Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89166.t1 | XP_013444469.1 | 93 | 617 | 20 | 3 | 1 | 594 | 1 | 617 | 0.00E+00 | 1091.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89166.t1 | Q9LZD3 | 34.0 | 568 | 332 | 9 | 41 | 590 | 96 | 638 | 5.5e-83 | 310.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89166.t1 | A0A072TLW3 | 93.0 | 617 | 20 | 3 | 1 | 594 | 1 | 617 | 0.0e+00 | 1091.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049283 | MS.gene89166 | 0.821497 | 3.91E-53 | -1.69E-46 |
MS.gene050414 | MS.gene89166 | 0.820546 | 6.48E-53 | -1.69E-46 |
MS.gene051699 | MS.gene89166 | 0.815128 | 1.08E-51 | -1.69E-46 |
MS.gene054641 | MS.gene89166 | 0.815689 | 8.13E-52 | -1.69E-46 |
MS.gene054892 | MS.gene89166 | 0.80775 | 4.34E-50 | -1.69E-46 |
MS.gene054893 | MS.gene89166 | 0.807638 | 4.58E-50 | -1.69E-46 |
MS.gene05539 | MS.gene89166 | 0.804191 | 2.43E-49 | -1.69E-46 |
MS.gene058159 | MS.gene89166 | 0.80792 | 3.99E-50 | -1.69E-46 |
MS.gene058279 | MS.gene89166 | 0.805486 | 1.30E-49 | -1.69E-46 |
MS.gene05952 | MS.gene89166 | 0.811471 | 6.89E-51 | -1.69E-46 |
MS.gene060777 | MS.gene89166 | 0.803818 | 2.91E-49 | -1.69E-46 |
MS.gene060933 | MS.gene89166 | 0.809341 | 1.99E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89166.t1 | MTR_8g021330 | 93.031 | 617 | 20 | 3 | 1 | 594 | 1 | 617 | 0.0 | 1066 |
MS.gene89166.t1 | MTR_4g103540 | 38.042 | 623 | 320 | 16 | 9 | 593 | 98 | 692 | 1.41e-124 | 383 |
MS.gene89166.t1 | MTR_7g013770 | 36.617 | 609 | 307 | 18 | 13 | 582 | 98 | 666 | 1.08e-105 | 333 |
MS.gene89166.t1 | MTR_1g090620 | 34.495 | 574 | 331 | 11 | 41 | 590 | 97 | 649 | 1.14e-103 | 327 |
MS.gene89166.t1 | MTR_5g073450 | 35.714 | 574 | 316 | 16 | 46 | 593 | 98 | 644 | 9.35e-103 | 325 |
MS.gene89166.t1 | MTR_1g057560 | 32.496 | 597 | 355 | 10 | 9 | 590 | 70 | 633 | 1.34e-96 | 308 |
MS.gene89166.t1 | MTR_3g031130 | 36.062 | 452 | 254 | 7 | 161 | 591 | 191 | 628 | 1.43e-90 | 292 |
MS.gene89166.t1 | MTR_3g025900 | 34.549 | 576 | 304 | 16 | 46 | 588 | 79 | 614 | 2.58e-86 | 281 |
MS.gene89166.t1 | MTR_1g117090 | 32.455 | 607 | 324 | 16 | 44 | 593 | 101 | 678 | 4.80e-86 | 281 |
MS.gene89166.t1 | MTR_6g033310 | 34.573 | 457 | 259 | 7 | 167 | 592 | 288 | 735 | 6.99e-85 | 280 |
MS.gene89166.t1 | MTR_7g026630 | 30.835 | 587 | 308 | 15 | 48 | 592 | 130 | 660 | 6.65e-82 | 270 |
MS.gene89166.t1 | MTR_2g096230 | 30.198 | 606 | 329 | 13 | 9 | 582 | 38 | 581 | 5.35e-79 | 261 |
MS.gene89166.t1 | MTR_5g073460 | 33.409 | 443 | 266 | 7 | 161 | 582 | 258 | 692 | 7.62e-78 | 260 |
MS.gene89166.t1 | MTR_1g067480 | 30.392 | 612 | 333 | 16 | 9 | 580 | 42 | 600 | 2.57e-76 | 254 |
