Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88406.t1 | XP_024628675.1 | 96.9 | 382 | 12 | 0 | 1 | 382 | 1 | 382 | 3.20E-213 | 750.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88406.t1 | Q8L518 | 67.4 | 337 | 107 | 2 | 21 | 357 | 7 | 340 | 7.5e-134 | 478.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88406.t1 | G7LIC4 | 96.3 | 382 | 12 | 1 | 1 | 382 | 1 | 380 | 8.3e-211 | 742.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene88406 | MS.gene58299 | PPI |
| MS.gene57514 | MS.gene88406 | PPI |
| MS.gene88406 | MS.gene019492 | PPI |
| MS.gene88406 | MS.gene83346 | PPI |
| MS.gene36871 | MS.gene88406 | PPI |
| MS.gene88406 | MS.gene067354 | PPI |
| MS.gene42220 | MS.gene88406 | PPI |
| MS.gene038844 | MS.gene88406 | PPI |
| MS.gene045848 | MS.gene88406 | PPI |
| MS.gene88406 | MS.gene27633 | PPI |
| MS.gene88406 | MS.gene50958 | PPI |
| MS.gene88406 | MS.gene52160 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88406.t1 | MTR_8g041330 | 96.335 | 382 | 12 | 1 | 1 | 382 | 1 | 380 | 0.0 | 763 |
| MS.gene88406.t1 | MTR_3g013430 | 73.626 | 364 | 93 | 1 | 19 | 382 | 113 | 473 | 0.0 | 560 |
| MS.gene88406.t1 | MTR_1g097850 | 63.158 | 323 | 104 | 2 | 36 | 357 | 16 | 324 | 1.50e-153 | 437 |
| MS.gene88406.t1 | MTR_6g039820 | 61.610 | 323 | 123 | 1 | 36 | 357 | 16 | 338 | 2.39e-152 | 433 |
| MS.gene88406.t1 | MTR_1g097850 | 61.290 | 248 | 81 | 2 | 36 | 282 | 16 | 249 | 9.61e-109 | 320 |
| MS.gene88406.t1 | MTR_6g040230 | 65.455 | 220 | 76 | 0 | 138 | 357 | 272 | 491 | 6.11e-105 | 318 |
| MS.gene88406.t1 | MTR_8g041220 | 90.323 | 93 | 8 | 1 | 257 | 349 | 40 | 131 | 3.61e-54 | 175 |
| MS.gene88406.t1 | MTR_2g054370 | 34.146 | 328 | 201 | 6 | 41 | 362 | 48 | 366 | 8.73e-54 | 182 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88406.t1 | AT1G74320 | 67.372 | 331 | 108 | 0 | 34 | 364 | 17 | 347 | 2.18e-173 | 487 |
| MS.gene88406.t1 | AT1G71697 | 61.846 | 325 | 122 | 2 | 35 | 357 | 16 | 340 | 6.36e-154 | 437 |
| MS.gene88406.t1 | AT4G09760 | 59.394 | 330 | 131 | 3 | 35 | 362 | 14 | 342 | 5.89e-150 | 427 |
| MS.gene88406.t1 | AT4G09760 | 59.394 | 330 | 131 | 3 | 35 | 362 | 14 | 342 | 5.89e-150 | 427 |
| MS.gene88406.t1 | AT4G09760 | 54.502 | 211 | 93 | 3 | 35 | 243 | 14 | 223 | 3.25e-80 | 246 |
| MS.gene88406.t1 | AT4G09760 | 53.061 | 196 | 89 | 3 | 35 | 228 | 14 | 208 | 2.84e-71 | 222 |
| MS.gene88406.t1 | AT2G26830 | 35.077 | 325 | 194 | 7 | 40 | 357 | 45 | 359 | 1.42e-54 | 184 |
Find 76 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAATCATTAGCAAATAAA+TGG | 0.176333 | 8.3:+56915003 | MS.gene88406:CDS |
| TTGGAAGTTATTCCTCTTAA+AGG | 0.179413 | 8.3:+56915050 | MS.gene88406:CDS |
