Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89097.t1 | XP_003597790.2 | 93.4 | 364 | 24 | 0 | 1 | 364 | 1 | 364 | 6.90E-205 | 723 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89097.t1 | Q9M8L2 | 47.7 | 371 | 170 | 6 | 1 | 364 | 1 | 354 | 2.0e-99 | 364.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89097.t1 | G7II60 | 93.4 | 364 | 24 | 0 | 1 | 364 | 1 | 364 | 5.0e-205 | 723.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050467 | MS.gene89097 | 0.818321 | 2.08E-52 | -1.69E-46 |
| MS.gene050532 | MS.gene89097 | 0.811436 | 7.01E-51 | -1.69E-46 |
| MS.gene057173 | MS.gene89097 | 0.814388 | 1.58E-51 | -1.69E-46 |
| MS.gene058041 | MS.gene89097 | -0.819877 | 9.22E-53 | -1.69E-46 |
| MS.gene05884 | MS.gene89097 | 0.810327 | 1.22E-50 | -1.69E-46 |
| MS.gene060339 | MS.gene89097 | -0.800663 | 1.30E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89097.t1 | MTR_2g102370 | 93.407 | 364 | 24 | 0 | 1 | 364 | 1 | 364 | 0.0 | 702 |
| MS.gene89097.t1 | MTR_4g011900 | 60.165 | 364 | 139 | 2 | 1 | 364 | 3 | 360 | 3.19e-161 | 456 |
| MS.gene89097.t1 | MTR_2g102355 | 87.705 | 122 | 15 | 0 | 176 | 297 | 46 | 167 | 4.11e-73 | 225 |
| MS.gene89097.t1 | MTR_8g085650 | 36.043 | 369 | 199 | 10 | 1 | 364 | 5 | 341 | 1.90e-59 | 195 |
| MS.gene89097.t1 | MTR_7g095220 | 26.007 | 273 | 170 | 8 | 2 | 266 | 3 | 251 | 4.90e-19 | 87.4 |
| MS.gene89097.t1 | MTR_8g085600 | 29.268 | 205 | 124 | 7 | 3 | 205 | 77 | 262 | 9.55e-14 | 72.4 |
| MS.gene89097.t1 | MTR_4g108280 | 25.097 | 259 | 152 | 7 | 3 | 256 | 31 | 252 | 1.36e-13 | 71.6 |
| MS.gene89097.t1 | MTR_0105s0170 | 27.586 | 261 | 151 | 10 | 3 | 260 | 102 | 327 | 2.07e-13 | 71.6 |
| MS.gene89097.t1 | MTR_0345s0010 | 25.283 | 265 | 152 | 9 | 3 | 260 | 89 | 314 | 2.17e-13 | 71.2 |
| MS.gene89097.t1 | MTR_0105s0130 | 25.283 | 265 | 152 | 9 | 3 | 260 | 89 | 314 | 2.51e-13 | 71.2 |
| MS.gene89097.t1 | MTR_1330s0010 | 25.283 | 265 | 152 | 9 | 3 | 260 | 102 | 327 | 2.83e-13 | 70.9 |
| MS.gene89097.t1 | MTR_0105s0040 | 27.203 | 261 | 152 | 10 | 3 | 260 | 187 | 412 | 7.48e-13 | 70.1 |
| MS.gene89097.t1 | MTR_4g114110 | 25.347 | 288 | 172 | 11 | 3 | 277 | 81 | 338 | 4.86e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89097.t1 | AT1G80440 | 47.709 | 371 | 170 | 6 | 1 | 364 | 1 | 354 | 8.66e-121 | 353 |
| MS.gene89097.t1 | AT1G15670 | 48.501 | 367 | 178 | 5 | 1 | 364 | 1 | 359 | 2.93e-119 | 349 |
| MS.gene89097.t1 | AT2G44130 | 33.333 | 291 | 157 | 6 | 2 | 268 | 18 | 295 | 1.13e-41 | 150 |
| MS.gene89097.t1 | AT3G59940 | 29.177 | 401 | 228 | 10 | 2 | 353 | 14 | 407 | 1.88e-41 | 150 |
| MS.gene89097.t1 | AT3G63220 | 25.000 | 332 | 197 | 9 | 3 | 323 | 4 | 294 | 2.78e-18 | 85.5 |
| MS.gene89097.t1 | AT3G63220 | 25.000 | 332 | 197 | 9 | 3 | 323 | 11 | 301 | 3.24e-18 | 85.1 |
| MS.gene89097.t1 | AT3G63220 | 25.000 | 332 | 197 | 9 | 3 | 323 | 11 | 301 | 3.24e-18 | 85.1 |
| MS.gene89097.t1 | AT2G02870 | 24.727 | 275 | 169 | 9 | 3 | 276 | 117 | 354 | 4.04e-15 | 76.6 |
| MS.gene89097.t1 | AT2G02870 | 24.727 | 275 | 169 | 9 | 3 | 276 | 117 | 354 | 4.04e-15 | 76.6 |
| MS.gene89097.t1 | AT2G02870 | 24.727 | 275 | 169 | 9 | 3 | 276 | 117 | 354 | 4.04e-15 | 76.6 |
| MS.gene89097.t1 | AT1G14330 | 27.027 | 259 | 152 | 10 | 3 | 258 | 94 | 318 | 3.33e-14 | 73.9 |
