Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88766.t1 | XP_013467478.1 | 75.4 | 1204 | 283 | 2 | 1 | 1191 | 1 | 1204 | 0.00E+00 | 1538.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88766.t1 | Q56YN8 | 60.5 | 1203 | 461 | 2 | 1 | 1189 | 1 | 1203 | 0.0e+00 | 1260.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88766.t1 | A0A072VIT6 | 75.4 | 1204 | 283 | 2 | 1 | 1191 | 25 | 1228 | 0.0e+00 | 1538.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene88766 | MS.gene45748 | PPI |
| MS.gene88766 | MS.gene033508 | PPI |
| MS.gene88766 | MS.gene058789 | PPI |
| MS.gene88766 | MS.gene95250 | PPI |
| MS.gene88766 | MS.gene036083 | PPI |
| MS.gene88766 | MS.gene024068 | PPI |
| MS.gene88766 | MS.gene056169 | PPI |
| MS.gene88766 | MS.gene016667 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88766.t1 | MTR_1g051825 | 82.558 | 1204 | 197 | 2 | 1 | 1191 | 1 | 1204 | 0.0 | 1962 |
| MS.gene88766.t1 | MTR_1g051825 | 82.558 | 1204 | 197 | 2 | 1 | 1191 | 25 | 1228 | 0.0 | 1959 |
| MS.gene88766.t1 | MTR_3g110058 | 60.862 | 580 | 171 | 6 | 122 | 698 | 1 | 527 | 0.0 | 625 |
| MS.gene88766.t1 | MTR_3g110055 | 67.108 | 453 | 131 | 4 | 696 | 1130 | 2 | 454 | 0.0 | 551 |
| MS.gene88766.t1 | MTR_5g086975 | 52.030 | 271 | 56 | 5 | 233 | 503 | 50 | 246 | 2.27e-62 | 215 |
| MS.gene88766.t1 | MTR_8g037325 | 24.507 | 1269 | 734 | 41 | 1 | 1159 | 1 | 1155 | 5.14e-60 | 226 |
| MS.gene88766.t1 | MTR_8g072890 | 22.070 | 1314 | 792 | 44 | 1 | 1182 | 14 | 1227 | 1.68e-41 | 167 |
| MS.gene88766.t1 | MTR_5g087290 | 76.623 | 77 | 18 | 0 | 427 | 503 | 1 | 77 | 5.72e-30 | 115 |
| MS.gene88766.t1 | MTR_1g069910 | 23.695 | 709 | 376 | 31 | 523 | 1135 | 518 | 1157 | 5.86e-18 | 90.5 |
| MS.gene88766.t1 | MTR_7g091420 | 24.479 | 384 | 241 | 8 | 1 | 360 | 9 | 367 | 2.33e-15 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88766.t1 | AT2G27170 | 63.704 | 1204 | 423 | 2 | 1 | 1190 | 1 | 1204 | 0.0 | 1493 |
| MS.gene88766.t1 | AT2G27170 | 63.704 | 1204 | 423 | 2 | 1 | 1190 | 1 | 1204 | 0.0 | 1493 |
| MS.gene88766.t1 | AT2G27170 | 61.905 | 1050 | 393 | 1 | 1 | 1043 | 1 | 1050 | 0.0 | 1269 |
| MS.gene88766.t1 | AT2G27170 | 61.905 | 1050 | 393 | 1 | 1 | 1043 | 1 | 1050 | 0.0 | 1269 |
| MS.gene88766.t1 | AT5G62410 | 24.655 | 1233 | 777 | 44 | 1 | 1159 | 1 | 1155 | 1.87e-57 | 218 |
| MS.gene88766.t1 | AT3G47460 | 31.674 | 221 | 143 | 5 | 1 | 215 | 1 | 219 | 6.23e-28 | 123 |
| MS.gene88766.t1 | AT3G47460 | 31.674 | 221 | 143 | 5 | 1 | 215 | 1 | 219 | 7.03e-28 | 122 |
| MS.gene88766.t1 | AT3G54670 | 22.767 | 694 | 402 | 22 | 523 | 1135 | 519 | 1159 | 2.03e-17 | 89.0 |
| MS.gene88766.t1 | AT5G48600 | 23.182 | 220 | 130 | 5 | 948 | 1161 | 1033 | 1219 | 5.62e-12 | 71.2 |
| MS.gene88766.t1 | AT5G48600 | 23.182 | 220 | 130 | 5 | 948 | 1161 | 1030 | 1216 | 5.81e-12 | 70.9 |
Find 197 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAAATCTCAAAACATTTC+TGG | 0.160443 | 5.4:+54957377 | MS.gene88766:CDS |