| AACAAAGGTTTCAAGATTAT+TGG | 0.220886 | 8.3:+56917112 | MS.gene88406:CDS |
| CACTTGCAAGTCATCTCTTA+TGG | 0.223466 | 8.3:+56916952 | MS.gene88406:CDS |
| GGACAAAGAAATCTCTCTTT+TGG | 0.232703 | 8.3:+56916180 | MS.gene88406:CDS |
| TTCCCAAAGGTACACATTCT+TGG | 0.254559 | 8.3:-56915964 | None:intergenic |
| GTCATCTCTTATGGGGCCTT+TGG | 0.259535 | 8.3:+56916961 | MS.gene88406:CDS |
| TCATCTCTTATGGGGCCTTT+GGG | 0.283838 | 8.3:+56916962 | MS.gene88406:CDS |
| ATGAGGTATTCCAGATAAAA+TGG | 0.287632 | 8.3:+56915084 | MS.gene88406:CDS |
| TGCCACAATGATTTACAATA+TGG | 0.290864 | 8.3:+56916241 | MS.gene88406:CDS |
| AAGGTTCTTGTTAGAATCTA+TGG | 0.326658 | 8.3:+56915134 | MS.gene88406:CDS |
| TAAAGAGAAACTCACTATTA+TGG | 0.327266 | 8.3:-56916299 | None:intergenic |
| TGGAAGTTATTCCTCTTAAA+GGG | 0.341436 | 8.3:+56915051 | MS.gene88406:CDS |
| AATCATCATTTGAGCCCTAA+TGG | 0.343431 | 8.3:+56917144 | MS.gene88406:CDS |
| ATGAAACATCTCAACTTCTT+CGG | 0.351016 | 8.3:-56916146 | None:intergenic |
| TGAAACATCTCAACTTCTTC+GGG | 0.352791 | 8.3:-56916145 | None:intergenic |
| ATCGTGGAACTCCTTCATTT+TGG | 0.361466 | 8.3:-56915925 | None:intergenic |
| AATAGATGGATCGCGCATAT+CGG | 0.365704 | 8.3:-56915886 | None:intergenic |
| GTTCCAAGAATGTGTACCTT+TGG | 0.367660 | 8.3:+56915961 | MS.gene88406:CDS |
| GGGCCTTTGGGGAATCGTTT+CGG | 0.375379 | 8.3:+56916974 | MS.gene88406:CDS |
| ACTTGCAAGTCATCTCTTAT+GGG | 0.383444 | 8.3:+56916953 | MS.gene88406:CDS |
| TGTACCTTTGGGAAAGATTA+CGG | 0.391573 | 8.3:+56915973 | MS.gene88406:CDS |
| TTCCAAGAATGTGTACCTTT+GGG | 0.404242 | 8.3:+56915962 | MS.gene88406:CDS |
| TTATCATGGGAAGATCCATT+AGG | 0.409974 | 8.3:-56917159 | None:intergenic |
| CAGACATATTTGAGTTCATC+AGG | 0.413968 | 8.3:+56916634 | MS.gene88406:CDS |
| ATAGATGGATCGCGCATATC+GGG | 0.423467 | 8.3:-56915885 | None:intergenic |
| CCTATGCGTTGAGGAGTTAC+CGG | 0.423524 | 8.3:-56916214 | None:intergenic |
| GTCAAGAATATGTGGAGTTT+CGG | 0.423578 | 8.3:-56916484 | None:intergenic |
| TATCATGGGAAGATCCATTA+GGG | 0.434771 | 8.3:-56917158 | None:intergenic |
| TACCAGCTATAACATTATCA+TGG | 0.444294 | 8.3:-56917173 | None:intergenic |
| GCTTCTCTTGATAGATTTGG+AGG | 0.453437 | 8.3:+56916594 | MS.gene88406:intron |
| TTTGCTATATCATATGCAAC+TGG | 0.459381 | 8.3:-56916429 | None:intergenic |
| GCTATAAGAGCAGAAATAGA+TGG | 0.462638 | 8.3:-56915900 | None:intergenic |
| AAATAAATGGGAAAATGTAT+TGG | 0.463368 | 8.3:+56915016 | MS.gene88406:CDS |
| TTGGTCATTGCCCCTTTAAG+AGG | 0.472910 | 8.3:-56915062 | None:intergenic |
| AGGGACCTCGTTTGCTAGGA+AGG | 0.472952 | 8.3:+56915228 | MS.gene88406:CDS |
| GAAATCATTAGCAAATAAAT+GGG | 0.476701 | 8.3:+56915004 | MS.gene88406:CDS |