| MS.gene89097.t1 | AT1G67480 | 28.696 | 230 | 138 | 6 | 3 | 230 | 39 | 244 | 2.69e-12 | 67.8 |
| MS.gene89097.t1 | AT1G67480 | 28.696 | 230 | 138 | 6 | 3 | 230 | 39 | 244 | 2.69e-12 | 67.8 |
| MS.gene89097.t1 | AT1G67480 | 28.696 | 230 | 138 | 6 | 3 | 230 | 39 | 244 | 2.69e-12 | 67.8 |
| MS.gene89097.t1 | AT2G24540 | 27.500 | 200 | 121 | 5 | 3 | 198 | 28 | 207 | 7.80e-11 | 63.5 |
Find 126 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTACTATGGAGTTGATTTC+AGG | 0.182172 | 2.4:+2672697 | None:intergenic |
| GGGTAACCCTTCACTTAATT+CGG | 0.272688 | 2.4:-2673007 | None:intergenic |
| TATCTGCTACGTGGCGTTGC+GGG | 0.273171 | 2.4:+2673133 | MS.gene89097:CDS |
| TGGAAACTGAAACAGGTATT+TGG | 0.276490 | 2.4:+2672965 | MS.gene89097:CDS |
| TGGATTGGGTCTAGTGGGTT+TGG | 0.289853 | 2.4:+2673663 | MS.gene89097:CDS |
| TTTGAAGCTTTCCATGAATC+AGG | 0.295391 | 2.4:-2673087 | None:intergenic |
| AGTTTCATACCAGGAATTTC+CGG | 0.301498 | 2.4:+2672756 | MS.gene89097:CDS |
| TGGGTTTGGAGAACCTTATA+TGG | 0.316034 | 2.4:+2673677 | MS.gene89097:CDS |
| CACTCTCGTGCTATGTCTTC+TGG | 0.327599 | 2.4:-2672724 | None:intergenic |
| TCACGCTCCCTCGCCATATC+AGG | 0.334734 | 2.4:-2673306 | None:intergenic |
| AATACATTTAGTTTATAAAT+CGG | 0.342579 | 2.4:-2672943 | None:intergenic |
| TACTCCAAACACCATTCTTC+AGG | 0.353583 | 2.4:-2673713 | None:intergenic |
| TCCAACACAAAGCCCATATA+AGG | 0.360295 | 2.4:-2673690 | None:intergenic |
| AGGGTATGATCTAGTTGTTA+TGG | 0.362184 | 2.4:+2673053 | MS.gene89097:CDS |
| CTTGGGCAGATGCATTGTTA+TGG | 0.371889 | 2.4:+2673643 | MS.gene89097:CDS |
| TGGCTACCGCCGGAAATTCC+TGG | 0.381513 | 2.4:-2672765 | None:intergenic |
| CGCCGGAGTTTCGCCGTGTC+CGG | 0.389061 | 2.4:+2672821 | MS.gene89097:CDS |
| GATTTATAAACTAAATGTAT+TGG | 0.393923 | 2.4:+2672945 | MS.gene89097:CDS |
| AGACATAGCACGAGAGTGTT+TGG | 0.398695 | 2.4:+2672729 | MS.gene89097:CDS |
| TTCACCGGCCACGTTCAATC+TGG | 0.407052 | 2.4:+2673756 | MS.gene89097:CDS |
| TGTTGCTTGTGTGGGAGCTT+GGG | 0.410270 | 2.4:+2673626 | MS.gene89097:CDS |
| GGGTATGATCTAGTTGTTAT+GGG | 0.418612 | 2.4:+2673054 | MS.gene89097:CDS |
| GTGGATCCCGCTTCCTGATA+TGG | 0.419518 | 2.4:+2673293 | MS.gene89097:CDS |
| GTGGAGGTGGGGTCCGGTCG+AGG | 0.421615 | 2.4:+2673452 | MS.gene89097:CDS |
| GAGAAGAATGTACATGTGTA+AGG | 0.422768 | 2.4:+2673533 | MS.gene89097:CDS |
| ATACATTTAGTTTATAAATC+GGG | 0.423905 | 2.4:-2672942 | None:intergenic |
| TCGATGTAGCCACGTGGAGG+TGG | 0.423970 | 2.4:+2673439 | MS.gene89097:CDS |
| GGTAACCCTTCACTTAATTC+GGG | 0.425963 | 2.4:-2673006 | None:intergenic |
| AGGTGGTGGCGAAGGTGCCT+AGG | 0.429241 | 2.4:+2673592 | MS.gene89097:CDS |
| GAGGATGGGACCCTGATTCA+TGG | 0.430085 | 2.4:+2673076 | MS.gene89097:CDS |
| GATGATGTGGTGGCATTGGA+TGG | 0.436126 | 2.4:+2673558 | MS.gene89097:CDS |
| TTGTGTGGATGGTTGTGAAT+TGG | 0.440798 | 2.4:+2673509 | MS.gene89097:CDS |
| CAGATGCATTGTTATGGATT+GGG | 0.443791 | 2.4:+2673649 | MS.gene89097:CDS |
| TTCATGGAAAGCTTCAAATT+CGG | 0.444403 | 2.4:+2673092 | MS.gene89097:CDS |
| ACCTTATATGGGCTTTGTGT+TGG | 0.447831 | 2.4:+2673689 | MS.gene89097:CDS |
| GCAGATGCATTGTTATGGAT+TGG | 0.454389 | 2.4:+2673648 | MS.gene89097:CDS |
| AATGTATTGGAAACTGAAAC+AGG | 0.458468 | 2.4:+2672958 | MS.gene89097:CDS |
| ATGTTGCTTGTGTGGGAGCT+TGG | 0.459885 | 2.4:+2673625 | MS.gene89097:CDS |
