Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88803.t1 | RYQ81366.1 | 52.1 | 647 | 269 | 6 | 81 | 711 | 63 | 684 | 3.00E-188 | 668.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88803.t1 | O03376 | 79.8 | 326 | 63 | 2 | 389 | 711 | 1 | 326 | 4.4e-148 | 526.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88803.t1 | A0A3Q7HT64 | 54.5 | 631 | 229 | 5 | 81 | 711 | 70 | 642 | 2.6e-189 | 671.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene88803 | 0.814562 | 1.45E-51 | -1.69E-46 |
| MS.gene054892 | MS.gene88803 | 0.814248 | 1.70E-51 | -1.69E-46 |
| MS.gene054893 | MS.gene88803 | 0.824893 | 6.30E-54 | -1.69E-46 |
| MS.gene055150 | MS.gene88803 | 0.813588 | 2.37E-51 | -1.69E-46 |
| MS.gene057093 | MS.gene88803 | 0.81805 | 2.40E-52 | -1.69E-46 |
| MS.gene057622 | MS.gene88803 | 0.835938 | 1.25E-56 | -1.69E-46 |
| MS.gene05878 | MS.gene88803 | 0.822692 | 2.07E-53 | -1.69E-46 |
| MS.gene06023 | MS.gene88803 | 0.814175 | 1.76E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88803.t1 | MTR_5g070680 | 94.737 | 323 | 17 | 0 | 389 | 711 | 1 | 323 | 0.0 | 642 |
| MS.gene88803.t1 | MTR_5g070680 | 89.329 | 328 | 29 | 2 | 1 | 328 | 1 | 322 | 0.0 | 607 |
| MS.gene88803.t1 | MTR_5g070870 | 93.293 | 328 | 17 | 1 | 1 | 328 | 1 | 323 | 0.0 | 616 |
| MS.gene88803.t1 | MTR_5g070870 | 87.654 | 324 | 39 | 1 | 389 | 711 | 1 | 324 | 0.0 | 575 |
| MS.gene88803.t1 | MTR_4g094222 | 69.085 | 317 | 87 | 3 | 22 | 328 | 29 | 344 | 8.65e-157 | 457 |
| MS.gene88803.t1 | MTR_4g094222 | 66.149 | 322 | 94 | 1 | 405 | 711 | 24 | 345 | 2.09e-154 | 451 |
| MS.gene88803.t1 | MTR_5g026620 | 63.121 | 282 | 99 | 2 | 51 | 328 | 49 | 329 | 2.80e-131 | 391 |
| MS.gene88803.t1 | MTR_5g026620 | 63.177 | 277 | 102 | 0 | 435 | 711 | 54 | 330 | 7.72e-131 | 390 |
| MS.gene88803.t1 | MTR_5g026620 | 69.778 | 225 | 68 | 0 | 104 | 328 | 37 | 261 | 1.90e-116 | 350 |
| MS.gene88803.t1 | MTR_5g026620 | 69.469 | 226 | 69 | 0 | 486 | 711 | 37 | 262 | 2.19e-116 | 350 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88803.t1 | AT5G64210 | 68.551 | 283 | 84 | 3 | 434 | 711 | 71 | 353 | 1.79e-141 | 418 |
| MS.gene88803.t1 | AT5G64210 | 66.782 | 289 | 88 | 3 | 44 | 328 | 68 | 352 | 2.82e-140 | 415 |
| MS.gene88803.t1 | AT3G22370 | 65.568 | 273 | 94 | 0 | 56 | 328 | 81 | 353 | 3.73e-136 | 405 |
| MS.gene88803.t1 | AT3G22370 | 54.571 | 350 | 124 | 5 | 390 | 711 | 12 | 354 | 3.15e-134 | 400 |
| MS.gene88803.t1 | AT3G22360 | 63.538 | 277 | 101 | 0 | 52 | 328 | 48 | 324 | 1.93e-132 | 394 |
| MS.gene88803.t1 | AT3G22360 | 63.333 | 270 | 99 | 0 | 442 | 711 | 56 | 325 | 3.32e-130 | 388 |
| MS.gene88803.t1 | AT3G27620 | 65.769 | 260 | 89 | 0 | 69 | 328 | 69 | 328 | 1.44e-129 | 387 |
| MS.gene88803.t1 | AT3G27620 | 64.368 | 261 | 93 | 0 | 451 | 711 | 69 | 329 | 3.66e-128 | 383 |
| MS.gene88803.t1 | AT1G32350 | 60.000 | 300 | 109 | 2 | 423 | 711 | 19 | 318 | 2.28e-129 | 386 |
| MS.gene88803.t1 | AT1G32350 | 57.911 | 316 | 127 | 2 | 19 | 328 | 2 | 317 | 4.26e-129 | 385 |
| MS.gene88803.t1 | AT1G32350 | 57.718 | 298 | 120 | 2 | 19 | 310 | 2 | 299 | 2.69e-120 | 362 |
| MS.gene88803.t1 | AT1G32350 | 59.075 | 281 | 104 | 2 | 423 | 692 | 19 | 299 | 1.15e-117 | 355 |
Find 146 sgRNAs with CRISPR-Local
Find 299 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTATTGCAATTGATTAT+TGG | 0.137756 | 5.4:-55459975 | MS.gene88803:CDS |
| CTGCTATTGCTATTGATTAT+TGG | 0.140551 | 5.4:-55456693 | MS.gene88803:CDS |
| CTTTCAATTCCTTTCCTTGA+TGG | 0.150163 | 5.4:+55459170 | None:intergenic |
| TGATTGGGTGAGAGACTTTC+AGG | 0.164669 | 5.4:+55458983 | None:intergenic |
| ACATAGGTTTGTTGGTTATT+TGG | 0.199576 | 5.4:-55456791 | MS.gene88803:CDS |
| ACATAGATTTGTTGGTTATT+TGG | 0.210434 | 5.4:-55460073 | MS.gene88803:CDS |
| TCAGATCTGTCAAGTTTCTA+AGG | 0.220365 | 5.4:-55457641 | MS.gene88803:CDS |
| ACGCCGTGGTTTCGAGTTAC+TGG | 0.248723 | 5.4:-55461499 | MS.gene88803:CDS |
| TCACTAGGCCCAAGGTTAAA+AGG | 0.260435 | 5.4:-55458129 | MS.gene88803:CDS |
| CAAGAGCGCCACCGCCATTC+TGG | 0.273793 | 5.4:+55458263 | None:intergenic |
| GTCAACTTTGCCAGAGAAAA+AGG | 0.274817 | 5.4:-55461576 | MS.gene88803:CDS |
| GTCAACTCTGCCAGAGAAAA+AGG | 0.288648 | 5.4:-55458218 | MS.gene88803:CDS |
| ACACCGTCGTTTCGAGTTAC+TGG | 0.299309 | 5.4:-55458156 | MS.gene88803:CDS |
| AAAATAGCACATAGATTTGT+TGG | 0.333247 | 5.4:-55460081 | MS.gene88803:CDS |
| CCATCCTCCTTAAGAATCTT+AGG | 0.339325 | 5.4:+55461464 | None:intergenic |
| AGCATCCCTCCCACCATTCC+AGG | 0.354203 | 5.4:+55460303 | None:intergenic |
| TAATTACTGCAGGAACGATA+TGG | 0.355715 | 5.4:-55460363 | MS.gene88803:intron |
| CCACCAAACAATTCCTTGAT+TGG | 0.358528 | 5.4:+55458967 | None:intergenic |
| CAGAATGGCGGTGGCGCTCT+TGG | 0.366629 | 5.4:-55458262 | MS.gene88803:CDS |
| CACCCAATCAAGGAATTGTT+TGG | 0.379891 | 5.4:-55458970 | MS.gene88803:CDS |
| GGTGATGATCATCTATCTAC+AGG | 0.399455 | 5.4:-55458940 | MS.gene88803:CDS |
| AAGTTGGCATGAAAGGCTTT+TGG | 0.400981 | 5.4:-55456881 | MS.gene88803:CDS |
| GTACTTACTTGCTACAAAGT+TGG | 0.410692 | 5.4:+55458617 | None:intergenic |
| GCTCTCTGATTTATACTTCA+AGG | 0.411153 | 5.4:-55460696 | MS.gene88803:intron |
| AAGGAATTGTTTGGTGGTCT+TGG | 0.413681 | 5.4:-55458961 | MS.gene88803:CDS |
| TCAGATCTGTCAAGTTTCTA+CGG | 0.416301 | 5.4:-55460721 | MS.gene88803:CDS |
| TCCTAAGGATGCAACTCTTA+AGG | 0.422607 | 5.4:-55456665 | MS.gene88803:CDS |
| CTGTTATTACTGCTATTGTT+GGG | 0.423703 | 5.4:+55461524 | None:intergenic |
| CGCCGTGGTTTCGAGTTACT+GGG | 0.425383 | 5.4:-55461498 | MS.gene88803:CDS |
| GTGCTGATGAGGCTCATCAT+AGG | 0.433399 | 5.4:-55459906 | MS.gene88803:CDS |
