Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88988.t1 | PNY12007.1 | 86.8 | 379 | 46 | 1 | 1 | 375 | 1 | 379 | 2.30E-195 | 691.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88988.t1 | Q8LAH7 | 65.4 | 370 | 122 | 3 | 9 | 376 | 5 | 370 | 1.5e-142 | 507.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88988.t1 | A0A2K3P9Q7 | 86.8 | 379 | 46 | 1 | 1 | 375 | 1 | 379 | 1.7e-195 | 691.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050605 | MS.gene88988 | 0.814264 | 1.68E-51 | -1.69E-46 |
| MS.gene050750 | MS.gene88988 | 0.816761 | 4.68E-52 | -1.69E-46 |
| MS.gene050953 | MS.gene88988 | 0.819053 | 1.42E-52 | -1.69E-46 |
| MS.gene051368 | MS.gene88988 | 0.815388 | 9.49E-52 | -1.69E-46 |
| MS.gene051983 | MS.gene88988 | 0.801828 | 7.49E-49 | -1.69E-46 |
| MS.gene052333 | MS.gene88988 | 0.848023 | 7.98E-60 | -1.69E-46 |
| MS.gene053494 | MS.gene88988 | 0.806215 | 9.17E-50 | -1.69E-46 |
| MS.gene054405 | MS.gene88988 | 0.819523 | 1.11E-52 | -1.69E-46 |
| MS.gene055367 | MS.gene88988 | 0.825907 | 3.63E-54 | -1.69E-46 |
| MS.gene055701 | MS.gene88988 | 0.865251 | 6.76E-65 | -1.69E-46 |
| MS.gene05595 | MS.gene88988 | 0.802102 | 6.58E-49 | -1.69E-46 |
| MS.gene057156 | MS.gene88988 | -0.807714 | 4.42E-50 | -1.69E-46 |
| MS.gene059609 | MS.gene88988 | 0.83243 | 9.50E-56 | -1.69E-46 |
| MS.gene060011 | MS.gene88988 | 0.817795 | 2.74E-52 | -1.69E-46 |
| MS.gene061114 | MS.gene88988 | -0.817337 | 3.47E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88988.t1 | MTR_3g115600 | 75.946 | 370 | 83 | 3 | 7 | 376 | 1 | 364 | 0.0 | 591 |
| MS.gene88988.t1 | MTR_5g006800 | 67.213 | 366 | 118 | 2 | 10 | 375 | 6 | 369 | 0.0 | 525 |
| MS.gene88988.t1 | MTR_5g006710 | 66.942 | 363 | 112 | 4 | 13 | 375 | 9 | 363 | 0.0 | 506 |
| MS.gene88988.t1 | MTR_5g006750 | 65.110 | 364 | 123 | 3 | 14 | 375 | 10 | 371 | 1.58e-178 | 501 |
| MS.gene88988.t1 | MTR_5g006780 | 66.209 | 364 | 119 | 3 | 14 | 375 | 10 | 371 | 2.41e-177 | 498 |
| MS.gene88988.t1 | MTR_5g006740 | 65.470 | 362 | 123 | 2 | 14 | 375 | 6 | 365 | 4.10e-177 | 497 |
| MS.gene88988.t1 | MTR_5g006670 | 65.746 | 362 | 116 | 4 | 14 | 375 | 6 | 359 | 2.15e-176 | 495 |
| MS.gene88988.t1 | MTR_5g008040 | 60.916 | 371 | 140 | 3 | 4 | 374 | 5 | 370 | 2.64e-168 | 475 |
| MS.gene88988.t1 | MTR_5g006740 | 62.431 | 362 | 117 | 3 | 14 | 375 | 6 | 348 | 6.92e-162 | 457 |
| MS.gene88988.t1 | MTR_5g006720 | 57.068 | 382 | 122 | 4 | 5 | 375 | 2 | 352 | 1.84e-151 | 431 |
| MS.gene88988.t1 | MTR_4g125470 | 52.022 | 371 | 165 | 4 | 16 | 374 | 19 | 388 | 6.00e-135 | 391 |
| MS.gene88988.t1 | MTR_5g006730 | 75.926 | 108 | 26 | 0 | 14 | 121 | 10 | 117 | 1.77e-55 | 179 |
| MS.gene88988.t1 | MTR_3g096570 | 64.557 | 79 | 24 | 2 | 175 | 252 | 3 | 78 | 3.98e-26 | 105 |
| MS.gene88988.t1 | MTR_3g096562 | 58.333 | 84 | 32 | 1 | 169 | 252 | 162 | 242 | 5.53e-25 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88988.t1 | AT1G76690 | 64.171 | 374 | 128 | 3 | 6 | 377 | 4 | 373 | 0.0 | 508 |
