AlfalfaGEDB | MS.gene88394

M. sativa cultivar XinJiangDaYe / MS.gene88394

KEGG: K21752
GO: GO:0003674 GO:0005488 GO:0005515 GO:0046982 GO:0046983
PFAM: PF00808.26

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88394.t1	XP_003628014.1	96.7	305	10	0	1	305	1	305	4.50E-125	457.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88394.t1	Q14919	58.0	88	37	0	2	89	5	92	4.3e-23	110.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88394.t1	G7LID3	96.7	305	10	0	1	305	1	305	3.3e-125	457.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene88394.t1	TF	NF-YC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene76728	MS.gene88394	PPI
MS.gene87064	MS.gene88394	PPI
MS.gene87743	MS.gene88394	PPI
MS.gene88394	MS.gene42075	PPI
MS.gene88394	MS.gene82237	PPI
MS.gene88394	MS.gene77045	PPI
MS.gene88394	MS.gene48819	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88394.t1	MTR_8g041420	97.377	305	8	0	1	305	1	305	0.0	613
MS.gene88394.t1	MTR_3g012030	69.831	295	73	6	1	294	1	280	8.09e-128	366
MS.gene88394.t1	MTR_3g012030	67.986	278	73	6	18	294	1	263	3.02e-114	331
MS.gene88394.t1	MTR_3g012030	61.966	234	73	6	62	294	1	219	2.78e-79	241
MS.gene88394.t1	MTR_5g088760	46.557	305	136	9	1	293	1	290	1.28e-63	203
MS.gene88394.t1	MTR_5g088760	44.898	294	135	9	12	293	3	281	3.22e-55	181
MS.gene88394.t1	MTR_5g088760	43.750	288	135	9	18	293	1	273	7.30e-51	169
MS.gene88394.t1	MTR_2g023340	38.202	89	52	1	1	86	75	163	8.84e-12	64.3
MS.gene88394.t1	MTR_3g099180	37.975	79	49	0	8	86	55	133	1.35e-11	63.5
MS.gene88394.t1	MTR_3g099180	37.975	79	49	0	8	86	55	133	1.38e-11	63.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88394.t1	AT3G12480	47.588	311	117	9	1	294	1	282	2.03e-69	218
MS.gene88394.t1	AT5G19490	62.857	140	39	4	1	137	1	130	8.85e-51	169
MS.gene88394.t1	AT1G54830	38.462	78	48	0	9	86	71	148	6.05e-12	64.3
MS.gene88394.t1	AT1G54830	38.462	78	48	0	9	86	71	148	6.05e-12	64.3
MS.gene88394.t1	AT1G54830	38.462	78	48	0	9	86	71	148	6.05e-12	64.3
MS.gene88394.t1	AT5G63470	37.975	79	49	0	8	86	78	156	1.33e-11	63.9
MS.gene88394.t1	AT5G63470	37.975	79	49	0	8	86	78	156	1.33e-11	63.9
MS.gene88394.t1	AT1G08970	38.462	78	48	0	9	86	81	158	1.45e-11	63.5
MS.gene88394.t1	AT1G08970	38.462	78	48	0	9	86	81	158	1.45e-11	63.5
MS.gene88394.t1	AT1G08970	38.462	78	48	0	9	86	81	158	1.45e-11	63.5