| GCTGTTATTACTGCTATTGT+TGG | 0.434713 | 5.4:+55461523 | None:intergenic |
| AAAAGCCTCTCATGCCAACT+TGG | 0.437573 | 5.4:+55460165 | None:intergenic |
| TGTTGGTTATTTGGAGGAAG+AGG | 0.444234 | 5.4:-55456782 | MS.gene88803:CDS |
| CACCAAACAATTCCTTGATT+GGG | 0.444770 | 5.4:+55458968 | None:intergenic |
| TCTTTAAGAGTTGCATCCTT+AGG | 0.446114 | 5.4:+55459946 | None:intergenic |
| AAAACAGCACATAGGTTTGT+TGG | 0.451661 | 5.4:-55456799 | MS.gene88803:CDS |
| AAAAGCCTTTCATGCCAACT+TGG | 0.452120 | 5.4:+55456883 | None:intergenic |
| TGCTGATGAGGCTCATCATA+TGG | 0.456557 | 5.4:-55456623 | MS.gene88803:CDS |
| CAGTAGGCCTAAGATTCTTA+AGG | 0.458003 | 5.4:-55461471 | MS.gene88803:CDS |
| CACCGTCGTTTCGAGTTACT+GGG | 0.458130 | 5.4:-55458155 | MS.gene88803:CDS |
| CAGATCTGTCAAGTTTCTAC+GGG | 0.458497 | 5.4:-55460720 | MS.gene88803:CDS |
| GAAACAATAGCAGCTGTCCC+TGG | 0.459329 | 5.4:-55460321 | MS.gene88803:CDS |
| AAAAGCATCCCTCCGACTAT+TGG | 0.460383 | 5.4:+55457018 | None:intergenic |
| GCGCTCTTGGAAGCTTCTAC+TGG | 0.467431 | 5.4:-55458249 | MS.gene88803:CDS |
| TATAATTAGGAATGGGATCA+AGG | 0.467996 | 5.4:-55458684 | MS.gene88803:intron |
| AAGTTGGCATGAGAGGCTTT+TGG | 0.469081 | 5.4:-55460163 | MS.gene88803:CDS |
| TAAAACCAAGTTGGCATGAA+AGG | 0.474110 | 5.4:-55456888 | MS.gene88803:CDS |
| CACTAGGCCCAAGGTTAAAA+GGG | 0.475986 | 5.4:-55458128 | MS.gene88803:CDS |
| TCCTTAAGAGTTGCATCCTT+AGG | 0.476176 | 5.4:+55456664 | None:intergenic |
| CATTTAAATGCAATTGAAAG+TGG | 0.479306 | 5.4:-55456739 | MS.gene88803:CDS |
| CAGATCTGTCAAGTTTCTAA+GGG | 0.482561 | 5.4:-55457640 | MS.gene88803:CDS |
| TTGTAGGATATTCACCATCA+AGG | 0.489202 | 5.4:-55456106 | MS.gene88803:intron |
| TTGTAGGATATTCACCATCA+AGG | 0.489202 | 5.4:-55459184 | MS.gene88803:intron |
| CAATGATAACCAACAGGAGC+TGG | 0.493882 | 5.4:+55456064 | None:intergenic |
| CAATGATAACCAACAGGAGC+TGG | 0.493882 | 5.4:+55459142 | None:intergenic |
| TGATTATTGGAGACTTCCTA+AGG | 0.494224 | 5.4:-55456680 | MS.gene88803:CDS |
| GAAAGTCTCTCACCCAATCA+AGG | 0.498667 | 5.4:-55458980 | MS.gene88803:CDS |
| CAATAATCAATTGCAATAGC+AGG | 0.503907 | 5.4:+55459976 | None:intergenic |
| AGCATCCCTCCGACTATTGG+CGG | 0.504033 | 5.4:+55457021 | None:intergenic |
| GTGGCCATGGAACTGCTTCA+TGG | 0.504226 | 5.4:-55461435 | MS.gene88803:intron |
| AATTTCAACACGCTGGTGGT+TGG | 0.504805 | 5.4:-55460257 | MS.gene88803:CDS |
| GTGCGTGTGGAAGCTTGTAC+TGG | 0.504974 | 5.4:-55461607 | MS.gene88803:CDS |
| CGAGCTTTGTTCCGCAGTGG+TGG | 0.509292 | 5.4:-55461695 | MS.gene88803:CDS |
| AGGGTTGATGCTTCACAGAA+TGG | 0.510337 | 5.4:-55458920 | MS.gene88803:CDS |
| ATAAACCGCGGTGATAGCTC+TGG | 0.513422 | 5.4:+55458314 | None:intergenic |
| CTGACTCAATGATAACCAAC+AGG | 0.514059 | 5.4:+55456058 | None:intergenic |
| TTGAAGAAGCAGAGAATGAA+AGG | 0.517469 | 5.4:-55456939 | MS.gene88803:CDS |
| TTGAAGAAGCAGAGAATGAA+AGG | 0.517469 | 5.4:-55460221 | MS.gene88803:CDS |
| CCTAAGATTCTTAAGGAGGA+TGG | 0.518028 | 5.4:-55461464 | MS.gene88803:CDS |
| AGGATGGAACTGAGTGGCCA+TGG | 0.518415 | 5.4:-55458105 | MS.gene88803:CDS |
| AGGATGGAACTGAGTGGCCA+TGG | 0.518415 | 5.4:-55461448 | MS.gene88803:CDS |
| TAGATTTGTTGGTTATTTGG+AGG | 0.518817 | 5.4:-55460070 | MS.gene88803:CDS |
| TGCTGATGAGGCTCATCATA+GGG | 0.523825 | 5.4:-55459905 | MS.gene88803:CDS |
| TGAAACCAAGTTGGCATGAG+AGG | 0.527939 | 5.4:-55460170 | MS.gene88803:CDS |
| TGATTATTGGAGACTTCCTA+AGG | 0.530834 | 5.4:-55459962 | MS.gene88803:CDS |
| CGGATGTCATGCAATGATGC+TGG | 0.534003 | 5.4:-55457061 | MS.gene88803:CDS |
| TAGGTTTGTTGGTTATTTGG+AGG | 0.534495 | 5.4:-55456788 | MS.gene88803:CDS |
| AGCAGCTGTCCCTGGAATGG+TGG | 0.537892 | 5.4:-55460313 | MS.gene88803:CDS |
| GTGGCCATGGAACTGTTTCA+TGG | 0.541418 | 5.4:-55458092 | MS.gene88803:intron |
| CAGCATGGCGGTGGTGCGTG+TGG | 0.542247 | 5.4:-55461620 | MS.gene88803:CDS |
| CTGTCCCTGGAATGGTGGGA+GGG | 0.543809 | 5.4:-55460308 | MS.gene88803:CDS |
| AATTTCAACACACTGGTGGT+TGG | 0.547562 | 5.4:-55456975 | MS.gene88803:CDS |
| CCGCCATGCTGATGTTGTCT+CGG | 0.548514 | 5.4:+55461632 | None:intergenic |
| CACTGTTATCCGTGCTGATG+AGG | 0.548694 | 5.4:-55459917 | MS.gene88803:CDS |
| CCACCGCCATTCTGGTGTCT+CGG | 0.549588 | 5.4:+55458271 | None:intergenic |
| AGACAACATCAGCATGGCGG+TGG | 0.550470 | 5.4:-55461629 | MS.gene88803:CDS |
| CAATAATCAATAGCAATAGC+AGG | 0.550641 | 5.4:+55456694 | None:intergenic |
| CCAATCAAGGAATTGTTTGG+TGG | 0.552609 | 5.4:-55458967 | MS.gene88803:CDS |
| CCCAAGGTTAAAAGGGAGGA+TGG | 0.553186 | 5.4:-55458121 | MS.gene88803:CDS |
| CACTATTATCCGTGCTGATG+AGG | 0.555990 | 5.4:-55456635 | MS.gene88803:CDS |
| TCAATAGCAATAGCAGGAGC+AGG | 0.557374 | 5.4:+55456700 | None:intergenic |
| TCAATTGCAATAGCAGGAGC+AGG | 0.557374 | 5.4:+55459982 | None:intergenic |
| AGAAAATTTCAACACGCTGG+TGG | 0.561109 | 5.4:-55460261 | MS.gene88803:CDS |
| TCAAGGAAAAGAACTGAAAG+AGG | 0.563153 | 5.4:-55456089 | MS.gene88803:CDS |
| CCGAGACACCAGAATGGCGG+TGG | 0.566922 | 5.4:-55458271 | MS.gene88803:CDS |
| CTTACCATGAAGCAGTTCCA+TGG | 0.568629 | 5.4:+55461431 | None:intergenic |
| AATAGCAGCTGTCCCTGGAA+TGG | 0.571632 | 5.4:-55460316 | MS.gene88803:CDS |
| GCATCCCTCCGACTATTGGC+GGG | 0.580470 | 5.4:+55457022 | None:intergenic |
| TTGTTTCTAGCATCATTGCA+TGG | 0.582988 | 5.4:+55460337 | None:intergenic |
| TCAAGGAAAGGAATTGAAAG+AGG | 0.585266 | 5.4:-55459167 | MS.gene88803:CDS |
| AAAGAGGCTCCAGCTCCTGT+TGG | 0.585296 | 5.4:-55456073 | MS.gene88803:CDS |
| GCTGTCCCTGGAATGGTGGG+AGG | 0.588333 | 5.4:-55460309 | MS.gene88803:CDS |
| GCAGCCGTCCCGCCAATAGT+CGG | 0.589897 | 5.4:-55457030 | MS.gene88803:CDS |