| MS.gene88988.t1 | AT1G76680 | 65.229 | 371 | 123 | 3 | 9 | 377 | 5 | 371 | 0.0 | 508 |
| MS.gene88988.t1 | AT1G76680 | 61.111 | 396 | 123 | 4 | 9 | 377 | 5 | 396 | 2.54e-175 | 494 |
| MS.gene88988.t1 | AT1G09400 | 64.134 | 329 | 107 | 3 | 22 | 348 | 1 | 320 | 1.21e-156 | 443 |
| MS.gene88988.t1 | AT1G09400 | 65.056 | 269 | 83 | 3 | 82 | 348 | 2 | 261 | 1.55e-127 | 367 |
| MS.gene88988.t1 | AT2G06050 | 48.819 | 381 | 178 | 5 | 10 | 374 | 6 | 385 | 1.21e-125 | 367 |
| MS.gene88988.t1 | AT2G06050 | 48.819 | 381 | 178 | 5 | 10 | 374 | 6 | 385 | 1.21e-125 | 367 |
| MS.gene88988.t1 | AT2G06050 | 48.819 | 381 | 178 | 5 | 10 | 374 | 6 | 385 | 1.21e-125 | 367 |
| MS.gene88988.t1 | AT1G17990 | 58.781 | 279 | 102 | 4 | 8 | 285 | 1 | 267 | 4.28e-119 | 346 |
| MS.gene88988.t1 | AT1G18020 | 58.781 | 279 | 102 | 4 | 8 | 285 | 1 | 267 | 4.28e-119 | 346 |
| MS.gene88988.t1 | AT1G17990 | 56.272 | 279 | 101 | 5 | 8 | 285 | 1 | 259 | 1.43e-110 | 324 |
Find 107 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGATAGTACTAGTTATTT+TGG | 0.113729 | 1.4:+469294 | None:intergenic |
| GTCCAAATGCCAGGCGTATT+TGG | 0.175163 | 1.4:+470296 | None:intergenic |
| ATACACACACGTACCATATT+TGG | 0.213055 | 1.4:+470178 | None:intergenic |
| CCTTTGAACACCTTCCTAAT+AGG | 0.291774 | 1.4:+469530 | None:intergenic |
| AATGGTCCTTGATGCCTATT+AGG | 0.301603 | 1.4:-469544 | MS.gene88988:CDS |
| GCTGCTGATCTAGTGGCTTA+TGG | 0.307172 | 1.4:-469446 | MS.gene88988:CDS |
| GGCTGAATCATTGAATCAAT+TGG | 0.309770 | 1.4:-469633 | MS.gene88988:CDS |
| AAAGGGACATTTATTGTTGC+TGG | 0.324243 | 1.4:-469512 | MS.gene88988:CDS |
| GACAGGATCATGCGTATAAA+AGG | 0.327954 | 1.4:+469343 | None:intergenic |
| GGATTTCATTTGTGCTTAAT+CGG | 0.331257 | 1.4:+469951 | None:intergenic |
| ACTAAGGGTGGCTTCTTGAT+TGG | 0.336328 | 1.4:-470669 | MS.gene88988:CDS |
| GGCTTGTTTGTGCATGATAT+TGG | 0.338072 | 1.4:+470031 | None:intergenic |
| GTGCGCCAAGTTCATGAAAA+AGG | 0.339105 | 1.4:-470242 | MS.gene88988:CDS |
| CTAAGGGTGGCTTCTTGATT+GGG | 0.342918 | 1.4:-470668 | MS.gene88988:CDS |
| TCCAAATGCCAGGCGTATTT+GGG | 0.350536 | 1.4:+470297 | None:intergenic |
| TATGACCTTGATCGCGTTAA+CGG | 0.364577 | 1.4:+470741 | None:intergenic |
| TTAAAGTTTCCCATCTTGTA+TGG | 0.364982 | 1.4:+470901 | None:intergenic |
| GACTCTGATCCTCAAGTATT+GGG | 0.377448 | 1.4:-469665 | MS.gene88988:CDS |
| CCATCTTGTATGGGGTGAGC+AGG | 0.381597 | 1.4:+470911 | None:intergenic |
| ACCCAAATACGCCTGGCATT+TGG | 0.384553 | 1.4:-470298 | MS.gene88988:CDS |
| TTGTTGCTGGAGGTTATGAT+AGG | 0.394121 | 1.4:-469499 | MS.gene88988:CDS |
| ATTAGCTGCAGCAGGATCAT+TGG | 0.397402 | 1.4:+469991 | None:intergenic |
| TTAAATTGTGTAACCATCCT+TGG | 0.400376 | 1.4:+469584 | None:intergenic |
| TCATGAACTTGGCGCACAAT+TGG | 0.406981 | 1.4:+470248 | None:intergenic |
| ACCATATTTGGATACTCTTC+CGG | 0.408173 | 1.4:+470190 | None:intergenic |
| GATATTGGAGGTTTACCTTC+AGG | 0.416474 | 1.4:+470046 | None:intergenic |
| TTCTTGATTGGGGAAGCATC+TGG | 0.424746 | 1.4:-470657 | MS.gene88988:CDS |
