=cds.MS.gene88253.t1;Parent=MS.gene88253.t1

Gene Sequence

>MS.gene88253

ATGAAGAAGAAGCTTGATACCCGTTTCCCTGCTGTAAGTTTTTTCTGCTTTTTAGCTTTAAAGTTTGTATTTTTTCATAGTGCCGTTGTGTTTTTGCATCTGGGTATTTTTTTTTTGTTTTTATTGATTTTTATATAATTGAGCTTTTTTTAATTTTGGTTTGATGATAAATTGATAATTTAGGGTTTCTGGGTTGCGGGGGTGTGAATTGGGTGGAATGGTATGATGGGTGTGACTGGAATTTTAGTATGATTCATAAGATTTATTTGTATGCTAATAGCTCACGTAGACACCGACTCCGGTCACGACAGTGACACATCGACACCGATAATAATTTGCGTAGATACATAATTAAATGCAATTACATGTGTCAGTGTCGTGTTGGATATTGGCATGTGTCAATTGAACTTTGTTTATTTATTTGGGTTTGATGATAATAGGGTTTCTAGGTTGTGGGGGTGTGAATTGGGTAGAGTGGCATGATGGGCATGACTGGAATTTTTGTATGATTCATAGGATTTTGATGTCTGCTAATAGCTCACATAGACACCGACACCGGTCACGACACTAATACATCGACACTCATGATAATTTGAGAAAATATAATGACATGTGTCAATGTGGTGTTGGTGTGGAAAACTGACATGTGCCAATTGAGCTTTGGTTACTTAGGTTTGATGATAATTGAGGGTTACTAGTTGTGGGGTGGTGTGATTGGAATTTAGTATGATTCATAGGACTTATTTGCCTGCTAAAAACTCAGAGACCAATACCGGTCACAACTGTCACATTGACACCGATAATAATTTGAGAAGATACATAATTGAATGTAATTGCATGTGTCAATGTCGTGTCGGATACCCGCACATGTCAATTGAGCTTTGCTTATTTGGGTTTGATGATAATTGAGGGTTTCTGGGTTATCGGGGTGTGAATTGGGTAGAGTGGTATGTTGGGTTTGACTGGAATTTAGTAAAGTTCATAGGATTTATATGCTCGTGTTTGATTATAATTTGAAATATATAGGTTAATAGTTATGTCTCATGCGAGTTTTAGCCAGTGCTATCAATAACCCATTATTTCGCTACATCTGCTAGCAAAACTGGAATAGAGGCAGCTATTGTCCTATTAGAAAAATTAGGACAGAGTCACGGTAGCGTTATAGTGCCTCTATCGCCGCTATTTGACAATACTTGTTTAAGCCTTCTTGGTGCTTGGTTGGTTTGGGTGGGGTCTATAATTGCTGTTAGTATCAAAATAAGTGAGGAATGTATTCATTGGGGCTGTTGTTGAGCTTTACGATGGGTATGTTTTATTGGGTTAACATACCTCTTTGGCCTTCCATTTGAATTATCCTAATGCTCTGGAAATTTGAAGTGCACAAATTTTCCGTTTGTGAATTCGATGATCCTTTTGTGATGGTTACGGTTAGAGATATAGGCTTATGTTTGCATTACCCCTTTAGTTTTGTGAAATCTAAATGCAAAAGATAAAATTTGTCTTTTGTGTTTTTTGCCTCAAATTCTGATGCAAACTGCAGTGCAAAAATGCAGATAATTGTTCATTTGTCGCTTTTGCTGCAAAGAAGATGCTTAATCATACAAAGTATGCTTGTACAGATGTGCCAGAACATTATTTTTTATCACAAGGTTATAGGTAATAAATGATAGTCCTTGCCCGTTTTCCATATTATCCCAATTACTTGAAGTGAAGCTTGCAACACATATGCACATTGTGCAAACTGTGATGTTAAATAATGTAATCAGAGAGATGGATTGGTTAAACCGAATGAAGATGGTTATAGAAGAATGTCATTGTCAAGACTGAAGTCTTTTATAAGTGTAGGTTATGTCAACTTTTTTCCAGCTGCTGCTGTCATATATATAGATAAATTGCTCATTCTCTAGCATCGTATGTGTAACTTATACAATTGTATAGATCTCCTCCTACAGTTATCCATATATGAAAAGATTGCATTGACCAAACCTATTGGATACATTTATGATTACACCTGGAGTTCGGGTTTTGGTTAACACTGCAACTGATTGTGTCCTTCATTCTTTCCTCTTTGTTAAAGTGTTCTATGCTTAGATTTAATTCTGTAGCAAAATGGCTGACCATGTTTTGTGGAATAGTTTTTGTATCTTGCTCCTTTTGATATATTGAGTAGCTTAACCTTGTTGAATCACACTGTTCTGCTTAGCCAATAGGAGTGGAAGTGTTGTCAAACAGTGGCTATAACAGCTCTATAGCACTATAGTGTAGCGGAATTGGAACAAATCACAATCGTTCCGATCTAGTACAAAGTATTGTCAAACAGCAGCTTTAGCATAACAGAATTTAAACATTCCGTTATTTCCTACAATCCGCGATTGACAACACTCAGTGGGGAATTTGAGAATATAATTTAGAACCTTTACAAATAATCTATTTAAGCAAAGCAATCTATTAAGAGAATGCTTTATCTCATGAAAACATTAATTTGCAGGCTCGGATAAAGAAGATAATGCAAGCAGATGAGGATGTTGGAAAGATAGCACTGGCAGTTCCTGTTTTAGTTTGTGAGTTGCTTTTAGTTATTTCTTAGTTAAATTTTGGGCATTTGATGCGTCTTTTCTCTCATGTTGTTGACCTCGGTCTTGATTTTCTTACAGCAAAAGCTCTGGAATTATTTTTGCAAGATCTTTGTGACCGAACTTATGAAATAACTCTACAGAGAGGAGCAAAGACCATGAATGCATTGCATTTGTAAGTTGTGGAACACTTTATTTTCTATATTTTTCTTGAGGAAACCTTCAGCTGTGAATTGTTTCTGTCCATGCATAGACCGATTTTACTTGTGCTGGTGTTTGATTTAATGATTAAGAATTGAGGTTACTAAAATTTCCGATTCTCATCTCTCGGTCAAAGACGGTCAGATCCATGCTAAGTATGAACTGATCACCCTAAATGTAAAGCATTTGGGTTTTAGTTTTATATCTCCGAATAGAGTTTTCGGAAAATTTACTGTCGGGCCTGTTTGTTACGAATTATAAAATAAGTGATTTTGGCATTCAATGATTTAGAGAAGCTATTTTGTGTTTGTTTATGTAATAAGAATCACTTTTAAAAAAAAAAATCATCGATACAAAATAATGTTTATGAGAAGCTGCTCAAAACAGCTCTCCATTCGAAGCAGATTTTAGATATATATCTTTAATGTATTATGTATTGTGAGCCTAGTCTAACCAGTGGTGAACACAAATTTCAGGAAACATTGTGTACAAAGCTACAACGTCTTTGACTTTTTGAGAGACATTGTCAGCAGGGTTCCTGACTATAGCCATGGACATGGCCATTCTGAGGCTGGGGCTGATGATCGCGCCGTTCCAAAGAGAAGGTTCGAAGTCCAGTAGCTTTTATCTTTTTATTTATCTTGTCTAATTTATCGATGCATATAAGCAATTAAAACCGTTAAGAATGTTTACCAGGAAAGCTGCTGGTGATGATTGTAATGACAGCGATGAAGAGGCTAAGCGGAGTAAAATGGTAATTTCCCTTTTAATGATAAGTTCAAATAAGTCACTTCATAGAGCCTCTTTATTCATAAGCATCTATAACCTTATAATTGGGAATCAAATGTTTATCTCAGTTAAAAAGTTCTAAGAAAGTAGAAGGTAATCTAAACTGAGACCTGCTGCAGTTTTTAGTCATGATCGATGCTGGTTAATTTTGTTTGATTACAGCTTGAGTTGGGCCACACTGGCGGTACTGGTAGGGGAAGAGGAAGGGGTAGAGGAAGAGGCCGCGGTCGAGGGGCTCGAACTGCAGAAAGAGAAACCTTACATCAGCAGGTTGAATCTGAACCTTGCACTTCTATTCAGCAAACTAGCAAAGACGTCCCCAATCCAAGTATGGCAATAGATAATGGTTCAGAACCAAGGGAGTTATCAAAGGAAAATATTGCAGCTCACGAAGGAAGTACTCAATCTCTCCGAAACATTGACCTGAATGCCAACTTACATGAAAACGAGAACAAAAACAATACAAGCACGGATATACCTACTCAGGCCCCATTGCCTGAACCTGCTGCAACAACAGATATGCAACATGAAGAAATTCCAGGTTGGTCCCTTTCTGATGTCGACAAGATGGCGATTGACACGCTGCAGCTTGCAGCAAACCTTGGTAATAGGCTAGATGAGGATGAGGAAGATTATGATGAGGAGGAAGAGTAGCTAACACCTTAAGGTGGAAATCATGACTCTGATGCTAAATGAATGATCCCTTTTTTTCTTTGCCTGGTATACCAATGACCTTGTGTAGATACTAGCAAATGTAGTTTCTTCTTATTTAGTTTCACCACTTTTTAGGGTTTAAATGGATATTGTTGTTGTAGGTTACATCAACTTTGCTAGTACATGATTTACTTCTTGGTAAAGTTGGGTTACCAGTTGGTTTCATTGTTGTTTTATTTAAGATACTGTCTGTCAATGGTTTTCTACTTCTGAGTTGTACCTCAATCAGAAAGCATAAGTATCCTTCTTAACAATAAATAAGGTAAAAGAAAAAAAAAAGAAAAATAATATCTAGGTGATGGAAGAAGTAAGATTAAATTGAAATAGATTATAAACATATTGTTTTATTAATTAACATTTTTTAATTCTTTTAAAATGTTTATATTTTTAAATAAATATTTACAAACACCACCAGGTTCGTTTCATGTATTTTATGAAATATAATATTTTACTTTTTCAAATAATAAGCAAAGAAATTGCATCTATTGAAAAAGTCTTGATTACAAGGATGTTATTGTAGAAAAGCACAACAACCAATAGTAAACAACACCACAAATGTCAGATAAAAAATAATAATTTAAAGACAACAGTTAGTTGATAGAGTACACATTTATTTCCCCTGTGGAAGAGTACATTGGTCATTATGCTAGGATACTTGATGTTGATTTCTCTGAAAAAATTTACAAGGATATTCTGGTAGAACGTGATGGTTATCTTTGTAAATTGGACACACAATAATGGTAAGTAAATTGGACACACAATTCATCTTTGTAAGAAGATGCGAAAGCATGATAGATCAAAAAGAAAGATGCAAGCACTTTCAATCCACCAATGCTGATAAGGTTATGCCTGTTTTTGGCAATCAAGTGGGTAAAAAAGGTTAGCGTATGAGACTTAGCAGGAAATGGGCAACAAGAGTATAATCATGGTCATGCTAAGAATTCTATGACTGCTAAGAGAATTAGCATACCAGTTCCTGTAGCAGTGAATCAGGTTATTTATATTTCTGTGAATCAGGAACTGATTATCAGAATCAGAAACTGATTAGCAGTGAATCAGCCCTGTTGTCTTTGAAGACAGTGCTGTCATGTTGGAGAAAAGTAATGGACCTGCAGTTGAAAAATGTCATCCTAAGGATATAGATCAAGCAAAAAATAATGAAAAATCTCCCTGGAGATAACATCGTTTATTACGGCAGGGACTGAACCGGTGCATTATTTAGCAGGAAAGTCAGCTGATGAAGTGGCTAAGGTTGTTTCAAGTGATATTAATACCAACCATTTTGCAGCTTCTCTAGCTTTTGATGACAGAATCATAACCTATGAAGTACAGACACGGACACTGGACACAACACTGACGCGTCCACAGTGATAAAATTTTGTGAAAATGACATAGGTTATGATCCTGAGACTCGCCTTCGATCACAAGTATCGGTGCAACATAGATCATAACAAATTATGCTCACAATTAGAGTTAAACATACCTCTGAGGAGACCTATCCTCTGAGGAGCAAGATATGGCAGATGAATGAAATAACTATCAAGTGAGTGATAGAGAAGCTGATAGGGATTTCACCTTTTATGTCTCCAATAGGCAAAAAAAGGTGAAATTGAATCACAAGCATAATAGATTGCAGTAATCCAGTGGACATATAGTGATTATATACAAACTCATTCCAAAAAGGGTGTTAATAAAGAGAATGCCATATGAGTTTTGTTCCTGTTCTCAGTTTTAGCCAGATTGGACAGGAAATGGCATCAATTTCTTAGTATGGAGGAGATTCTTGGGCAGTTGGCTGTCTTGTGCATTGGTTTGTGATTTCATTGGTTGCTTTCTTTAGCTTAGTGTTCCTTGAAGGCTTGCTGGTAGCTTTGGTTTCCATAACTAGTTTAGGTTGTAACTTAGTGTTGATCCTTGAAACTTTTATGGTTGTTTGTTTGTTTCATTGGGTTTTAGCTTAGTCCCCCAATTTCTTCCTTTTTTTTTTTTTTTTTACTTTGGCTTAAATGCCTTTTTGGTAAACATTTTTTCATTTTTCTAAAGTTTTAGTACCTCTATTTTAAAATTCAGCTTTTGCTCCTCCTATTTCAAATTTTTATAACTTTTGATCCCCATAATATTTTAAGGTCAACGTTGATGATGTGTACAAGTCATTAATGACATGACAAAACACATATGAAGAAGTCACTAAATTTGATATGTCCACACGTGCCTTGTCATGTCATAAGTGACTTAGACTCATCGTCAAAGTTGATCTTAAAATGGGATGAGAGATCAAAAGTTAGAAAAAATTGAGATAAAAGGACCAAAAAGCTGAATTCTAAAATAGGAGTACCAAATCTTTAGAAAAGTGAATGGTTAAATAAGTTTTTGGTCTCTATAAATATATTCAATTTCGTTTTTAGTCCTCATAAAAAAAGTGACATGTTTTAATCCCTATAAAAATTTTCACCAAGTAGTTTTGAATTTTTTTAACATACTTGTTTAAAACACTCCGGTTCATACTCCTTTATTTTATTTGTCTTTTTAATTTACAAAGTATTTTTTTTATTTTTTTTCCTACTATCTTTTGTCACACCAAGCATTGCCTACAATCTTGCATGAAGAATCAAAATATATTATGTCAAATTGAGTGTATTTTTTTCACACCTTTTAGCCTAATATTTTATCTACAATGTTAATAGATCTAAAAATATTATTACAACCAATGATCTGTGTCCGTATATACATTCTTGTATTTTTTTTTCATTGACATGACAAGTTTGTAGAAGAACTTCTATAGTCACAGAAACATAATAACACGTTATTAATTTTGCCACCAAAATAGCACATTATTTAATTATTTCAAAAACACATTTTATTTAATAATCTTATTTTCTACCTTTTTTATTTGTGTATGTCAATATTATTATGTATTATTTCATAAGAGTTTCGACCAAAACCTTCTCCAATGTTATGTGTTATTTGCTGCTAAAAGACAATGACATTGTTATGTTGTTTTGAAAATTGAAGGTGCCGTTGTGAAGCTCCAATGTGACAACGCCAAACACAAATTGGTCCTTAAAGCCAAGACTGATAAGAATGGTTACTTCTATATTGGAGGCTCAAAGAACATTGTAGGTTATTCAACTCCTCGTTGCAGCGTTGTTTTAGATAGTGCACCAAAAGTACTAAAACCCTCAAATCTTCATGGTGGTCTTACTGGGGCTCTTCTTAAGCAAGTGAAACGATCGGTGTCTAAGGGGGTTTCTTTAAAACTCTACACTGTTGGACCGTTTGCATTTGAACCCAAATGTCATCATTAA

Protein sequence

>MS.gene88253.t1

MKKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNALHLKHCVQSYNVFDFLRDIVSRVPDYSHGHGHSEAGADDRAVPKRRKAAGDDCNDSDEEAKRSKMLELGHTGGTGRGRGRGRGRGRGRGARTAERETLHQQVESEPCTSIQQTSKDVPNPSMAIDNGSEPRELSKENIAAHEGSTQSLRNIDLNANLHENENKNNTSTDIPTQAPLPEPAATTDMQHEEIPGWSLSDVDKMAIDTLQLAANLVLARLDRKWHQFLSMEEILGQLAVLCIGAVVKLQCDNAKHKLVLKAKTDKNGYFYIGGSKNIVGYSTPRCSVVLDSAPKVLKPSNLHGGLTGALLKQVKRSVSKGVSLKLYTVGPFAFEPKCHH