MS.gene89166.t1 | MTR_1g067460 | 30.099 | 608 | 341 | 15 | 9 | 580 | 40 | 599 | 1.34e-74 | 249 |
MS.gene89166.t1 | MTR_4g062330 | 29.511 | 593 | 340 | 17 | 11 | 566 | 44 | 595 | 3.39e-67 | 230 |
MS.gene89166.t1 | MTR_5g074130 | 29.330 | 433 | 283 | 13 | 161 | 580 | 251 | 673 | 5.19e-48 | 179 |
MS.gene89166.t1 | MTR_5g073480 | 27.083 | 432 | 224 | 10 | 161 | 571 | 259 | 620 | 5.34e-42 | 160 |
MS.gene89166.t1 | MTR_1g009620 | 23.941 | 543 | 337 | 12 | 98 | 594 | 153 | 665 | 3.00e-36 | 144 |
MS.gene89166.t1 | MTR_5g073620 | 32.012 | 328 | 187 | 7 | 161 | 471 | 287 | 595 | 3.51e-36 | 145 |
MS.gene89166.t1 | MTR_5g073620 | 33.333 | 177 | 112 | 3 | 406 | 582 | 898 | 1068 | 2.06e-20 | 96.3 |
MS.gene89166.t1 | MTR_5g073920 | 25.877 | 456 | 273 | 9 | 160 | 586 | 244 | 663 | 7.94e-36 | 143 |
MS.gene89166.t1 | MTR_1g017910 | 25.935 | 428 | 269 | 12 | 172 | 561 | 251 | 668 | 1.68e-28 | 121 |
MS.gene89166.t1 | MTR_4g008260 | 24.330 | 448 | 281 | 11 | 165 | 581 | 220 | 640 | 5.65e-28 | 119 |
MS.gene89166.t1 | MTR_5g073770 | 36.416 | 173 | 107 | 2 | 161 | 331 | 200 | 371 | 6.50e-26 | 110 |
MS.gene89166.t1 | MTR_5g093530 | 26.203 | 374 | 199 | 11 | 235 | 580 | 246 | 570 | 3.99e-25 | 110 |
MS.gene89166.t1 | MTR_5g073900 | 26.031 | 388 | 222 | 13 | 179 | 548 | 1 | 341 | 6.15e-24 | 103 |
MS.gene89166.t1 | MTR_5g073490 | 33.939 | 165 | 89 | 4 | 417 | 581 | 9 | 153 | 1.71e-22 | 94.7 |
MS.gene89166.t1 | MTR_5g073780 | 33.146 | 178 | 111 | 4 | 406 | 582 | 53 | 223 | 6.23e-22 | 95.1 |
MS.gene89166.t1 | MTR_3g464010 | 30.939 | 181 | 112 | 4 | 403 | 580 | 496 | 666 | 2.72e-21 | 98.6 |
MS.gene89166.t1 | MTR_5g073960 | 33.333 | 159 | 96 | 2 | 161 | 318 | 250 | 399 | 8.56e-20 | 92.8 |
MS.gene89166.t1 | MTR_0229s0040 | 27.461 | 193 | 136 | 3 | 403 | 594 | 31 | 220 | 1.28e-18 | 85.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89166.t1 | AT1G72470 | 63.622 | 624 | 176 | 11 | 9 | 594 | 23 | 633 | 0.0 | 731 |
MS.gene89166.t1 | AT3G14090 | 58.998 | 639 | 199 | 9 | 1 | 592 | 1 | 623 | 0.0 | 674 |
MS.gene89166.t1 | AT1G54090 | 58.411 | 642 | 194 | 11 | 1 | 591 | 1 | 620 | 0.0 | 667 |
MS.gene89166.t1 | AT5G50380 | 39.370 | 635 | 304 | 18 | 9 | 593 | 80 | 683 | 6.57e-125 | 383 |
MS.gene89166.t1 | AT5G52340 | 33.865 | 564 | 331 | 12 | 41 | 590 | 96 | 631 | 1.12e-98 | 313 |
MS.gene89166.t1 | AT3G29400 | 36.394 | 599 | 312 | 17 | 24 | 582 | 78 | 647 | 4.22e-94 | 302 |
MS.gene89166.t1 | AT5G03540 | 37.955 | 440 | 259 | 6 | 163 | 590 | 86 | 523 | 6.06e-92 | 293 |
MS.gene89166.t1 | AT5G03540 | 37.955 | 440 | 259 | 6 | 163 | 590 | 201 | 638 | 3.87e-91 | 294 |