| TCGCGCGGATGAACTCTTCA+AGG | 0.476866 | 8.3:-56915265 | None:intergenic |
| TTCGCATTCATCTCAAAGAA+TGG | 0.478784 | 8.3:+56915203 | MS.gene88406:CDS |
| TCCCATGATAATGTTATAGC+TGG | 0.493300 | 8.3:+56917171 | MS.gene88406:CDS |
| CGGTAACTCCTCAACGCATA+GGG | 0.494288 | 8.3:+56916215 | MS.gene88406:CDS |
| GATAATGTTATAGCTGGTAA+TGG | 0.511671 | 8.3:+56917177 | MS.gene88406:CDS |
| TTCCACGATCTTGACATGCC+TGG | 0.513082 | 8.3:+56915939 | MS.gene88406:CDS |
| GGACAGGGACCTCGTTTGCT+AGG | 0.522828 | 8.3:+56915224 | MS.gene88406:CDS |
| TTACTATAGTCAAGAATATG+TGG | 0.524731 | 8.3:-56916492 | None:intergenic |
| ATTCATCTCAAAGAATGGAC+AGG | 0.529382 | 8.3:+56915208 | MS.gene88406:CDS |
| AGAAGGTGAAATGTCAAGAA+AGG | 0.537124 | 8.3:+56915115 | MS.gene88406:CDS |
| CATCTCTTATGGGGCCTTTG+GGG | 0.546550 | 8.3:+56916963 | MS.gene88406:CDS |
| TTGCAGCCATCTCAGAGAAG+TGG | 0.546892 | 8.3:-56916452 | None:intergenic |
| CCGGTAACTCCTCAACGCAT+AGG | 0.547685 | 8.3:+56916214 | MS.gene88406:CDS |
| TGTATTGGATGCAAATGAGT+TGG | 0.548362 | 8.3:+56915031 | MS.gene88406:CDS |
| CTTGTTAGAATCTATGGTGA+AGG | 0.550047 | 8.3:+56915140 | MS.gene88406:CDS |
| TCTTATAGCCTCCAAAATGA+AGG | 0.550643 | 8.3:+56915914 | MS.gene88406:CDS |
| AGCAAACCACTTCTCTGAGA+TGG | 0.561547 | 8.3:+56916446 | MS.gene88406:CDS |
| ATAAAATGGCAAACAACAGA+AGG | 0.566959 | 8.3:+56915098 | MS.gene88406:CDS |
| TGCTGCACTTCATTATCACT+AGG | 0.567718 | 8.3:-56916903 | None:intergenic |
| TTGCTAGGAAGGTTTGCTCA+AGG | 0.570025 | 8.3:+56915239 | MS.gene88406:CDS |
| GGTTTCAAGATTATTGGTCA+AGG | 0.571213 | 8.3:+56917118 | MS.gene88406:CDS |
| GATGTTTCATTTGAACACAA+TGG | 0.571971 | 8.3:+56916159 | MS.gene88406:CDS |
| ACCAGCTATAACATTATCAT+GGG | 0.577959 | 8.3:-56917172 | None:intergenic |
| CTTGACTATAGTAAATATCC+CGG | 0.580938 | 8.3:+56916501 | MS.gene88406:CDS |
| AGGTACACATTCTTGGAACC+AGG | 0.595752 | 8.3:-56915957 | None:intergenic |
| GGAAGTTATTCCTCTTAAAG+GGG | 0.598650 | 8.3:+56915052 | MS.gene88406:CDS |
| GAAATTGGCTTATTGAAGCG+AGG | 0.601212 | 8.3:+56916110 | MS.gene88406:intron |
| TGAAGAGTTCATCCGCGCGA+AGG | 0.608159 | 8.3:+56915268 | MS.gene88406:CDS |
| TACCATATTGTAAATCATTG+TGG | 0.610437 | 8.3:-56916243 | None:intergenic |
| TGGCAAAACCCTATGCGTTG+AGG | 0.633836 | 8.3:-56916223 | None:intergenic |
| TTCATCTCAAAGAATGGACA+GGG | 0.638399 | 8.3:+56915209 | MS.gene88406:CDS |
| CTTGCAAGTCATCTCTTATG+GGG | 0.644065 | 8.3:+56916954 | MS.gene88406:CDS |
| AACCAGGCATGTCAAGATCG+TGG | 0.648278 | 8.3:-56915941 | None:intergenic |
| ACAAGGAGTATGCAAAACAA+AGG | 0.657049 | 8.3:+56917097 | MS.gene88406:CDS |
| TAAAGGGGCAATGACCAATG+AGG | 0.662217 | 8.3:+56915067 | MS.gene88406:CDS |
| CTACCGAAACGATTCCCCAA+AGG | 0.665779 | 8.3:-56916977 | None:intergenic |
