Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88934.t1 | PNY12007.1 | 86.8 | 379 | 46 | 1 | 1 | 375 | 1 | 379 | 2.30E-195 | 691.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88934.t1 | Q8LAH7 | 65.4 | 370 | 122 | 3 | 9 | 376 | 5 | 370 | 1.5e-142 | 507.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88934.t1 | A0A2K3P9Q7 | 86.8 | 379 | 46 | 1 | 1 | 375 | 1 | 379 | 1.7e-195 | 691.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050605 | MS.gene88934 | 0.801021 | 1.10E-48 | -1.69E-46 |
| MS.gene050750 | MS.gene88934 | 0.827369 | 1.62E-54 | -1.69E-46 |
| MS.gene050953 | MS.gene88934 | 0.825327 | 4.98E-54 | -1.69E-46 |
| MS.gene051368 | MS.gene88934 | 0.827534 | 1.48E-54 | -1.69E-46 |
| MS.gene052333 | MS.gene88934 | 0.845897 | 3.05E-59 | -1.69E-46 |
| MS.gene054405 | MS.gene88934 | 0.826505 | 2.61E-54 | -1.69E-46 |
| MS.gene055367 | MS.gene88934 | 0.830012 | 3.73E-55 | -1.69E-46 |
| MS.gene055701 | MS.gene88934 | 0.859638 | 3.60E-63 | -1.69E-46 |
| MS.gene056506 | MS.gene88934 | 0.80538 | 1.37E-49 | -1.69E-46 |
| MS.gene059609 | MS.gene88934 | 0.82265 | 2.11E-53 | -1.69E-46 |
| MS.gene060011 | MS.gene88934 | 0.819718 | 1.00E-52 | -1.69E-46 |
| MS.gene061114 | MS.gene88934 | -0.808958 | 2.40E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88934.t1 | MTR_3g115600 | 75.946 | 370 | 83 | 3 | 7 | 376 | 1 | 364 | 0.0 | 591 |
| MS.gene88934.t1 | MTR_5g006800 | 67.213 | 366 | 118 | 2 | 10 | 375 | 6 | 369 | 0.0 | 525 |
| MS.gene88934.t1 | MTR_5g006710 | 66.942 | 363 | 112 | 4 | 13 | 375 | 9 | 363 | 0.0 | 506 |
| MS.gene88934.t1 | MTR_5g006750 | 65.110 | 364 | 123 | 3 | 14 | 375 | 10 | 371 | 1.58e-178 | 501 |
| MS.gene88934.t1 | MTR_5g006780 | 66.209 | 364 | 119 | 3 | 14 | 375 | 10 | 371 | 2.41e-177 | 498 |
| MS.gene88934.t1 | MTR_5g006740 | 65.470 | 362 | 123 | 2 | 14 | 375 | 6 | 365 | 4.10e-177 | 497 |
| MS.gene88934.t1 | MTR_5g006670 | 65.746 | 362 | 116 | 4 | 14 | 375 | 6 | 359 | 2.15e-176 | 495 |
| MS.gene88934.t1 | MTR_5g008040 | 60.916 | 371 | 140 | 3 | 4 | 374 | 5 | 370 | 2.64e-168 | 475 |
| MS.gene88934.t1 | MTR_5g006740 | 62.431 | 362 | 117 | 3 | 14 | 375 | 6 | 348 | 6.92e-162 | 457 |
| MS.gene88934.t1 | MTR_5g006720 | 57.068 | 382 | 122 | 4 | 5 | 375 | 2 | 352 | 1.84e-151 | 431 |
| MS.gene88934.t1 | MTR_4g125470 | 52.022 | 371 | 165 | 4 | 16 | 374 | 19 | 388 | 6.00e-135 | 391 |
| MS.gene88934.t1 | MTR_5g006730 | 75.926 | 108 | 26 | 0 | 14 | 121 | 10 | 117 | 1.77e-55 | 179 |
| MS.gene88934.t1 | MTR_3g096570 | 64.557 | 79 | 24 | 2 | 175 | 252 | 3 | 78 | 3.98e-26 | 105 |
| MS.gene88934.t1 | MTR_3g096562 | 58.333 | 84 | 32 | 1 | 169 | 252 | 162 | 242 | 5.53e-25 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88934.t1 | AT1G76690 | 64.171 | 374 | 128 | 3 | 6 | 377 | 4 | 373 | 0.0 | 508 |
| MS.gene88934.t1 | AT1G76680 | 65.229 | 371 | 123 | 3 | 9 | 377 | 5 | 371 | 0.0 | 508 |
| MS.gene88934.t1 | AT1G76680 | 61.111 | 396 | 123 | 4 | 9 | 377 | 5 | 396 | 2.54e-175 | 494 |