| GTATAAAAGGTAGTTGGATC+AGG | 0.427027 | 1.4:+469356 | None:intergenic |
| CTTGCTTGATCAATTTCTAA+AGG | 0.427817 | 1.4:-469840 | MS.gene88988:CDS |
| AACGACAGAGATGACGAGTA+TGG | 0.432506 | 1.4:-469809 | MS.gene88988:CDS |
| GCCGGAAGAGTATCCAAATA+TGG | 0.433682 | 1.4:-470191 | MS.gene88988:intron |
| TATACGCATGATCCTGTCCT+TGG | 0.445992 | 1.4:-469338 | MS.gene88988:CDS |
| AATAGGCATCAAGGACCATT+TGG | 0.455116 | 1.4:+469547 | None:intergenic |
| TGGCATTTGGACAAGGGAAC+AGG | 0.464254 | 1.4:-470285 | MS.gene88988:CDS |
| CATCTTGTATGGGGTGAGCA+GGG | 0.471532 | 1.4:+470912 | None:intergenic |
| TTATTCTCAAAGATCAACTA+AGG | 0.473661 | 1.4:-470685 | MS.gene88988:CDS |
| GCTGAATCATTGAATCAATT+GGG | 0.474970 | 1.4:-469632 | MS.gene88988:CDS |
| AGAGATAGAAGGATGACTAA+AGG | 0.476048 | 1.4:-470967 | None:intergenic |
| GCAAGAAATGCCATGGAAGC+AGG | 0.479264 | 1.4:-469899 | MS.gene88988:CDS |
| GTAGAGATACATGGAGCTAA+TGG | 0.479754 | 1.4:-469866 | MS.gene88988:CDS |
| GTGCTTAATCGGCGAGGAGG+TGG | 0.494140 | 1.4:+469962 | None:intergenic |
| TTGGACAAGGGAACAGGTAG+AGG | 0.495054 | 1.4:-470279 | MS.gene88988:CDS |
| TAAAGTTTCCCATCTTGTAT+GGG | 0.501559 | 1.4:+470902 | None:intergenic |
| TATGATAGGAGTGAAGGAAA+TGG | 0.503378 | 1.4:-469485 | MS.gene88988:CDS |
| AGACTCTGATCCTCAAGTAT+TGG | 0.505390 | 1.4:-469666 | MS.gene88988:CDS |
| TCCATCAAAACCTGCTTCCA+TGG | 0.506298 | 1.4:+469889 | None:intergenic |
| TCAAGTATTGGGTATTTACA+TGG | 0.517434 | 1.4:-469654 | MS.gene88988:CDS |
| CCTGCTCACCCCATACAAGA+TGG | 0.518048 | 1.4:-470911 | MS.gene88988:CDS |
| TGTTCCCTTGTCCAAATGCC+AGG | 0.522788 | 1.4:+470287 | None:intergenic |
| GGATATTGATTAGCTGCAGC+AGG | 0.526559 | 1.4:+469983 | None:intergenic |
| CTTCCCACTTCGAGTGGTGA+AGG | 0.529500 | 1.4:-469762 | MS.gene88988:CDS |
| TTGGAGGTTTACCTTCAGGC+TGG | 0.534090 | 1.4:+470050 | None:intergenic |
| CCTATTAGGAAGGTGTTCAA+AGG | 0.534129 | 1.4:-469530 | MS.gene88988:CDS |
| TTAATACGACAGGATAGTGT+TGG | 0.537539 | 1.4:-470766 | MS.gene88988:intron |
| CACCTTCCTAATAGGCATCA+AGG | 0.537835 | 1.4:+469538 | None:intergenic |
| TTGGAGATATCTTTCTGAAG+AGG | 0.538385 | 1.4:+470010 | None:intergenic |
| TTGTTTGTGCATGATATTGG+AGG | 0.543879 | 1.4:+470034 | None:intergenic |
| CTATTAGGAAGGTGTTCAAA+GGG | 0.545620 | 1.4:-469529 | MS.gene88988:CDS |
| TCATGCGTATAAAAGGTAGT+TGG | 0.551693 | 1.4:+469350 | None:intergenic |
| AAAAGGTACCCAAATACGCC+TGG | 0.553805 | 1.4:-470305 | MS.gene88988:intron |
| ATCTTGTATGGGGTGAGCAG+GGG | 0.554437 | 1.4:+470913 | None:intergenic |
| TTTGATGGAGTAGAGATACA+TGG | 0.555461 | 1.4:-469875 | MS.gene88988:CDS |
| ATACGCCTGGCATTTGGACA+AGG | 0.556441 | 1.4:-470292 | MS.gene88988:CDS |
| TTCTGTCAACTTTGGCACGC+CGG | 0.558422 | 1.4:-470209 | MS.gene88988:CDS |
| ATGTGGTGCTGCTGATCTAG+TGG | 0.559206 | 1.4:-469453 | MS.gene88988:CDS |
| ACAAGTGTGACACCACCAAA+TGG | 0.560123 | 1.4:-469562 | MS.gene88988:CDS |
| TGGCGCCGTTAACGCGATCA+AGG | 0.570814 | 1.4:-470746 | MS.gene88988:CDS |
| GATGACTAAAGGAGAAGTAA+TGG | 0.579090 | 1.4:-470956 | MS.gene88988:CDS |