| GCAGGGCCCACCAGGCATAT+CGG | 0.462663 | 2.4:-2673157 | None:intergenic |
| GGGTTTGGAGAACCTTATAT+GGG | 0.462959 | 2.4:+2673678 | MS.gene89097:CDS |
| CGTTGCGGGGCCGATATGCC+TGG | 0.463058 | 2.4:+2673147 | MS.gene89097:CDS |
| CGCCGTGTCCGGAGGAGTAC+AGG | 0.466611 | 2.4:+2672832 | MS.gene89097:CDS |
| CAACCATCCACACAAGTCCT+TGG | 0.468884 | 2.4:-2673501 | None:intergenic |
| TGTTATGGATTGGGTCTAGT+GGG | 0.471404 | 2.4:+2673658 | MS.gene89097:CDS |
| TGGACCTGAAGAATGGTGTT+TGG | 0.471703 | 2.4:+2673709 | MS.gene89097:CDS |
| GGGTGATGATGTGGTGGCAT+TGG | 0.471752 | 2.4:+2673554 | MS.gene89097:CDS |
| CGTGCCAGAGCCATTGTCTC+CGG | 0.476636 | 2.4:-2673352 | None:intergenic |
| CGATGTAGCCACGTGGAGGT+GGG | 0.477914 | 2.4:+2673440 | MS.gene89097:CDS |
| AGCCACGTGGAGGTGGGGTC+CGG | 0.487081 | 2.4:+2673446 | MS.gene89097:CDS |
| ATCTAGTTGTTATGGGAGGA+TGG | 0.491431 | 2.4:+2673061 | MS.gene89097:CDS |
| TGTAGCTTTAGCCAATAAAC+CGG | 0.493397 | 2.4:-2672914 | None:intergenic |
| TTGCTCACGGTGGCTACCGC+CGG | 0.494147 | 2.4:-2672775 | None:intergenic |
| TTTGTCAAATTGCGGGTGTA+GGG | 0.495373 | 2.4:+2673034 | MS.gene89097:CDS |
| CGAAGGTGCCTAGGGAGATA+AGG | 0.500530 | 2.4:+2673601 | MS.gene89097:CDS |
| TGCATCAGATCATGAAAGAA+TGG | 0.501033 | 2.4:+2673194 | MS.gene89097:CDS |
| TTTGTGTTGGACCTGAAGAA+TGG | 0.506335 | 2.4:+2673702 | MS.gene89097:CDS |
| TGTTTGCCACCCTTTGCTCA+CGG | 0.517498 | 2.4:-2672788 | None:intergenic |
| GGTGGTGGCGAAGGTGCCTA+GGG | 0.518802 | 2.4:+2673593 | MS.gene89097:CDS |
| GAAAGAATGGTCTATGTGGC+AGG | 0.519321 | 2.4:+2673207 | MS.gene89097:CDS |
| ATCTGCTACGTGGCGTTGCG+GGG | 0.523853 | 2.4:+2673134 | MS.gene89097:CDS |
| TCACTTAATTCGGGTCCCAT+TGG | 0.527061 | 2.4:-2672997 | None:intergenic |
| CGGTAGCCACCGTGAGCAAA+GGG | 0.527349 | 2.4:+2672779 | MS.gene89097:CDS |
| CCCTCGCCATATCAGGAAGC+GGG | 0.530716 | 2.4:-2673299 | None:intergenic |
| TGTGCCGGAGACAATGGCTC+TGG | 0.531010 | 2.4:+2673348 | MS.gene89097:CDS |
| GCGGTAGCCACCGTGAGCAA+AGG | 0.533392 | 2.4:+2672778 | MS.gene89097:CDS |
| AGTTGTTGGTGGATATTGTA+CGG | 0.536411 | 2.4:+2673380 | MS.gene89097:CDS |
| ATTTGGAGCGAGTTACCAAT+GGG | 0.540800 | 2.4:+2672982 | MS.gene89097:CDS |
| TTGTTATGGATTGGGTCTAG+TGG | 0.542297 | 2.4:+2673657 | MS.gene89097:CDS |
| TGGTGACACGTGGAAGGTGG+TGG | 0.543700 | 2.4:+2673578 | MS.gene89097:CDS |
| GGCACGATCAAAGTTGTTGG+TGG | 0.544929 | 2.4:+2673369 | MS.gene89097:CDS |
| TATTTGGAGCGAGTTACCAA+TGG | 0.546070 | 2.4:+2672981 | MS.gene89097:CDS |
| TTATCTGCTACGTGGCGTTG+CGG | 0.546414 | 2.4:+2673132 | MS.gene89097:CDS |
| ACCCGCAATTTGACAAAACA+AGG | 0.548302 | 2.4:-2673028 | None:intergenic |
| GCAACCAGATTGAACGTGGC+CGG | 0.553033 | 2.4:-2673760 | None:intergenic |
| TCCCTCGCCATATCAGGAAG+CGG | 0.557334 | 2.4:-2673300 | None:intergenic |
| CGGAGTTTCGCCGTGTCCGG+AGG | 0.560636 | 2.4:+2672824 | MS.gene89097:CDS |
| CACGTGGAAGGTGGTGGCGA+AGG | 0.560862 | 2.4:+2673584 | MS.gene89097:CDS |
| GAGCATGACCTGTACTCCTC+CGG | 0.561000 | 2.4:-2672840 | None:intergenic |
| TCCCGCTTCCTGATATGGCG+AGG | 0.561759 | 2.4:+2673298 | MS.gene89097:CDS |
| TTGAAGCTTTCCATGAATCA+GGG | 0.562384 | 2.4:-2673086 | None:intergenic |
| GATAAGGAATGTTGCTTGTG+TGG | 0.563323 | 2.4:+2673617 | MS.gene89097:CDS |
