Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88394.t1 | XP_003628014.1 | 96.7 | 305 | 10 | 0 | 1 | 305 | 1 | 305 | 4.50E-125 | 457.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88394.t1 | Q14919 | 58.0 | 88 | 37 | 0 | 2 | 89 | 5 | 92 | 4.3e-23 | 110.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88394.t1 | G7LID3 | 96.7 | 305 | 10 | 0 | 1 | 305 | 1 | 305 | 3.3e-125 | 457.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene88394.t1 | TF | NF-YC |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene88394 | MS.gene42075 | PPI |
| MS.gene88394 | MS.gene82237 | PPI |
| MS.gene88394 | MS.gene77045 | PPI |
| MS.gene88394 | MS.gene48819 | PPI |
| MS.gene76728 | MS.gene88394 | PPI |
| MS.gene87743 | MS.gene88394 | PPI |
| MS.gene87064 | MS.gene88394 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88394.t1 | MTR_8g041420 | 97.377 | 305 | 8 | 0 | 1 | 305 | 1 | 305 | 0.0 | 613 |
| MS.gene88394.t1 | MTR_3g012030 | 69.831 | 295 | 73 | 6 | 1 | 294 | 1 | 280 | 8.09e-128 | 366 |
| MS.gene88394.t1 | MTR_3g012030 | 67.986 | 278 | 73 | 6 | 18 | 294 | 1 | 263 | 3.02e-114 | 331 |
| MS.gene88394.t1 | MTR_3g012030 | 61.966 | 234 | 73 | 6 | 62 | 294 | 1 | 219 | 2.78e-79 | 241 |
| MS.gene88394.t1 | MTR_5g088760 | 46.557 | 305 | 136 | 9 | 1 | 293 | 1 | 290 | 1.28e-63 | 203 |
| MS.gene88394.t1 | MTR_5g088760 | 44.898 | 294 | 135 | 9 | 12 | 293 | 3 | 281 | 3.22e-55 | 181 |
| MS.gene88394.t1 | MTR_5g088760 | 43.750 | 288 | 135 | 9 | 18 | 293 | 1 | 273 | 7.30e-51 | 169 |
| MS.gene88394.t1 | MTR_2g023340 | 38.202 | 89 | 52 | 1 | 1 | 86 | 75 | 163 | 8.84e-12 | 64.3 |
| MS.gene88394.t1 | MTR_3g099180 | 37.975 | 79 | 49 | 0 | 8 | 86 | 55 | 133 | 1.35e-11 | 63.5 |
| MS.gene88394.t1 | MTR_3g099180 | 37.975 | 79 | 49 | 0 | 8 | 86 | 55 | 133 | 1.38e-11 | 63.5 |
| MS.gene88394.t1 | MTR_1g082660 | 37.179 | 78 | 49 | 0 | 9 | 86 | 102 | 179 | 1.81e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88394.t1 | AT3G12480 | 47.588 | 311 | 117 | 9 | 1 | 294 | 1 | 282 | 2.03e-69 | 218 |
| MS.gene88394.t1 | AT5G19490 | 62.857 | 140 | 39 | 4 | 1 | 137 | 1 | 130 | 8.85e-51 | 169 |
| MS.gene88394.t1 | AT1G54830 | 38.462 | 78 | 48 | 0 | 9 | 86 | 71 | 148 | 6.05e-12 | 64.3 |
| MS.gene88394.t1 | AT1G54830 | 38.462 | 78 | 48 | 0 | 9 | 86 | 71 | 148 | 6.05e-12 | 64.3 |
| MS.gene88394.t1 | AT1G54830 | 38.462 | 78 | 48 | 0 | 9 | 86 | 71 | 148 | 6.05e-12 | 64.3 |
| MS.gene88394.t1 | AT5G63470 | 37.975 | 79 | 49 | 0 | 8 | 86 | 78 | 156 | 1.33e-11 | 63.9 |
| MS.gene88394.t1 | AT5G63470 | 37.975 | 79 | 49 | 0 | 8 | 86 | 78 | 156 | 1.33e-11 | 63.9 |
| MS.gene88394.t1 | AT1G08970 | 38.462 | 78 | 48 | 0 | 9 | 86 | 81 | 158 | 1.45e-11 | 63.5 |
| MS.gene88394.t1 | AT1G08970 | 38.462 | 78 | 48 | 0 | 9 | 86 | 81 | 158 | 1.45e-11 | 63.5 |
| MS.gene88394.t1 | AT1G08970 | 38.462 | 78 | 48 | 0 | 9 | 86 | 81 | 158 | 1.45e-11 | 63.5 |
| MS.gene88394.t1 | AT1G08970 | 38.462 | 78 | 48 | 0 | 9 | 86 | 81 | 158 | 1.45e-11 | 63.5 |
| MS.gene88394.t1 | AT3G48590 | 37.975 | 79 | 49 | 0 | 8 | 86 | 65 | 143 | 1.50e-11 | 63.5 |
| MS.gene88394.t1 | AT1G56170 | 38.462 | 78 | 48 | 0 | 9 | 86 | 77 | 154 | 5.56e-11 | 61.2 |
| MS.gene88394.t1 | AT1G56170 | 38.462 | 78 | 48 | 0 | 9 | 86 | 77 | 154 | 5.56e-11 | 61.2 |
Find 85 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTGTATCTGTAGTATTT+TGG | 0.175216 | 8.3:-56796482 | None:intergenic |
| TGGCATTCAGATCAATATTA+AGG | 0.272737 | 8.3:-56796587 | None:intergenic |
| GGCTTCAGGATTAGCGGCTT+TGG | 0.273888 | 8.3:-56796670 | None:intergenic |
| AGAACAGCAACATTATTCTT+TGG | 0.296672 | 8.3:-56796540 | None:intergenic |