| TAAGGGTGGCTTCTTGATTG+GGG | 0.580264 | 1.4:-470667 | MS.gene88988:CDS |
| GTCCTTGATGCCTATTAGGA+AGG | 0.582773 | 1.4:-469540 | MS.gene88988:CDS |
| ATGGATAATCACTATATCCA+AGG | 0.584629 | 1.4:+469321 | None:intergenic |
| TAATCACTATATCCAAGGAC+AGG | 0.584850 | 1.4:+469326 | None:intergenic |
| CTGCTCACCCCATACAAGAT+GGG | 0.585227 | 1.4:-470910 | MS.gene88988:CDS |
| AAAGTTTCCCATCTTGTATG+GGG | 0.586684 | 1.4:+470903 | None:intergenic |
| GAAACTTTAATCTATCTCAC+AGG | 0.587121 | 1.4:-470888 | MS.gene88988:intron |
| AATTGCTGCAAGAAATGCCA+TGG | 0.589036 | 1.4:-469906 | MS.gene88988:CDS |
| AAAGGAGAAGTAATGGTCGA+TGG | 0.589838 | 1.4:-470949 | MS.gene88988:CDS |
| GGAGGTTATGATAGGAGTGA+AGG | 0.591271 | 1.4:-469491 | MS.gene88988:CDS |
| TCTCAAAGATCAACTAAGGG+TGG | 0.594762 | 1.4:-470681 | MS.gene88988:CDS |
| TTGTCGCTTCCCACTTCGAG+TGG | 0.596275 | 1.4:-469768 | MS.gene88988:CDS |
| ACTGCCTTCACCACTCGAAG+TGG | 0.598555 | 1.4:+469758 | None:intergenic |
| TGAAGTCATTGACAAGCATG+TGG | 0.600270 | 1.4:+469930 | None:intergenic |
| GGGACATTTATTGTTGCTGG+AGG | 0.600926 | 1.4:-469509 | MS.gene88988:CDS |
| AAGGCAGTAGCTGATGAGAT+CGG | 0.601265 | 1.4:-469743 | MS.gene88988:CDS |
| AGGCATCAAGGACCATTTGG+TGG | 0.602094 | 1.4:+469550 | None:intergenic |
| TGATGAGATCGGAGCTGACA+AGG | 0.615859 | 1.4:-469732 | MS.gene88988:CDS |
| TATAAAAGGTAGTTGGATCA+GGG | 0.616334 | 1.4:+469357 | None:intergenic |
| CAAGGGAACAGGTAGAGGCA+TGG | 0.618836 | 1.4:-470274 | MS.gene88988:CDS |
| TCATATGATTGAGCCAAGGA+TGG | 0.619695 | 1.4:-469597 | MS.gene88988:CDS |
| GGTGTGTCTAACACAGCACA+AGG | 0.629575 | 1.4:-470636 | MS.gene88988:CDS |
| TACGCCTGGCATTTGGACAA+GGG | 0.635846 | 1.4:-470291 | MS.gene88988:CDS |
| ATGTAAATACCCAATACTTG+AGG | 0.640485 | 1.4:+469656 | None:intergenic |
| TTTGTGCTTAATCGGCGAGG+AGG | 0.648362 | 1.4:+469959 | None:intergenic |
| TATTCTCAAAGATCAACTAA+GGG | 0.648427 | 1.4:-470684 | MS.gene88988:CDS |
| GATGTAGTATACCAGCCTGA+AGG | 0.656347 | 1.4:-470061 | MS.gene88988:intron |
| AAAAGGTAGTTGGATCAGGG+TGG | 0.658195 | 1.4:+469360 | None:intergenic |
| CTGCCTTCACCACTCGAAGT+GGG | 0.659608 | 1.4:+469759 | None:intergenic |
| GAGATCGGAGCTGACAAGGT+TGG | 0.665946 | 1.4:-469728 | MS.gene88988:CDS |
| TCATTTGTGCTTAATCGGCG+AGG | 0.670046 | 1.4:+469956 | None:intergenic |
| CAATCATTATAATCAGCGAA+AGG | 0.671533 | 1.4:+469692 | None:intergenic |
| GAATAATATGAAACAGCATG+AGG | 0.679009 | 1.4:+470702 | None:intergenic |
| GACAGAGATGACGAGTATGG+AGG | 0.692429 | 1.4:-469806 | MS.gene88988:CDS |
| TAAAAGATTTGAACTCAACG+TGG | 0.709690 | 1.4:-469393 | MS.gene88988:CDS |
| GAGCTGACAAGGTTGGTGTG+AGG | 0.727383 | 1.4:-469721 | MS.gene88988:CDS |
| ACTGTCATATGATTGAGCCA+AGG | 0.734502 | 1.4:-469601 | MS.gene88988:CDS |
| GGAAATGGTGCTATAGCATG+TGG | 0.744862 | 1.4:-469470 | MS.gene88988:CDS |
| GTGTGTCTAACACAGCACAA+GGG | 0.755183 | 1.4:-470635 | MS.gene88988:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATGATTAATAAAATTAC+CGG | + | chr1.4:469714-469733 | None:intergenic | 10.0% |