| CCTTGTTGTACAACATAATA+TGG | 0.190231 | 5.4:-54951863 | None:intergenic |
| TTGAACTTCTTTGTTATATA+TGG | 0.195435 | 5.4:-54952641 | None:intergenic |
| AGTCAAAGAGTCAGGAATTT+AGG | 0.204119 | 5.4:+54961036 | MS.gene88766:CDS |
| CAAATTATTCTCCAGATCTT+TGG | 0.251481 | 5.4:-54954106 | None:intergenic |
| AAGAGTATACCAAGAAAATA+AGG | 0.255492 | 5.4:+54961422 | MS.gene88766:CDS |
| CCGGACAATTTGTTCGAAAA+AGG | 0.266191 | 5.4:+54951620 | MS.gene88766:CDS |
| ACAAGTGCTTTAGAAAATAA+TGG | 0.275883 | 5.4:-54960500 | None:intergenic |
| TGTTATATTATAGGTCCTTA+TGG | 0.278779 | 5.4:+54956347 | MS.gene88766:intron |
| TTACCAACACAGTTAACTTT+AGG | 0.286165 | 5.4:-54949884 | None:intergenic |
| TAAGCTGTTCAATCTGATTC+TGG | 0.295580 | 5.4:-54960668 | None:intergenic |
| ACTGTCAGCATTCTGCTTAA+TGG | 0.299928 | 5.4:-54959295 | None:intergenic |
| CAGATAGACCAAAAGGTTAA+TGG | 0.302621 | 5.4:+54960377 | MS.gene88766:intron |
| ACCTCCCGACAACTGCTTCA+TGG | 0.303146 | 5.4:-54964699 | None:intergenic |
| TTGGATTTACTGAAGGAAAT+AGG | 0.309154 | 5.4:+54952031 | MS.gene88766:CDS |
| AGAAATTGAAGGCCTTAAAA+AGG | 0.314098 | 5.4:+54960785 | MS.gene88766:CDS |
| TCAAAGATGAAATTAATAAA+TGG | 0.315740 | 5.4:+54961232 | MS.gene88766:CDS |
| CAGGTTAGCAACTCAATAAT+TGG | 0.323752 | 5.4:-54957410 | None:intergenic |
| AACAGTTATCTGCGAGAATC+TGG | 0.327910 | 5.4:+54959056 | MS.gene88766:CDS |
| CAAAACATTTCTGGAGTTCA+TGG | 0.331205 | 5.4:+54957386 | MS.gene88766:CDS |
| AATCATCTTAACCGACAAAA+AGG | 0.344747 | 5.4:+54957752 | MS.gene88766:CDS |
| TCCACAAATGCAGATAAAAC+TGG | 0.346018 | 5.4:-54950738 | None:intergenic |
| CAGACACAAAATGCTGATTA+AGG | 0.350936 | 5.4:+54965799 | MS.gene88766:CDS |
| TGATGAGATTGATGCTGCTT+TGG | 0.351240 | 5.4:+54964793 | MS.gene88766:CDS |
| AACTGAAGTGATGAATTTAC+TGG | 0.352491 | 5.4:+54951814 | MS.gene88766:CDS |
| CAGAGGCTTTCATCAAGGTT+AGG | 0.353698 | 5.4:-54952003 | None:intergenic |
| AAAGGTGTTGCTATGCATTT+CGG | 0.353997 | 5.4:+54962424 | MS.gene88766:CDS |
| TTTCAACATGTTCATTAAAC+AGG | 0.356991 | 5.4:+54949606 | None:intergenic |
| AAAAGAATCAATGGATGAAC+TGG | 0.368126 | 5.4:+54954411 | MS.gene88766:CDS |
| TACCAAGAAAATAAGGGAAC+TGG | 0.370065 | 5.4:+54961429 | MS.gene88766:CDS |
| CGAGTATAATAGAAAACTTC+AGG | 0.372965 | 5.4:+54961339 | MS.gene88766:CDS |
| AAAGTTGCCGACAAGATATA+TGG | 0.389830 | 5.4:+54965700 | MS.gene88766:CDS |
| TTCTAAAGCACTTGTAAAGA+AGG | 0.389908 | 5.4:+54960508 | MS.gene88766:CDS |
| TAGAACAAAGATTAATACTT+TGG | 0.393318 | 5.4:+54956166 | MS.gene88766:CDS |
| TCAGGAAGAAGCTAAAGAAT+TGG | 0.400137 | 5.4:+54961357 | MS.gene88766:CDS |
| TGCTCTAGAATTCATTAATC+AGG | 0.401763 | 5.4:+54965774 | MS.gene88766:CDS |
| GTCAAAGAGTCAGGAATTTA+GGG | 0.410575 | 5.4:+54961037 | MS.gene88766:CDS |
| TTCTTTCTCCCTGCTCCATA+AGG | 0.418106 | 5.4:-54956362 | None:intergenic |
| TAAAGAATTGGAGCAATTGC+TGG | 0.419077 | 5.4:+54961369 | MS.gene88766:CDS |
| AGTCTCAATGATACAATTCC+TGG | 0.423849 | 5.4:+54956436 | MS.gene88766:CDS |