| CAGTCATCATGAAGAAATTC+CGG | 0.308338 | 8.3:+56796731 | MS.gene88394:CDS |
| TCACAAATGCAATGAATTCA+TGG | 0.326874 | 8.3:-56794850 | None:intergenic |
| GAACGAAAATGATGACAAAA+AGG | 0.328849 | 8.3:+56796614 | MS.gene88394:CDS |
| GCTTCAGGATTAGCGGCTTT+GGG | 0.341876 | 8.3:-56796669 | None:intergenic |
| GGTATCGAGCTTCTTCTTCA+TGG | 0.346522 | 8.3:-56793660 | None:intergenic |
| CCTTCTATTCCAGCTTGAGT+TGG | 0.372989 | 8.3:+56796320 | MS.gene88394:intron |
| ATTCATTACAGCTAAAGCTT+TGG | 0.394482 | 8.3:+56794764 | MS.gene88394:intron |
| CTTCTATTCCAGCTTGAGTT+GGG | 0.411737 | 8.3:+56796321 | MS.gene88394:intron |
| AGGGGAAGAGGCCGAGGTAG+AGG | 0.414973 | 8.3:+56796363 | MS.gene88394:CDS |
| AGCAACTCACAAACTAAAAC+AGG | 0.424990 | 8.3:-56794673 | None:intergenic |
| TCATGATGACTGCTGTCTGT+TGG | 0.443464 | 8.3:-56796720 | None:intergenic |
| CAGCACCACCAGCATCAGTA+TGG | 0.445315 | 8.3:-56795680 | None:intergenic |
| AGAGGCCGAGGTAGAGGAAG+AGG | 0.445372 | 8.3:+56796369 | MS.gene88394:CDS |
| TCAAAGAGAGGGACATCATC+AGG | 0.446129 | 8.3:+56796419 | MS.gene88394:CDS |
| GTTGGAGGAGGTTCAGAGAC+AGG | 0.449170 | 8.3:-56796702 | None:intergenic |
| CATCCATTCGCGTACCAAGC+TGG | 0.451375 | 8.3:-56796806 | None:intergenic |
| AATACTCACAGCAGGGAAAC+GGG | 0.451379 | 8.3:-56793681 | None:intergenic |
| AGTCATCATGAAGAAATTCC+GGG | 0.458892 | 8.3:+56796732 | MS.gene88394:CDS |
| AGTGAGTCAGAGTTATCAAC+AGG | 0.460372 | 8.3:-56796564 | None:intergenic |
| CGAGGTAGAGGAAGAGGAAG+AGG | 0.463525 | 8.3:+56796375 | MS.gene88394:CDS |
| ACAAATGTGGCTATACTTGA+TGG | 0.465433 | 8.3:+56796498 | MS.gene88394:CDS |
| CCATGACCATGGCTGTAGTC+AGG | 0.470467 | 8.3:-56795657 | None:intergenic |
| ATCCATTCGCGTACCAAGCT+GGG | 0.471142 | 8.3:-56796805 | None:intergenic |
| CGGCCTCTTCCCCTACCAGT+AGG | 0.471290 | 8.3:-56796354 | None:intergenic |
| AGAGGAAGAGGACGAGGTCG+AGG | 0.473350 | 8.3:+56796387 | MS.gene88394:CDS |
| AAATACTCACAGCAGGGAAA+CGG | 0.474814 | 8.3:-56793682 | None:intergenic |
| TGATGACTGCTGTCTGTTGG+AGG | 0.488755 | 8.3:-56796717 | None:intergenic |
| ATGAAATAACTCTTCAAAGA+GGG | 0.491656 | 8.3:+56794820 | MS.gene88394:CDS |
| GGCAAGCTGCATCGAATCAA+TGG | 0.495075 | 8.3:-56796784 | None:intergenic |
| GAAGAGTTATTTCATAAGTA+CGG | 0.508808 | 8.3:-56794812 | None:intergenic |
| TTGGGCCACACTAGCCCTAC+TGG | 0.513050 | 8.3:+56796339 | MS.gene88394:CDS |
| CCTTTCTGAGGTGGACAAGA+TGG | 0.513246 | 8.3:+56796761 | MS.gene88394:CDS |
| AGCCCTACTGGTAGGGGAAG+AGG | 0.516467 | 8.3:+56796351 | MS.gene88394:CDS |
| CCACACTAGCCCTACTGGTA+GGG | 0.519565 | 8.3:+56796344 | MS.gene88394:CDS |
| TCCGGGCTGGTCCCTTTCTG+AGG | 0.520532 | 8.3:+56796749 | MS.gene88394:CDS |
| GATGAAGATTATGACGAGGA+AGG | 0.523023 | 8.3:+56796834 | MS.gene88394:CDS |
| TAATGTATTTGACTTTCTGA+AGG | 0.523769 | 8.3:+56795617 | MS.gene88394:CDS |
| GGGCTGGTCCCTTTCTGAGG+TGG | 0.523889 | 8.3:+56796752 | MS.gene88394:CDS |
| TGGCTAACTTGCTGAACAGA+AGG | 0.535919 | 8.3:-56796462 | None:intergenic |
| CCCTACCAGTAGGGCTAGTG+TGG | 0.536396 | 8.3:-56796344 | None:intergenic |
| CCATCTTGTCCACCTCAGAA+AGG | 0.536812 | 8.3:-56796761 | None:intergenic |
| TCGATGCAGCTTGCCCAGCT+TGG | 0.538063 | 8.3:+56796792 | MS.gene88394:CDS |
| ACTGGTAGGGGAAGAGGCCG+AGG | 0.543075 | 8.3:+56796357 | MS.gene88394:CDS |
| ATGCAAGCTGATGAAGATGT+TGG | 0.543982 | 8.3:+56794631 | MS.gene88394:CDS |
| CATCTTGTCCACCTCAGAAA+GGG | 0.544706 | 8.3:-56796760 | None:intergenic |
| CAGTGATGAAGAAGCTAAGA+GGG | 0.545305 | 8.3:+56795841 | MS.gene88394:CDS |
| TTGGAGGAGGTTCAGAGACA+GGG | 0.547073 | 8.3:-56796701 | None:intergenic |
| TGCCCAGCTTGGTACGCGAA+TGG | 0.547995 | 8.3:+56796803 | MS.gene88394:CDS |
| TGACTGCTGTCTGTTGGAGG+AGG | 0.548420 | 8.3:-56796714 | None:intergenic |