| GCAGCTGTCCCTGGAATGGT+GGG | 0.590768 | 5.4:-55460312 | MS.gene88803:CDS |
| AGAAAATTTCAACACACTGG+TGG | 0.593623 | 5.4:-55456979 | MS.gene88803:CDS |
| GCCGTCCCGCCAATAGTCGG+AGG | 0.600590 | 5.4:-55457027 | MS.gene88803:CDS |
| CCCTCCGACTATTGGCGGGA+CGG | 0.602858 | 5.4:+55457026 | None:intergenic |
| GGATATTCACCATCAAGGAA+AGG | 0.604645 | 5.4:-55459179 | MS.gene88803:CDS |
| CTTACCATGAAACAGTTCCA+TGG | 0.606074 | 5.4:+55458088 | None:intergenic |
| CATTTACATGCAATTGAGAG+TGG | 0.609097 | 5.4:-55460021 | MS.gene88803:CDS |
| GAGCTTTGTTCCGCAGTGGT+GGG | 0.613944 | 5.4:-55461694 | MS.gene88803:CDS |
| GTGGAAGCTTGTACTGGCAG+AGG | 0.617429 | 5.4:-55461601 | MS.gene88803:CDS |
| TAGAGCTTGTAAAACCAAGT+TGG | 0.618027 | 5.4:-55456897 | MS.gene88803:CDS |
| CTAAGAAAATTTCAACACGC+TGG | 0.618947 | 5.4:-55460264 | MS.gene88803:CDS |
| GCATCCCTCCCACCATTCCA+GGG | 0.622243 | 5.4:+55460304 | None:intergenic |
| AAACTTGTTACTAAGGTCAA+CGG | 0.622396 | 5.4:-55458359 | MS.gene88803:CDS |
| CTAAGAAAATTTCAACACAC+TGG | 0.624723 | 5.4:-55456982 | MS.gene88803:CDS |
| GCCGTGGTTTCGAGTTACTG+GGG | 0.627292 | 5.4:-55461497 | MS.gene88803:CDS |
| TCTGAGCTGTAACTTTCCCA+TGG | 0.628662 | 5.4:+55457723 | None:intergenic |
| CCGTGGTTTCGAGTTACTGG+GGG | 0.630421 | 5.4:-55461496 | MS.gene88803:CDS |
| TATGATGAGCCTCATCAGCA+CGG | 0.637725 | 5.4:+55459908 | None:intergenic |
| CCGTCCCGCCAATAGTCGGA+GGG | 0.638014 | 5.4:-55457026 | MS.gene88803:CDS |
| TAGGCCTAAGATTCTTAAGG+AGG | 0.638954 | 5.4:-55461468 | MS.gene88803:CDS |
| TCTGAACTGTAACTTTCCCA+TGG | 0.639567 | 5.4:+55460803 | None:intergenic |
| TATGATGAGCCTCATCAGCA+CGG | 0.640208 | 5.4:+55456626 | None:intergenic |
| GGATGTCAATCACTTTGCGT+CGG | 0.643344 | 5.4:-55456602 | MS.gene88803:intron |
| GTTCAGCCGAGACACCAGAA+TGG | 0.652102 | 5.4:-55458277 | MS.gene88803:CDS |
| TTGAGCTTGTGAAACCAAGT+TGG | 0.652337 | 5.4:-55460179 | MS.gene88803:CDS |
| CCGTCGTTTCGAGTTACTGG+GGG | 0.659766 | 5.4:-55458153 | MS.gene88803:CDS |
| CAGCCGAGACACCAGAATGG+CGG | 0.659819 | 5.4:-55458274 | MS.gene88803:CDS |
| GTGATGATCATCTATCTACA+GGG | 0.666027 | 5.4:-55458939 | MS.gene88803:CDS |
| TAACTGCTGCAGGAACGGTA+CGG | 0.667013 | 5.4:-55457081 | MS.gene88803:intron |
| CAGTAATAACAGCAACGCCG+TGG | 0.669597 | 5.4:-55461513 | MS.gene88803:CDS |
| AAGGATGCATTTGATGACAA+TGG | 0.671655 | 5.4:-55460202 | MS.gene88803:CDS |
| ACCGTCGTTTCGAGTTACTG+GGG | 0.673804 | 5.4:-55458154 | MS.gene88803:CDS |
| TAGGCCCAAGGTTAAAAGGG+AGG | 0.675638 | 5.4:-55458125 | MS.gene88803:CDS |
| CAGCCGAGACAACATCAGCA+TGG | 0.676336 | 5.4:-55461635 | MS.gene88803:CDS |
| ACACGAGCTTTGTTCCGCAG+TGG | 0.677389 | 5.4:-55461698 | MS.gene88803:CDS |
| AAGGATGCATTTGATGACAA+TGG | 0.707267 | 5.4:-55456920 | MS.gene88803:CDS |
| CCGAGACAACATCAGCATGG+CGG | 0.731392 | 5.4:-55461632 | MS.gene88803:CDS |
| TCACCGCGGTTTATCAACTG+CGG | 0.737624 | 5.4:-55458305 | MS.gene88803:CDS |
| AAAGGGAGGATGGAACTGAG+TGG | 0.744791 | 5.4:-55458111 | MS.gene88803:CDS |
| TTAAGGAGGATGGAACTGAG+TGG | 0.746044 | 5.4:-55461454 | MS.gene88803:CDS |
| GGTGGTAGTTCCCACCACTG+CGG | 0.755021 | 5.4:+55461684 | None:intergenic |
| TCACCGCAGTTGATAAACCG+CGG | 0.755774 | 5.4:+55458302 | None:intergenic |
| AGTAGCCAGAGCTATCACCG+CGG | 0.858501 | 5.4:-55458319 | MS.gene88803:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATCATATATAAAATAACA+AGG | + | chr5.4:55459346-55459365 | None:intergenic | 10.0% |
| !! | TTTAAAAAATGAATCTAATA+TGG | - | chr5.4:55459039-55459058 | MS.gene88803:intron | 10.0% |
| !!! | AATGTTAAGATTTATATTTT+AGG | - | chr5.4:55458072-55458091 | MS.gene88803:intron | 10.0% |
| !!! | ATTTTCTCAAAAAAAAAAAA+TGG | - | chr5.4:55461564-55461583 | MS.gene88803:CDS | 10.0% |
| !!! | TTTTAAAGAATCTTATAATT+AGG | - | chr5.4:55459091-55459110 | MS.gene88803:intron | 10.0% |
| !! | AAAACAAAAGTCTATTTATA+AGG | - | chr5.4:55461532-55461551 | MS.gene88803:CDS | 15.0% |
| !! | ACACAATTATAATGAAAATT+TGG | + | chr5.4:55457936-55457955 | None:intergenic | 15.0% |
| !! | ACTAAGATGATATATTTATA+GGG | + | chr5.4:55461280-55461299 | None:intergenic | 15.0% |
| !! | ATAAAAAACTTTATTCTTAG+TGG | - | chr5.4:55460411-55460430 | MS.gene88803:intron | 15.0% |
| !! | ATGAAACATAAAAATTACTT+AGG | - | chr5.4:55457173-55457192 | MS.gene88803:intron | 15.0% |
| !! | ATTTAACGAATAATTAAACA+TGG | - | chr5.4:55459207-55459226 | MS.gene88803:intron | 15.0% |
| !! | GTTTATAATGAATTATTAAG+CGG | + | chr5.4:55459783-55459802 | None:intergenic | 15.0% |
| !! | TAGTAAAATCAATATTAGTT+TGG | - | chr5.4:55458894-55458913 | MS.gene88803:intron | 15.0% |
| !! | TGAAACATAAAAATTACTTA+GGG | - | chr5.4:55457174-55457193 | MS.gene88803:intron | 15.0% |
| !! | TTCAAATTCTATATTTATAG+AGG | + | chr5.4:55457978-55457997 | None:intergenic | 15.0% |
| !! | TTCATTATAATTGTGTTAAA+AGG | - | chr5.4:55457940-55457959 | MS.gene88803:intron | 15.0% |
| !!! | ATTTTTGAAGAATTTTTTGT+GGG | + | chr5.4:55458240-55458259 | None:intergenic | 15.0% |
| !!! | ATTTTTTAAATGTATCTCAT+AGG | + | chr5.4:55459029-55459048 | None:intergenic | 15.0% |
| !!! | CTCAAATCAAATTTTTTTAA+TGG | + | chr5.4:55456807-55456826 | None:intergenic | 15.0% |
| !!! | TAACACATTAAATTGTTTTT+TGG | + | chr5.4:55457285-55457304 | None:intergenic | 15.0% |
| !!! | TATTTTTGAAGAATTTTTTG+TGG | + | chr5.4:55458241-55458260 | None:intergenic | 15.0% |
| !!! | TCAATTTAAAGTTAATTCTA+GGG | - | chr5.4:55456879-55456898 | MS.gene88803:CDS | 15.0% |
| !!! | TTTTATTTATTGAACAATTC+AGG | + | chr5.4:55458760-55458779 | None:intergenic | 15.0% |