| MS.gene88934.t1 | AT1G09400 | 64.134 | 329 | 107 | 3 | 22 | 348 | 1 | 320 | 1.21e-156 | 443 |
| MS.gene88934.t1 | AT1G09400 | 65.056 | 269 | 83 | 3 | 82 | 348 | 2 | 261 | 1.55e-127 | 367 |
| MS.gene88934.t1 | AT2G06050 | 48.819 | 381 | 178 | 5 | 10 | 374 | 6 | 385 | 1.21e-125 | 367 |
| MS.gene88934.t1 | AT2G06050 | 48.819 | 381 | 178 | 5 | 10 | 374 | 6 | 385 | 1.21e-125 | 367 |
| MS.gene88934.t1 | AT2G06050 | 48.819 | 381 | 178 | 5 | 10 | 374 | 6 | 385 | 1.21e-125 | 367 |
| MS.gene88934.t1 | AT1G17990 | 58.781 | 279 | 102 | 4 | 8 | 285 | 1 | 267 | 4.28e-119 | 346 |
| MS.gene88934.t1 | AT1G18020 | 58.781 | 279 | 102 | 4 | 8 | 285 | 1 | 267 | 4.28e-119 | 346 |
| MS.gene88934.t1 | AT1G17990 | 56.272 | 279 | 101 | 5 | 8 | 285 | 1 | 259 | 1.43e-110 | 324 |
Find 107 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGATAGTACTAGTTATTT+TGG | 0.113729 | 1.3:-51205 | None:intergenic |
| GTCCAAATACCAGGCGTATT+TGG | 0.126815 | 1.3:-50203 | None:intergenic |
| ATACACACACGTACCATATT+TGG | 0.213055 | 1.3:-50321 | None:intergenic |
| ACCCAAATACGCCTGGTATT+TGG | 0.232167 | 1.3:+50201 | MS.gene88934:CDS |
| CCTTTGAACACCTTCCTAAT+AGG | 0.291774 | 1.3:-50969 | None:intergenic |
| AATGGTCCTTGATGCCTATT+AGG | 0.301603 | 1.3:+50955 | MS.gene88934:CDS |
| GCTGCTGATCTAGTGGCTTA+TGG | 0.307172 | 1.3:+51053 | MS.gene88934:CDS |
| GGCTGAATCATTGAATCAAT+TGG | 0.309770 | 1.3:+50866 | MS.gene88934:CDS |
| TCCAAATACCAGGCGTATTT+GGG | 0.322139 | 1.3:-50202 | None:intergenic |
| AAAGGGACATTTATTGTTGC+TGG | 0.324243 | 1.3:+50987 | MS.gene88934:CDS |
| GACAGGATCATGCGTATAAA+AGG | 0.327954 | 1.3:-51156 | None:intergenic |
| GGATTTCATTTGTGCTTAAT+CGG | 0.331257 | 1.3:-50548 | None:intergenic |
| ACTAAGGGTGGCTTCTTGAT+TGG | 0.336328 | 1.3:+49830 | MS.gene88934:CDS |
| GGCTTGTTTGTGCATGATAT+TGG | 0.338072 | 1.3:-50468 | None:intergenic |
| GTGCGCCAAGTTCATGAAAA+AGG | 0.339105 | 1.3:+50257 | MS.gene88934:CDS |
| CTAAGGGTGGCTTCTTGATT+GGG | 0.342918 | 1.3:+49831 | MS.gene88934:CDS |
| TATGACCTTGATCGCGTTAA+CGG | 0.364577 | 1.3:-49758 | None:intergenic |
| TTAAAGTTTCCCATCTTGTA+TGG | 0.364982 | 1.3:-49591 | None:intergenic |
| GACTCTGATCCTCAAGTATT+GGG | 0.377448 | 1.3:+50834 | MS.gene88934:CDS |
| CCATCTTGTATGGGGTGAGC+AGG | 0.381597 | 1.3:-49581 | None:intergenic |
| TTGTTGCTGGAGGTTATGAT+AGG | 0.394121 | 1.3:+51000 | MS.gene88934:CDS |
| ATTAGCTGCAGCAGGATCAT+TGG | 0.397402 | 1.3:-50508 | None:intergenic |
| TTAAATTGTGTAACCATCCT+TGG | 0.400376 | 1.3:-50915 | None:intergenic |
| TCATGAACTTGGCGCACAAT+TGG | 0.406981 | 1.3:-50251 | None:intergenic |
| ACCATATTTGGATACTCTTC+CGG | 0.408173 | 1.3:-50309 | None:intergenic |
| GATATTGGAGGTTTACCTTC+AGG | 0.416474 | 1.3:-50453 | None:intergenic |
| TTCTTGATTGGGGAAGCATC+TGG | 0.424746 | 1.3:+49842 | MS.gene88934:CDS |
| GTATAAAAGGTAGTTGGATC+AGG | 0.427027 | 1.3:-51143 | None:intergenic |