| GGTCATGGCCATACTGATGC+TGG | 0.551049 | 8.3:+56795672 | MS.gene88394:CDS |
| CTCTTCCTCTTCCTCTACCT+CGG | 0.552926 | 8.3:-56796374 | None:intergenic |
| ATTAGCGGCTTCAGGATTAG+CGG | 0.555789 | 8.3:-56796676 | None:intergenic |
| CATGTTTGCAGGAAAGCTGC+AGG | 0.556670 | 8.3:+56795803 | MS.gene88394:intron |
| ACAGTGATGAAGAAGCTAAG+AGG | 0.558884 | 8.3:+56795840 | MS.gene88394:CDS |
| AGGAAAGCTGCAGGTGATGA+TGG | 0.561033 | 8.3:+56795812 | MS.gene88394:intron |
| ATGAAGATTATGACGAGGAA+GGG | 0.569841 | 8.3:+56796835 | MS.gene88394:CDS |
| CCTGACTACAGCCATGGTCA+TGG | 0.579794 | 8.3:+56795657 | MS.gene88394:CDS |
| GGCCTCTTCCCCTACCAGTA+GGG | 0.586705 | 8.3:-56796353 | None:intergenic |
| AGAGGAAGAGGAAGAGGACG+AGG | 0.587613 | 8.3:+56796381 | MS.gene88394:CDS |
| CACACTAGCCCTACTGGTAG+GGG | 0.591865 | 8.3:+56796345 | MS.gene88394:CDS |
| ATCATGAAGAAATTCCGGGC+TGG | 0.593923 | 8.3:+56796736 | MS.gene88394:CDS |
| ACCTCAGAAAGGGACCAGCC+CGG | 0.596293 | 8.3:-56796750 | None:intergenic |
| TATGAAATAACTCTTCAAAG+AGG | 0.600363 | 8.3:+56794819 | MS.gene88394:CDS |
| AGAAGCTAAGAGGGGCAAGA+TGG | 0.603158 | 8.3:+56795850 | MS.gene88394:CDS |
| TGAAATAACTCTTCAAAGAG+GGG | 0.609065 | 8.3:+56794821 | MS.gene88394:CDS |
| GGACGAGCTATTCAAAGAGA+GGG | 0.624122 | 8.3:+56796408 | MS.gene88394:CDS |
| AGAAGGACAAGGCTCAGACT+CGG | 0.625318 | 8.3:-56796445 | None:intergenic |
| AGGACGAGCTATTCAAAGAG+AGG | 0.625357 | 8.3:+56796407 | MS.gene88394:CDS |
| TCTGAAGGATGTAGTCAGCA+AGG | 0.625572 | 8.3:+56795632 | MS.gene88394:CDS |
| AAGGTTCCTGACTACAGCCA+TGG | 0.627628 | 8.3:+56795651 | MS.gene88394:CDS |
| TTTCATAAGTACGGTCACAA+AGG | 0.638025 | 8.3:-56794803 | None:intergenic |
| CATCAGTATGGCCATGACCA+TGG | 0.639178 | 8.3:-56795668 | None:intergenic |
| GCCACACTAGCCCTACTGGT+AGG | 0.654203 | 8.3:+56796343 | MS.gene88394:CDS |
| CATGGCCATACTGATGCTGG+TGG | 0.661901 | 8.3:+56795675 | MS.gene88394:CDS |
| TGGAGGAGGTTCAGAGACAG+GGG | 0.663154 | 8.3:-56796700 | None:intergenic |
| AGATGTTGGAAAGATAGCAT+TGG | 0.667342 | 8.3:+56794645 | MS.gene88394:CDS |
| AAATACTACAGATACAAATG+TGG | 0.667589 | 8.3:+56796485 | MS.gene88394:CDS |
| AGATGATGAAGATTATGACG+AGG | 0.685761 | 8.3:+56796830 | MS.gene88394:CDS |
| ACTTGCTGAACAGAAGGACA+AGG | 0.703007 | 8.3:-56796456 | None:intergenic |
| GGAGGAGGTTCAGAGACAGG+GGG | 0.712756 | 8.3:-56796699 | None:intergenic |
| AGTGATGAAGAAGCTAAGAG+GGG | 0.724764 | 8.3:+56795842 | MS.gene88394:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTAAGATAACATTTTT+TGG | + | chr8.3:56793838-56793857 | MS.gene88394:intron | 10.0% |
| !!! | TTTAATTTTAACCTAATTTT+TGG | + | chr8.3:56794047-56794066 | MS.gene88394:intron | 10.0% |
| !! | AAAAAAAATAATAGACTACT+TGG | - | chr8.3:56795496-56795515 | None:intergenic | 15.0% |
| !! | TCAAATCAAATTATCTAAAA+AGG | - | chr8.3:56795199-56795218 | None:intergenic | 15.0% |
| !!! | TACTTTTACTTCATTTTATT+TGG | + | chr8.3:56794005-56794024 | MS.gene88394:intron | 15.0% |
| !!! | TGAGTATATTTTTATTATGT+GGG | + | chr8.3:56793767-56793786 | MS.gene88394:intron | 15.0% |
| !!! | TTAATTTTGACCTAATTTTT+GGG | + | chr8.3:56793871-56793890 | MS.gene88394:intron | 15.0% |
| !!! | TTGAGTATATTTTTATTATG+TGG | + | chr8.3:56793766-56793785 | MS.gene88394:intron | 15.0% |
| !!! | TTTAATTTTGACCTAATTTT+TGG | + | chr8.3:56793870-56793889 | MS.gene88394:intron | 15.0% |
| !!! | TTTGTTATTTTATACTGTTT+TGG | + | chr8.3:56793736-56793755 | MS.gene88394:intron | 15.0% |
| !! | AAATCCAAAATTGGTATTAA+CGG | - | chr8.3:56794533-56794552 | None:intergenic | 20.0% |
| !! | AACAAAAAAGATCAAAACTT+TGG | - | chr8.3:56793722-56793741 | None:intergenic | 20.0% |