| AATATTCTCTGAACTTGTAC+AGG | 0.426667 | 5.4:+54962450 | MS.gene88766:CDS |
| CCCTTTGGCTTTGCTTCCCG+AGG | 0.427101 | 5.4:-54963997 | None:intergenic |
| AAAGTATAATTGATCGAAAC+GGG | 0.429552 | 5.4:+54961196 | MS.gene88766:CDS |
| TATAGATATGATCCGGCGCC+GGG | 0.432374 | 5.4:+54965624 | MS.gene88766:intron |
| GGAGATTGTTGATCTTGAAC+AGG | 0.433134 | 5.4:+54954853 | MS.gene88766:CDS |
| GAATCAGATTGAACAGCTTA+AGG | 0.440247 | 5.4:+54960671 | MS.gene88766:CDS |
| TGAACCAGACCATCATATAT+AGG | 0.445765 | 5.4:-54954445 | None:intergenic |
| AAGTATTAATCTTTGTTCTA+CGG | 0.445807 | 5.4:-54956163 | None:intergenic |
| TTGAAGTTACTGCAGGAAAC+AGG | 0.450106 | 5.4:+54957456 | MS.gene88766:CDS |
| ATTATAGGTCCTTATGGAGC+AGG | 0.451630 | 5.4:+54956353 | MS.gene88766:intron |
| AAAAGTATAATTGATCGAAA+CGG | 0.453681 | 5.4:+54961195 | MS.gene88766:CDS |
| AGAAGGAAAGAAAGCGGGGC+TGG | 0.453734 | 5.4:+54960920 | MS.gene88766:CDS |
| TCGGCAACTTTCACTAGCTC+TGG | 0.455767 | 5.4:-54965688 | None:intergenic |
| CTACACTCCAGCTTTCAATC+AGG | 0.456099 | 5.4:+54957883 | MS.gene88766:CDS |
| AGGTGGTACTAGAGTTTATG+AGG | 0.456658 | 5.4:+54952051 | MS.gene88766:CDS |
| TCAAAAGCATCTGATGTCAA+TGG | 0.456925 | 5.4:-54961454 | None:intergenic |
| CAGTCCTATATATGATGGTC+TGG | 0.457209 | 5.4:+54954441 | MS.gene88766:CDS |
| CGCTGTATCACATCTCTGTA+TGG | 0.459501 | 5.4:-54964756 | None:intergenic |
| GGTAGCTCGTACCAATGGTT+TGG | 0.459742 | 5.4:+54959092 | MS.gene88766:CDS |
| GAGAAAATAATGAAAGATAC+AGG | 0.463056 | 5.4:+54952091 | MS.gene88766:CDS |
| AGAGTATACCAAGAAAATAA+GGG | 0.463899 | 5.4:+54961423 | MS.gene88766:CDS |
| GAAAGAAATAAAAGAATCAA+TGG | 0.466966 | 5.4:+54954402 | MS.gene88766:CDS |
| GCAGTTGGTGCTAATGGATC+TGG | 0.467644 | 5.4:+54950373 | MS.gene88766:intron |
| CTTCTAAATACTGTACAACT+TGG | 0.471180 | 5.4:-54952534 | None:intergenic |
| ATTTAGGGATGCTAAAGGAT+TGG | 0.471323 | 5.4:+54961052 | MS.gene88766:CDS |
| GAACTTGTACAGGGCGGCTA+TGG | 0.472971 | 5.4:+54962460 | MS.gene88766:CDS |
| TAATACTTTGGAATTTCAAA+CGG | 0.473321 | 5.4:+54956178 | MS.gene88766:CDS |
| AGAGGCTTTCATCAAGGTTA+GGG | 0.474689 | 5.4:-54952002 | None:intergenic |
| TTCTCTTCACAGGAAGGGGC+TGG | 0.475306 | 5.4:+54950711 | MS.gene88766:intron |
| ATTCAACCCTTCACGTGACT+TGG | 0.477319 | 5.4:-54956201 | None:intergenic |
| TTGCTATGTCTGCCCGGCGC+CGG | 0.478684 | 5.4:-54965636 | None:intergenic |
| ACAGGGCGGCTATGGTCATC+TGG | 0.479869 | 5.4:+54962468 | MS.gene88766:CDS |
| GATGAAAGCCTCTGAGCGAT+TGG | 0.480648 | 5.4:+54952012 | MS.gene88766:CDS |
| AAATTCAATTTCTTTAAAAG+AGG | 0.482439 | 5.4:-54957851 | None:intergenic |
| AGTCCTAAAGTTAACTGTGT+TGG | 0.484406 | 5.4:+54949881 | MS.gene88766:CDS |
| CAGTCCATGAAGCAGTTGTC+GGG | 0.486486 | 5.4:+54964695 | MS.gene88766:CDS |
| TGACAAGCAGAGAAAATCCT+TGG | 0.487457 | 5.4:+54952612 | MS.gene88766:CDS |
| GGAGCATTTACTCTGTTAAG+TGG | 0.489316 | 5.4:-54957794 | None:intergenic |
| TGTCACTCCATATATCTTGT+CGG | 0.495905 | 5.4:-54965707 | None:intergenic |