| CTTGCTTGATCAATTTCTAA+AGG | 0.427817 | 1.3:+50659 | MS.gene88934:CDS |
| AACGACAGAGATGACGAGTA+TGG | 0.432506 | 1.3:+50690 | MS.gene88934:CDS |
| GCCGGAAGAGTATCCAAATA+TGG | 0.433682 | 1.3:+50308 | MS.gene88934:CDS |
| TATACGCATGATCCTGTCCT+TGG | 0.445992 | 1.3:+51161 | MS.gene88934:CDS |
| AATAGGCATCAAGGACCATT+TGG | 0.455116 | 1.3:-50952 | None:intergenic |
| TGGTATTTGGACAAGGGAAC+AGG | 0.457024 | 1.3:+50214 | MS.gene88934:CDS |
| CATCTTGTATGGGGTGAGCA+GGG | 0.471532 | 1.3:-49580 | None:intergenic |
| TTATTCTCAAAGATCAACTA+AGG | 0.473661 | 1.3:+49814 | MS.gene88934:CDS |
| GCTGAATCATTGAATCAATT+GGG | 0.474970 | 1.3:+50867 | MS.gene88934:CDS |
| AGAGATAGAAGGATGACTAA+AGG | 0.476048 | 1.3:+49525 | None:intergenic |
| GCAAGAAATGCCATGGAAGC+AGG | 0.479264 | 1.3:+50600 | MS.gene88934:CDS |
| GTAGAGATACATGGAGCTAA+TGG | 0.479754 | 1.3:+50633 | MS.gene88934:CDS |
| GTGCTTAATCGGCGAGGAGG+TGG | 0.494140 | 1.3:-50537 | None:intergenic |
| TTGGACAAGGGAACAGGTAG+AGG | 0.495054 | 1.3:+50220 | MS.gene88934:CDS |
| TAAAGTTTCCCATCTTGTAT+GGG | 0.501559 | 1.3:-49590 | None:intergenic |
| TATGATAGGAGTGAAGGAAA+TGG | 0.503378 | 1.3:+51014 | MS.gene88934:CDS |
| AGACTCTGATCCTCAAGTAT+TGG | 0.505390 | 1.3:+50833 | MS.gene88934:CDS |
| TCCATCAAAACCTGCTTCCA+TGG | 0.506298 | 1.3:-50610 | None:intergenic |
| TCAAGTATTGGGTATTTACA+TGG | 0.517434 | 1.3:+50845 | MS.gene88934:CDS |
| CCTGCTCACCCCATACAAGA+TGG | 0.518048 | 1.3:+49581 | MS.gene88934:CDS |
| GGATATTGATTAGCTGCAGC+AGG | 0.526559 | 1.3:-50516 | None:intergenic |
| CTTCCCACTTCGAGTGGTGA+AGG | 0.529500 | 1.3:+50737 | MS.gene88934:CDS |
| TTGGAGGTTTACCTTCAGGC+TGG | 0.534090 | 1.3:-50449 | None:intergenic |
| CCTATTAGGAAGGTGTTCAA+AGG | 0.534129 | 1.3:+50969 | MS.gene88934:CDS |
| TTAATACGACAGGATAGTGT+TGG | 0.537539 | 1.3:+49733 | MS.gene88934:intron |
| CACCTTCCTAATAGGCATCA+AGG | 0.537835 | 1.3:-50961 | None:intergenic |
| TTGGAGATATCTTTCTGAAG+AGG | 0.538385 | 1.3:-50489 | None:intergenic |
| TTGTTTGTGCATGATATTGG+AGG | 0.543879 | 1.3:-50465 | None:intergenic |
| AAAAGGTACCCAAATACGCC+TGG | 0.544881 | 1.3:+50194 | MS.gene88934:intron |
| CTATTAGGAAGGTGTTCAAA+GGG | 0.545620 | 1.3:+50970 | MS.gene88934:CDS |
| TCATGCGTATAAAAGGTAGT+TGG | 0.551693 | 1.3:-51149 | None:intergenic |
| ATCTTGTATGGGGTGAGCAG+GGG | 0.554437 | 1.3:-49579 | None:intergenic |
| TTTGATGGAGTAGAGATACA+TGG | 0.555461 | 1.3:+50624 | MS.gene88934:CDS |
| TTCTGTCAACTTTGGCACGC+CGG | 0.558422 | 1.3:+50290 | MS.gene88934:CDS |
| ATGTGGTGCTGCTGATCTAG+TGG | 0.559206 | 1.3:+51046 | MS.gene88934:CDS |
| ACAAGTGTGACACCACCAAA+TGG | 0.560123 | 1.3:+50937 | MS.gene88934:CDS |
| TGTTCCCTTGTCCAAATACC+AGG | 0.563761 | 1.3:-50212 | None:intergenic |
| TGGCGCCGTTAACGCGATCA+AGG | 0.570814 | 1.3:+49753 | MS.gene88934:CDS |
| GATGACTAAAGGAGAAGTAA+TGG | 0.579090 | 1.3:+49536 | None:intergenic |
| TAAGGGTGGCTTCTTGATTG+GGG | 0.580264 | 1.3:+49832 | MS.gene88934:CDS |
| GTCCTTGATGCCTATTAGGA+AGG | 0.582773 | 1.3:+50959 | MS.gene88934:CDS |