| !! | AAGTACAATATCCAAAAATT+AGG | - | chr8.3:56794061-56794080 | None:intergenic | 20.0% |
| !! | AATTCAAAGAAATCCAAAAT+TGG | - | chr8.3:56794542-56794561 | None:intergenic | 20.0% |
| !! | GTGTTTAAGAAATTAAAACA+CGG | - | chr8.3:56795910-56795929 | None:intergenic | 20.0% |
| !! | TAGTTAAAATTAATCAGTTC+AGG | - | chr8.3:56795458-56795477 | None:intergenic | 20.0% |
| !! | TCAAAAAATTCATAAGCATT+TGG | - | chr8.3:56795327-56795346 | None:intergenic | 20.0% |
| !! | TGAACCTAAAAATTTCATAT+TGG | + | chr8.3:56794321-56794340 | MS.gene88394:intron | 20.0% |
| !! | TGTTTAAGAAATTAAAACAC+GGG | - | chr8.3:56795909-56795928 | None:intergenic | 20.0% |
| !! | TTTATGTGCTTAATTGTATT+TGG | + | chr8.3:56793806-56793825 | MS.gene88394:intron | 20.0% |
| !!! | AACTCCAATATGAAATTTTT+AGG | - | chr8.3:56794328-56794347 | None:intergenic | 20.0% |
| !!! | ATATACAACCTTGTTTTTTA+TGG | - | chr8.3:56795998-56796017 | None:intergenic | 20.0% |
| !!! | TCATTTTATTTGGTAGTTTT+TGG | + | chr8.3:56794015-56794034 | MS.gene88394:intron | 20.0% |
| !!! | TGAAAGTATTGTTGTAATTT+GGG | - | chr8.3:56796039-56796058 | None:intergenic | 20.0% |
| !!! | TTGTTTTTTATGGAGAAAAA+AGG | - | chr8.3:56795988-56796007 | None:intergenic | 20.0% |
| !!! | TTTTATTGAACATGTGAAAA+TGG | + | chr8.3:56795223-56795242 | MS.gene88394:intron | 20.0% |
| !!! | TTTTTTCTCCATAAAAAACA+AGG | + | chr8.3:56795987-56796006 | MS.gene88394:intron | 20.0% |
| ! | AAAATTCATAAGCATTTGGT+TGG | - | chr8.3:56795323-56795342 | None:intergenic | 25.0% |
| ! | AAATACTACAGATACAAATG+TGG | + | chr8.3:56796485-56796504 | MS.gene88394:CDS | 25.0% |
| ! | AAGATTATCATCTACAACAA+TGG | + | chr8.3:56795134-56795153 | MS.gene88394:intron | 25.0% |
| ! | ATGAAATAACTCTTCAAAGA+GGG | + | chr8.3:56794820-56794839 | MS.gene88394:CDS | 25.0% |
| ! | ATTTGTCGAAATTTCATGTT+TGG | + | chr8.3:56796077-56796096 | MS.gene88394:intron | 25.0% |
| ! | CATCATAAAACCCAAAAATT+AGG | - | chr8.3:56793884-56793903 | None:intergenic | 25.0% |
| ! | GTTTAAGAAATTAAAACACG+GGG | - | chr8.3:56795908-56795927 | None:intergenic | 25.0% |
| ! | TAAAAAGGAAAACATCTAGA+AGG | - | chr8.3:56795184-56795203 | None:intergenic | 25.0% |
| ! | TAACTACATGTATATCAGAA+AGG | - | chr8.3:56795768-56795787 | None:intergenic | 25.0% |
| ! | TATGAAATAACTCTTCAAAG+AGG | + | chr8.3:56794819-56794838 | MS.gene88394:CDS | 25.0% |
| ! | TGTTGAAGATAAAATGAGTT+TGG | - | chr8.3:56795533-56795552 | None:intergenic | 25.0% |
| ! | TTCTAATATCTGTTCTTGTA+TGG | + | chr8.3:56795361-56795380 | MS.gene88394:intron | 25.0% |
| !! | AATTTCATGTTTGGAATACT+TGG | + | chr8.3:56796086-56796105 | MS.gene88394:intron | 25.0% |
| !! | CATTTGTATCTGTAGTATTT+TGG | - | chr8.3:56796485-56796504 | None:intergenic | 25.0% |
| !! | GAAGAGTTATTTCATAAGTA+CGG | - | chr8.3:56794815-56794834 | None:intergenic | 25.0% |
| !! | TAATGTATTTGACTTTCTGA+AGG | + | chr8.3:56795617-56795636 | MS.gene88394:CDS | 25.0% |
| !!! | AATTGCTTTTTCCTAGAATA+AGG | - | chr8.3:56796270-56796289 | None:intergenic | 25.0% |
| !!! | ATGCTTGATTATTGATTTGA+TGG | + | chr8.3:56794108-56794127 | MS.gene88394:intron | 25.0% |
| !!! | GTGAAAGTATTGTTGTAATT+TGG | - | chr8.3:56796040-56796059 | None:intergenic | 25.0% |
| !!! | TGATGTTATCATTTTTTAGC+TGG | + | chr8.3:56794139-56794158 | MS.gene88394:intron | 25.0% |
| !!! | TTACCTTTTTTGTAGTTGTT+TGG | + | chr8.3:56794356-56794375 | MS.gene88394:intron | 25.0% |
| AAATAATAGACTACTTGGAC+AGG | - | chr8.3:56795491-56795510 | None:intergenic | 30.0% | |
| AAGCCAAACAACTACAAAAA+AGG | - | chr8.3:56794362-56794381 | None:intergenic | 30.0% | |
| ACATGAAATTTCGACAAATG+AGG | - | chr8.3:56796076-56796095 | None:intergenic | 30.0% | |