| !! | AAAGAATTTATGAAAAAAGC+CGG | + | chr5.4:55456568-55456587 | None:intergenic | 20.0% |
| !! | AAGAATACATATATAGAAAG+AGG | - | chr5.4:55456377-55456396 | MS.gene88803:intron | 20.0% |
| !! | AAGAATCTTATAATTAGGAA+TGG | - | chr5.4:55459096-55459115 | MS.gene88803:intron | 20.0% |
| !! | AGAATCTTATAATTAGGAAT+GGG | - | chr5.4:55459097-55459116 | MS.gene88803:intron | 20.0% |
| !! | AGTGTCTAAAAAACTATAAT+GGG | + | chr5.4:55458531-55458550 | None:intergenic | 20.0% |
| !! | ATTTGAATTATAATTACTGC+AGG | - | chr5.4:55457415-55457434 | MS.gene88803:intron | 20.0% |
| !! | GAATTTGAATTAATTGTGAT+AGG | - | chr5.4:55457989-55458008 | MS.gene88803:intron | 20.0% |
| !! | GACTAAGATGATATATTTAT+AGG | + | chr5.4:55461281-55461300 | None:intergenic | 20.0% |
| !! | TATTGTCCTTTGTTAAAAAT+TGG | - | chr5.4:55460369-55460388 | MS.gene88803:intron | 20.0% |
| !!! | AAAAAATTTGATTTGAGAGT+TGG | - | chr5.4:55456810-55456829 | MS.gene88803:CDS | 20.0% |
| !!! | ATAGAAGAATTTTGATTGAT+GGG | - | chr5.4:55460666-55460685 | MS.gene88803:intron | 20.0% |
| !!! | ATTTTTATTTCAAGGTTTGT+GGG | - | chr5.4:55460180-55460199 | MS.gene88803:CDS | 20.0% |
| !!! | CTCAATTTAAAGTTAATTCT+AGG | - | chr5.4:55456878-55456897 | MS.gene88803:CDS | 20.0% |
| !!! | GTAAGTCTATCTAAAATTTT+AGG | + | chr5.4:55459853-55459872 | None:intergenic | 20.0% |
| !!! | TATCAGAAATGTCTTAATTT+TGG | - | chr5.4:55458944-55458963 | MS.gene88803:CDS | 20.0% |
| !!! | TCATAATTTTCATAGAGTAA+TGG | + | chr5.4:55460237-55460256 | None:intergenic | 20.0% |
| !!! | TTCAAACTTTGTTTCTTTAA+GGG | + | chr5.4:55458477-55458496 | None:intergenic | 20.0% |
| !!! | TTTCAAACTTTGTTTCTTTA+AGG | + | chr5.4:55458478-55458497 | None:intergenic | 20.0% |
| ! | AAAATAGCACATAGATTTGT+TGG | - | chr5.4:55457707-55457726 | MS.gene88803:CDS | 25.0% |
| ! | ATCATGTACCAAAAACATTT+GGG | - | chr5.4:55457031-55457050 | MS.gene88803:CDS | 25.0% |
| ! | ATTTATACTTCAAGGTATGT+GGG | - | chr5.4:55457100-55457119 | MS.gene88803:intron | 25.0% |
| ! | CATTTAAATGCAATTGAAAG+TGG | - | chr5.4:55461049-55461068 | MS.gene88803:intron | 25.0% |
| ! | GAGTGTCTAAAAAACTATAA+TGG | + | chr5.4:55458532-55458551 | None:intergenic | 25.0% |
| ! | GTTAAATCTTCAACGAAATT+TGG | - | chr5.4:55458105-55458124 | MS.gene88803:CDS | 25.0% |
| ! | TACAACACATTGAATTACTA+GGG | + | chr5.4:55460622-55460641 | None:intergenic | 25.0% |
| ! | TATCACATGAAAGTAATCAA+TGG | + | chr5.4:55456699-55456718 | None:intergenic | 25.0% |
| ! | TATGGATCGTCTTATATTTA+AGG | - | chr5.4:55459057-55459076 | MS.gene88803:intron | 25.0% |
| ! | TGTGTTATAGTAAATCAGAT+TGG | - | chr5.4:55457298-55457317 | MS.gene88803:intron | 25.0% |
| !! | AAACTTTTGAACAATATCAC+CGG | - | chr5.4:55456546-55456565 | MS.gene88803:intron | 25.0% |
| !! | AATCAATATTAGTTTGGCTT+TGG | - | chr5.4:55458900-55458919 | MS.gene88803:intron | 25.0% |
| !! | TAGTAGCCAATTTTTAACAA+AGG | + | chr5.4:55460378-55460397 | None:intergenic | 25.0% |
| !! | TTTTATCGAATAGATCAACT+CGG | + | chr5.4:55459938-55459957 | None:intergenic | 25.0% |
| !! | TTTTCTATGACTCAAATGTT+GGG | + | chr5.4:55460320-55460339 | None:intergenic | 25.0% |
| !!! | ACAAATCTATGTGCTATTTT+TGG | + | chr5.4:55457707-55457726 | None:intergenic | 25.0% |
| !!! | ACATAGATTTGTTGGTTATT+TGG | - | chr5.4:55457715-55457734 | MS.gene88803:CDS | 25.0% |
| !!! | ACATGAAAAACTTGTTACTA+AGG | - | chr5.4:55459422-55459441 | MS.gene88803:intron | 25.0% |
| !!! | CATAGAAGAATTTTGATTGA+TGG | - | chr5.4:55460665-55460684 | MS.gene88803:intron | 25.0% |
| !!! | GATTTTTATTTCAAGGTTTG+TGG | - | chr5.4:55460179-55460198 | MS.gene88803:CDS | 25.0% |
| !!! | GGGAATCAATATTTTTTTGT+TGG | + | chr5.4:55460602-55460621 | None:intergenic | 25.0% |
| !!! | TCTCTCTGATTTTTATTTCA+AGG | - | chr5.4:55460172-55460191 | MS.gene88803:CDS | 25.0% |
| !!! | TTAACACTTTAGTTCTTAGT+GGG | + | chr5.4:55460577-55460596 | None:intergenic | 25.0% |
| !!! | TTAATCATACTTTGAAGTCT+CGG | - | chr5.4:55461346-55461365 | MS.gene88803:intron | 25.0% |
| AAATTCTGTATTTGCCACAA+AGG | + | chr5.4:55459281-55459300 | None:intergenic | 30.0% | |
| AATCATTTCATTTGTGATGG+TGG | - | chr5.4:55458030-55458049 | MS.gene88803:intron | 30.0% | |
| AATTCTGTATTTGCCACAAA+GGG | + | chr5.4:55459280-55459299 | None:intergenic | 30.0% | |
| AGAAAATTCCAAAAAGCTAG+TGG | - | chr5.4:55459130-55459149 | MS.gene88803:intron | 30.0% | |
| ATACTCTCTATTCACACAAT+TGG | + | chr5.4:55458165-55458184 | None:intergenic | 30.0% | |
| ATGAAATGATTGTGTGAATG+TGG | + | chr5.4:55458021-55458040 | None:intergenic | 30.0% | |
| CAATAATCAATAGCAATAGC+AGG | + | chr5.4:55461097-55461116 | None:intergenic | 30.0% | |
| CAATAATCAATTGCAATAGC+AGG | + | chr5.4:55457815-55457834 | None:intergenic | 30.0% | |
| CACAATCATTTCATTTGTGA+TGG | - | chr5.4:55458027-55458046 | MS.gene88803:intron | 30.0% | |
| CATCATGTACCAAAAACATT+TGG | - | chr5.4:55457030-55457049 | MS.gene88803:CDS | 30.0% | |
| CTAAGAAAATTTCAACACAC+TGG | - | chr5.4:55460806-55460825 | MS.gene88803:CDS | 30.0% | |
| CTACAACACATTGAATTACT+AGG | + | chr5.4:55460623-55460642 | None:intergenic | 30.0% | |
| CTGCTATTGCAATTGATTAT+TGG | - | chr5.4:55457813-55457832 | MS.gene88803:intron | 30.0% | |
| CTGTTATTACTGCTATTGTT+GGG | + | chr5.4:55456267-55456286 | None:intergenic | 30.0% | |
| GACACTATAGTTAAAATGCA+AGG | - | chr5.4:55461442-55461461 | MS.gene88803:CDS | 30.0% | |
| GATTTATACTTCAAGGTATG+TGG | - | chr5.4:55457099-55457118 | MS.gene88803:intron | 30.0% | |
| GTATTTGGATGATTTCTCAT+AGG | - | chr5.4:55456930-55456949 | MS.gene88803:CDS | 30.0% | |
| TATAATTAGGAATGGGATCA+AGG | - | chr5.4:55459104-55459123 | MS.gene88803:intron | 30.0% | |