| ACATGAGAAATCCAAAGATC+TGG | 0.499595 | 5.4:+54954095 | MS.gene88766:CDS |
| GTTATATATGGCATATTCCA+AGG | 0.501813 | 5.4:-54952629 | None:intergenic |
| CAAAAGCATCTGATGTCAAT+GGG | 0.501917 | 5.4:-54961453 | None:intergenic |
| TTCTAACTATAGATATGATC+CGG | 0.503272 | 5.4:+54965617 | MS.gene88766:intron |
| TGATGCCGAGTCAAAGAGTC+AGG | 0.503666 | 5.4:+54961028 | MS.gene88766:CDS |
| TGTTGATACTTCAGAAACCT+TGG | 0.504387 | 5.4:-54954046 | None:intergenic |
| CAGGAGAAGAAAACAAGAGC+TGG | 0.505253 | 5.4:+54960965 | MS.gene88766:CDS |
| TCGTGATCAGTGGCTTCAAA+AGG | 0.510625 | 5.4:+54954832 | MS.gene88766:CDS |
| TCGCTCAGAGGCTTTCATCA+AGG | 0.512814 | 5.4:-54952008 | None:intergenic |
| CAGGAATTTAGGGATGCTAA+AGG | 0.517381 | 5.4:+54961047 | MS.gene88766:CDS |
| CTAATCTAACCACTAATCTC+AGG | 0.517505 | 5.4:+54960946 | MS.gene88766:CDS |
| AAAATCAGTCCTATATATGA+TGG | 0.518190 | 5.4:+54954436 | MS.gene88766:CDS |
| TCACATCAAAGAGGAGGACT+TGG | 0.518359 | 5.4:+54959320 | MS.gene88766:CDS |
| GAAGAGGGTTGAATACAGTT+CGG | 0.518730 | 5.4:+54957348 | MS.gene88766:CDS |
| GGAACTAGATGAGGAGAAAG+AGG | 0.520899 | 5.4:+54952567 | MS.gene88766:CDS |
| GACTGGAACCAAGAAATTGA+AGG | 0.524170 | 5.4:+54960774 | MS.gene88766:CDS |
| GGTCTCACAGATAGACCAAA+AGG | 0.525758 | 5.4:+54960370 | MS.gene88766:intron |
| ATGAATTTACTGGAAAGTGC+TGG | 0.527499 | 5.4:+54951824 | MS.gene88766:CDS |
| CTATAGATATGATCCGGCGC+CGG | 0.528979 | 5.4:+54965623 | MS.gene88766:intron |
| AAGCTAACCTGATTGAAAGC+TGG | 0.529389 | 5.4:-54957890 | None:intergenic |
| TTGCAAGAATGATCGTATTG+AGG | 0.530772 | 5.4:+54960818 | MS.gene88766:CDS |
| GAATCTGGATGTGGCTTCAA+AGG | 0.530946 | 5.4:+54959071 | MS.gene88766:CDS |
| ACTGCAGTTGAAGTTACTGC+AGG | 0.531496 | 5.4:+54957449 | MS.gene88766:CDS |
| TCAATAGAACGCACTTTCAA+AGG | 0.535025 | 5.4:+54962406 | MS.gene88766:CDS |
| AGAACTTACGCAGTGAGGAT+AGG | 0.537005 | 5.4:+54950577 | MS.gene88766:CDS |
| TCAATTTCTTTAAAAGAGGT+AGG | 0.537527 | 5.4:-54957847 | None:intergenic |
| CAGAAAGAAGGAAAGAAAGC+GGG | 0.540155 | 5.4:+54960915 | MS.gene88766:intron |
| TTTATGATCACAGACGATCA+AGG | 0.543698 | 5.4:+54959256 | MS.gene88766:CDS |
| TGAACTTGATGCAGGAAAAG+AGG | 0.544149 | 5.4:+54961912 | MS.gene88766:CDS |
| AGATATCACATTAACACGGC+TGG | 0.547116 | 5.4:-54965743 | None:intergenic |
| ACAGTCCATGAAGCAGTTGT+CGG | 0.548490 | 5.4:+54964694 | MS.gene88766:CDS |
| CAGAGATAGAAGAGCTTAAG+CGG | 0.550591 | 5.4:+54960450 | MS.gene88766:CDS |
| ATCAAGACAAGGATAGCCCT+CGG | 0.552296 | 5.4:+54963980 | MS.gene88766:CDS |
| CCATATTATGTTGTACAACA+AGG | 0.554517 | 5.4:+54951863 | MS.gene88766:CDS |
| AGACAAGCTGAACTTGATGC+AGG | 0.558384 | 5.4:+54961904 | MS.gene88766:CDS |
| TGAGCGATTGGATTTACTGA+AGG | 0.561514 | 5.4:+54952024 | MS.gene88766:CDS |
| CCACAAATGCAGATAAAACT+GGG | 0.565032 | 5.4:-54950737 | None:intergenic |
| ATCAACAAAGAAGTATAATG+AGG | 0.570587 | 5.4:+54954062 | MS.gene88766:CDS |
| GCTCTCTTCAAACACGGCAC+AGG | 0.572042 | 5.4:+54954877 | MS.gene88766:CDS |