| ATGGATAATCACTATATCCA+AGG | 0.584629 | 1.3:-51178 | None:intergenic |
| TAATCACTATATCCAAGGAC+AGG | 0.584850 | 1.3:-51173 | None:intergenic |
| CTGCTCACCCCATACAAGAT+GGG | 0.585227 | 1.3:+49582 | MS.gene88934:CDS |
| AAAGTTTCCCATCTTGTATG+GGG | 0.586684 | 1.3:-49589 | None:intergenic |
| GAAACTTTAATCTATCTCAC+AGG | 0.587121 | 1.3:+49604 | MS.gene88934:CDS |
| AATTGCTGCAAGAAATGCCA+TGG | 0.589036 | 1.3:+50593 | MS.gene88934:CDS |
| AAAGGAGAAGTAATGGTCGA+TGG | 0.589838 | 1.3:+49543 | MS.gene88934:CDS |
| GGAGGTTATGATAGGAGTGA+AGG | 0.591271 | 1.3:+51008 | MS.gene88934:CDS |
| TCTCAAAGATCAACTAAGGG+TGG | 0.594762 | 1.3:+49818 | MS.gene88934:CDS |
| TTGTCGCTTCCCACTTCGAG+TGG | 0.596275 | 1.3:+50731 | MS.gene88934:CDS |
| ACTGCCTTCACCACTCGAAG+TGG | 0.598555 | 1.3:-50741 | None:intergenic |
| TGAAGTCATTGACAAGCATG+TGG | 0.600270 | 1.3:-50569 | None:intergenic |
| GGGACATTTATTGTTGCTGG+AGG | 0.600926 | 1.3:+50990 | MS.gene88934:CDS |
| AAGGCAGTAGCTGATGAGAT+CGG | 0.601265 | 1.3:+50756 | MS.gene88934:CDS |
| AGGCATCAAGGACCATTTGG+TGG | 0.602094 | 1.3:-50949 | None:intergenic |
| ATACGCCTGGTATTTGGACA+AGG | 0.612701 | 1.3:+50207 | MS.gene88934:CDS |
| TGATGAGATCGGAGCTGACA+AGG | 0.615859 | 1.3:+50767 | MS.gene88934:CDS |
| TATAAAAGGTAGTTGGATCA+GGG | 0.616334 | 1.3:-51142 | None:intergenic |
| CAAGGGAACAGGTAGAGGCA+TGG | 0.618836 | 1.3:+50225 | MS.gene88934:CDS |
| TCATATGATTGAGCCAAGGA+TGG | 0.619695 | 1.3:+50902 | MS.gene88934:CDS |
| GGTGTGTCTAACACAGCACA+AGG | 0.629575 | 1.3:+49863 | MS.gene88934:CDS |
| ATGTAAATACCCAATACTTG+AGG | 0.640485 | 1.3:-50843 | None:intergenic |
| TTTGTGCTTAATCGGCGAGG+AGG | 0.648362 | 1.3:-50540 | None:intergenic |
| TATTCTCAAAGATCAACTAA+GGG | 0.648427 | 1.3:+49815 | MS.gene88934:CDS |
| GATGTAGTATACCAGCCTGA+AGG | 0.656347 | 1.3:+50438 | MS.gene88934:intron |
| AAAAGGTAGTTGGATCAGGG+TGG | 0.658195 | 1.3:-51139 | None:intergenic |
| CTGCCTTCACCACTCGAAGT+GGG | 0.659608 | 1.3:-50740 | None:intergenic |
| GAGATCGGAGCTGACAAGGT+TGG | 0.665946 | 1.3:+50771 | MS.gene88934:CDS |
| TCATTTGTGCTTAATCGGCG+AGG | 0.670046 | 1.3:-50543 | None:intergenic |
| CAATCATTATAATCAGCGAA+AGG | 0.671533 | 1.3:-50807 | None:intergenic |
| GAATAATATGAAACAGCATG+AGG | 0.679009 | 1.3:-49797 | None:intergenic |
| TACGCCTGGTATTTGGACAA+GGG | 0.685498 | 1.3:+50208 | MS.gene88934:CDS |
| GACAGAGATGACGAGTATGG+AGG | 0.692429 | 1.3:+50693 | MS.gene88934:CDS |
| TAAAAGATTTGAACTCAACG+TGG | 0.709690 | 1.3:+51106 | MS.gene88934:CDS |
| GAGCTGACAAGGTTGGTGTG+AGG | 0.727383 | 1.3:+50778 | MS.gene88934:CDS |
| ACTGTCATATGATTGAGCCA+AGG | 0.734502 | 1.3:+50898 | MS.gene88934:CDS |
| GGAAATGGTGCTATAGCATG+TGG | 0.744862 | 1.3:+51029 | MS.gene88934:CDS |
| GTGTGTCTAACACAGCACAA+GGG | 0.755183 | 1.3:+49864 | MS.gene88934:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATGATTAATAAAATTAC+CGG | - | chr1.3:49954-49973 | None:intergenic | 10.0% |