| CATACCGTAATCTTTCCCAA+AGG | 0.702589 | 8.3:-56915977 | None:intergenic |
| GCAAACCTTCCTAGCAAACG+AGG | 0.716835 | 8.3:-56915233 | None:intergenic |
| AAGACAATACTACCTTCGCG+CGG | 0.749258 | 8.3:-56915280 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTGTTAATGTTAGATT+TGG | + | chr8.3:56915352-56915371 | MS.gene88406:intron | 15.0% |
| !! | ATTTCATTCTAAATTATGTT+TGG | - | chr8.3:56915464-56915483 | None:intergenic | 15.0% |
| !!! | AAAAAATGTACTTTTGTAAT+AGG | + | chr8.3:56916383-56916402 | MS.gene88406:intron | 15.0% |
| !!! | ACATAAAAGTAATTTTTGAA+TGG | - | chr8.3:56916570-56916589 | None:intergenic | 15.0% |
| !!! | ATAAAAGTAATTTTTGAATG+GGG | - | chr8.3:56916568-56916587 | None:intergenic | 15.0% |
| !!! | CATAAAAGTAATTTTTGAAT+GGG | - | chr8.3:56916569-56916588 | None:intergenic | 15.0% |
| !! | AAATAAATGGGAAAATGTAT+TGG | + | chr8.3:56915016-56915035 | MS.gene88406:CDS | 20.0% |
| !! | AACAATAAAATACTGATACA+TGG | + | chr8.3:56916780-56916799 | MS.gene88406:intron | 20.0% |
| !! | AACATTAACAATATTCTCAA+AGG | - | chr8.3:56915347-56915366 | None:intergenic | 20.0% |
| !! | AGTTAAAAGATTATGTTACA+TGG | + | chr8.3:56916676-56916695 | MS.gene88406:intron | 20.0% |
| !! | GAAATCATTAGCAAATAAAT+GGG | + | chr8.3:56915004-56915023 | MS.gene88406:CDS | 20.0% |
| !! | TCAATAACATCAAATTTGAT+AGG | - | chr8.3:56916086-56916105 | None:intergenic | 20.0% |
| !! | TGAAATCATTAGCAAATAAA+TGG | + | chr8.3:56915003-56915022 | MS.gene88406:CDS | 20.0% |
| !!! | ATCTATGCAAAGTTTTATTT+TGG | - | chr8.3:56915432-56915451 | None:intergenic | 20.0% |
| !!! | CAATAATTGTCATATTTTGA+AGG | - | chr8.3:56917261-56917280 | None:intergenic | 20.0% |
| ! | AACAAAGGTTTCAAGATTAT+TGG | + | chr8.3:56917112-56917131 | MS.gene88406:CDS | 25.0% |
| ! | AACATCAAATTTGATAGGAA+TGG | - | chr8.3:56916081-56916100 | None:intergenic | 25.0% |
| ! | AGTTCTTAATTAATGTCGTA+AGG | + | chr8.3:56915642-56915661 | MS.gene88406:intron | 25.0% |
| ! | TAAAGAGAAACTCACTATTA+TGG | - | chr8.3:56916302-56916321 | None:intergenic | 25.0% |
| ! | TACCATATTGTAAATCATTG+TGG | - | chr8.3:56916246-56916265 | None:intergenic | 25.0% |
| ! | TTACTATAGTCAAGAATATG+TGG | - | chr8.3:56916495-56916514 | None:intergenic | 25.0% |
| ! | TTCTAAATTATGTTTGGCAA+AGG | - | chr8.3:56915458-56915477 | None:intergenic | 25.0% |
| !! | AATATTTCTTTTGCTTCATC+TGG | - | chr8.3:56914984-56915003 | None:intergenic | 25.0% |
| !! | ATTATTGTTATTGTCAGACT+TGG | + | chr8.3:56915378-56915397 | MS.gene88406:intron | 25.0% |
| !! | TACTGACATTTTCTTTGATA+GGG | + | chr8.3:56915163-56915182 | MS.gene88406:CDS | 25.0% |
| !!! | CAAAATTGATTTTGACTACA+AGG | + | chr8.3:56917080-56917099 | MS.gene88406:CDS | 25.0% |