| CTCCGGACACGGCGAAACTC+CGG | 0.563978 | 2.4:-2672823 | None:intergenic |
| TCTGGCACGATCAAAGTTGT+TGG | 0.564275 | 2.4:+2673366 | MS.gene89097:CDS |
| ATTTGGACTGAACCGTGACT+AGG | 0.569932 | 2.4:-2672870 | None:intergenic |
| TGGATGATGCCACATGTCCA+AGG | 0.571672 | 2.4:+2673484 | MS.gene89097:CDS |
| GATGTAGCCACGTGGAGGTG+GGG | 0.572404 | 2.4:+2673441 | MS.gene89097:CDS |
| AGAAGAATGTACATGTGTAA+GGG | 0.581931 | 2.4:+2673534 | MS.gene89097:CDS |
| TCTAGTTGTTATGGGAGGAT+GGG | 0.587902 | 2.4:+2673062 | MS.gene89097:CDS |
| GCAACATTCCTTATCTCCCT+AGG | 0.592170 | 2.4:-2673609 | None:intergenic |
| GCGGGGCCGATATGCCTGGT+GGG | 0.592603 | 2.4:+2673151 | MS.gene89097:CDS |
| GGATATTGTACGGAGATGCA+AGG | 0.594849 | 2.4:+2673390 | MS.gene89097:CDS |
| CACACAAGTCCTTGGACATG+TGG | 0.595115 | 2.4:-2673493 | None:intergenic |
| TGCGGGGCCGATATGCCTGG+TGG | 0.595490 | 2.4:+2673150 | MS.gene89097:CDS |
| TGCTCAGAAAATCCTAGTCA+CGG | 0.599471 | 2.4:+2672858 | MS.gene89097:CDS |
| CCCGCTTCCTGATATGGCGA+GGG | 0.599930 | 2.4:+2673299 | MS.gene89097:CDS |
| TGTCCAAGGACTTGTGTGGA+TGG | 0.600952 | 2.4:+2673498 | MS.gene89097:CDS |
| GAAAACCCAGAAAATTTCAC+CGG | 0.601148 | 2.4:+2673741 | MS.gene89097:CDS |
| GACCTGTACTCCTCCGGACA+CGG | 0.612366 | 2.4:-2672834 | None:intergenic |
| ATTGGATGGTGACACGTGGA+AGG | 0.617577 | 2.4:+2673572 | MS.gene89097:CDS |
| GAGGTGGGGTCCGGTCGAGG+AGG | 0.618236 | 2.4:+2673455 | MS.gene89097:CDS |
| ATGGGACCCGAATTAAGTGA+AGG | 0.619213 | 2.4:+2673000 | MS.gene89097:CDS |
| ATAAGGAATGTTGCTTGTGT+GGG | 0.622737 | 2.4:+2673618 | MS.gene89097:CDS |
| TCATGAAAGAATGGTCTATG+TGG | 0.631561 | 2.4:+2673203 | MS.gene89097:CDS |
| GATATTGTACGGAGATGCAA+GGG | 0.633940 | 2.4:+2673391 | MS.gene89097:CDS |
| GGATGGTGACACGTGGAAGG+TGG | 0.634958 | 2.4:+2673575 | MS.gene89097:CDS |
| TATGATCTAGTTGTTATGGG+AGG | 0.636400 | 2.4:+2673057 | MS.gene89097:CDS |
| GCAAACAGAGATTCAAACGC+CGG | 0.637123 | 2.4:+2672804 | MS.gene89097:CDS |
| TGGGACCCGAATTAAGTGAA+GGG | 0.640598 | 2.4:+2673001 | MS.gene89097:CDS |
| CATGTGTAAGGGTGATGATG+TGG | 0.641473 | 2.4:+2673545 | MS.gene89097:CDS |
| GTCAGCATTTGCTTACGATG+TGG | 0.642705 | 2.4:+2673260 | MS.gene89097:CDS |
| TAGCCACCGTGAGCAAAGGG+TGG | 0.650702 | 2.4:+2672782 | MS.gene89097:CDS |
| TTTGGTTCGAGTTTCATACC+AGG | 0.651758 | 2.4:+2672747 | MS.gene89097:CDS |
| GACCGGACCCCACCTCCACG+TGG | 0.662176 | 2.4:-2673448 | None:intergenic |
| GCGATTCGAACGTAGTGCTG+AGG | 0.664187 | 2.4:+2673413 | MS.gene89097:CDS |
| ACGATGTGGCAAATGATGTG+TGG | 0.666045 | 2.4:+2673274 | MS.gene89097:CDS |
| AAAAGCAACCAGATTGAACG+TGG | 0.667532 | 2.4:-2673764 | None:intergenic |
| GTGTAAGGGTGATGATGTGG+TGG | 0.677538 | 2.4:+2673548 | MS.gene89097:CDS |
| AGAATGGTCTATGTGGCAGG+AGG | 0.679340 | 2.4:+2673210 | MS.gene89097:CDS |
| CCCGCAATTTGACAAAACAA+GGG | 0.679482 | 2.4:-2673027 | None:intergenic |
| TTGCCACCCTTTGCTCACGG+TGG | 0.683953 | 2.4:-2672785 | None:intergenic |
| AGTTCGATGTAGCCACGTGG+AGG | 0.685810 | 2.4:+2673436 | MS.gene89097:CDS |
| TTCATACCAGGAATTTCCGG+CGG | 0.694230 | 2.4:+2672759 | MS.gene89097:CDS |
| TGGCATTGGATGGTGACACG+TGG | 0.697013 | 2.4:+2673568 | MS.gene89097:CDS |
| TGTGGCAGGAGGACATGACG+AGG | 0.708701 | 2.4:+2673221 | MS.gene89097:CDS |
| AGGAGTTCGATGTAGCCACG+TGG | 0.736829 | 2.4:+2673433 | MS.gene89097:CDS |