| !! | TAATAATATACACATATAAT+TGG | + | chr1.3:50416-50435 | MS.gene88934:intron | 10.0% |
| !! | AATTTATAAATTAATTCGAC+CGG | + | chr1.3:49932-49951 | MS.gene88934:intron | 15.0% |
| !!! | TTAATTTAATTTAATACGAC+AGG | + | chr1.3:49723-49742 | MS.gene88934:intron | 15.0% |
| !! | ATGAAATAAAATCCTTGTAA+TGG | - | chr1.3:50354-50373 | None:intergenic | 20.0% |
| !! | TGAAATAAAATCCTTGTAAT+GGG | - | chr1.3:50353-50372 | None:intergenic | 20.0% |
| !! | TTGATGAGTGAAAAAATTAA+TGG | + | chr1.3:50085-50104 | MS.gene88934:intron | 20.0% |
| ! | AAACAACGCCAAAATTAATT+GGG | + | chr1.3:50050-50069 | MS.gene88934:intron | 25.0% |
| ! | AACATGGATGATCAAATAAA+AGG | + | chr1.3:50177-50196 | MS.gene88934:intron | 25.0% |
| ! | TATTCTCAAAGATCAACTAA+GGG | + | chr1.3:49815-49834 | MS.gene88934:CDS | 25.0% |
| ! | TGTATATTTATCCCATTACA+AGG | + | chr1.3:50339-50358 | MS.gene88934:intron | 25.0% |
| ! | TTATTCTCAAAGATCAACTA+AGG | + | chr1.3:49814-49833 | MS.gene88934:CDS | 25.0% |
| !!! | ATTTTTTCACTCATCAACAA+TGG | - | chr1.3:50082-50101 | None:intergenic | 25.0% |
| !!! | TGTGTGTGTTTTTTTCTTTT+TGG | + | chr1.3:49675-49694 | MS.gene88934:intron | 25.0% |
| ATGGATAATCACTATATCCA+AGG | - | chr1.3:51181-51200 | None:intergenic | 30.0% | |
| ATGTAAATACCCAATACTTG+AGG | - | chr1.3:50846-50865 | None:intergenic | 30.0% | |
| CAAACAACGCCAAAATTAAT+TGG | + | chr1.3:50049-50068 | MS.gene88934:intron | 30.0% | |
| CAATCATTATAATCAGCGAA+AGG | - | chr1.3:50810-50829 | None:intergenic | 30.0% | |
| CCAAAGTTGACAGAAAAATA+TGG | - | chr1.3:50285-50304 | None:intergenic | 30.0% | |
| CTTGCTTGATCAATTTCTAA+AGG | + | chr1.3:50659-50678 | MS.gene88934:CDS | 30.0% | |
| GAAACTTTAATCTATCTCAC+AGG | + | chr1.3:49604-49623 | MS.gene88934:CDS | 30.0% | |
| GAATAATATGAAACAGCATG+AGG | - | chr1.3:49800-49819 | None:intergenic | 30.0% | |
| GAGTGAAAAAATTAATGGAG+CGG | + | chr1.3:50090-50109 | MS.gene88934:intron | 30.0% | |
| GCTGAATCATTGAATCAATT+GGG | + | chr1.3:50867-50886 | MS.gene88934:CDS | 30.0% | |
| GGATTTCATTTGTGCTTAAT+CGG | - | chr1.3:50551-50570 | None:intergenic | 30.0% | |
| TAAAAGATTTGAACTCAACG+TGG | + | chr1.3:51106-51125 | MS.gene88934:CDS | 30.0% | |
| TAAAGTTTCCCATCTTGTAT+GGG | - | chr1.3:49593-49612 | None:intergenic | 30.0% | |
| TATAAAAGGTAGTTGGATCA+GGG | - | chr1.3:51145-51164 | None:intergenic | 30.0% | |
| TTAAAGTTTCCCATCTTGTA+TGG | - | chr1.3:49594-49613 | None:intergenic | 30.0% | |
| TTAAATTGTGTAACCATCCT+TGG | - | chr1.3:50918-50937 | None:intergenic | 30.0% | |
| ! | ACGTTGAGTTCAAATCTTTT+AGG | - | chr1.3:51107-51126 | None:intergenic | 30.0% |
| ! | CCATATTTTTCTGTCAACTT+TGG | + | chr1.3:50282-50301 | MS.gene88934:CDS | 30.0% |
| ! | GGAATTTGCCCAATTAATTT+TGG | - | chr1.3:50061-50080 | None:intergenic | 30.0% |
| !! | AAAATTAATGGAGCGGATTT+TGG | + | chr1.3:50097-50116 | MS.gene88934:intron | 30.0% |
| !! | CAATTAATTTTGGCGTTGTT+TGG | - | chr1.3:50051-50070 | None:intergenic | 30.0% |
| !! | TCAAATCTTTTAGGAAGATC+TGG | - | chr1.3:51098-51117 | None:intergenic | 30.0% |