| !! | TAATAATATACACATATAAT+TGG | - | chr1.4:470176-470195 | MS.gene88988:intron | 10.0% |
| !! | AATTTATAAATTAATTCGAC+CGG | - | chr1.4:469692-469711 | MS.gene88988:CDS | 15.0% |
| !!! | TTAATTTAATTTAATACGAC+AGG | - | chr1.4:469483-469502 | MS.gene88988:CDS | 15.0% |
| !! | ATGAAATAAAATCCTTGTAA+TGG | + | chr1.4:470114-470133 | None:intergenic | 20.0% |
| !! | TGAAATAAAATCCTTGTAAT+GGG | + | chr1.4:470113-470132 | None:intergenic | 20.0% |
| !! | TTGATGAGTGAAAAAATTAA+TGG | - | chr1.4:469845-469864 | MS.gene88988:CDS | 20.0% |
| ! | AAACAACGCCAAAATTAATT+GGG | - | chr1.4:469810-469829 | MS.gene88988:CDS | 25.0% |
| ! | AACATGGATGATCAAATAAA+AGG | - | chr1.4:469937-469956 | MS.gene88988:CDS | 25.0% |
| ! | TATTCTCAAAGATCAACTAA+GGG | - | chr1.4:469575-469594 | MS.gene88988:CDS | 25.0% |
| ! | TGTATATTTATCCCATTACA+AGG | - | chr1.4:470099-470118 | MS.gene88988:intron | 25.0% |
| ! | TTATTCTCAAAGATCAACTA+AGG | - | chr1.4:469574-469593 | MS.gene88988:CDS | 25.0% |
| !! | AAAATTAATGGAGCAGATTT+TGG | - | chr1.4:469857-469876 | MS.gene88988:CDS | 25.0% |
| !!! | ATTTTTTCACTCATCAACAA+TGG | + | chr1.4:469842-469861 | None:intergenic | 25.0% |
| !!! | GTGTGTGTTTTTTTTCTTTT+TGG | - | chr1.4:469435-469454 | MS.gene88988:CDS | 25.0% |
| ATGGATAATCACTATATCCA+AGG | + | chr1.4:470941-470960 | None:intergenic | 30.0% | |
| ATGTAAATACCCAATACTTG+AGG | + | chr1.4:470606-470625 | None:intergenic | 30.0% | |
| CAAACAACGCCAAAATTAAT+TGG | - | chr1.4:469809-469828 | MS.gene88988:CDS | 30.0% | |
| CAATCATTATAATCAGCGAA+AGG | + | chr1.4:470570-470589 | None:intergenic | 30.0% | |
| CCAAAGTTGACAGAAAAATA+TGG | + | chr1.4:470045-470064 | None:intergenic | 30.0% | |
| CTTGCTTGATCAATTTCTAA+AGG | - | chr1.4:470419-470438 | MS.gene88988:intron | 30.0% | |
| GAAACTTTAATCTATCTCAC+AGG | - | chr1.4:469371-469390 | MS.gene88988:CDS | 30.0% | |
| GAATAATATGAAACAGCATG+AGG | + | chr1.4:469560-469579 | None:intergenic | 30.0% | |
| GCTGAATCATTGAATCAATT+GGG | - | chr1.4:470627-470646 | MS.gene88988:intron | 30.0% | |
| GGATTTCATTTGTGCTTAAT+CGG | + | chr1.4:470311-470330 | None:intergenic | 30.0% | |
| TAAAAGATTTGAACTCAACG+TGG | - | chr1.4:470866-470885 | MS.gene88988:intron | 30.0% | |
| TAAAGTTTCCCATCTTGTAT+GGG | + | chr1.4:469360-469379 | None:intergenic | 30.0% | |
| TATAAAAGGTAGTTGGATCA+GGG | + | chr1.4:470905-470924 | None:intergenic | 30.0% | |
| TTAAAGTTTCCCATCTTGTA+TGG | + | chr1.4:469361-469380 | None:intergenic | 30.0% | |
| TTAAATTGTGTAACCATCCT+TGG | + | chr1.4:470678-470697 | None:intergenic | 30.0% | |
| ! | ACGTTGAGTTCAAATCTTTT+AGG | + | chr1.4:470867-470886 | None:intergenic | 30.0% |
| ! | CCATATTTTTCTGTCAACTT+TGG | - | chr1.4:470042-470061 | MS.gene88988:CDS | 30.0% |
| ! | GGAATTTGCCCAATTAATTT+TGG | + | chr1.4:469821-469840 | None:intergenic | 30.0% |
| !! | CAATTAATTTTGGCGTTGTT+TGG | + | chr1.4:469811-469830 | None:intergenic | 30.0% |
| !! | TCAAATCTTTTAGGAAGATC+TGG | + | chr1.4:470858-470877 | None:intergenic | 30.0% |