| CACATGTCCAAGGACTTGTG+TGG | 0.739846 | 2.4:+2673494 | MS.gene89097:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATACATTTAGTTTATAAAT+CGG | - | chr2.4:2672946-2672965 | None:intergenic | 10.0% |
| !! | GATTTATAAACTAAATGTAT+TGG | + | chr2.4:2672945-2672964 | MS.gene89097:CDS | 15.0% |
| !!! | ATACATTTAGTTTATAAATC+GGG | - | chr2.4:2672945-2672964 | None:intergenic | 15.0% |
| !!! | ATAATTTTTTATCTGCTACG+TGG | + | chr2.4:2673124-2673143 | MS.gene89097:CDS | 25.0% |
| !!! | GCTTTTTTCTGAATCAAATT+TGG | - | chr2.4:2672890-2672909 | None:intergenic | 25.0% |
| AATGTATTGGAAACTGAAAC+AGG | + | chr2.4:2672958-2672977 | MS.gene89097:CDS | 30.0% | |
| AGAAGAATGTACATGTGTAA+GGG | + | chr2.4:2673534-2673553 | MS.gene89097:CDS | 30.0% | |
| GATTCAGAAAAAAGCAAAAC+CGG | + | chr2.4:2672895-2672914 | MS.gene89097:CDS | 30.0% | |
| TTCATGGAAAGCTTCAAATT+CGG | + | chr2.4:2673092-2673111 | MS.gene89097:CDS | 30.0% | |
| ! | AAAAAGCAAAACCGGTTTAT+TGG | + | chr2.4:2672903-2672922 | MS.gene89097:CDS | 30.0% |
| AGGGTATGATCTAGTTGTTA+TGG | + | chr2.4:2673053-2673072 | MS.gene89097:CDS | 35.0% | |
| AGTTTCATACCAGGAATTTC+CGG | + | chr2.4:2672756-2672775 | MS.gene89097:CDS | 35.0% | |
| CAGATGCATTGTTATGGATT+GGG | + | chr2.4:2673649-2673668 | MS.gene89097:CDS | 35.0% | |
| GAAAACCCAGAAAATTTCAC+CGG | + | chr2.4:2673741-2673760 | MS.gene89097:CDS | 35.0% | |
| GAGAAGAATGTACATGTGTA+AGG | + | chr2.4:2673533-2673552 | MS.gene89097:CDS | 35.0% | |
| GGGTATGATCTAGTTGTTAT+GGG | + | chr2.4:2673054-2673073 | MS.gene89097:CDS | 35.0% | |
| TATGATCTAGTTGTTATGGG+AGG | + | chr2.4:2673057-2673076 | MS.gene89097:CDS | 35.0% | |
| TCATGAAAGAATGGTCTATG+TGG | + | chr2.4:2673203-2673222 | MS.gene89097:CDS | 35.0% | |
| TGCATCAGATCATGAAAGAA+TGG | + | chr2.4:2673194-2673213 | MS.gene89097:CDS | 35.0% | |
| TGGAAACTGAAACAGGTATT+TGG | + | chr2.4:2672965-2672984 | MS.gene89097:CDS | 35.0% | |
| TTGAAGCTTTCCATGAATCA+GGG | - | chr2.4:2673089-2673108 | None:intergenic | 35.0% | |
| ! | AGTTGTTGGTGGATATTGTA+CGG | + | chr2.4:2673380-2673399 | MS.gene89097:CDS | 35.0% |
| ! | ATAAGGAATGTTGCTTGTGT+GGG | + | chr2.4:2673618-2673637 | MS.gene89097:CDS | 35.0% |
| ! | TGTAAGATAGTGTTTTGTGC+CGG | + | chr2.4:2673333-2673352 | MS.gene89097:CDS | 35.0% |
| ! | TTTGAAGCTTTCCATGAATC+AGG | - | chr2.4:2673090-2673109 | None:intergenic | 35.0% |
| !! | TGTAGCTTTAGCCAATAAAC+CGG | - | chr2.4:2672917-2672936 | None:intergenic | 35.0% |
| !!! | ACCCTTGTTTTGTCAAATTG+CGG | + | chr2.4:2673026-2673045 | MS.gene89097:CDS | 35.0% |
| AAAAGCAACCAGATTGAACG+TGG | - | chr2.4:2673767-2673786 | None:intergenic | 40.0% | |
| ACCCGCAATTTGACAAAACA+AGG | - | chr2.4:2673031-2673050 | None:intergenic | 40.0% | |
| ATCTAGTTGTTATGGGAGGA+TGG | + | chr2.4:2673061-2673080 | MS.gene89097:CDS | 40.0% | |
| CCCGCAATTTGACAAAACAA+GGG | - | chr2.4:2673030-2673049 | None:intergenic | 40.0% | |
| GATATTGTACGGAGATGCAA+GGG | + | chr2.4:2673391-2673410 | MS.gene89097:CDS | 40.0% | |
| GCACAAGAGAAAAATGTGCA+GGG | - | chr2.4:2673177-2673196 | None:intergenic | 40.0% | |
| GCAGATGCATTGTTATGGAT+TGG | + | chr2.4:2673648-2673667 | MS.gene89097:CDS | 40.0% | |
| GGGTAACCCTTCACTTAATT+CGG | - | chr2.4:2673010-2673029 | None:intergenic | 40.0% | |
| GGGTTTGGAGAACCTTATAT+GGG | + | chr2.4:2673678-2673697 | MS.gene89097:CDS | 40.0% | |