| !! | TCAAGTATTGGGTATTTACA+TGG | + | chr1.3:50845-50864 | MS.gene88934:CDS | 30.0% |
| !!! | ACGAGAATGCTTTTTTAACA+TGG | + | chr1.3:50161-50180 | MS.gene88934:intron | 30.0% |
| AAAGGGACATTTATTGTTGC+TGG | + | chr1.3:50987-51006 | MS.gene88934:CDS | 35.0% | |
| AAAGTTTCCCATCTTGTATG+GGG | - | chr1.3:49592-49611 | None:intergenic | 35.0% | |
| ACCATATTTGGATACTCTTC+CGG | - | chr1.3:50312-50331 | None:intergenic | 35.0% | |
| ATACACACACGTACCATATT+TGG | - | chr1.3:50324-50343 | None:intergenic | 35.0% | |
| GGCTGAATCATTGAATCAAT+TGG | + | chr1.3:50866-50885 | MS.gene88934:CDS | 35.0% | |
| GTATAAAAGGTAGTTGGATC+AGG | - | chr1.3:51146-51165 | None:intergenic | 35.0% | |
| TAATCACTATATCCAAGGAC+AGG | - | chr1.3:51176-51195 | None:intergenic | 35.0% | |
| TATGATAGGAGTGAAGGAAA+TGG | + | chr1.3:51014-51033 | MS.gene88934:CDS | 35.0% | |
| TCATGCGTATAAAAGGTAGT+TGG | - | chr1.3:51152-51171 | None:intergenic | 35.0% | |
| TTAATACGACAGGATAGTGT+TGG | + | chr1.3:49733-49752 | MS.gene88934:intron | 35.0% | |
| TTGTTTGTGCATGATATTGG+AGG | - | chr1.3:50468-50487 | None:intergenic | 35.0% | |
| TTTGATGGAGTAGAGATACA+TGG | + | chr1.3:50624-50643 | MS.gene88934:CDS | 35.0% | |
| ! | TTGGAGATATCTTTCTGAAG+AGG | - | chr1.3:50492-50511 | None:intergenic | 35.0% |
| !! | CTATTAGGAAGGTGTTCAAA+GGG | + | chr1.3:50970-50989 | MS.gene88934:CDS | 35.0% |
| AAAGGAGAAGTAATGGTCGA+TGG | + | chr1.3:49543-49562 | MS.gene88934:CDS | 40.0% | |
| AATAGGCATCAAGGACCATT+TGG | - | chr1.3:50955-50974 | None:intergenic | 40.0% | |
| AATGGTCCTTGATGCCTATT+AGG | + | chr1.3:50955-50974 | MS.gene88934:CDS | 40.0% | |
| AATTGCTGCAAGAAATGCCA+TGG | + | chr1.3:50593-50612 | MS.gene88934:CDS | 40.0% | |
| ACTGTCATATGATTGAGCCA+AGG | + | chr1.3:50898-50917 | MS.gene88934:CDS | 40.0% | |
| AGACTCTGATCCTCAAGTAT+TGG | + | chr1.3:50833-50852 | MS.gene88934:CDS | 40.0% | |
| CCTTTGAACACCTTCCTAAT+AGG | - | chr1.3:50972-50991 | None:intergenic | 40.0% | |
| GACAGGATCATGCGTATAAA+AGG | - | chr1.3:51159-51178 | None:intergenic | 40.0% | |
| GACTCTGATCCTCAAGTATT+GGG | + | chr1.3:50834-50853 | MS.gene88934:CDS | 40.0% | |
| GATATTGGAGGTTTACCTTC+AGG | - | chr1.3:50456-50475 | None:intergenic | 40.0% | |
| GTAGAGATACATGGAGCTAA+TGG | + | chr1.3:50633-50652 | MS.gene88934:CDS | 40.0% | |
| TATGACCTTGATCGCGTTAA+CGG | - | chr1.3:49761-49780 | None:intergenic | 40.0% | |
| TCATATGATTGAGCCAAGGA+TGG | + | chr1.3:50902-50921 | MS.gene88934:CDS | 40.0% | |
| TCCAAATACCAGGCGTATTT+GGG | - | chr1.3:50205-50224 | None:intergenic | 40.0% | |
| TCTCAAAGATCAACTAAGGG+TGG | + | chr1.3:49818-49837 | MS.gene88934:CDS | 40.0% | |
| TGAAGTCATTGACAAGCATG+TGG | - | chr1.3:50572-50591 | None:intergenic | 40.0% | |
| TTGTTGCTGGAGGTTATGAT+AGG | + | chr1.3:51000-51019 | MS.gene88934:CDS | 40.0% | |
| ! | GGCTTGTTTGTGCATGATAT+TGG | - | chr1.3:50471-50490 | None:intergenic | 40.0% |
| !! | CCTATTAGGAAGGTGTTCAA+AGG | + | chr1.3:50969-50988 | MS.gene88934:CDS | 40.0% |