| ACTGAGAGCAGAAGTTGAGA+AGG | 0.575102 | 5.4:+54956405 | MS.gene88766:CDS |
| TCAAAGGTAGCTCGTACCAA+TGG | 0.575939 | 5.4:+54959087 | MS.gene88766:CDS |
| TTCTAAATACTGTACAACTT+GGG | 0.576033 | 5.4:-54952533 | None:intergenic |
| CAAACGGCCAAGTCACGTGA+AGG | 0.576112 | 5.4:+54956194 | MS.gene88766:CDS |
| CCTCCGTGGCAATTTGCTCT+CGG | 0.576502 | 5.4:-54949853 | None:intergenic |
| CCTCGGGAAGCAAAGCCAAA+GGG | 0.577969 | 5.4:+54963997 | MS.gene88766:CDS |
| TTGGACTGCATAACACTGGA+AGG | 0.580092 | 5.4:+54959111 | MS.gene88766:CDS |
| GAGTGTTTGCTATGTCTGCC+CGG | 0.581179 | 5.4:-54965642 | None:intergenic |
| TTGTACAGTATTTAGAAGAG+AGG | 0.585238 | 5.4:+54952539 | MS.gene88766:CDS |
| TCTGTGATCATAAAATCCTC+CGG | 0.586231 | 5.4:-54959247 | None:intergenic |
| GGGAGAGTAGAAAACTACAT+TGG | 0.588863 | 5.4:+54964018 | MS.gene88766:CDS |
| TGTTATGCAGTCCAAACCAT+TGG | 0.589083 | 5.4:-54959103 | None:intergenic |
| ACCAAGAAAATAAGGGAACT+GGG | 0.589324 | 5.4:+54961430 | MS.gene88766:CDS |
| CCCTCGGGAAGCAAAGCCAA+AGG | 0.589705 | 5.4:+54963996 | MS.gene88766:CDS |
| CCTTTGGCTTTGCTTCCCGA+GGG | 0.589978 | 5.4:-54963996 | None:intergenic |
| TAATTTGAAAGATATAATGA+AGG | 0.590282 | 5.4:+54954122 | MS.gene88766:CDS |
| TATTTGGCTGCAGTCTCTGG+AGG | 0.594949 | 5.4:+54961315 | MS.gene88766:intron |
| AGTATTCTCTATCAAAAGCA+AGG | 0.597708 | 5.4:+54954779 | MS.gene88766:CDS |
| GCTGATGATGACTCTTTGCA+TGG | 0.599425 | 5.4:+54961005 | MS.gene88766:CDS |
| TCATCTGGATATGATGAAGA+AGG | 0.600551 | 5.4:+54962483 | MS.gene88766:CDS |
| TATCTGCGAGAATCTGGATG+TGG | 0.602318 | 5.4:+54959062 | MS.gene88766:CDS |
| TGAATTTACTGGAAAGTGCT+GGG | 0.602515 | 5.4:+54951825 | MS.gene88766:CDS |
| ATATGCAGGATGTTAGAAGA+GGG | 0.603171 | 5.4:+54957333 | MS.gene88766:intron |
| GAAACGGTCTTCTTGATGAG+AGG | 0.605497 | 5.4:+54956240 | MS.gene88766:CDS |
| AGAGATAGAAGAGCTTAAGC+GGG | 0.605946 | 5.4:+54960451 | MS.gene88766:CDS |
| TTATGTTGTACAACAAGGAA+AGG | 0.607085 | 5.4:+54951868 | MS.gene88766:CDS |
| TGAAATGCGTGGCTGTGATA+CGG | 0.607154 | 5.4:+54956130 | MS.gene88766:CDS |
| TTATAGGTCCTTATGGAGCA+GGG | 0.607493 | 5.4:+54956354 | MS.gene88766:intron |
| GTAAAGCTGCTCGTGATCAG+TGG | 0.610771 | 5.4:+54954822 | MS.gene88766:CDS |
| TCAAGACAAGGATAGCCCTC+GGG | 0.615040 | 5.4:+54963981 | MS.gene88766:CDS |
| AGATGAAATTAATAAATGGA+AGG | 0.616624 | 5.4:+54961236 | MS.gene88766:CDS |
| GTATGGCAAAGATAAGTGCA+AGG | 0.617710 | 5.4:-54964739 | None:intergenic |
| GAGGCTGAAGGAACTAGATG+AGG | 0.617909 | 5.4:+54952558 | MS.gene88766:CDS |
| TGCTCAGCTAAAGCTTGCAG+AGG | 0.618147 | 5.4:+54952666 | MS.gene88766:CDS |
| ATCACTCAACACGAAACGAA+TGG | 0.624342 | 5.4:-54950547 | None:intergenic |
| TAATTCAGACAATCGTATCC+CGG | 0.625351 | 5.4:+54950773 | MS.gene88766:CDS |
| TGGTTTGGACTGCATAACAC+TGG | 0.626774 | 5.4:+54959107 | MS.gene88766:CDS |
| AACAGTGCTAGATCAACAGA+AGG | 0.627814 | 5.4:+54962378 | MS.gene88766:CDS |
| CCACAGTACAGAACTGCCGT+TGG | 0.630949 | 5.4:+54964818 | MS.gene88766:CDS |