| GGTAACCCTTCACTTAATTC+GGG | - | chr2.4:2673009-2673028 | None:intergenic | 40.0% | |
| TACTCCAAACACCATTCTTC+AGG | - | chr2.4:2673716-2673735 | None:intergenic | 40.0% | |
| TCCAACACAAAGCCCATATA+AGG | - | chr2.4:2673693-2673712 | None:intergenic | 40.0% | |
| TCTAGTTGTTATGGGAGGAT+GGG | + | chr2.4:2673062-2673081 | MS.gene89097:CDS | 40.0% | |
| TGCACAAGAGAAAAATGTGC+AGG | - | chr2.4:2673178-2673197 | None:intergenic | 40.0% | |
| TGCTCAGAAAATCCTAGTCA+CGG | + | chr2.4:2672858-2672877 | MS.gene89097:CDS | 40.0% | |
| TGGGTTTGGAGAACCTTATA+TGG | + | chr2.4:2673677-2673696 | MS.gene89097:CDS | 40.0% | |
| TTGTGTGGATGGTTGTGAAT+TGG | + | chr2.4:2673509-2673528 | MS.gene89097:CDS | 40.0% | |
| TTTGTCAAATTGCGGGTGTA+GGG | + | chr2.4:2673034-2673053 | MS.gene89097:CDS | 40.0% | |
| TTTGTGTTGGACCTGAAGAA+TGG | + | chr2.4:2673702-2673721 | MS.gene89097:CDS | 40.0% | |
| ! | ACCTTATATGGGCTTTGTGT+TGG | + | chr2.4:2673689-2673708 | MS.gene89097:CDS | 40.0% |
| ! | ATTTGGAGCGAGTTACCAAT+GGG | + | chr2.4:2672982-2673001 | MS.gene89097:CDS | 40.0% |
| ! | GATAAGGAATGTTGCTTGTG+TGG | + | chr2.4:2673617-2673636 | MS.gene89097:CDS | 40.0% |
| ! | TATTTGGAGCGAGTTACCAA+TGG | + | chr2.4:2672981-2673000 | MS.gene89097:CDS | 40.0% |
| ! | TTTGGTTCGAGTTTCATACC+AGG | + | chr2.4:2672747-2672766 | MS.gene89097:CDS | 40.0% |
| ! | TTTTGTCAAATTGCGGGTGT+AGG | + | chr2.4:2673033-2673052 | MS.gene89097:CDS | 40.0% |
| !! | TGTTATGGATTGGGTCTAGT+GGG | + | chr2.4:2673658-2673677 | MS.gene89097:CDS | 40.0% |
| !! | TTGTTATGGATTGGGTCTAG+TGG | + | chr2.4:2673657-2673676 | MS.gene89097:CDS | 40.0% |
| !!! | CCCTTGTTTTGTCAAATTGC+GGG | + | chr2.4:2673027-2673046 | MS.gene89097:CDS | 40.0% |
| !!! | CGTTCAATCTGGTTGCTTTT+TGG | + | chr2.4:2673767-2673786 | MS.gene89097:CDS | 40.0% |
| ACGATGTGGCAAATGATGTG+TGG | + | chr2.4:2673274-2673293 | MS.gene89097:CDS | 45.0% | |
| ATGGGACCCGAATTAAGTGA+AGG | + | chr2.4:2673000-2673019 | MS.gene89097:CDS | 45.0% | |
| ATTTGGACTGAACCGTGACT+AGG | - | chr2.4:2672873-2672892 | None:intergenic | 45.0% | |
| CTTGGGCAGATGCATTGTTA+TGG | + | chr2.4:2673643-2673662 | MS.gene89097:CDS | 45.0% | |
| GAAAGAATGGTCTATGTGGC+AGG | + | chr2.4:2673207-2673226 | MS.gene89097:CDS | 45.0% | |
| GCAAACAGAGATTCAAACGC+CGG | + | chr2.4:2672804-2672823 | MS.gene89097:CDS | 45.0% | |
| GCAACATTCCTTATCTCCCT+AGG | - | chr2.4:2673612-2673631 | None:intergenic | 45.0% | |
| GGATATTGTACGGAGATGCA+AGG | + | chr2.4:2673390-2673409 | MS.gene89097:CDS | 45.0% | |
| GTCAGCATTTGCTTACGATG+TGG | + | chr2.4:2673260-2673279 | MS.gene89097:CDS | 45.0% | |
| TCACTTAATTCGGGTCCCAT+TGG | - | chr2.4:2673000-2673019 | None:intergenic | 45.0% | |
| TCTGGCACGATCAAAGTTGT+TGG | + | chr2.4:2673366-2673385 | MS.gene89097:CDS | 45.0% | |
| TGGACCTGAAGAATGGTGTT+TGG | + | chr2.4:2673709-2673728 | MS.gene89097:CDS | 45.0% | |
| TGGGACCCGAATTAAGTGAA+GGG | + | chr2.4:2673001-2673020 | MS.gene89097:CDS | 45.0% | |
| TTCATACCAGGAATTTCCGG+CGG | + | chr2.4:2672759-2672778 | MS.gene89097:CDS | 45.0% | |
| ! | CATGTGTAAGGGTGATGATG+TGG | + | chr2.4:2673545-2673564 | MS.gene89097:CDS | 45.0% |
| !! | AGACATAGCACGAGAGTGTT+TGG | + | chr2.4:2672729-2672748 | MS.gene89097:CDS | 45.0% |
| AGAATGGTCTATGTGGCAGG+AGG | + | chr2.4:2673210-2673229 | MS.gene89097:CDS | 50.0% | |