| !!! | GATGTTATTGATTCAGAAAT+TGG | + | chr8.3:56916095-56916114 | MS.gene88406:intron | 25.0% |
| !!! | TGGTTGATGAATTGAAATTT+AGG | + | chr8.3:56915398-56915417 | MS.gene88406:intron | 25.0% |
| !!! | TTCTCACTTTTTTTGATAAG+CGG | - | chr8.3:56916018-56916037 | None:intergenic | 25.0% |
| AAGGTTCTTGTTAGAATCTA+TGG | + | chr8.3:56915134-56915153 | MS.gene88406:CDS | 30.0% | |
| ACCAGCTATAACATTATCAT+GGG | - | chr8.3:56917175-56917194 | None:intergenic | 30.0% | |
| ATAAAATGGCAAACAACAGA+AGG | + | chr8.3:56915098-56915117 | MS.gene88406:CDS | 30.0% | |
| ATCTTCACAATACTTTGTTC+AGG | + | chr8.3:56917047-56917066 | MS.gene88406:intron | 30.0% | |
| ATGAAACATCTCAACTTCTT+CGG | - | chr8.3:56916149-56916168 | None:intergenic | 30.0% | |
| CTTGACTATAGTAAATATCC+CGG | + | chr8.3:56916501-56916520 | MS.gene88406:CDS | 30.0% | |
| GATAATGTTATAGCTGGTAA+TGG | + | chr8.3:56917177-56917196 | MS.gene88406:CDS | 30.0% | |
| GATGTTTCATTTGAACACAA+TGG | + | chr8.3:56916159-56916178 | MS.gene88406:CDS | 30.0% | |
| TACCAGCTATAACATTATCA+TGG | - | chr8.3:56917176-56917195 | None:intergenic | 30.0% | |
| TGCCACAATGATTTACAATA+TGG | + | chr8.3:56916241-56916260 | MS.gene88406:CDS | 30.0% | |
| TGGAAGTTATTCCTCTTAAA+GGG | + | chr8.3:56915051-56915070 | MS.gene88406:CDS | 30.0% | |
| TTGGAAGTTATTCCTCTTAA+AGG | + | chr8.3:56915050-56915069 | MS.gene88406:CDS | 30.0% | |
| TTGTTCTTATCATGAGTTGT+TGG | + | chr8.3:56916860-56916879 | MS.gene88406:intron | 30.0% | |
| ! | ATGAGGTATTCCAGATAAAA+TGG | + | chr8.3:56915084-56915103 | MS.gene88406:CDS | 30.0% |
| ! | TTTGCTATATCATATGCAAC+TGG | - | chr8.3:56916432-56916451 | None:intergenic | 30.0% |
| !! | AGAAATCTCTCTTTTGGAAA+AGG | + | chr8.3:56916186-56916205 | MS.gene88406:CDS | 30.0% |
| !! | ATTTTCACTTTTCAGCACAA+AGG | - | chr8.3:56916361-56916380 | None:intergenic | 30.0% |
| !! | GTACTGACATTTTCTTTGAT+AGG | + | chr8.3:56915162-56915181 | MS.gene88406:CDS | 30.0% |
| !! | TTTTATCTGGAATACCTCAT+TGG | - | chr8.3:56915084-56915103 | None:intergenic | 30.0% |
| !!! | TTTTAAGTTTCTTTTCCGCA+GGG | - | chr8.3:56915570-56915589 | None:intergenic | 30.0% |
| AATCATCATTTGAGCCCTAA+TGG | + | chr8.3:56917144-56917163 | MS.gene88406:CDS | 35.0% | |
| ACTTGCAAGTCATCTCTTAT+GGG | + | chr8.3:56916953-56916972 | MS.gene88406:CDS | 35.0% | |
| AGAAGGTGAAATGTCAAGAA+AGG | + | chr8.3:56915115-56915134 | MS.gene88406:CDS | 35.0% | |
| ATTCATCTCAAAGAATGGAC+AGG | + | chr8.3:56915208-56915227 | MS.gene88406:CDS | 35.0% | |
| CTTGTTAGAATCTATGGTGA+AGG | + | chr8.3:56915140-56915159 | MS.gene88406:CDS | 35.0% | |
| GCTATAAGAGCAGAAATAGA+TGG | - | chr8.3:56915903-56915922 | None:intergenic | 35.0% | |