| !! | TGGCTCCTTTTTCATGAACT+TGG | - | chr1.3:50265-50284 | None:intergenic | 40.0% |
| AAAAGGTAGTTGGATCAGGG+TGG | - | chr1.3:51142-51161 | None:intergenic | 45.0% | |
| AACGACAGAGATGACGAGTA+TGG | + | chr1.3:50690-50709 | MS.gene88934:CDS | 45.0% | |
| AAGGCAGTAGCTGATGAGAT+CGG | + | chr1.3:50756-50775 | MS.gene88934:CDS | 45.0% | |
| ACAAGTGTGACACCACCAAA+TGG | + | chr1.3:50937-50956 | MS.gene88934:CDS | 45.0% | |
| ACCCAAATACGCCTGGTATT+TGG | + | chr1.3:50201-50220 | MS.gene88934:CDS | 45.0% | |
| ACTAAGGGTGGCTTCTTGAT+TGG | + | chr1.3:49830-49849 | MS.gene88934:CDS | 45.0% | |
| ATACGCCTGGTATTTGGACA+AGG | + | chr1.3:50207-50226 | MS.gene88934:CDS | 45.0% | |
| ATTAGCTGCAGCAGGATCAT+TGG | - | chr1.3:50511-50530 | None:intergenic | 45.0% | |
| CACCTTCCTAATAGGCATCA+AGG | - | chr1.3:50964-50983 | None:intergenic | 45.0% | |
| CTAAGGGTGGCTTCTTGATT+GGG | + | chr1.3:49831-49850 | MS.gene88934:CDS | 45.0% | |
| GATGTAGTATACCAGCCTGA+AGG | + | chr1.3:50438-50457 | MS.gene88934:intron | 45.0% | |
| GGAGGTTATGATAGGAGTGA+AGG | + | chr1.3:51008-51027 | MS.gene88934:CDS | 45.0% | |
| GGGACATTTATTGTTGCTGG+AGG | + | chr1.3:50990-51009 | MS.gene88934:CDS | 45.0% | |
| GTCCAAATACCAGGCGTATT+TGG | - | chr1.3:50206-50225 | None:intergenic | 45.0% | |
| GTCCTTGATGCCTATTAGGA+AGG | + | chr1.3:50959-50978 | MS.gene88934:CDS | 45.0% | |
| GTGCGCCAAGTTCATGAAAA+AGG | + | chr1.3:50257-50276 | MS.gene88934:CDS | 45.0% | |
| GTGTGTCTAACACAGCACAA+GGG | + | chr1.3:49864-49883 | MS.gene88934:CDS | 45.0% | |
| TAAGGGTGGCTTCTTGATTG+GGG | + | chr1.3:49832-49851 | MS.gene88934:CDS | 45.0% | |
| TACGCCTGGTATTTGGACAA+GGG | + | chr1.3:50208-50227 | MS.gene88934:CDS | 45.0% | |
| TATACGCATGATCCTGTCCT+TGG | + | chr1.3:51161-51180 | MS.gene88934:CDS | 45.0% | |
| TCATGAACTTGGCGCACAAT+TGG | - | chr1.3:50254-50273 | None:intergenic | 45.0% | |
| TCATTTGTGCTTAATCGGCG+AGG | - | chr1.3:50546-50565 | None:intergenic | 45.0% | |
| TCCATCAAAACCTGCTTCCA+TGG | - | chr1.3:50613-50632 | None:intergenic | 45.0% | |
| TGGTATTTGGACAAGGGAAC+AGG | + | chr1.3:50214-50233 | MS.gene88934:CDS | 45.0% | |
| TGTTCCCTTGTCCAAATACC+AGG | - | chr1.3:50215-50234 | None:intergenic | 45.0% | |
| ! | GGATATTGATTAGCTGCAGC+AGG | - | chr1.3:50519-50538 | None:intergenic | 45.0% |
| ! | GGCTTATGGACGTCTCTTTT+TGG | + | chr1.3:51067-51086 | MS.gene88934:CDS | 45.0% |
| !! | AAAAGGTACCCAAATACGCC+TGG | + | chr1.3:50194-50213 | MS.gene88934:intron | 45.0% |
| !! | GCCGGAAGAGTATCCAAATA+TGG | + | chr1.3:50308-50327 | MS.gene88934:CDS | 45.0% |
| !! | GGAAATGGTGCTATAGCATG+TGG | + | chr1.3:51029-51048 | MS.gene88934:CDS | 45.0% |
| !! | TTCTTGATTGGGGAAGCATC+TGG | + | chr1.3:49842-49861 | MS.gene88934:CDS | 45.0% |
| AGGCATCAAGGACCATTTGG+TGG | - | chr1.3:50952-50971 | None:intergenic | 50.0% | |
| ATCTTGTATGGGGTGAGCAG+GGG | - | chr1.3:49582-49601 | None:intergenic | 50.0% | |