| AAATTCCTGACTCTTTGACT+CGG | 0.631535 | 5.4:-54961033 | None:intergenic |
| AAACGGCCAAGTCACGTGAA+GGG | 0.631549 | 5.4:+54956195 | MS.gene88766:CDS |
| CATTGACCATTTAACGCCAG+AGG | 0.631987 | 5.4:+54960734 | MS.gene88766:CDS |
| GTACTAGAGTTTATGAGGAG+AGG | 0.632212 | 5.4:+54952056 | MS.gene88766:CDS |
| CTCTGTGGATAAGTGATGCG+TGG | 0.632709 | 5.4:-54957815 | None:intergenic |
| CTCGGGAAGCAAAGCCAAAG+GGG | 0.634172 | 5.4:+54963998 | MS.gene88766:CDS |
| GAGAAGAAAACAAGAGCTGG+AGG | 0.634923 | 5.4:+54960968 | MS.gene88766:CDS |
| CAGTAAATCCAATCGCTCAG+AGG | 0.636170 | 5.4:-54952020 | None:intergenic |
| TAGAATCATGAAGCACGAGA+AGG | 0.636405 | 5.4:+54954751 | MS.gene88766:intron |
| TTGCTTAATGTTGAAATGCG+TGG | 0.638129 | 5.4:+54956119 | MS.gene88766:CDS |
| AATATGCAGGATGTTAGAAG+AGG | 0.640786 | 5.4:+54957332 | MS.gene88766:intron |
| CAACTTTCACTAGCTCTGGA+CGG | 0.648302 | 5.4:-54965684 | None:intergenic |
| CTGTGAATAGGTTGACAAGG+AGG | 0.648630 | 5.4:+54951584 | MS.gene88766:intron |
| CTTTCAGAACTTACGCAGTG+AGG | 0.651455 | 5.4:+54950572 | MS.gene88766:CDS |
| TCCATGAAGCAGTTGTCGGG+AGG | 0.652613 | 5.4:+54964698 | MS.gene88766:CDS |
| GTATTTAGAAGAGAGGCTGA+AGG | 0.652631 | 5.4:+54952546 | MS.gene88766:CDS |
| AGGAGGAAGTGCACTTACGC+CGG | 0.654057 | 5.4:+54951601 | MS.gene88766:CDS |
| CTACATTGGAGTGAAAGTGA+AGG | 0.657266 | 5.4:+54964032 | MS.gene88766:CDS |
| TATGGCAAAGATAAGTGCAA+GGG | 0.657792 | 5.4:-54964738 | None:intergenic |
| ATATTCTCTGAACTTGTACA+GGG | 0.659628 | 5.4:+54962451 | MS.gene88766:CDS |
| GCAGAAAGAAGGAAAGAAAG+CGG | 0.659893 | 5.4:+54960914 | MS.gene88766:intron |
| TCTCAGTTTATCAATTTCAG+CGG | 0.660174 | 5.4:-54956389 | None:intergenic |
| GATCATTCTTGCAAGCAACA+AGG | 0.666516 | 5.4:-54960809 | None:intergenic |
| TTACCGAGAGCAAATTGCCA+CGG | 0.669011 | 5.4:+54949850 | MS.gene88766:CDS |
| CAGTATTCACATCAAAGAGG+AGG | 0.672571 | 5.4:+54959314 | MS.gene88766:CDS |
| GGTTGTTGAAAATGATGACA+AGG | 0.678450 | 5.4:+54957715 | MS.gene88766:CDS |
| CCGAGAGCAAATTGCCACGG+AGG | 0.678977 | 5.4:+54949853 | MS.gene88766:CDS |
| CCAACGGCAGTTCTGTACTG+TGG | 0.684386 | 5.4:-54964818 | None:intergenic |
| ACAGGTGCTCTCTTCAAACA+CGG | 0.686036 | 5.4:+54954871 | MS.gene88766:CDS |
| GATTTACTGAAGGAAATAGG+TGG | 0.687534 | 5.4:+54952034 | MS.gene88766:CDS |
| TGACAGTATTCACATCAAAG+AGG | 0.689556 | 5.4:+54959311 | MS.gene88766:CDS |
| TTCTCTGAACTTGTACAGGG+CGG | 0.695410 | 5.4:+54962454 | MS.gene88766:CDS |
| TTAGGATGATGATCAAGACA+AGG | 0.697149 | 5.4:+54963969 | MS.gene88766:intron |
| CTTGTAGGAGAAATCGCGTG+AGG | 0.698612 | 5.4:+54960641 | MS.gene88766:intron |
| AGAAAGAAGGAAAGAAAGCG+GGG | 0.698971 | 5.4:+54960916 | MS.gene88766:intron |
| TGTCTGTGAATAGGTTGACA+AGG | 0.707821 | 5.4:+54951581 | MS.gene88766:intron |
| GGTAGGATATCAGAACTCTG+TGG | 0.710062 | 5.4:-54957830 | None:intergenic |
| GACATGATAGGTACAAACAG+AGG | 0.718579 | 5.4:+54961755 | MS.gene88766:intron |
| TCTCAGATATCACATTAACA+CGG | 0.733641 | 5.4:-54965747 | None:intergenic |