| GGAAGTTATTCCTCTTAAAG+GGG | + | chr8.3:56915052-56915071 | MS.gene88406:CDS | 35.0% | |
| GGTTTCAAGATTATTGGTCA+AGG | + | chr8.3:56917118-56917137 | MS.gene88406:CDS | 35.0% | |
| GTAATGGTAAATAAGCGCAT+TGG | + | chr8.3:56917193-56917212 | MS.gene88406:intron | 35.0% | |
| GTCAAGAATATGTGGAGTTT+CGG | - | chr8.3:56916487-56916506 | None:intergenic | 35.0% | |
| TATCATGGGAAGATCCATTA+GGG | - | chr8.3:56917161-56917180 | None:intergenic | 35.0% | |
| TCTGCTTCTCTTGATAGATT+TGG | + | chr8.3:56916591-56916610 | MS.gene88406:intron | 35.0% | |
| TCTTATAGCCTCCAAAATGA+AGG | + | chr8.3:56915914-56915933 | MS.gene88406:CDS | 35.0% | |
| TGAAACATCTCAACTTCTTC+GGG | - | chr8.3:56916148-56916167 | None:intergenic | 35.0% | |
| TGTATTGGATGCAAATGAGT+TGG | + | chr8.3:56915031-56915050 | MS.gene88406:CDS | 35.0% | |
| TTATCATGGGAAGATCCATT+AGG | - | chr8.3:56917162-56917181 | None:intergenic | 35.0% | |
| TTCATCTCAAAGAATGGACA+GGG | + | chr8.3:56915209-56915228 | MS.gene88406:CDS | 35.0% | |
| TTCCAAGAATGTGTACCTTT+GGG | + | chr8.3:56915962-56915981 | MS.gene88406:CDS | 35.0% | |
| TTCGCATTCATCTCAAAGAA+TGG | + | chr8.3:56915203-56915222 | MS.gene88406:CDS | 35.0% | |
| ! | ACAAGGAGTATGCAAAACAA+AGG | + | chr8.3:56917097-56917116 | MS.gene88406:CDS | 35.0% |
| ! | ACTATTTGATAATTGCCCTG+CGG | + | chr8.3:56915552-56915571 | MS.gene88406:intron | 35.0% |
| ! | CAGACATATTTGAGTTCATC+AGG | + | chr8.3:56916634-56916653 | MS.gene88406:CDS | 35.0% |
| ! | GGACAAAGAAATCTCTCTTT+TGG | + | chr8.3:56916180-56916199 | MS.gene88406:CDS | 35.0% |
| ! | TCCCATGATAATGTTATAGC+TGG | + | chr8.3:56917171-56917190 | MS.gene88406:CDS | 35.0% |
| ! | TGAGAAGTTTTACTGCATAC+CGG | - | chr8.3:56916523-56916542 | None:intergenic | 35.0% |
| ! | TGTACCTTTGGGAAAGATTA+CGG | + | chr8.3:56915973-56915992 | MS.gene88406:CDS | 35.0% |
| !! | AAGTCTAAAACTGACTTGCA+GGG | + | chr8.3:56917293-56917312 | MS.gene88406:intron | 35.0% |
| !! | TAAGTCTAAAACTGACTTGC+AGG | + | chr8.3:56917292-56917311 | MS.gene88406:intron | 35.0% |
| !! | TCTTTTGGAAAAGGAATTGC+CGG | + | chr8.3:56916195-56916214 | MS.gene88406:CDS | 35.0% |
| !!! | CTGTTGTTTGCCATTTTATC+TGG | - | chr8.3:56915097-56915116 | None:intergenic | 35.0% |
| !!! | GTTTTAAGTTTCTTTTCCGC+AGG | - | chr8.3:56915571-56915590 | None:intergenic | 35.0% |
| !!! | TGCAAGTCAGTTTTAGACTT+AGG | - | chr8.3:56917293-56917312 | None:intergenic | 35.0% |
| AATAGATGGATCGCGCATAT+CGG | - | chr8.3:56915889-56915908 | None:intergenic | 40.0% | |
| CACTTGCAAGTCATCTCTTA+TGG | + | chr8.3:56916952-56916971 | MS.gene88406:CDS | 40.0% | |
| CATACCGTAATCTTTCCCAA+AGG | - | chr8.3:56915980-56915999 | None:intergenic | 40.0% | |