| TCATGTACCAAAAACATTTG+CGG | - | chr5.4:55457032-55457051 | MS.gene88803:CDS | 30.0% | |
| TCATGTACCAAAAACATTTG+GGG | - | chr5.4:55457032-55457051 | MS.gene88803:CDS | 30.0% | |
| TGAAAGTTTAGAGACAACAA+AGG | + | chr5.4:55458730-55458749 | None:intergenic | 30.0% | |
| ! | AACTTATCCGCAAATGTTTT+TGG | + | chr5.4:55460122-55460141 | None:intergenic | 30.0% |
| ! | CATGTGGATTTTCATTAGAT+AGG | - | chr5.4:55458345-55458364 | MS.gene88803:CDS | 30.0% |
| ! | CTGCTATTGCTATTGATTAT+TGG | - | chr5.4:55461095-55461114 | MS.gene88803:intron | 30.0% |
| ! | GTTTTCTATGACTCAAATGT+TGG | + | chr5.4:55460321-55460340 | None:intergenic | 30.0% |
| ! | TGTTGTGTTCATCTTTTTGT+AGG | - | chr5.4:55461666-55461685 | MS.gene88803:CDS | 30.0% |
| !! | AAACTTGTTACTAAGGTCAA+CGG | - | chr5.4:55459429-55459448 | MS.gene88803:intron | 30.0% |
| !! | ACATAGGTTTGTTGGTTATT+TGG | - | chr5.4:55460997-55461016 | MS.gene88803:intron | 30.0% |
| !! | CTTAACACTTTAGTTCTTAG+TGG | + | chr5.4:55460578-55460597 | None:intergenic | 30.0% |
| !! | GACTTTTTCCGTGAAAAAAT+CGG | - | chr5.4:55457249-55457268 | MS.gene88803:intron | 30.0% |
| !! | TAGATTTGTTGGTTATTTGG+AGG | - | chr5.4:55457718-55457737 | MS.gene88803:CDS | 30.0% |
| !! | TGTTGTGTTGTTCTTTTTGT+AGG | - | chr5.4:55458588-55458607 | MS.gene88803:intron | 30.0% |
| !!! | TTGACAATCCGATTTTTTCA+CGG | + | chr5.4:55457260-55457279 | None:intergenic | 30.0% |
| AAAACAGCACATAGGTTTGT+TGG | - | chr5.4:55460989-55461008 | MS.gene88803:intron | 35.0% | |
| AAAGAGACACTAACTCTGTT+TGG | - | chr5.4:55456640-55456659 | MS.gene88803:CDS | 35.0% | |
| AAATATAACTGCTGCAGGAA+CGG | - | chr5.4:55460702-55460721 | MS.gene88803:CDS | 35.0% | |
| AACATTCAGAACAAACGAAG+AGG | + | chr5.4:55458572-55458591 | None:intergenic | 35.0% | |
| AACATTCAGAGCAAATGAAG+AGG | + | chr5.4:55461650-55461669 | None:intergenic | 35.0% | |
| ACCGTAAAAAAGTTTCGTAG+AGG | + | chr5.4:55457363-55457382 | None:intergenic | 35.0% | |
| AGAAAATTTCAACACACTGG+TGG | - | chr5.4:55460809-55460828 | MS.gene88803:intron | 35.0% | |
| ATCTCAAAGTTTACGTCAGT+AGG | - | chr5.4:55456596-55456615 | MS.gene88803:intron | 35.0% | |
| ATGACTCAATGATAACCAAC+AGG | + | chr5.4:55458655-55458674 | None:intergenic | 35.0% | |
| ATGAGTTACTTGATCTTGCA+TGG | - | chr5.4:55456903-55456922 | MS.gene88803:CDS | 35.0% | |
| CACCAAACAATTCCTTGATT+GGG | + | chr5.4:55458823-55458842 | None:intergenic | 35.0% | |
| CAGATCTGTCAAGTTTCTAA+GGG | - | chr5.4:55460148-55460167 | MS.gene88803:CDS | 35.0% | |
| CATGCTTTAACTCTGTTTCA+TGG | + | chr5.4:55459734-55459753 | None:intergenic | 35.0% | |
| CATTTACATGCAATTGAGAG+TGG | - | chr5.4:55457767-55457786 | MS.gene88803:intron | 35.0% | |
| CTAAGAAAATTTCAACACGC+TGG | - | chr5.4:55457524-55457543 | MS.gene88803:intron | 35.0% | |
| CTTTCAATTCCTTTCCTTGA+TGG | + | chr5.4:55458621-55458640 | None:intergenic | 35.0% | |
| GCTCTCTGATTTATACTTCA+AGG | - | chr5.4:55457092-55457111 | MS.gene88803:intron | 35.0% | |
| GCTGTTATTACTGCTATTGT+TGG | + | chr5.4:55456268-55456287 | None:intergenic | 35.0% | |
| GTGATGATCATCTATCTACA+GGG | - | chr5.4:55458849-55458868 | MS.gene88803:intron | 35.0% | |
| TAACAACCGGTGAATCAATA+AGG | + | chr5.4:55460439-55460458 | None:intergenic | 35.0% | |
| TAATTACTGCAGGAACGATA+TGG | - | chr5.4:55457425-55457444 | MS.gene88803:intron | 35.0% | |
| TAGAGCTTGTAAAACCAAGT+TGG | - | chr5.4:55460891-55460910 | MS.gene88803:intron | 35.0% | |
| TATGGTCGTTTAATCGAGAT+AGG | + | chr5.4:55458136-55458155 | None:intergenic | 35.0% | |
| TCAAGGAAAAGAACTGAAAG+AGG | - | chr5.4:55461699-55461718 | MS.gene88803:CDS | 35.0% | |
| TCAAGGAAAGGAATTGAAAG+AGG | - | chr5.4:55458621-55458640 | MS.gene88803:intron | 35.0% | |
| TCAGATCTGTCAAGTTTCTA+AGG | - | chr5.4:55457067-55457086 | MS.gene88803:CDS | 35.0% | |
| TCAGATCTGTCAAGTTTCTA+CGG | - | chr5.4:55457067-55457086 | MS.gene88803:CDS | 35.0% | |
| TGAAAATAGTAGCTCAAGAG+TGG | + | chr5.4:55459376-55459395 | None:intergenic | 35.0% | |
| TGATTATTGGAGACTTCCTA+AGG | - | chr5.4:55457826-55457845 | MS.gene88803:intron | 35.0% | |
| TGTTCTCTATATACGATGTC+CGG | - | chr5.4:55460037-55460056 | MS.gene88803:CDS | 35.0% | |
| TTGAAGAAGCAGAGAATGAA+AGG | - | chr5.4:55457567-55457586 | MS.gene88803:intron | 35.0% | |
| TTGTAGGATATTCACCATCA+AGG | - | chr5.4:55458604-55458623 | MS.gene88803:intron | 35.0% | |
| ! | AACTTGTCCCCAAATGTTTT+TGG | + | chr5.4:55457042-55457061 | None:intergenic | 35.0% |
| ! | AAGGATGCATTTGATGACAA+TGG | - | chr5.4:55457586-55457605 | MS.gene88803:intron | 35.0% |
| ! | ATCTGAAATATAACTGCTGC+AGG | - | chr5.4:55460697-55460716 | MS.gene88803:CDS | 35.0% |
| ! | CTTTCAGTTCTTTTCCTTGA+TGG | + | chr5.4:55461699-55461718 | None:intergenic | 35.0% |
| ! | GTACTTACTTGCTACAAAGT+TGG | + | chr5.4:55459174-55459193 | None:intergenic | 35.0% |
| ! | TAAAACCAAGTTGGCATGAA+AGG | - | chr5.4:55460900-55460919 | MS.gene88803:intron | 35.0% |
| ! | TCTTTAAGAGTTGCATCCTT+AGG | + | chr5.4:55457845-55457864 | None:intergenic | 35.0% |
| ! | TGTTCTAGTCAGCATTGAAA+CGG | + | chr5.4:55460498-55460517 | None:intergenic | 35.0% |
| !! | ATCTTGCATGGTGTTGTATT+TGG | - | chr5.4:55456915-55456934 | MS.gene88803:CDS | 35.0% |
| !! | CTTTAGTTCTTAGTGGGAAT+AGG | + | chr5.4:55460571-55460590 | None:intergenic | 35.0% |
| !! | CTTTTGGTTATTACTGCACA+AGG | - | chr5.4:55457641-55457660 | MS.gene88803:CDS | 35.0% |
| !! | CTTTTGGTTATTACTGCTCA+AGG | - | chr5.4:55460923-55460942 | MS.gene88803:intron | 35.0% |
| !! | TAGGTTTGTTGGTTATTTGG+AGG | - | chr5.4:55461000-55461019 | MS.gene88803:intron | 35.0% |