| TTTAGGACTGAAATCCTCCG+TGG | 0.739596 | 5.4:-54949867 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 54949613 | 54965819 | 54949613 | ID=MS.gene88766 |
| chr5.4 | mRNA | 54949613 | 54965819 | 54949613 | ID=MS.gene88766.t1;Parent=MS.gene88766 |
| chr5.4 | exon | 54949613 | 54949627 | 54949613 | ID=MS.gene88766.t1.exon1;Parent=MS.gene88766.t1 |
| chr5.4 | CDS | 54949613 | 54949627 | 54949613 | ID=cds.MS.gene88766.t1;Parent=MS.gene88766.t1 |
| chr5.4 | exon | 54949827 | 54949902 | 54949827 | ID=MS.gene88766.t1.exon2;Parent=MS.gene88766.t1 |
| chr5.4 | CDS | 54949827 | 54949902 | 54949827 | ID=cds.MS.gene88766.t1;Parent=MS.gene88766.t1 |
| chr5.4 | exon | 54950377 | 54950415 | 54950377 | ID=MS.gene88766.t1.exon3;Parent=MS.gene88766.t1 |
| chr5.4 | CDS | 54950377 | 54950415 | 54950377 | ID=cds.MS.gene88766.t1;Parent=MS.gene88766.t1 |
| chr5.4 | exon | 54950547 | 54950614 | 54950547 | ID=MS.gene88766.t1.exon4;Parent=MS.gene88766.t1 |
| chr5.4 | CDS | 54950547 | 54950614 | 54950547 | ID=cds.MS.gene88766.t1;Parent=MS.gene88766.t1 |
| chr5.4 | exon | 54950723 | 54950794 | 54950723 | ID=MS.gene88766.t1.exon5;Parent=MS.gene88766.t1 |
| chr5.4 | CDS | 54950723 | 54950794 | 54950723 | ID=cds.MS.gene88766.t1;Parent=MS.gene88766.t1 |
| chr5.4 | exon | 54951594 | 54951673 | 54951594 | ID=MS.gene88766.t1.exon6;Parent=MS.gene88766.t1 |
| chr5.4 | CDS | 54951594 | 54951673 | 54951594 | ID=cds.MS.gene88766.t1;Parent=MS.gene88766.t1 |
| chr5.4 | exon | 54951811 | 54951889 | 54951811 | ID=MS.gene88766.t1.exon7;Parent=MS.gene88766.t1 |
| chr5.4 | CDS | 54951811 | 54951889 | 54951811 | ID=cds.MS.gene88766.t1;Parent=MS.gene88766.t1 |
| chr5.4 | exon | 54951995 | 54952112 | 54951995 | ID=MS.gene88766.t1.exon8;Parent=MS.gene88766.t1 |
| chr5.4 | CDS | 54951995 | 54952112 | 54951995 | ID=cds.MS.gene88766.t1;Parent=MS.gene88766.t1 |
| chr5.4 | exon | 54952512 | 54952687 | 54952512 | ID=MS.gene88766.t1.exon9;Parent=MS.gene88766.t1 |
| chr5.4 | CDS | 54952512 | 54952687 | 54952512 | ID=cds.MS.gene88766.t1;Parent=MS.gene88766.t1 |
| chr5.4 | exon | 54954030 | 54954275 | 54954030 | ID=MS.gene88766.t1.exon10;Parent=MS.gene88766.t1 |
| chr5.4 | CDS | 54954030 | 54954275 | 54954030 | ID=cds.MS.gene88766.t1;Parent=MS.gene88766.t1 |
| chr5.4 | exon | 54954370 | 54954491 | 54954370 | ID=MS.gene88766.t1.exon11;Parent=MS.gene88766.t1 |
| chr5.4 | CDS | 54954370 | 54954491 | 54954370 | ID=cds.MS.gene88766.t1;Parent=MS.gene88766.t1 |
| chr5.4 | exon | 54954754 | 54954898 | 54954754 | ID=MS.gene88766.t1.exon12;Parent=MS.gene88766.t1 |
| chr5.4 | CDS | 54954754 | 54954898 | 54954754 | ID=cds.MS.gene88766.t1;Parent=MS.gene88766.t1 |
| chr5.4 | exon | 54956092 | 54956264 | 54956092 | ID=MS.gene88766.t1.exon13;Parent=MS.gene88766.t1 |
| chr5.4 | CDS | 54956092 | 54956264 | 54956092 | ID=cds.MS.gene88766.t1;Parent=MS.gene88766.t1 |
| chr5.4 | exon | 54956360 | 54956459 | 54956360 | ID=MS.gene88766.t1.exon14;Parent=MS.gene88766.t1 |