| CTTGCAAGTCATCTCTTATG+GGG | + | chr8.3:56916954-56916973 | MS.gene88406:CDS | 40.0% | |
| GCTTCTCTTGATAGATTTGG+AGG | + | chr8.3:56916594-56916613 | MS.gene88406:intron | 40.0% | |
| GTTCCAAGAATGTGTACCTT+TGG | + | chr8.3:56915961-56915980 | MS.gene88406:CDS | 40.0% | |
| TGCTGCACTTCATTATCACT+AGG | - | chr8.3:56916906-56916925 | None:intergenic | 40.0% | |
| ! | ATCGTGGAACTCCTTCATTT+TGG | - | chr8.3:56915928-56915947 | None:intergenic | 40.0% |
| ! | GAAATTGGCTTATTGAAGCG+AGG | + | chr8.3:56916110-56916129 | MS.gene88406:intron | 40.0% |
| ! | GAGAAGTTTTACTGCATACC+GGG | - | chr8.3:56916522-56916541 | None:intergenic | 40.0% |
| ! | TTCCCAAAGGTACACATTCT+TGG | - | chr8.3:56915967-56915986 | None:intergenic | 40.0% |
| !! | AGTCTAAAACTGACTTGCAG+GGG | + | chr8.3:56917294-56917313 | MS.gene88406:intron | 40.0% |
| !!! | GAGTTGTTGGTTTTGAACTC+AGG | + | chr8.3:56916873-56916892 | MS.gene88406:intron | 40.0% |
| AAGACAATACTACCTTCGCG+CGG | - | chr8.3:56915283-56915302 | None:intergenic | 45.0% | |
| AGGTACACATTCTTGGAACC+AGG | - | chr8.3:56915960-56915979 | None:intergenic | 45.0% | |
| ATAGATGGATCGCGCATATC+GGG | - | chr8.3:56915888-56915907 | None:intergenic | 45.0% | |
| TAAAGGGGCAATGACCAATG+AGG | + | chr8.3:56915067-56915086 | MS.gene88406:CDS | 45.0% | |
| TCATCTCTTATGGGGCCTTT+GGG | + | chr8.3:56916962-56916981 | MS.gene88406:CDS | 45.0% | |
| TTGGTCATTGCCCCTTTAAG+AGG | - | chr8.3:56915065-56915084 | None:intergenic | 45.0% | |
| ! | AGCAAACCACTTCTCTGAGA+TGG | + | chr8.3:56916446-56916465 | MS.gene88406:CDS | 45.0% |
| ! | GTGGAACTCCTTCATTTTGG+AGG | - | chr8.3:56915925-56915944 | None:intergenic | 45.0% |
| ! | TTGCTAGGAAGGTTTGCTCA+AGG | + | chr8.3:56915239-56915258 | MS.gene88406:CDS | 45.0% |
| !!! | TATTAAAATTTTATTTTGAA+AGG | + | chr8.3:56915683-56915702 | MS.gene88406:intron | 5.0% |
| !!! | TTTCAAAATAAAATTTTAAT+AGG | - | chr8.3:56915684-56915703 | None:intergenic | 5.0% |
| AACCAGGCATGTCAAGATCG+TGG | - | chr8.3:56915944-56915963 | None:intergenic | 50.0% | |
| CATCTCTTATGGGGCCTTTG+GGG | + | chr8.3:56916963-56916982 | MS.gene88406:CDS | 50.0% | |
| CCTATGCGTTGAGGAGTTAC+CGG | - | chr8.3:56916217-56916236 | None:intergenic | 50.0% | |
| CGGTAACTCCTCAACGCATA+GGG | + | chr8.3:56916215-56916234 | MS.gene88406:CDS | 50.0% | |
| CTACCGAAACGATTCCCCAA+AGG | - | chr8.3:56916980-56916999 | None:intergenic | 50.0% | |
| GCAAACCTTCCTAGCAAACG+AGG | - | chr8.3:56915236-56915255 | None:intergenic | 50.0% | |
| GTCATCTCTTATGGGGCCTT+TGG | + | chr8.3:56916961-56916980 | MS.gene88406:CDS | 50.0% | |
| TGGCAAAACCCTATGCGTTG+AGG | - | chr8.3:56916226-56916245 | None:intergenic | 50.0% | |
| TTCCACGATCTTGACATGCC+TGG | + | chr8.3:56915939-56915958 | MS.gene88406:CDS | 50.0% | |