| !! | TTGTTTCTAGCATCATTGCA+TGG | + | chr5.4:55457454-55457473 | None:intergenic | 35.0% |
| !!! | ACAAACCTATGTGCTGTTTT+TGG | + | chr5.4:55460989-55461008 | None:intergenic | 35.0% |
| !!! | GCCTCTACGAAACTTTTTTA+CGG | - | chr5.4:55457359-55457378 | MS.gene88803:intron | 35.0% |
| !!! | TATGTGCTATTTTTGGTGAG+AGG | + | chr5.4:55457700-55457719 | None:intergenic | 35.0% |
| !!! | TGTTTTTGGTACATGATGCT+TGG | + | chr5.4:55457028-55457047 | None:intergenic | 35.0% |
| AAAAATCCGTTGTCCGACTT+TGG | - | chr5.4:55457213-55457232 | MS.gene88803:intron | 40.0% | |
| AAAAGCCTTTCATGCCAACT+TGG | + | chr5.4:55460908-55460927 | None:intergenic | 40.0% | |
| AAAGGGAAGAAGAAAGGTAG+TGG | + | chr5.4:55459263-55459282 | None:intergenic | 40.0% | |
| AATTTCAACACACTGGTGGT+TGG | - | chr5.4:55460813-55460832 | MS.gene88803:intron | 40.0% | |
| AGAAAATTTCAACACGCTGG+TGG | - | chr5.4:55457527-55457546 | MS.gene88803:intron | 40.0% | |
| CACCCAATCAAGGAATTGTT+TGG | - | chr5.4:55458818-55458837 | MS.gene88803:intron | 40.0% | |
| CAGATCTGTCAAGTTTCTAC+GGG | - | chr5.4:55457068-55457087 | MS.gene88803:CDS | 40.0% | |
| CAGTAGGCCTAAGATTCTTA+AGG | - | chr5.4:55456317-55456336 | MS.gene88803:intron | 40.0% | |
| CCAATCAAGGAATTGTTTGG+TGG | - | chr5.4:55458821-55458840 | MS.gene88803:intron | 40.0% | |
| CCACCAAACAATTCCTTGAT+TGG | + | chr5.4:55458824-55458843 | None:intergenic | 40.0% | |
| CCATCCTCCTTAAGAATCTT+AGG | + | chr5.4:55456327-55456346 | None:intergenic | 40.0% | |
| CCTAAGATTCTTAAGGAGGA+TGG | - | chr5.4:55456324-55456343 | MS.gene88803:intron | 40.0% | |
| CTTACCATGAAACAGTTCCA+TGG | + | chr5.4:55459703-55459722 | None:intergenic | 40.0% | |
| GGATATTCACCATCAAGGAA+AGG | - | chr5.4:55458609-55458628 | MS.gene88803:intron | 40.0% | |
| GGTGATGATCATCTATCTAC+AGG | - | chr5.4:55458848-55458867 | MS.gene88803:intron | 40.0% | |
| GTCAACTTTGCCAGAGAAAA+AGG | - | chr5.4:55456212-55456231 | MS.gene88803:intron | 40.0% | |
| TACCTTTCTTCTTCCCTTTG+TGG | - | chr5.4:55459264-55459283 | MS.gene88803:intron | 40.0% | |
| TAGGCCTAAGATTCTTAAGG+AGG | - | chr5.4:55456320-55456339 | MS.gene88803:intron | 40.0% | |
| TCACACAATTGGCGCATATA+TGG | + | chr5.4:55458154-55458173 | None:intergenic | 40.0% | |
| TCACATGAGAAGAAGAGACT+TGG | - | chr5.4:55457322-55457341 | MS.gene88803:intron | 40.0% | |
| TCCTAAGGATGCAACTCTTA+AGG | - | chr5.4:55457841-55457860 | MS.gene88803:intron | 40.0% | |
| TCCTTAAGAGTTGCATCCTT+AGG | + | chr5.4:55461127-55461146 | None:intergenic | 40.0% | |
| TCTCACCAAAAACAGCACAT+AGG | - | chr5.4:55460981-55461000 | MS.gene88803:intron | 40.0% | |
| TCTGAACTGTAACTTTCCCA+TGG | + | chr5.4:55456988-55457007 | None:intergenic | 40.0% | |
| TTGAGCTTGTGAAACCAAGT+TGG | - | chr5.4:55457609-55457628 | MS.gene88803:intron | 40.0% | |
| TTGTTAATCAGCCTCGGTTA+AGG | - | chr5.4:55460453-55460472 | MS.gene88803:intron | 40.0% | |
| ! | AAGGAATTGTTTGGTGGTCT+TGG | - | chr5.4:55458827-55458846 | MS.gene88803:intron | 40.0% |
| ! | AAGTTGGCATGAAAGGCTTT+TGG | - | chr5.4:55460907-55460926 | MS.gene88803:intron | 40.0% |
| ! | ATGATCTTTGTTTGCAGCCA+TGG | - | chr5.4:55456968-55456987 | MS.gene88803:CDS | 40.0% |
| ! | GCACAAGGAGTTTTCTTCAA+TGG | - | chr5.4:55457656-55457675 | MS.gene88803:CDS | 40.0% |
| ! | GTCATGTGACACTTTTCATG+TGG | - | chr5.4:55458329-55458348 | MS.gene88803:CDS | 40.0% |
| ! | TGATCTTTGTTTGCAGCCAT+GGG | - | chr5.4:55456969-55456988 | MS.gene88803:CDS | 40.0% |
| ! | TGTTGGTTATTTGGAGGAAG+AGG | - | chr5.4:55457724-55457743 | MS.gene88803:CDS | 40.0% |
| !! | GTGGTACCTTATTGATTCAC+CGG | - | chr5.4:55460430-55460449 | MS.gene88803:intron | 40.0% |
| !! | TAGAGAGTATTGTCAGTTGC+AGG | - | chr5.4:55458175-55458194 | MS.gene88803:CDS | 40.0% |
| !!! | AAGTCGGACAACGGATTTTT+TGG | + | chr5.4:55457213-55457232 | None:intergenic | 40.0% |
| AAAAGCCTCTCATGCCAACT+TGG | + | chr5.4:55457626-55457645 | None:intergenic | 45.0% | |
| AACCGAGGCTGATTAACAAC+CGG | + | chr5.4:55460452-55460471 | None:intergenic | 45.0% | |
| AATTTCAACACGCTGGTGGT+TGG | - | chr5.4:55457531-55457550 | MS.gene88803:intron | 45.0% | |
| AGTGGAAGGTCTCATCAATG+TGG | + | chr5.4:55459245-55459264 | None:intergenic | 45.0% | |
| AGTTTCGTAGAGGCTGAACT+TGG | + | chr5.4:55457353-55457372 | None:intergenic | 45.0% | |
| CAACTATTCGACCTTAACCG+AGG | + | chr5.4:55460467-55460486 | None:intergenic | 45.0% | |
| CAATGATAACCAACAGGAGC+TGG | + | chr5.4:55458649-55458668 | None:intergenic | 45.0% | |
| CACTAGGCCCAAGGTTAAAA+GGG | - | chr5.4:55459660-55459679 | MS.gene88803:intron | 45.0% | |
| CGGTTAAGGTCGAATAGTTG+AGG | - | chr5.4:55460467-55460486 | MS.gene88803:intron | 45.0% | |
| CTGACCTGGTAATCCAAAGT+CGG | + | chr5.4:55457229-55457248 | None:intergenic | 45.0% | |
| CTTACCATGAAGCAGTTCCA+TGG | + | chr5.4:55456360-55456379 | None:intergenic | 45.0% | |
| GAAAAAGGATCAGCAGACAG+AGG | - | chr5.4:55456227-55456246 | MS.gene88803:intron | 45.0% | |
| GAAAGTCTCTCACCCAATCA+AGG | - | chr5.4:55458808-55458827 | MS.gene88803:intron | 45.0% | |
| GGATGTCAATCACTTTGCGT+CGG | - | chr5.4:55461186-55461205 | MS.gene88803:intron | 45.0% | |
| GGTAATCCAAAGTCGGACAA+CGG | + | chr5.4:55457222-55457241 | None:intergenic | 45.0% | |
| GTCAACTCTGCCAGAGAAAA+AGG | - | chr5.4:55459570-55459589 | MS.gene88803:intron | 45.0% | |
| TATGATGAGCCTCATCAGCA+CGG | + | chr5.4:55457883-55457902 | None:intergenic | 45.0% | |
| TCAATAGCAATAGCAGGAGC+AGG | + | chr5.4:55461091-55461110 | None:intergenic | 45.0% | |
| TCAATTGCAATAGCAGGAGC+AGG | + | chr5.4:55457809-55457828 | None:intergenic | 45.0% | |