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Find 85 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATACTACAGATACAAATG+TGG	0.667589	8.3:+56796485	MS.gene88394:CDS
AAATACTCACAGCAGGGAAA+CGG	0.474814	8.3:-56793682	None:intergenic
AAGGTTCCTGACTACAGCCA+TGG	0.627628	8.3:+56795651	MS.gene88394:CDS
AATACTCACAGCAGGGAAAC+GGG	0.451379	8.3:-56793681	None:intergenic
ACAAATGTGGCTATACTTGA+TGG	0.465433	8.3:+56796498	MS.gene88394:CDS
ACAGTGATGAAGAAGCTAAG+AGG	0.558884	8.3:+56795840	MS.gene88394:CDS
ACCTCAGAAAGGGACCAGCC+CGG	0.596293	8.3:-56796750	None:intergenic
ACTGGTAGGGGAAGAGGCCG+AGG	0.543075	8.3:+56796357	MS.gene88394:CDS
ACTTGCTGAACAGAAGGACA+AGG	0.703007	8.3:-56796456	None:intergenic
AGAACAGCAACATTATTCTT+TGG	0.296672	8.3:-56796540	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATAATAGACTACTTGGAC+AGG	-	chr8.3:56795491-56795510	None:intergenic	30.0%
AAGCCAAACAACTACAAAAA+AGG	-	chr8.3:56794362-56794381	None:intergenic	30.0%
ACATGAAATTTCGACAAATG+AGG	-	chr8.3:56796076-56796095	None:intergenic	30.0%
AGAAACACTATTTGATGTGT+TGG	+	chr8.3:56794574-56794593	MS.gene88394:intron	30.0%
AGAACAGCAACATTATTCTT+TGG	-	chr8.3:56796543-56796562	None:intergenic	30.0%
AGCTTGATTAATGAAGTTGA+TGG	+	chr8.3:56793908-56793927	MS.gene88394:intron	30.0%
ATAAAATGAGTTTGGAAGGA+AGG	-	chr8.3:56795525-56795544	None:intergenic	30.0%
ATGCTTGATCAAATAATGCA+CGG	+	chr8.3:56795421-56795440	MS.gene88394:intron	30.0%
ATTCATTACAGCTAAAGCTT+TGG	+	chr8.3:56794764-56794783	MS.gene88394:intron	30.0%
ATTCATTCCTACAAGATTTC+AGG	-	chr8.3:56796207-56796226	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	56793662	56796860	56793662	ID=MS.gene88394
chr8.3	mRNA	56793662	56796860	56793662	ID=MS.gene88394.t1;Parent=MS.gene88394
chr8.3	exon	56793662	56793694	56793662	ID=MS.gene88394.t1.exon1;Parent=MS.gene88394.t1
chr8.3	CDS	56793662	56793694	56793662	ID=cds.MS.gene88394.t1;Parent=MS.gene88394.t1
chr8.3	exon	56794613	56794685	56794613	ID=MS.gene88394.t1.exon2;Parent=MS.gene88394.t1
chr8.3	CDS	56794613	56794685	56794613	ID=cds.MS.gene88394.t1;Parent=MS.gene88394.t1
chr8.3	exon	56794775	56794868	56794775	ID=MS.gene88394.t1.exon3;Parent=MS.gene88394.t1
chr8.3	CDS	56794775	56794868	56794775	ID=cds.MS.gene88394.t1;Parent=MS.gene88394.t1
chr8.3	exon	56795596	56795727	56795596	ID=MS.gene88394.t1.exon4;Parent=MS.gene88394.t1
chr8.3	CDS	56795596	56795727	56795596	ID=cds.MS.gene88394.t1;Parent=MS.gene88394.t1
chr8.3	exon	56795814	56795871	56795814	ID=MS.gene88394.t1.exon5;Parent=MS.gene88394.t1
chr8.3	CDS	56795814	56795871	56795814	ID=cds.MS.gene88394.t1;Parent=MS.gene88394.t1
chr8.3	exon	56796333	56796860	56796333	ID=MS.gene88394.t1.exon6;Parent=MS.gene88394.t1
chr8.3	CDS	56796333	56796860	56796333	ID=cds.MS.gene88394.t1;Parent=MS.gene88394.t1