| TTGCAGCCATCTCAGAGAAG+TGG | - | chr8.3:56916455-56916474 | None:intergenic | 50.0% | |
| ! | CTTTGGGGAATCGTTTCGGT+AGG | + | chr8.3:56916978-56916997 | MS.gene88406:intron | 50.0% |
| !! | CTAAAACTGACTTGCAGGGG+AGG | + | chr8.3:56917297-56917316 | MS.gene88406:intron | 50.0% |
| CCGGTAACTCCTCAACGCAT+AGG | + | chr8.3:56916214-56916233 | MS.gene88406:CDS | 55.0% | |
| TCGCGCGGATGAACTCTTCA+AGG | - | chr8.3:56915268-56915287 | None:intergenic | 55.0% | |
| TGAAGAGTTCATCCGCGCGA+AGG | + | chr8.3:56915268-56915287 | MS.gene88406:CDS | 55.0% | |
| ! | AGGGACCTCGTTTGCTAGGA+AGG | + | chr8.3:56915228-56915247 | MS.gene88406:CDS | 55.0% |
| ! | GGGCCTTTGGGGAATCGTTT+CGG | + | chr8.3:56916974-56916993 | MS.gene88406:CDS | 55.0% |
| GGACAGGGACCTCGTTTGCT+AGG | + | chr8.3:56915224-56915243 | MS.gene88406:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 56914879 | 56917339 | 56914879 | ID=MS.gene88406 |
| chr8.3 | mRNA | 56914879 | 56917339 | 56914879 | ID=MS.gene88406.t1;Parent=MS.gene88406 |
| chr8.3 | exon | 56914879 | 56915289 | 56914879 | ID=MS.gene88406.t1.exon1;Parent=MS.gene88406.t1 |
| chr8.3 | CDS | 56914879 | 56915289 | 56914879 | ID=cds.MS.gene88406.t1;Parent=MS.gene88406.t1 |
| chr8.3 | exon | 56915873 | 56915994 | 56915873 | ID=MS.gene88406.t1.exon2;Parent=MS.gene88406.t1 |
| chr8.3 | CDS | 56915873 | 56915994 | 56915873 | ID=cds.MS.gene88406.t1;Parent=MS.gene88406.t1 |
| chr8.3 | exon | 56916111 | 56916306 | 56916111 | ID=MS.gene88406.t1.exon3;Parent=MS.gene88406.t1 |
| chr8.3 | CDS | 56916111 | 56916306 | 56916111 | ID=cds.MS.gene88406.t1;Parent=MS.gene88406.t1 |
| chr8.3 | exon | 56916405 | 56916522 | 56916405 | ID=MS.gene88406.t1.exon4;Parent=MS.gene88406.t1 |
| chr8.3 | CDS | 56916405 | 56916522 | 56916405 | ID=cds.MS.gene88406.t1;Parent=MS.gene88406.t1 |
| chr8.3 | exon | 56916608 | 56916655 | 56916608 | ID=MS.gene88406.t1.exon5;Parent=MS.gene88406.t1 |
| chr8.3 | CDS | 56916608 | 56916655 | 56916608 | ID=cds.MS.gene88406.t1;Parent=MS.gene88406.t1 |
| chr8.3 | exon | 56916895 | 56916995 | 56916895 | ID=MS.gene88406.t1.exon6;Parent=MS.gene88406.t1 |
| chr8.3 | CDS | 56916895 | 56916995 | 56916895 | ID=cds.MS.gene88406.t1;Parent=MS.gene88406.t1 |
| chr8.3 | exon | 56917069 | 56917198 | 56917069 | ID=MS.gene88406.t1.exon7;Parent=MS.gene88406.t1 |
| chr8.3 | CDS | 56917069 | 56917198 | 56917069 | ID=cds.MS.gene88406.t1;Parent=MS.gene88406.t1 |
| chr8.3 | exon | 56917314 | 56917339 | 56917314 | ID=MS.gene88406.t1.exon8;Parent=MS.gene88406.t1 |
| chr8.3 | CDS | 56917314 | 56917339 | 56917314 | ID=cds.MS.gene88406.t1;Parent=MS.gene88406.t1 |
| Gene Sequence |
| Protein sequence |