| CATCTTGTATGGGGTGAGCA+GGG | - | chr1.3:49583-49602 | None:intergenic | 50.0% | |
| CTGCTCACCCCATACAAGAT+GGG | + | chr1.3:49582-49601 | MS.gene88934:CDS | 50.0% | |
| GACAGAGATGACGAGTATGG+AGG | + | chr1.3:50693-50712 | MS.gene88934:CDS | 50.0% | |
| GCAAGAAATGCCATGGAAGC+AGG | + | chr1.3:50600-50619 | MS.gene88934:CDS | 50.0% | |
| GCTGCTGATCTAGTGGCTTA+TGG | + | chr1.3:51053-51072 | MS.gene88934:CDS | 50.0% | |
| GGTGTGTCTAACACAGCACA+AGG | + | chr1.3:49863-49882 | MS.gene88934:CDS | 50.0% | |
| TGATGAGATCGGAGCTGACA+AGG | + | chr1.3:50767-50786 | MS.gene88934:CDS | 50.0% | |
| TTCTGTCAACTTTGGCACGC+CGG | + | chr1.3:50290-50309 | MS.gene88934:CDS | 50.0% | |
| TTGGACAAGGGAACAGGTAG+AGG | + | chr1.3:50220-50239 | MS.gene88934:CDS | 50.0% | |
| TTGGAGGTTTACCTTCAGGC+TGG | - | chr1.3:50452-50471 | None:intergenic | 50.0% | |
| TTTGTGCTTAATCGGCGAGG+AGG | - | chr1.3:50543-50562 | None:intergenic | 50.0% | |
| !! | ATGTGGTGCTGCTGATCTAG+TGG | + | chr1.3:51046-51065 | MS.gene88934:CDS | 50.0% |
| !! | GCCATGGAAGCAGGTTTTGA+TGG | + | chr1.3:50609-50628 | MS.gene88934:CDS | 50.0% |
| ACTGCCTTCACCACTCGAAG+TGG | - | chr1.3:50744-50763 | None:intergenic | 55.0% | |
| CAAGGGAACAGGTAGAGGCA+TGG | + | chr1.3:50225-50244 | MS.gene88934:CDS | 55.0% | |
| CCATCTTGTATGGGGTGAGC+AGG | - | chr1.3:49584-49603 | None:intergenic | 55.0% | |
| CCTGCTCACCCCATACAAGA+TGG | + | chr1.3:49581-49600 | MS.gene88934:CDS | 55.0% | |
| CTGCCTTCACCACTCGAAGT+GGG | - | chr1.3:50743-50762 | None:intergenic | 55.0% | |
| CTTCCCACTTCGAGTGGTGA+AGG | + | chr1.3:50737-50756 | MS.gene88934:CDS | 55.0% | |
| GAGATCGGAGCTGACAAGGT+TGG | + | chr1.3:50771-50790 | MS.gene88934:CDS | 55.0% | |
| ! | TTGTCGCTTCCCACTTCGAG+TGG | + | chr1.3:50731-50750 | MS.gene88934:CDS | 55.0% |
| !! | GAGCTGACAAGGTTGGTGTG+AGG | + | chr1.3:50778-50797 | MS.gene88934:CDS | 55.0% |
| GTGCTTAATCGGCGAGGAGG+TGG | - | chr1.3:50540-50559 | None:intergenic | 60.0% | |
| TGGCGCCGTTAACGCGATCA+AGG | + | chr1.3:49753-49772 | MS.gene88934:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 49537 | 51217 | 49537 | ID=MS.gene88934 |
| chr1.3 | mRNA | 49537 | 51217 | 49537 | ID=MS.gene88934.t1;Parent=MS.gene88934 |
| chr1.3 | exon | 49537 | 49625 | 49537 | ID=MS.gene88934.t1.exon1;Parent=MS.gene88934.t1 |
| chr1.3 | CDS | 49537 | 49625 | 49537 | ID=cds.MS.gene88934.t1;Parent=MS.gene88934.t1 |
| chr1.3 | exon | 49745 | 49885 | 49745 | ID=MS.gene88934.t1.exon2;Parent=MS.gene88934.t1 |
| chr1.3 | CDS | 49745 | 49885 | 49745 | ID=cds.MS.gene88934.t1;Parent=MS.gene88934.t1 |
| chr1.3 | exon | 50199 | 50329 | 50199 | ID=MS.gene88934.t1.exon3;Parent=MS.gene88934.t1 |
| chr1.3 | CDS | 50199 | 50329 | 50199 | ID=cds.MS.gene88934.t1;Parent=MS.gene88934.t1 |
| chr1.3 | exon | 50445 | 51217 | 50445 | ID=MS.gene88934.t1.exon4;Parent=MS.gene88934.t1 |
| chr1.3 | CDS | 50445 | 51217 | 50445 | ID=cds.MS.gene88934.t1;Parent=MS.gene88934.t1 |
| Gene Sequence |
| Protein sequence |