| TCACCGCTGTTGAAAAACTG+CGG | + | chr5.4:55456128-55456147 | None:intergenic | 45.0% | |
| TCACTAGGCCCAAGGTTAAA+AGG | - | chr5.4:55459659-55459678 | MS.gene88803:intron | 45.0% | |
| TCTGAGCTGTAACTTTCCCA+TGG | + | chr5.4:55460068-55460087 | None:intergenic | 45.0% | |
| TGATTGGGTGAGAGACTTTC+AGG | + | chr5.4:55458808-55458827 | None:intergenic | 45.0% | |
| TGCCACAAAGGGAAGAAGAA+AGG | + | chr5.4:55459269-55459288 | None:intergenic | 45.0% | |
| TGCCAGAGAAAAAGGATCAG+CGG | - | chr5.4:55456220-55456239 | MS.gene88803:intron | 45.0% | |
| TGCTGATGAGGCTCATCATA+GGG | - | chr5.4:55457883-55457902 | MS.gene88803:intron | 45.0% | |
| TGCTGATGAGGCTCATCATA+TGG | - | chr5.4:55457883-55457902 | MS.gene88803:intron | 45.0% | |
| TTAAGGAGGATGGAACTGAG+TGG | - | chr5.4:55456334-55456353 | MS.gene88803:intron | 45.0% | |
| TTGTCCGACTTTGGATTACC+AGG | - | chr5.4:55457222-55457241 | MS.gene88803:intron | 45.0% | |
| ! | AAGTTGGCATGAGAGGCTTT+TGG | - | chr5.4:55457625-55457644 | MS.gene88803:CDS | 45.0% |
| ! | CACTATTATCCGTGCTGATG+AGG | - | chr5.4:55461153-55461172 | MS.gene88803:intron | 45.0% |
| ! | CCATCCTCCCTTTTAACCTT+GGG | + | chr5.4:55459670-55459689 | None:intergenic | 45.0% |
| ! | GTCTGCTGATCCTTTTTCTC+TGG | + | chr5.4:55456225-55456244 | None:intergenic | 45.0% |
| ! | TCCATCCTCCCTTTTAACCT+TGG | + | chr5.4:55459671-55459690 | None:intergenic | 45.0% |
| ! | TGAAACCAAGTTGGCATGAG+AGG | - | chr5.4:55457618-55457637 | MS.gene88803:CDS | 45.0% |
| !! | AAAAGCATCCCTCCGACTAT+TGG | + | chr5.4:55460773-55460792 | None:intergenic | 45.0% |
| !! | AGGGTTGATGCTTCACAGAA+TGG | - | chr5.4:55458868-55458887 | MS.gene88803:intron | 45.0% |
| !! | GGAAGAAGAAAGGTAGTGGA+AGG | + | chr5.4:55459259-55459278 | None:intergenic | 45.0% |
| !! | TTGTGATGGTGGATCGTGAT+TGG | - | chr5.4:55458041-55458060 | MS.gene88803:intron | 45.0% |
| !!! | GTTAGCAGCCACTAGCTTTT+TGG | + | chr5.4:55459141-55459160 | None:intergenic | 45.0% |
| !!! | GTTTAATATAATTTTTTTTT+TGG | + | chr5.4:55461418-55461437 | None:intergenic | 5.0% |
| !!! | TTTTTATTTATTTATAGTTA+TGG | + | chr5.4:55457153-55457172 | None:intergenic | 5.0% |
| AAAGGGAGGATGGAACTGAG+TGG | - | chr5.4:55459677-55459696 | MS.gene88803:intron | 50.0% | |
| AATAGCAGCTGTCCCTGGAA+TGG | - | chr5.4:55457472-55457491 | MS.gene88803:intron | 50.0% | |
| ATAAACCGCGGTGATAGCTC+TGG | + | chr5.4:55459477-55459496 | None:intergenic | 50.0% | |
| CAGTAATAACAGCAACGCCG+TGG | - | chr5.4:55456275-55456294 | MS.gene88803:intron | 50.0% | |
| CCCAAGGTTAAAAGGGAGGA+TGG | - | chr5.4:55459667-55459686 | MS.gene88803:intron | 50.0% | |
| CGACTTTGGATTACCAGGTC+AGG | - | chr5.4:55457227-55457246 | MS.gene88803:intron | 50.0% | |
| CGGATGTCATGCAATGATGC+TGG | - | chr5.4:55460727-55460746 | MS.gene88803:CDS | 50.0% | |
| GAAAAAGGATCAGCGGTCAG+AGG | - | chr5.4:55459585-55459604 | MS.gene88803:intron | 50.0% | |
| GAAACAATAGCAGCTGTCCC+TGG | - | chr5.4:55457467-55457486 | MS.gene88803:intron | 50.0% | |
| GTGGCCATGGAACTGTTTCA+TGG | - | chr5.4:55459696-55459715 | MS.gene88803:intron | 50.0% | |
| TAACTGCTGCAGGAACGGTA+CGG | - | chr5.4:55460707-55460726 | MS.gene88803:CDS | 50.0% | |
| TAACTTTCCCATGGCTGCAC+CGG | + | chr5.4:55460059-55460078 | None:intergenic | 50.0% | |
| TAGGCCCAAGGTTAAAAGGG+AGG | - | chr5.4:55459663-55459682 | MS.gene88803:intron | 50.0% | |
| TCACCGCGGTTTATCAACTG+CGG | - | chr5.4:55459483-55459502 | MS.gene88803:intron | 50.0% | |
| TCACGGAAAAAGTCCTGACC+TGG | + | chr5.4:55457243-55457262 | None:intergenic | 50.0% | |
| TTCTTAGTGGGAATAGGCGC+AGG | + | chr5.4:55460565-55460584 | None:intergenic | 50.0% | |
| ! | CACCGGTTGTTAATCAGCCT+CGG | - | chr5.4:55460447-55460466 | MS.gene88803:intron | 50.0% |
| ! | CACTGTTATCCGTGCTGATG+AGG | - | chr5.4:55457871-55457890 | MS.gene88803:intron | 50.0% |
| ! | GACCGCTGATCCTTTTTCTC+TGG | + | chr5.4:55459583-55459602 | None:intergenic | 50.0% |
| ! | GTGCTGATGAGGCTCATCAT+AGG | - | chr5.4:55457882-55457901 | MS.gene88803:intron | 50.0% |
| !! | ACACCGTCGTTTCGAGTTAC+TGG | - | chr5.4:55459632-55459651 | MS.gene88803:intron | 50.0% |
| !! | ACCGTCGTTTCGAGTTACTG+GGG | - | chr5.4:55459634-55459653 | MS.gene88803:intron | 50.0% |
| !! | CACCGTCGTTTCGAGTTACT+GGG | - | chr5.4:55459633-55459652 | MS.gene88803:intron | 50.0% |
| !! | CCACCGCAGTTTTTCAACAG+CGG | - | chr5.4:55456122-55456141 | MS.gene88803:intron | 50.0% |
| !! | TCACCGCAGTTGATAAACCG+CGG | + | chr5.4:55459489-55459508 | None:intergenic | 50.0% |
| AAAGAGGCTCCAGCTCCTGT+TGG | - | chr5.4:55458637-55458656 | MS.gene88803:CDS | 55.0% | |
| AGACAACATCAGCATGGCGG+TGG | - | chr5.4:55456159-55456178 | MS.gene88803:intron | 55.0% | |
| AGCATCCCTCCGACTATTGG+CGG | + | chr5.4:55460770-55460789 | None:intergenic | 55.0% | |
| AGGATGGAACTGAGTGGCCA+TGG | - | chr5.4:55456340-55456359 | MS.gene88803:intron | 55.0% | |
| AGTAGCCAGAGCTATCACCG+CGG | - | chr5.4:55459469-55459488 | MS.gene88803:intron | 55.0% | |
| CAGCCGAGACAACATCAGCA+TGG | - | chr5.4:55456153-55456172 | MS.gene88803:intron | 55.0% | |
| CCCCCAGTAACTCGAAACCA+CGG | + | chr5.4:55456295-55456314 | None:intergenic | 55.0% | |
| CCCCCAGTAACTCGAAACGA+CGG | + | chr5.4:55459638-55459657 | None:intergenic | 55.0% | |
| CCGAGACAACATCAGCATGG+CGG | - | chr5.4:55456156-55456175 | MS.gene88803:intron | 55.0% | |
| CCGCCATGCTGATGTTGTCT+CGG | + | chr5.4:55456159-55456178 | None:intergenic | 55.0% | |
| CCGCTGTTGAAAAACTGCGG+TGG | + | chr5.4:55456125-55456144 | None:intergenic | 55.0% | |
| CGAGTTACTGGGGGATCACT+AGG | - | chr5.4:55459644-55459663 | MS.gene88803:intron | 55.0% | |