| AGAAACACTATTTGATGTGT+TGG | + | chr8.3:56794574-56794593 | MS.gene88394:intron | 30.0% | |
| AGAACAGCAACATTATTCTT+TGG | - | chr8.3:56796543-56796562 | None:intergenic | 30.0% | |
| AGCTTGATTAATGAAGTTGA+TGG | + | chr8.3:56793908-56793927 | MS.gene88394:intron | 30.0% | |
| ATAAAATGAGTTTGGAAGGA+AGG | - | chr8.3:56795525-56795544 | None:intergenic | 30.0% | |
| ATGCTTGATCAAATAATGCA+CGG | + | chr8.3:56795421-56795440 | MS.gene88394:intron | 30.0% | |
| ATTCATTACAGCTAAAGCTT+TGG | + | chr8.3:56794764-56794783 | MS.gene88394:intron | 30.0% | |
| ATTCATTCCTACAAGATTTC+AGG | - | chr8.3:56796207-56796226 | None:intergenic | 30.0% | |
| GAACGAAAATGATGACAAAA+AGG | + | chr8.3:56796614-56796633 | MS.gene88394:CDS | 30.0% | |
| GAAGATAAAATGAGTTTGGA+AGG | - | chr8.3:56795529-56795548 | None:intergenic | 30.0% | |
| TCACAAATGCAATGAATTCA+TGG | - | chr8.3:56794853-56794872 | None:intergenic | 30.0% | |
| TGAAATAACTCTTCAAAGAG+GGG | + | chr8.3:56794821-56794840 | MS.gene88394:CDS | 30.0% | |
| TGGCATTCAGATCAATATTA+AGG | - | chr8.3:56796590-56796609 | None:intergenic | 30.0% | |
| TTAGCTGCTTAGCTTAATTA+TGG | + | chr8.3:56793976-56793995 | MS.gene88394:intron | 30.0% | |
| ! | AAGACTTCAAACCTTCTTTT+TGG | - | chr8.3:56795720-56795739 | None:intergenic | 30.0% |
| ! | AGTTAGTTTGACCACTAAAA+TGG | - | chr8.3:56794911-56794930 | None:intergenic | 30.0% |
| ! | ATTATTTGATCAAGCATTGC+AGG | - | chr8.3:56795418-56795437 | None:intergenic | 30.0% |
| ! | CTTTTTCCTAGAATAAGGAA+TGG | - | chr8.3:56796265-56796284 | None:intergenic | 30.0% |
| ! | GCTTGATTAATGAAGTTGAT+GGG | + | chr8.3:56793909-56793928 | MS.gene88394:intron | 30.0% |
| ! | GTAGTTGTTTGGCTTAATTT+AGG | + | chr8.3:56794367-56794386 | MS.gene88394:intron | 30.0% |
| ! | GTCATCATTTTCGTTCATAT+TGG | - | chr8.3:56796610-56796629 | None:intergenic | 30.0% |
| ! | GTTAGTTTGACCACTAAAAT+GGG | - | chr8.3:56794910-56794929 | None:intergenic | 30.0% |
| !! | TTCAAACCTTCTTTTTGGAA+TGG | - | chr8.3:56795715-56795734 | None:intergenic | 30.0% |
| !! | TTTTGAGTGATGTGGTATTA+TGG | + | chr8.3:56793932-56793951 | MS.gene88394:intron | 30.0% |
| !!! | TTTTAGGTTCATAGACTATG+TGG | - | chr8.3:56794312-56794331 | None:intergenic | 30.0% |
| AAACAGAAAATACTCACAGC+AGG | - | chr8.3:56793692-56793711 | None:intergenic | 35.0% | |
| AACAGAAAATACTCACAGCA+GGG | - | chr8.3:56793691-56793710 | None:intergenic | 35.0% | |
| ACAAATGTGGCTATACTTGA+TGG | + | chr8.3:56796498-56796517 | MS.gene88394:CDS | 35.0% | |
| ACATGTTGTTATGCTCAATG+TGG | - | chr8.3:56794225-56794244 | None:intergenic | 35.0% | |
| ACTAACTCAAGAAATCAGAG+CGG | + | chr8.3:56794924-56794943 | MS.gene88394:intron | 35.0% | |
| AGACAATCCTGAAATCTTGT+AGG | + | chr8.3:56796197-56796216 | MS.gene88394:intron | 35.0% | |
| AGATGATGAAGATTATGACG+AGG | + | chr8.3:56796830-56796849 | MS.gene88394:CDS | 35.0% | |
| AGATGTTGGAAAGATAGCAT+TGG | + | chr8.3:56794645-56794664 | MS.gene88394:CDS | 35.0% | |
| AGCAACTCACAAACTAAAAC+AGG | - | chr8.3:56794676-56794695 | None:intergenic | 35.0% | |
| AGTCATCATGAAGAAATTCC+GGG | + | chr8.3:56796732-56796751 | MS.gene88394:CDS | 35.0% | |
| ATCAGACCATTCCAAAAAGA+AGG | + | chr8.3:56795706-56795725 | MS.gene88394:CDS | 35.0% | |
| ATCTGTTCTTGTATGGCTTA+AGG | + | chr8.3:56795368-56795387 | MS.gene88394:intron | 35.0% | |
| ATGAAGATTATGACGAGGAA+GGG | + | chr8.3:56796835-56796854 | MS.gene88394:CDS | 35.0% | |
| CAGTCATCATGAAGAAATTC+CGG | + | chr8.3:56796731-56796750 | MS.gene88394:CDS | 35.0% | |
| CCAAAATTGGTATTAACGGT+GGG | - | chr8.3:56794529-56794548 | None:intergenic | 35.0% | |
| GTTTACATTTGACACTCGTT+AGG | - | chr8.3:56795571-56795590 | None:intergenic | 35.0% | |