| !! | TCAAGTATTGGGTATTTACA+TGG | - | chr1.4:470605-470624 | MS.gene88988:intron | 30.0% |
| !!! | ACGAGAATGCTTTTTTAACA+TGG | - | chr1.4:469921-469940 | MS.gene88988:CDS | 30.0% |
| AAAGGGACATTTATTGTTGC+TGG | - | chr1.4:470747-470766 | MS.gene88988:CDS | 35.0% | |
| AAAGTTTCCCATCTTGTATG+GGG | + | chr1.4:469359-469378 | None:intergenic | 35.0% | |
| ACCATATTTGGATACTCTTC+CGG | + | chr1.4:470072-470091 | None:intergenic | 35.0% | |
| ATACACACACGTACCATATT+TGG | + | chr1.4:470084-470103 | None:intergenic | 35.0% | |
| GGCTGAATCATTGAATCAAT+TGG | - | chr1.4:470626-470645 | MS.gene88988:intron | 35.0% | |
| GTATAAAAGGTAGTTGGATC+AGG | + | chr1.4:470906-470925 | None:intergenic | 35.0% | |
| TAATCACTATATCCAAGGAC+AGG | + | chr1.4:470936-470955 | None:intergenic | 35.0% | |
| TATGATAGGAGTGAAGGAAA+TGG | - | chr1.4:470774-470793 | MS.gene88988:intron | 35.0% | |
| TCATGCGTATAAAAGGTAGT+TGG | + | chr1.4:470912-470931 | None:intergenic | 35.0% | |
| TTAATACGACAGGATAGTGT+TGG | - | chr1.4:469493-469512 | MS.gene88988:CDS | 35.0% | |
| TTGTTTGTGCATGATATTGG+AGG | + | chr1.4:470228-470247 | None:intergenic | 35.0% | |
| TTTGATGGAGTAGAGATACA+TGG | - | chr1.4:470384-470403 | MS.gene88988:intron | 35.0% | |
| ! | TTGGAGATATCTTTCTGAAG+AGG | + | chr1.4:470252-470271 | None:intergenic | 35.0% |
| !! | CTATTAGGAAGGTGTTCAAA+GGG | - | chr1.4:470730-470749 | MS.gene88988:CDS | 35.0% |
| AAAGGAGAAGTAATGGTCGA+TGG | - | chr1.4:469310-469329 | MS.gene88988:CDS | 40.0% | |
| AATAGGCATCAAGGACCATT+TGG | + | chr1.4:470715-470734 | None:intergenic | 40.0% | |
| AATGGTCCTTGATGCCTATT+AGG | - | chr1.4:470715-470734 | MS.gene88988:CDS | 40.0% | |
| AATTGCTGCAAGAAATGCCA+TGG | - | chr1.4:470353-470372 | MS.gene88988:intron | 40.0% | |
| ACTGTCATATGATTGAGCCA+AGG | - | chr1.4:470658-470677 | MS.gene88988:CDS | 40.0% | |
| AGACTCTGATCCTCAAGTAT+TGG | - | chr1.4:470593-470612 | MS.gene88988:intron | 40.0% | |
| CCTTTGAACACCTTCCTAAT+AGG | + | chr1.4:470732-470751 | None:intergenic | 40.0% | |
| GACAGGATCATGCGTATAAA+AGG | + | chr1.4:470919-470938 | None:intergenic | 40.0% | |
| GACTCTGATCCTCAAGTATT+GGG | - | chr1.4:470594-470613 | MS.gene88988:intron | 40.0% | |
| GATATTGGAGGTTTACCTTC+AGG | + | chr1.4:470216-470235 | None:intergenic | 40.0% | |
| GTAGAGATACATGGAGCTAA+TGG | - | chr1.4:470393-470412 | MS.gene88988:intron | 40.0% | |
| TATGACCTTGATCGCGTTAA+CGG | + | chr1.4:469521-469540 | None:intergenic | 40.0% | |
| TCATATGATTGAGCCAAGGA+TGG | - | chr1.4:470662-470681 | MS.gene88988:CDS | 40.0% | |
| TCTCAAAGATCAACTAAGGG+TGG | - | chr1.4:469578-469597 | MS.gene88988:CDS | 40.0% | |
| TGAAGTCATTGACAAGCATG+TGG | + | chr1.4:470332-470351 | None:intergenic | 40.0% | |
| TTGTTGCTGGAGGTTATGAT+AGG | - | chr1.4:470760-470779 | MS.gene88988:intron | 40.0% | |
| ! | GGCTTGTTTGTGCATGATAT+TGG | + | chr1.4:470231-470250 | None:intergenic | 40.0% |
| !! | CCTATTAGGAAGGTGTTCAA+AGG | - | chr1.4:470729-470748 | MS.gene88988:CDS | 40.0% |
| !! | TGGCTCCTTTTTCATGAACT+TGG | + | chr1.4:470025-470044 | None:intergenic | 40.0% |