| chr5.4 | CDS | 54956360 | 54956459 | 54956360 | ID=cds.MS.gene88766.t1;Parent=MS.gene88766.t1 |
| chr5.4 | exon | 54957341 | 54957477 | 54957341 | ID=MS.gene88766.t1.exon15;Parent=MS.gene88766.t1 |
| chr5.4 | CDS | 54957341 | 54957477 | 54957341 | ID=cds.MS.gene88766.t1;Parent=MS.gene88766.t1 |
| chr5.4 | exon | 54957703 | 54957904 | 54957703 | ID=MS.gene88766.t1.exon16;Parent=MS.gene88766.t1 |
| chr5.4 | CDS | 54957703 | 54957904 | 54957703 | ID=cds.MS.gene88766.t1;Parent=MS.gene88766.t1 |
| chr5.4 | exon | 54959045 | 54959132 | 54959045 | ID=MS.gene88766.t1.exon17;Parent=MS.gene88766.t1 |
| chr5.4 | CDS | 54959045 | 54959132 | 54959045 | ID=cds.MS.gene88766.t1;Parent=MS.gene88766.t1 |
| chr5.4 | exon | 54959217 | 54959347 | 54959217 | ID=MS.gene88766.t1.exon18;Parent=MS.gene88766.t1 |
| chr5.4 | CDS | 54959217 | 54959347 | 54959217 | ID=cds.MS.gene88766.t1;Parent=MS.gene88766.t1 |
| chr5.4 | exon | 54960380 | 54960529 | 54960380 | ID=MS.gene88766.t1.exon19;Parent=MS.gene88766.t1 |
| chr5.4 | CDS | 54960380 | 54960529 | 54960380 | ID=cds.MS.gene88766.t1;Parent=MS.gene88766.t1 |
| chr5.4 | exon | 54960648 | 54960839 | 54960648 | ID=MS.gene88766.t1.exon20;Parent=MS.gene88766.t1 |
| chr5.4 | CDS | 54960648 | 54960839 | 54960648 | ID=cds.MS.gene88766.t1;Parent=MS.gene88766.t1 |
| chr5.4 | exon | 54960918 | 54961101 | 54960918 | ID=MS.gene88766.t1.exon21;Parent=MS.gene88766.t1 |
| chr5.4 | CDS | 54960918 | 54961101 | 54960918 | ID=cds.MS.gene88766.t1;Parent=MS.gene88766.t1 |
| chr5.4 | exon | 54961187 | 54961257 | 54961187 | ID=MS.gene88766.t1.exon22;Parent=MS.gene88766.t1 |
| chr5.4 | CDS | 54961187 | 54961257 | 54961187 | ID=cds.MS.gene88766.t1;Parent=MS.gene88766.t1 |
| chr5.4 | exon | 54961328 | 54961479 | 54961328 | ID=MS.gene88766.t1.exon23;Parent=MS.gene88766.t1 |
| chr5.4 | CDS | 54961328 | 54961479 | 54961328 | ID=cds.MS.gene88766.t1;Parent=MS.gene88766.t1 |
| chr5.4 | exon | 54961765 | 54961933 | 54961765 | ID=MS.gene88766.t1.exon24;Parent=MS.gene88766.t1 |
| chr5.4 | CDS | 54961765 | 54961933 | 54961765 | ID=cds.MS.gene88766.t1;Parent=MS.gene88766.t1 |
| chr5.4 | exon | 54962361 | 54962504 | 54962361 | ID=MS.gene88766.t1.exon25;Parent=MS.gene88766.t1 |
| chr5.4 | CDS | 54962361 | 54962504 | 54962361 | ID=cds.MS.gene88766.t1;Parent=MS.gene88766.t1 |
| chr5.4 | exon | 54963973 | 54964053 | 54963973 | ID=MS.gene88766.t1.exon26;Parent=MS.gene88766.t1 |
| chr5.4 | CDS | 54963973 | 54964053 | 54963973 | ID=cds.MS.gene88766.t1;Parent=MS.gene88766.t1 |
| chr5.4 | exon | 54964668 | 54964842 | 54964668 | ID=MS.gene88766.t1.exon27;Parent=MS.gene88766.t1 |
| chr5.4 | CDS | 54964668 | 54964842 | 54964668 | ID=cds.MS.gene88766.t1;Parent=MS.gene88766.t1 |
| chr5.4 | exon | 54965629 | 54965819 | 54965629 | ID=MS.gene88766.t1.exon28;Parent=MS.gene88766.t1 |
| chr5.4 | CDS | 54965629 | 54965819 | 54965629 | ID=cds.MS.gene88766.t1;Parent=MS.gene88766.t1 |
| Gene Sequence |
| Protein sequence |