| TCCAAAATTGGTATTAACGG+TGG | - | chr8.3:56794530-56794549 | None:intergenic | 35.0% | |
| TGAACTCAATTTATCGTCAG+TGG | + | chr8.3:56795062-56795081 | MS.gene88394:intron | 35.0% | |
| TGTGATTGATACTGACGAAA+TGG | - | chr8.3:56795942-56795961 | None:intergenic | 35.0% | |
| TGTTGGAAACATAACTTTGC+AGG | + | chr8.3:56794591-56794610 | MS.gene88394:intron | 35.0% | |
| TTCAAGCCATTCCTTATTCT+AGG | + | chr8.3:56796256-56796275 | MS.gene88394:intron | 35.0% | |
| TTTCATAAGTACGGTCACAA+AGG | - | chr8.3:56794806-56794825 | None:intergenic | 35.0% | |
| ! | TCTCTGATTTCCCATTTTAG+TGG | + | chr8.3:56794897-56794916 | MS.gene88394:intron | 35.0% |
| ! | TTGTCTTTTGCTTGCACAAA+TGG | - | chr8.3:56796183-56796202 | None:intergenic | 35.0% |
| !!! | CATTTTTTAGCTGGTTAGCT+TGG | + | chr8.3:56794148-56794167 | MS.gene88394:intron | 35.0% |
| !!! | GTTATGTTGACTTTTGTGTC+CGG | - | chr8.3:56794423-56794442 | None:intergenic | 35.0% |
| AAATACTCACAGCAGGGAAA+CGG | - | chr8.3:56793685-56793704 | None:intergenic | 40.0% | |
| AATCCAACATGTGTCAGTGT+TGG | - | chr8.3:56794481-56794500 | None:intergenic | 40.0% | |
| ACAGTGATGAAGAAGCTAAG+AGG | + | chr8.3:56795840-56795859 | MS.gene88394:CDS | 40.0% | |
| AGTGAGTCAGAGTTATCAAC+AGG | - | chr8.3:56796567-56796586 | None:intergenic | 40.0% | |
| AGTGATGAAGAAGCTAAGAG+GGG | + | chr8.3:56795842-56795861 | MS.gene88394:CDS | 40.0% | |
| ATGCAAGCTGATGAAGATGT+TGG | + | chr8.3:56794631-56794650 | MS.gene88394:CDS | 40.0% | |
| CAGTGATGAAGAAGCTAAGA+GGG | + | chr8.3:56795841-56795860 | MS.gene88394:CDS | 40.0% | |
| CTGACACATGTTGGATTCTT+TGG | + | chr8.3:56794484-56794503 | MS.gene88394:intron | 40.0% | |
| CTTCTATTCCAGCTTGAGTT+GGG | + | chr8.3:56796321-56796340 | MS.gene88394:intron | 40.0% | |
| CTTTCCTGCAAACATGGTTT+AGG | - | chr8.3:56795799-56795818 | None:intergenic | 40.0% | |
| GAAACATAACTTTGCAGGCT+CGG | + | chr8.3:56794596-56794615 | MS.gene88394:intron | 40.0% | |
| GATCAAATAATGCACGGCTT+GGG | + | chr8.3:56795427-56795446 | MS.gene88394:intron | 40.0% | |
| GATGAAGATTATGACGAGGA+AGG | + | chr8.3:56796834-56796853 | MS.gene88394:CDS | 40.0% | |
| GGGGCTTTCACACTAATATA+AGG | - | chr8.3:56795889-56795908 | None:intergenic | 40.0% | |
| TGATCAAATAATGCACGGCT+TGG | + | chr8.3:56795426-56795445 | MS.gene88394:intron | 40.0% | |
| TTATCGTCAGTGGTCATTGT+TGG | + | chr8.3:56795072-56795091 | MS.gene88394:intron | 40.0% | |
| ! | AACTTTAAGCTGCTGTTTGC+TGG | + | chr8.3:56794720-56794739 | MS.gene88394:intron | 40.0% |
| ! | CCCACCGTTAATACCAATTT+TGG | + | chr8.3:56794526-56794545 | MS.gene88394:intron | 40.0% |
| !! | TTAGCTGGTTAGCTTGGTTT+GGG | + | chr8.3:56794154-56794173 | MS.gene88394:intron | 40.0% |
| !! | TTTAGCTGGTTAGCTTGGTT+TGG | + | chr8.3:56794153-56794172 | MS.gene88394:intron | 40.0% |
| !!! | TTGATGGGTTTTGAGTGATG+TGG | + | chr8.3:56793924-56793943 | MS.gene88394:intron | 40.0% |
| AATACTCACAGCAGGGAAAC+GGG | - | chr8.3:56793684-56793703 | None:intergenic | 45.0% | |
| AGAGCGGTGTGTCTCTATAA+TGG | + | chr8.3:56794940-56794959 | MS.gene88394:intron | 45.0% | |
| AGGACGAGCTATTCAAAGAG+AGG | + | chr8.3:56796407-56796426 | MS.gene88394:CDS | 45.0% | |
| ATCATGAAGAAATTCCGGGC+TGG | + | chr8.3:56796736-56796755 | MS.gene88394:CDS | 45.0% | |
| ATTAGCGGCTTCAGGATTAG+CGG | - | chr8.3:56796679-56796698 | None:intergenic | 45.0% | |
| CAATATCTGCAGCCAATGAG+CGG | + | chr8.3:56795254-56795273 | MS.gene88394:intron | 45.0% | |
| CATCTTGTCCACCTCAGAAA+GGG | - | chr8.3:56796763-56796782 | None:intergenic | 45.0% | |
| CCAACTCAAGCTGGAATAGA+AGG | - | chr8.3:56796323-56796342 | None:intergenic | 45.0% | |
| CCTTCTATTCCAGCTTGAGT+TGG | + | chr8.3:56796320-56796339 | MS.gene88394:intron | 45.0% | |