| AAAAGGTAGTTGGATCAGGG+TGG | + | chr1.4:470902-470921 | None:intergenic | 45.0% | |
| AACGACAGAGATGACGAGTA+TGG | - | chr1.4:470450-470469 | MS.gene88988:intron | 45.0% | |
| AAGGCAGTAGCTGATGAGAT+CGG | - | chr1.4:470516-470535 | MS.gene88988:intron | 45.0% | |
| ACAAGTGTGACACCACCAAA+TGG | - | chr1.4:470697-470716 | MS.gene88988:CDS | 45.0% | |
| ACTAAGGGTGGCTTCTTGAT+TGG | - | chr1.4:469590-469609 | MS.gene88988:CDS | 45.0% | |
| ATTAGCTGCAGCAGGATCAT+TGG | + | chr1.4:470271-470290 | None:intergenic | 45.0% | |
| CACCTTCCTAATAGGCATCA+AGG | + | chr1.4:470724-470743 | None:intergenic | 45.0% | |
| CTAAGGGTGGCTTCTTGATT+GGG | - | chr1.4:469591-469610 | MS.gene88988:CDS | 45.0% | |
| GATGTAGTATACCAGCCTGA+AGG | - | chr1.4:470198-470217 | MS.gene88988:CDS | 45.0% | |
| GGAGGTTATGATAGGAGTGA+AGG | - | chr1.4:470768-470787 | MS.gene88988:intron | 45.0% | |
| GGGACATTTATTGTTGCTGG+AGG | - | chr1.4:470750-470769 | MS.gene88988:CDS | 45.0% | |
| GTCCTTGATGCCTATTAGGA+AGG | - | chr1.4:470719-470738 | MS.gene88988:CDS | 45.0% | |
| GTGCGCCAAGTTCATGAAAA+AGG | - | chr1.4:470017-470036 | MS.gene88988:CDS | 45.0% | |
| GTGTGTCTAACACAGCACAA+GGG | - | chr1.4:469624-469643 | MS.gene88988:CDS | 45.0% | |
| TAAGGGTGGCTTCTTGATTG+GGG | - | chr1.4:469592-469611 | MS.gene88988:CDS | 45.0% | |
| TATACGCATGATCCTGTCCT+TGG | - | chr1.4:470921-470940 | MS.gene88988:CDS | 45.0% | |
| TCATGAACTTGGCGCACAAT+TGG | + | chr1.4:470014-470033 | None:intergenic | 45.0% | |
| TCATTTGTGCTTAATCGGCG+AGG | + | chr1.4:470306-470325 | None:intergenic | 45.0% | |
| TCCAAATGCCAGGCGTATTT+GGG | + | chr1.4:469965-469984 | None:intergenic | 45.0% | |
| TCCATCAAAACCTGCTTCCA+TGG | + | chr1.4:470373-470392 | None:intergenic | 45.0% | |
| ! | GGATATTGATTAGCTGCAGC+AGG | + | chr1.4:470279-470298 | None:intergenic | 45.0% |
| ! | GGCTTATGGACGTCTCTTTT+TGG | - | chr1.4:470827-470846 | MS.gene88988:intron | 45.0% |
| !! | AAAAGGTACCCAAATACGCC+TGG | - | chr1.4:469954-469973 | MS.gene88988:CDS | 45.0% |
| !! | GCCGGAAGAGTATCCAAATA+TGG | - | chr1.4:470068-470087 | MS.gene88988:intron | 45.0% |
| !! | GGAAATGGTGCTATAGCATG+TGG | - | chr1.4:470789-470808 | MS.gene88988:intron | 45.0% |
| !! | TTCTTGATTGGGGAAGCATC+TGG | - | chr1.4:469602-469621 | MS.gene88988:CDS | 45.0% |
| ACCCAAATACGCCTGGCATT+TGG | - | chr1.4:469961-469980 | MS.gene88988:CDS | 50.0% | |
| AGGCATCAAGGACCATTTGG+TGG | + | chr1.4:470712-470731 | None:intergenic | 50.0% | |
| ATACGCCTGGCATTTGGACA+AGG | - | chr1.4:469967-469986 | MS.gene88988:CDS | 50.0% | |
| ATCTTGTATGGGGTGAGCAG+GGG | + | chr1.4:469349-469368 | None:intergenic | 50.0% | |
| CATCTTGTATGGGGTGAGCA+GGG | + | chr1.4:469350-469369 | None:intergenic | 50.0% | |
| CTGCTCACCCCATACAAGAT+GGG | - | chr1.4:469349-469368 | MS.gene88988:CDS | 50.0% | |
| GACAGAGATGACGAGTATGG+AGG | - | chr1.4:470453-470472 | MS.gene88988:intron | 50.0% | |
| GCAAGAAATGCCATGGAAGC+AGG | - | chr1.4:470360-470379 | MS.gene88988:intron | 50.0% | |
| GCTGCTGATCTAGTGGCTTA+TGG | - | chr1.4:470813-470832 | MS.gene88988:intron | 50.0% | |