| CGAGTTACTGGGGGATCAGT+AGG | - | chr5.4:55456301-55456320 | MS.gene88803:intron | 55.0% | |
| GCGCTCTTGGAAGCTTCTAC+TGG | - | chr5.4:55459539-55459558 | MS.gene88803:intron | 55.0% | |
| GGGAATAGGCGCAGGCAATT+TGG | + | chr5.4:55460557-55460576 | None:intergenic | 55.0% | |
| GTGCGTGTGGAAGCTTGTAC+TGG | - | chr5.4:55456181-55456200 | MS.gene88803:intron | 55.0% | |
| GTGGCCATGGAACTGCTTCA+TGG | - | chr5.4:55456353-55456372 | MS.gene88803:intron | 55.0% | |
| GTTCAGCCGAGACACCAGAA+TGG | - | chr5.4:55459511-55459530 | MS.gene88803:intron | 55.0% | |
| ! | GTGGAAGCTTGTACTGGCAG+AGG | - | chr5.4:55456187-55456206 | MS.gene88803:intron | 55.0% |
| !! | ACACGAGCTTTGTTCCGCAG+TGG | - | chr5.4:55456090-55456109 | MS.gene88803:CDS | 55.0% |
| !! | ACGCCGTGGTTTCGAGTTAC+TGG | - | chr5.4:55456289-55456308 | MS.gene88803:intron | 55.0% |
| !! | CCGTCGTTTCGAGTTACTGG+GGG | - | chr5.4:55459635-55459654 | MS.gene88803:intron | 55.0% |
| !! | CCGTGGTTTCGAGTTACTGG+GGG | - | chr5.4:55456292-55456311 | MS.gene88803:intron | 55.0% |
| !! | CGCCGTGGTTTCGAGTTACT+GGG | - | chr5.4:55456290-55456309 | MS.gene88803:intron | 55.0% |
| !! | GAGCTTTGTTCCGCAGTGGT+GGG | - | chr5.4:55456094-55456113 | MS.gene88803:CDS | 55.0% |
| !! | GCCGTGGTTTCGAGTTACTG+GGG | - | chr5.4:55456291-55456310 | MS.gene88803:intron | 55.0% |
| ACGATGTCCGGTGCAGCCAT+GGG | - | chr5.4:55460049-55460068 | MS.gene88803:CDS | 60.0% | |
| AGCAGCTGTCCCTGGAATGG+TGG | - | chr5.4:55457475-55457494 | MS.gene88803:intron | 60.0% | |
| AGCATCCCTCCCACCATTCC+AGG | + | chr5.4:55457488-55457507 | None:intergenic | 60.0% | |
| CAGCCGAGACACCAGAATGG+CGG | - | chr5.4:55459514-55459533 | MS.gene88803:intron | 60.0% | |
| CCACCGCCATTCTGGTGTCT+CGG | + | chr5.4:55459520-55459539 | None:intergenic | 60.0% | |
| GCAGCTGTCCCTGGAATGGT+GGG | - | chr5.4:55457476-55457495 | MS.gene88803:intron | 60.0% | |
| GCATCCCTCCCACCATTCCA+GGG | + | chr5.4:55457487-55457506 | None:intergenic | 60.0% | |
| GCATCCCTCCGACTATTGGC+GGG | + | chr5.4:55460769-55460788 | None:intergenic | 60.0% | |
| GGTGGTAGTTCCCACCACTG+CGG | + | chr5.4:55456107-55456126 | None:intergenic | 60.0% | |
| TACGATGTCCGGTGCAGCCA+TGG | - | chr5.4:55460048-55460067 | MS.gene88803:CDS | 60.0% | |
| ! | CTGTCCCTGGAATGGTGGGA+GGG | - | chr5.4:55457480-55457499 | MS.gene88803:intron | 60.0% |
| !! | CGAGCTTTGTTCCGCAGTGG+TGG | - | chr5.4:55456093-55456112 | MS.gene88803:CDS | 60.0% |
| CAGAATGGCGGTGGCGCTCT+TGG | - | chr5.4:55459526-55459545 | MS.gene88803:intron | 65.0% | |
| CCCTCCGACTATTGGCGGGA+CGG | + | chr5.4:55460765-55460784 | None:intergenic | 65.0% | |
| CCGAGACACCAGAATGGCGG+TGG | - | chr5.4:55459517-55459536 | MS.gene88803:intron | 65.0% | |
| CCGTCCCGCCAATAGTCGGA+GGG | - | chr5.4:55460762-55460781 | MS.gene88803:CDS | 65.0% | |
| CTGGGGGATCACTAGGCCCA+AGG | - | chr5.4:55459651-55459670 | MS.gene88803:intron | 65.0% | |
| GCAGCCGTCCCGCCAATAGT+CGG | - | chr5.4:55460758-55460777 | MS.gene88803:CDS | 65.0% | |
| ! | GCTGTCCCTGGAATGGTGGG+AGG | - | chr5.4:55457479-55457498 | MS.gene88803:intron | 65.0% |
| !! | CAAGAGCGCCACCGCCATTC+TGG | + | chr5.4:55459528-55459547 | None:intergenic | 65.0% |
| CAGCATGGCGGTGGTGCGTG+TGG | - | chr5.4:55456168-55456187 | MS.gene88803:intron | 70.0% | |
| GCCGTCCCGCCAATAGTCGG+AGG | - | chr5.4:55460761-55460780 | MS.gene88803:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 55456063 | 55461747 | 55456063 | ID=MS.gene88803 |
| chr5.4 | mRNA | 55456063 | 55461747 | 55456063 | ID=MS.gene88803.t1;Parent=MS.gene88803 |
| chr5.4 | exon | 55461436 | 55461747 | 55461436 | ID=MS.gene88803.t1.exon1;Parent=MS.gene88803.t1 |
| chr5.4 | CDS | 55461436 | 55461747 | 55461436 | ID=cds.MS.gene88803.t1;Parent=MS.gene88803.t1 |
| chr5.4 | exon | 55460697 | 55460825 | 55460697 | ID=MS.gene88803.t1.exon2;Parent=MS.gene88803.t1 |
| chr5.4 | CDS | 55460697 | 55460825 | 55460697 | ID=cds.MS.gene88803.t1;Parent=MS.gene88803.t1 |
| chr5.4 | exon | 55459885 | 55460373 | 55459885 | ID=MS.gene88803.t1.exon3;Parent=MS.gene88803.t1 |
| chr5.4 | CDS | 55459885 | 55460373 | 55459885 | ID=cds.MS.gene88803.t1;Parent=MS.gene88803.t1 |
| chr5.4 | exon | 55459156 | 55459200 | 55459156 | ID=MS.gene88803.t1.exon4;Parent=MS.gene88803.t1 |
| chr5.4 | CDS | 55459156 | 55459200 | 55459156 | ID=cds.MS.gene88803.t1;Parent=MS.gene88803.t1 |
| chr5.4 | exon | 55458915 | 55459019 | 55458915 | ID=MS.gene88803.t1.exon5;Parent=MS.gene88803.t1 |
| chr5.4 | CDS | 55458915 | 55459019 | 55458915 | ID=cds.MS.gene88803.t1;Parent=MS.gene88803.t1 |
| chr5.4 | exon | 55458625 | 55458697 | 55458625 | ID=MS.gene88803.t1.exon6;Parent=MS.gene88803.t1 |
| chr5.4 | CDS | 55458625 | 55458697 | 55458625 | ID=cds.MS.gene88803.t1;Parent=MS.gene88803.t1 |
| chr5.4 | exon | 55458093 | 55458397 | 55458093 | ID=MS.gene88803.t1.exon7;Parent=MS.gene88803.t1 |
| chr5.4 | CDS | 55458093 | 55458397 | 55458093 | ID=cds.MS.gene88803.t1;Parent=MS.gene88803.t1 |
| chr5.4 | exon | 55457617 | 55457745 | 55457617 | ID=MS.gene88803.t1.exon8;Parent=MS.gene88803.t1 |
| chr5.4 | CDS | 55457617 | 55457745 | 55457617 | ID=cds.MS.gene88803.t1;Parent=MS.gene88803.t1 |
| chr5.4 | exon | 55456603 | 55457091 | 55456603 | ID=MS.gene88803.t1.exon9;Parent=MS.gene88803.t1 |
| chr5.4 | CDS | 55456603 | 55457091 | 55456603 | ID=cds.MS.gene88803.t1;Parent=MS.gene88803.t1 |
| chr5.4 | exon | 55456063 | 55456122 | 55456063 | ID=MS.gene88803.t1.exon10;Parent=MS.gene88803.t1 |
| chr5.4 | CDS | 55456063 | 55456122 | 55456063 | ID=cds.MS.gene88803.t1;Parent=MS.gene88803.t1 |
| Gene Sequence |
| Protein sequence |