| GCATGTGTCAGTATCGTGTT+TGG | + | chr8.3:56794444-56794463 | MS.gene88394:intron | 45.0% | |
| GGACGAGCTATTCAAAGAGA+GGG | + | chr8.3:56796408-56796427 | MS.gene88394:CDS | 45.0% | |
| GTGAAGCACACACACTATAC+CGG | + | chr8.3:56794401-56794420 | MS.gene88394:intron | 45.0% | |
| TCAAAGAGAGGGACATCATC+AGG | + | chr8.3:56796419-56796438 | MS.gene88394:CDS | 45.0% | |
| TCATAGACTATGTGGCACTG+AGG | - | chr8.3:56794304-56794323 | None:intergenic | 45.0% | |
| TCATGATGACTGCTGTCTGT+TGG | - | chr8.3:56796723-56796742 | None:intergenic | 45.0% | |
| TCTGAAGGATGTAGTCAGCA+AGG | + | chr8.3:56795632-56795651 | MS.gene88394:CDS | 45.0% | |
| TGCACCTAAACCATGTTTGC+AGG | + | chr8.3:56795792-56795811 | MS.gene88394:intron | 45.0% | |
| TGTCCAACACTGACACATGT+TGG | + | chr8.3:56794475-56794494 | MS.gene88394:intron | 45.0% | |
| TGTCCTACATCGACACATGT+TGG | + | chr8.3:56794275-56794294 | MS.gene88394:intron | 45.0% | |
| ! | ACTTGCTGAACAGAAGGACA+AGG | - | chr8.3:56796459-56796478 | None:intergenic | 45.0% |
| ! | CATCCAACATGTGTCGATGT+AGG | - | chr8.3:56794281-56794300 | None:intergenic | 45.0% |
| !! | CAGTATCGTGTTTGGTGTCT+AGG | + | chr8.3:56794452-56794471 | MS.gene88394:intron | 45.0% |
| !! | TGGCTAACTTGCTGAACAGA+AGG | - | chr8.3:56796465-56796484 | None:intergenic | 45.0% |
| AAGGTTCCTGACTACAGCCA+TGG | + | chr8.3:56795651-56795670 | MS.gene88394:CDS | 50.0% | |
| AGAAGCTAAGAGGGGCAAGA+TGG | + | chr8.3:56795850-56795869 | MS.gene88394:CDS | 50.0% | |
| AGAAGGACAAGGCTCAGACT+CGG | - | chr8.3:56796448-56796467 | None:intergenic | 50.0% | |
| AGGAAAGCTGCAGGTGATGA+TGG | + | chr8.3:56795812-56795831 | MS.gene88394:intron | 50.0% | |
| ATCCATTCGCGTACCAAGCT+GGG | - | chr8.3:56796808-56796827 | None:intergenic | 50.0% | |
| CATCAGTATGGCCATGACCA+TGG | - | chr8.3:56795671-56795690 | None:intergenic | 50.0% | |
| CATGTTTGCAGGAAAGCTGC+AGG | + | chr8.3:56795803-56795822 | MS.gene88394:intron | 50.0% | |
| CCATCTTGTCCACCTCAGAA+AGG | - | chr8.3:56796764-56796783 | None:intergenic | 50.0% | |
| CTCTTCCTCTTCCTCTACCT+CGG | - | chr8.3:56796377-56796396 | None:intergenic | 50.0% | |
| CTGCAGCTTTCCTGCAAACA+TGG | - | chr8.3:56795805-56795824 | None:intergenic | 50.0% | |
| GGCAAGCTGCATCGAATCAA+TGG | - | chr8.3:56796787-56796806 | None:intergenic | 50.0% | |
| TCGATGTAGGACACCTGACA+CGG | - | chr8.3:56794268-56794287 | None:intergenic | 50.0% | |
| TGATGACTGCTGTCTGTTGG+AGG | - | chr8.3:56796720-56796739 | None:intergenic | 50.0% | |
| TGTCACATGAGACCGCTCAT+TGG | - | chr8.3:56795269-56795288 | None:intergenic | 50.0% | |
| TTCAGAGACAGGGGGATTAG+CGG | - | chr8.3:56796694-56796713 | None:intergenic | 50.0% | |
| TTGGAGGAGGTTCAGAGACA+GGG | - | chr8.3:56796704-56796723 | None:intergenic | 50.0% | |
| ! | GCTTCAGGATTAGCGGCTTT+GGG | - | chr8.3:56796672-56796691 | None:intergenic | 50.0% |
| !! | CCTTTCTGAGGTGGACAAGA+TGG | + | chr8.3:56796761-56796780 | MS.gene88394:CDS | 50.0% |
| AGAGGAAGAGGAAGAGGACG+AGG | + | chr8.3:56796381-56796400 | MS.gene88394:CDS | 55.0% | |
| CACACTAGCCCTACTGGTAG+GGG | + | chr8.3:56796345-56796364 | MS.gene88394:CDS | 55.0% | |
| CAGCACCACCAGCATCAGTA+TGG | - | chr8.3:56795683-56795702 | None:intergenic | 55.0% | |
| CATCCATTCGCGTACCAAGC+TGG | - | chr8.3:56796809-56796828 | None:intergenic | 55.0% | |
| CATGGCCATACTGATGCTGG+TGG | + | chr8.3:56795675-56795694 | MS.gene88394:CDS | 55.0% | |
| CCACACTAGCCCTACTGGTA+GGG | + | chr8.3:56796344-56796363 | MS.gene88394:CDS | 55.0% | |
| CCATGACCATGGCTGTAGTC+AGG | - | chr8.3:56795660-56795679 | None:intergenic | 55.0% | |
| CCTGACTACAGCCATGGTCA+TGG | + | chr8.3:56795657-56795676 | MS.gene88394:CDS | 55.0% | |