Gene Sequence

>MS.gene88394

ATGAAGAAGAAGCTCGATACCCGTTTCCCTGCTGTGAGTATTTTCTGTTTTTTATTTCCAAAGTTTTGATCTTTTTTGTTATTTTATACTGTTTTGGAATTCAATTGAGTATATTTTTATTATGTGGGTTTTCTTAAATTGTGTTTTATGTGCTTAATTGTATTTGGTTATTTAGCTTAATTAAGATAACATTTTTTGGTTTGCATAATTTAATTTTGACCTAATTTTTGGGTTTTATGATGCTTGAGCTTGATTAATGAAGTTGATGGGTTTTGAGTGATGTGGTATTATGGAGTTGTGTGATTTTAATTTTTTTAGCTGCTTAGCTTAATTATGGAAAATATACTTTTACTTCATTTTATTTGGTAGTTTTTGGCTTACATAATTTAATTTTAACCTAATTTTTGGATATTGTACTTTTTTGTTTTGTTTTCTTTTGTTTTATGATGCTTGATTATTGATTTGATGGTTTATGAGTGATGTTATCATTTTTTAGCTGGTTAGCTTGGTTTGGGTTCTATAAATCTGTGATGCACTTACACAAATACAACATTGAGACACCACATTGAGCATAACAACATGTGTCAGTGTCGTGTCTAGTGTCCGTGTCAGGTGTCCTACATCGACACATGTTGGATGCCTCAGTGCCACATAGTCTATGAACCTAAAAATTTCATATTGGAGTTGTGTGATGTTACCTTTTTTGTAGTTGTTTGGCTTAATTTAGGTAATATGATCTGTGAAGCACACACACTATACCGGACACAAAAGTCAACATAACTGCATGTGTCAGTATCGTGTTTGGTGTCTAGGTGTCCAACACTGACACATGTTGGATTCTTTGGTGCTACATAGTCTATGATTCCCACCGTTAATACCAATTTTGGATTTCTTTGAATTTCTGCAATTTAAAGAAACACTATTTGATGTGTTGGAAACATAACTTTGCAGGCTCGGATAAAGAAAATAATGCAAGCTGATGAAGATGTTGGAAAGATAGCATTGGCTGTGCCTGTTTTAGTTTGTGAGTTGCTTTAAATTCGATTAACTATGTTGTTAACTTTAAGCTGCTGTTTGCTGGTTTTGTTTACATTACTGTTGAATTCATTACAGCTAAAGCTTTGGAGCTATTTCTGCAAGACCTTTGTGACCGTACTTATGAAATAACTCTTCAAAGAGGGGCAAAAACCATGAATTCATTGCATTTGTGAGTATATCATGCTTTGTAATACTTTTCTCTGATTTCCCATTTTAGTGGTCAAACTAACTCAAGAAATCAGAGCGGTGTGTCTCTATAATGGACTTATTTAGTTATTTTAATGTTTATAACTTCGATTTAAAACTCGCTTTTTTGTAAGTGTGAATATGTAATTTCATTGAAAGTAAACAAGAGTAATTAATGAACTCAATTTATCGTCAGTGGTCATTGTTGGAATGTTTAGAAAAACTAACATTCAGTGTGATTATTTTGCAAGATTATCATCTACAACAATGGAAGATAATAACTTATTCTGTCTTTCCTTCTAGATGTTTTCCTTTTTAGATAATTTGATTTGATTTCTTTTATTGAACATGTGAAAATGGAATACAATCAATATCTGCAGCCAATGAGCGGTCTCATGTGACACTTTTATCATGCAATCATGATTCACTTAAAACCAACCAAATGCTTATGAATTTTTTGAACTTTGAACTGTGATTCTAATATCTGTTCTTGTATGGCTTAAGGCATGATTAGTTTTACTCAATATATCCTGCAATGCTTGATCAAATAATGCACGGCTTGGGATCTTCCTGAACTGATTAATTTTAACTAGTATTCAGATCCTGTCCAAGTAGTCTATTATTTTTTTTCTTGTGCCTTCCTTCCAAACTCATTTTATCTTCAACAAACTCTAAAATCAAGCCTAACGAGTGTCAAATGTAAACTGCAGAAAACATTGTGTACAAAGCTATAATGTATTTGACTTTCTGAAGGATGTAGTCAGCAAGGTTCCTGACTACAGCCATGGTCATGGCCATACTGATGCTGGTGGTGCTGATGATCAGACCATTCCAAAAAGAAGGTTTGAAGTCTTATATCTGCTAATTCATGTGTTTTTACCTTTCTGATATACATGTAGTTATTAATGCACCTAAACCATGTTTGCAGGAAAGCTGCAGGTGATGATGGTAATGACAGTGATGAAGAAGCTAAGAGGGGCAAGATGGTAATTGTACTTTTCCTTATATTAGTGTGAAAGCCCCGTGTTTTAATTTCTTAAACACTTCTCAGCACCATTTCGTCAGTATCAATCACACAATCACATGTCTTAGACTAAGTCCTTTTTTCTCCATAAAAAACAAGGTTGTATATTATTTTCTCATGTTTTCACCCAAATTACAACAATACTTTCACGTGCACATGTTTACCTCATTTGTCGAAATTTCATGTTTGGAATACTTGGAATTTAAAAATAATGATGATTTATAATTTTGTACTCTTTTCACTATCTCTAGTATTTATCATCATTGTTTTCCATTTGTGCAAGCAAAAGACAATCCTGAAATCTTGTAGGAATGAATAATATGTTCAGTGTGAAGAATATCTGCATTTCAAGCCATTCCTTATTCTAGGAAAAAGCAATTCTATATCTTGTTTGATTAATGTTTTTTTTTCCTTCTATTCCAGCTTGAGTTGGGCCACACTAGCCCTACTGGTAGGGGAAGAGGCCGAGGTAGAGGAAGAGGAAGAGGACGAGGTCGAGGACGAGCTATTCAAAGAGAGGGACATCATCAGGAGACCGAGTCTGAGCCTTGTCCTTCTGTTCAGCAAGTTAGCCAAAATACTACAGATACAAATGTGGCTATACTTGATGGCACAGAGTCAAACGAGTTACCAAAGAATAATGTTGCTGTTCTTCCTGTTGATAACTCTGACTCACTCCTTAATATTGATCTGAATGCCAATATGAACGAAAATGATGACAAAAAGGCTAGCACAGTTTCTAATCTCACAGACACTAATCCCAAAGCCGCTAATCCTGAAGCCGCTAATCCCCCTGTCTCTGAACCTCCTCCAACAGACAGCAGTCATCATGAAGAAATTCCGGGCTGGTCCCTTTCTGAGGTGGACAAGATGGCCATTGATTCGATGCAGCTTGCCCAGCTTGGTACGCGAATGGATGAAGATGATGAAGATTATGACGAGGAAGGGTAA

Protein sequence

>MS.gene88394.t1

MKKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLKDVVSKVPDYSHGHGHTDAGGADDQTIPKRRKAAGDDGNDSDEEAKRGKMLELGHTSPTGRGRGRGRGRGRGRGRGRAIQREGHHQETESEPCPSVQQVSQNTTDTNVAILDGTESNELPKNNVAVLPVDNSDSLLNIDLNANMNENDDKKASTVSNLTDTNPKAANPEAANPPVSEPPPTDSSHHEEIPGWSLSEVDKMAIDSMQLAQLGTRMDEDDEDYDEEG