| ATTGGATGGTGACACGTGGA+AGG | + | chr2.4:2673572-2673591 | MS.gene89097:CDS | 50.0% | |
| CAACCATCCACACAAGTCCT+TGG | - | chr2.4:2673504-2673523 | None:intergenic | 50.0% | |
| CACACAAGTCCTTGGACATG+TGG | - | chr2.4:2673496-2673515 | None:intergenic | 50.0% | |
| CACATGTCCAAGGACTTGTG+TGG | + | chr2.4:2673494-2673513 | MS.gene89097:CDS | 50.0% | |
| CACTCTCGTGCTATGTCTTC+TGG | - | chr2.4:2672727-2672746 | None:intergenic | 50.0% | |
| GGCACGATCAAAGTTGTTGG+TGG | + | chr2.4:2673369-2673388 | MS.gene89097:CDS | 50.0% | |
| TCCAAAAACTCCTCCTCGAC+CGG | - | chr2.4:2673468-2673487 | None:intergenic | 50.0% | |
| TGGATGATGCCACATGTCCA+AGG | + | chr2.4:2673484-2673503 | MS.gene89097:CDS | 50.0% | |
| TGTCCAAGGACTTGTGTGGA+TGG | + | chr2.4:2673498-2673517 | MS.gene89097:CDS | 50.0% | |
| TGTTTGCCACCCTTTGCTCA+CGG | - | chr2.4:2672791-2672810 | None:intergenic | 50.0% | |
| TTATCTGCTACGTGGCGTTG+CGG | + | chr2.4:2673132-2673151 | MS.gene89097:CDS | 50.0% | |
| ! | ACGTGGCCGGTGAAATTTTC+TGG | - | chr2.4:2673750-2673769 | None:intergenic | 50.0% |
| ! | ATGTTGCTTGTGTGGGAGCT+TGG | + | chr2.4:2673625-2673644 | MS.gene89097:CDS | 50.0% |
| ! | CGTGGCCGGTGAAATTTTCT+GGG | - | chr2.4:2673749-2673768 | None:intergenic | 50.0% |
| ! | GATGATGTGGTGGCATTGGA+TGG | + | chr2.4:2673558-2673577 | MS.gene89097:CDS | 50.0% |
| ! | GTGTAAGGGTGATGATGTGG+TGG | + | chr2.4:2673548-2673567 | MS.gene89097:CDS | 50.0% |
| ! | GTGTTTTGTGCCGGAGACAA+TGG | + | chr2.4:2673342-2673361 | MS.gene89097:CDS | 50.0% |
| ! | TGTTGCTTGTGTGGGAGCTT+GGG | + | chr2.4:2673626-2673645 | MS.gene89097:CDS | 50.0% |
| !! | TGGATTGGGTCTAGTGGGTT+TGG | + | chr2.4:2673663-2673682 | MS.gene89097:CDS | 50.0% |
| AAAAATGTGCAGGGCCCACC+AGG | - | chr2.4:2673168-2673187 | None:intergenic | 55.0% | |
| AGGAGTTCGATGTAGCCACG+TGG | + | chr2.4:2673433-2673452 | MS.gene89097:CDS | 55.0% | |
| AGTTCGATGTAGCCACGTGG+AGG | + | chr2.4:2673436-2673455 | MS.gene89097:CDS | 55.0% | |
| GAGCATGACCTGTACTCCTC+CGG | - | chr2.4:2672843-2672862 | None:intergenic | 55.0% | |
| GAGGATGGGACCCTGATTCA+TGG | + | chr2.4:2673076-2673095 | MS.gene89097:CDS | 55.0% | |
| GCAACCAGATTGAACGTGGC+CGG | - | chr2.4:2673763-2673782 | None:intergenic | 55.0% | |
| GCGATTCGAACGTAGTGCTG+AGG | + | chr2.4:2673413-2673432 | MS.gene89097:CDS | 55.0% | |
| GTGGATCCCGCTTCCTGATA+TGG | + | chr2.4:2673293-2673312 | MS.gene89097:CDS | 55.0% | |
| TATCTGCTACGTGGCGTTGC+GGG | + | chr2.4:2673133-2673152 | MS.gene89097:CDS | 55.0% | |
| TCCCTCGCCATATCAGGAAG+CGG | - | chr2.4:2673303-2673322 | None:intergenic | 55.0% | |
| TTCACCGGCCACGTTCAATC+TGG | + | chr2.4:2673756-2673775 | MS.gene89097:CDS | 55.0% | |
| ! | GGGTGATGATGTGGTGGCAT+TGG | + | chr2.4:2673554-2673573 | MS.gene89097:CDS | 55.0% |
| ! | TCCGGTCGAGGAGGAGTTTT+TGG | + | chr2.4:2673464-2673483 | MS.gene89097:CDS | 55.0% |
| ! | TGGCATTGGATGGTGACACG+TGG | + | chr2.4:2673568-2673587 | MS.gene89097:CDS | 55.0% |
| !! | CGAAGGTGCCTAGGGAGATA+AGG | + | chr2.4:2673601-2673620 | MS.gene89097:CDS | 55.0% |
| ATCTGCTACGTGGCGTTGCG+GGG | + | chr2.4:2673134-2673153 | MS.gene89097:CDS | 60.0% | |
| CCCGCTTCCTGATATGGCGA+GGG | + | chr2.4:2673299-2673318 | MS.gene89097:CDS | 60.0% | |
| CCCTCGCCATATCAGGAAGC+GGG | - | chr2.4:2673302-2673321 | None:intergenic | 60.0% | |