| GGTGTGTCTAACACAGCACA+AGG | - | chr1.4:469623-469642 | MS.gene88988:CDS | 50.0% | |
| GTCCAAATGCCAGGCGTATT+TGG | + | chr1.4:469966-469985 | None:intergenic | 50.0% | |
| TACGCCTGGCATTTGGACAA+GGG | - | chr1.4:469968-469987 | MS.gene88988:CDS | 50.0% | |
| TGATGAGATCGGAGCTGACA+AGG | - | chr1.4:470527-470546 | MS.gene88988:intron | 50.0% | |
| TGGCATTTGGACAAGGGAAC+AGG | - | chr1.4:469974-469993 | MS.gene88988:CDS | 50.0% | |
| TGTTCCCTTGTCCAAATGCC+AGG | + | chr1.4:469975-469994 | None:intergenic | 50.0% | |
| TTCTGTCAACTTTGGCACGC+CGG | - | chr1.4:470050-470069 | MS.gene88988:CDS | 50.0% | |
| TTGGACAAGGGAACAGGTAG+AGG | - | chr1.4:469980-469999 | MS.gene88988:CDS | 50.0% | |
| TTGGAGGTTTACCTTCAGGC+TGG | + | chr1.4:470212-470231 | None:intergenic | 50.0% | |
| TTTGTGCTTAATCGGCGAGG+AGG | + | chr1.4:470303-470322 | None:intergenic | 50.0% | |
| !! | ATGTGGTGCTGCTGATCTAG+TGG | - | chr1.4:470806-470825 | MS.gene88988:intron | 50.0% |
| !! | GCCATGGAAGCAGGTTTTGA+TGG | - | chr1.4:470369-470388 | MS.gene88988:intron | 50.0% |
| ACTGCCTTCACCACTCGAAG+TGG | + | chr1.4:470504-470523 | None:intergenic | 55.0% | |
| CAAGGGAACAGGTAGAGGCA+TGG | - | chr1.4:469985-470004 | MS.gene88988:CDS | 55.0% | |
| CCATCTTGTATGGGGTGAGC+AGG | + | chr1.4:469351-469370 | None:intergenic | 55.0% | |
| CCTGCTCACCCCATACAAGA+TGG | - | chr1.4:469348-469367 | MS.gene88988:CDS | 55.0% | |
| CTGCCTTCACCACTCGAAGT+GGG | + | chr1.4:470503-470522 | None:intergenic | 55.0% | |
| CTTCCCACTTCGAGTGGTGA+AGG | - | chr1.4:470497-470516 | MS.gene88988:intron | 55.0% | |
| GAGATCGGAGCTGACAAGGT+TGG | - | chr1.4:470531-470550 | MS.gene88988:intron | 55.0% | |
| ! | TTGTCGCTTCCCACTTCGAG+TGG | - | chr1.4:470491-470510 | MS.gene88988:intron | 55.0% |
| !! | GAGCTGACAAGGTTGGTGTG+AGG | - | chr1.4:470538-470557 | MS.gene88988:intron | 55.0% |
| GTGCTTAATCGGCGAGGAGG+TGG | + | chr1.4:470300-470319 | None:intergenic | 60.0% | |
| TGGCGCCGTTAACGCGATCA+AGG | - | chr1.4:469513-469532 | MS.gene88988:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 469304 | 470977 | 469304 | ID=MS.gene88988 |
| chr1.4 | mRNA | 469304 | 470977 | 469304 | ID=MS.gene88988.t1;Parent=MS.gene88988 |
| chr1.4 | exon | 470889 | 470977 | 470889 | ID=MS.gene88988.t1.exon1;Parent=MS.gene88988.t1 |
| chr1.4 | CDS | 470889 | 470977 | 470889 | ID=cds.MS.gene88988.t1;Parent=MS.gene88988.t1 |
| chr1.4 | exon | 470636 | 470776 | 470636 | ID=MS.gene88988.t1.exon2;Parent=MS.gene88988.t1 |
| chr1.4 | CDS | 470636 | 470776 | 470636 | ID=cds.MS.gene88988.t1;Parent=MS.gene88988.t1 |
| chr1.4 | exon | 470192 | 470322 | 470192 | ID=MS.gene88988.t1.exon3;Parent=MS.gene88988.t1 |
| chr1.4 | CDS | 470192 | 470322 | 470192 | ID=cds.MS.gene88988.t1;Parent=MS.gene88988.t1 |
| chr1.4 | exon | 469304 | 470076 | 469304 | ID=MS.gene88988.t1.exon4;Parent=MS.gene88988.t1 |
| chr1.4 | CDS | 469304 | 470076 | 469304 | ID=cds.MS.gene88988.t1;Parent=MS.gene88988.t1 |
| Gene Sequence |
| Protein sequence |