| CGAGGTAGAGGAAGAGGAAG+AGG | + | chr8.3:56796375-56796394 | MS.gene88394:CDS | 55.0% | |
| GGTCATGGCCATACTGATGC+TGG | + | chr8.3:56795672-56795691 | MS.gene88394:CDS | 55.0% | |
| GTTGGAGGAGGTTCAGAGAC+AGG | - | chr8.3:56796705-56796724 | None:intergenic | 55.0% | |
| TAGTGTGGCCCAACTCAAGC+TGG | - | chr8.3:56796332-56796351 | None:intergenic | 55.0% | |
| TCGTGTCTAGTGTCCGTGTC+AGG | + | chr8.3:56794252-56794271 | MS.gene88394:intron | 55.0% | |
| TGACTGCTGTCTGTTGGAGG+AGG | - | chr8.3:56796717-56796736 | None:intergenic | 55.0% | |
| TGGAGGAGGTTCAGAGACAG+GGG | - | chr8.3:56796703-56796722 | None:intergenic | 55.0% | |
| ! | GGCTTCAGGATTAGCGGCTT+TGG | - | chr8.3:56796673-56796692 | None:intergenic | 55.0% |
| ACCTCAGAAAGGGACCAGCC+CGG | - | chr8.3:56796753-56796772 | None:intergenic | 60.0% | |
| AGAGGAAGAGGACGAGGTCG+AGG | + | chr8.3:56796387-56796406 | MS.gene88394:CDS | 60.0% | |
| AGAGGCCGAGGTAGAGGAAG+AGG | + | chr8.3:56796369-56796388 | MS.gene88394:CDS | 60.0% | |
| AGCCCTACTGGTAGGGGAAG+AGG | + | chr8.3:56796351-56796370 | MS.gene88394:CDS | 60.0% | |
| GCCACACTAGCCCTACTGGT+AGG | + | chr8.3:56796343-56796362 | MS.gene88394:CDS | 60.0% | |
| GGAGGAGGTTCAGAGACAGG+GGG | - | chr8.3:56796702-56796721 | None:intergenic | 60.0% | |
| GGCCTCTTCCCCTACCAGTA+GGG | - | chr8.3:56796356-56796375 | None:intergenic | 60.0% | |
| TCGATGCAGCTTGCCCAGCT+TGG | + | chr8.3:56796792-56796811 | MS.gene88394:CDS | 60.0% | |
| TGCCCAGCTTGGTACGCGAA+TGG | + | chr8.3:56796803-56796822 | MS.gene88394:CDS | 60.0% | |
| TTGGGCCACACTAGCCCTAC+TGG | + | chr8.3:56796339-56796358 | MS.gene88394:CDS | 60.0% | |
| ! | ACAGGGGGATTAGCGGCTTC+AGG | - | chr8.3:56796687-56796706 | None:intergenic | 60.0% |
| ! | CCCTACCAGTAGGGCTAGTG+TGG | - | chr8.3:56796347-56796366 | None:intergenic | 60.0% |
| ACTGGTAGGGGAAGAGGCCG+AGG | + | chr8.3:56796357-56796376 | MS.gene88394:CDS | 65.0% | |
| AGGGGAAGAGGCCGAGGTAG+AGG | + | chr8.3:56796363-56796382 | MS.gene88394:CDS | 65.0% | |
| CGGCCTCTTCCCCTACCAGT+AGG | - | chr8.3:56796357-56796376 | None:intergenic | 65.0% | |
| !! | GGGCTGGTCCCTTTCTGAGG+TGG | + | chr8.3:56796752-56796771 | MS.gene88394:CDS | 65.0% |
| !! | TCCGGGCTGGTCCCTTTCTG+AGG | + | chr8.3:56796749-56796768 | MS.gene88394:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 56793662 | 56796860 | 56793662 | ID=MS.gene88394 |
| chr8.3 | mRNA | 56793662 | 56796860 | 56793662 | ID=MS.gene88394.t1;Parent=MS.gene88394 |
| chr8.3 | exon | 56793662 | 56793694 | 56793662 | ID=MS.gene88394.t1.exon1;Parent=MS.gene88394.t1 |
| chr8.3 | CDS | 56793662 | 56793694 | 56793662 | ID=cds.MS.gene88394.t1;Parent=MS.gene88394.t1 |
| chr8.3 | exon | 56794613 | 56794685 | 56794613 | ID=MS.gene88394.t1.exon2;Parent=MS.gene88394.t1 |
| chr8.3 | CDS | 56794613 | 56794685 | 56794613 | ID=cds.MS.gene88394.t1;Parent=MS.gene88394.t1 |
| chr8.3 | exon | 56794775 | 56794868 | 56794775 | ID=MS.gene88394.t1.exon3;Parent=MS.gene88394.t1 |
| chr8.3 | CDS | 56794775 | 56794868 | 56794775 | ID=cds.MS.gene88394.t1;Parent=MS.gene88394.t1 |
| chr8.3 | exon | 56795596 | 56795727 | 56795596 | ID=MS.gene88394.t1.exon4;Parent=MS.gene88394.t1 |
| chr8.3 | CDS | 56795596 | 56795727 | 56795596 | ID=cds.MS.gene88394.t1;Parent=MS.gene88394.t1 |
| chr8.3 | exon | 56795814 | 56795871 | 56795814 | ID=MS.gene88394.t1.exon5;Parent=MS.gene88394.t1 |
| chr8.3 | CDS | 56795814 | 56795871 | 56795814 | ID=cds.MS.gene88394.t1;Parent=MS.gene88394.t1 |
| chr8.3 | exon | 56796333 | 56796860 | 56796333 | ID=MS.gene88394.t1.exon6;Parent=MS.gene88394.t1 |
| chr8.3 | CDS | 56796333 | 56796860 | 56796333 | ID=cds.MS.gene88394.t1;Parent=MS.gene88394.t1 |
| Gene Sequence |
| Protein sequence |