| CGATGTAGCCACGTGGAGGT+GGG | + | chr2.4:2673440-2673459 | MS.gene89097:CDS | 60.0% | |
| CGGTAGCCACCGTGAGCAAA+GGG | + | chr2.4:2672779-2672798 | MS.gene89097:CDS | 60.0% | |
| CGTGCCAGAGCCATTGTCTC+CGG | - | chr2.4:2673355-2673374 | None:intergenic | 60.0% | |
| GACCTGTACTCCTCCGGACA+CGG | - | chr2.4:2672837-2672856 | None:intergenic | 60.0% | |
| GATGTAGCCACGTGGAGGTG+GGG | + | chr2.4:2673441-2673460 | MS.gene89097:CDS | 60.0% | |
| GGATGGTGACACGTGGAAGG+TGG | + | chr2.4:2673575-2673594 | MS.gene89097:CDS | 60.0% | |
| TAGCCACCGTGAGCAAAGGG+TGG | + | chr2.4:2672782-2672801 | MS.gene89097:CDS | 60.0% | |
| TCACGCTCCCTCGCCATATC+AGG | - | chr2.4:2673309-2673328 | None:intergenic | 60.0% | |
| TCCCGCTTCCTGATATGGCG+AGG | + | chr2.4:2673298-2673317 | MS.gene89097:CDS | 60.0% | |
| TCGATGTAGCCACGTGGAGG+TGG | + | chr2.4:2673439-2673458 | MS.gene89097:CDS | 60.0% | |
| TGGCTACCGCCGGAAATTCC+TGG | - | chr2.4:2672768-2672787 | None:intergenic | 60.0% | |
| TGGTGACACGTGGAAGGTGG+TGG | + | chr2.4:2673578-2673597 | MS.gene89097:CDS | 60.0% | |
| TGTGCCGGAGACAATGGCTC+TGG | + | chr2.4:2673348-2673367 | MS.gene89097:CDS | 60.0% | |
| TGTGGCAGGAGGACATGACG+AGG | + | chr2.4:2673221-2673240 | MS.gene89097:CDS | 60.0% | |
| TTGCCACCCTTTGCTCACGG+TGG | - | chr2.4:2672788-2672807 | None:intergenic | 60.0% | |
| CTCCGGACACGGCGAAACTC+CGG | - | chr2.4:2672826-2672845 | None:intergenic | 65.0% | |
| GCAGGGCCCACCAGGCATAT+CGG | - | chr2.4:2673160-2673179 | None:intergenic | 65.0% | |
| GCGGTAGCCACCGTGAGCAA+AGG | + | chr2.4:2672778-2672797 | MS.gene89097:CDS | 65.0% | |
| TTGCTCACGGTGGCTACCGC+CGG | - | chr2.4:2672778-2672797 | None:intergenic | 65.0% | |
| ! | CACGTGGAAGGTGGTGGCGA+AGG | + | chr2.4:2673584-2673603 | MS.gene89097:CDS | 65.0% |
| !! | AGGTGGTGGCGAAGGTGCCT+AGG | + | chr2.4:2673592-2673611 | MS.gene89097:CDS | 65.0% |
| !! | GGTGGTGGCGAAGGTGCCTA+GGG | + | chr2.4:2673593-2673612 | MS.gene89097:CDS | 65.0% |
| AGCCACGTGGAGGTGGGGTC+CGG | + | chr2.4:2673446-2673465 | MS.gene89097:CDS | 70.0% | |
| CGCCGGAGTTTCGCCGTGTC+CGG | + | chr2.4:2672821-2672840 | MS.gene89097:CDS | 70.0% | |
| CGGAGTTTCGCCGTGTCCGG+AGG | + | chr2.4:2672824-2672843 | MS.gene89097:CDS | 70.0% | |
| CGTTGCGGGGCCGATATGCC+TGG | + | chr2.4:2673147-2673166 | MS.gene89097:CDS | 70.0% | |
| GCGGGGCCGATATGCCTGGT+GGG | + | chr2.4:2673151-2673170 | MS.gene89097:CDS | 70.0% | |
| TGCGGGGCCGATATGCCTGG+TGG | + | chr2.4:2673150-2673169 | MS.gene89097:CDS | 70.0% | |
| ! | CGCCGTGTCCGGAGGAGTAC+AGG | + | chr2.4:2672832-2672851 | MS.gene89097:CDS | 70.0% |
| GACCGGACCCCACCTCCACG+TGG | - | chr2.4:2673451-2673470 | None:intergenic | 75.0% | |
| GAGGTGGGGTCCGGTCGAGG+AGG | + | chr2.4:2673455-2673474 | MS.gene89097:CDS | 75.0% | |
| GTGGAGGTGGGGTCCGGTCG+AGG | + | chr2.4:2673452-2673471 | MS.gene89097:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 2672703 | 2673797 | 2672703 | ID=MS.gene89097 |
| chr2.4 | mRNA | 2672703 | 2673797 | 2672703 | ID=MS.gene89097.t1;Parent=MS.gene89097 |
| chr2.4 | exon | 2672703 | 2673797 | 2672703 | ID=MS.gene89097.t1.exon1;Parent=MS.gene89097.t1 |
| chr2.4 | CDS | 2672703 | 2673797 | 2672703 | ID=cds.MS.gene89097.t1;Parent=MS.gene89097.t1 |
| Gene Sequence |
| Protein sequence |