MS.gene89166.t1 | AT5G03540 | 37.955 | 440 | 259 | 6 | 163 | 590 | 227 | 664 | 1.84e-90 | 293 |
MS.gene89166.t1 | AT5G58430 | 33.393 | 563 | 313 | 14 | 46 | 582 | 92 | 618 | 2.42e-90 | 291 |
MS.gene89166.t1 | AT5G13150 | 36.344 | 454 | 259 | 8 | 162 | 591 | 206 | 653 | 1.36e-88 | 288 |
MS.gene89166.t1 | AT2G39380 | 30.643 | 607 | 350 | 13 | 9 | 584 | 46 | 612 | 2.28e-85 | 279 |
MS.gene89166.t1 | AT5G13990 | 32.657 | 591 | 320 | 13 | 41 | 593 | 145 | 695 | 2.45e-80 | 267 |
MS.gene89166.t1 | AT1G07000 | 30.490 | 551 | 322 | 10 | 46 | 581 | 91 | 595 | 1.95e-77 | 257 |
MS.gene89166.t1 | AT3G55150 | 29.016 | 610 | 358 | 14 | 9 | 585 | 46 | 613 | 3.76e-77 | 257 |
MS.gene89166.t1 | AT5G52350 | 33.047 | 466 | 289 | 7 | 123 | 582 | 129 | 577 | 1.05e-76 | 254 |
MS.gene89166.t1 | AT3G09520 | 29.392 | 609 | 346 | 15 | 9 | 580 | 43 | 604 | 2.70e-72 | 244 |
MS.gene89166.t1 | AT5G61010 | 28.670 | 579 | 343 | 13 | 42 | 590 | 96 | 634 | 7.57e-70 | 238 |
MS.gene89166.t1 | AT5G61010 | 28.670 | 579 | 343 | 13 | 42 | 590 | 96 | 634 | 7.57e-70 | 238 |
MS.gene89166.t1 | AT1G07725 | 30.519 | 462 | 252 | 11 | 166 | 590 | 174 | 603 | 5.62e-67 | 229 |
MS.gene89166.t1 | AT2G28640 | 28.744 | 581 | 316 | 18 | 37 | 582 | 61 | 578 | 1.19e-66 | 228 |
MS.gene89166.t1 | AT5G59730 | 30.464 | 453 | 261 | 12 | 166 | 582 | 164 | 598 | 5.66e-61 | 214 |
MS.gene89166.t1 | AT5G59730 | 30.464 | 453 | 261 | 12 | 166 | 582 | 164 | 598 | 6.05e-61 | 213 |
MS.gene89166.t1 | AT2G28650 | 31.068 | 412 | 254 | 8 | 172 | 567 | 152 | 549 | 1.61e-54 | 195 |
MS.gene89166.t1 | AT4G31540 | 23.711 | 485 | 323 | 9 | 129 | 585 | 194 | 659 | 7.86e-35 | 140 |
MS.gene89166.t1 | AT3G09530 | 29.394 | 330 | 190 | 8 | 6 | 328 | 35 | 328 | 1.48e-33 | 136 |
MS.gene89166.t1 | AT3G09530 | 30.412 | 194 | 127 | 5 | 396 | 587 | 420 | 607 | 1.33e-23 | 105 |
MS.gene89166.t1 | AT1G51640 | 21.446 | 415 | 300 | 9 | 158 | 551 | 185 | 594 | 3.16e-17 | 85.9 |
Find 149 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTTCTAAGGTTCCTGTTCC+TGG | 0.211046 | 8.1:+78080011 | MS.gene89166:CDS |
TGTATGAGCTTATAGTTTCT+AGG | 0.246738 | 8.1:+78080105 | MS.gene89166:CDS |
TTCGACGGGTTCGAGGTATT+CGG | 0.249759 | 8.1:+78080130 | MS.gene89166:CDS |
CTTTGGCTATTCATTTGATT+TGG | 0.255742 | 8.1:+78080204 | MS.gene89166:CDS |
CGTGAATGTATTCAAGTTTA+CGG | 0.260894 | 8.1:+78079508 | MS.gene89166:CDS |
CGCGGTTGGCTGAGGCTGCC+AGG | 0.270656 | 8.1:+78079949 | MS.gene89166:CDS |
CTTCAAGAGAAGGATCAATT+TGG | 0.271921 | 8.1:-78079237 | None:intergenic |
TGATCTTCATGATGCTTTGA+TGG | 0.286103 | 8.1:+78079849 | MS.gene89166:CDS |
TCGACGGGTTCGAGGTATTC+GGG | 0.288964 | 8.1:+78080131 | MS.gene89166:CDS |
AGATCTGGAGGACGCTGTTT+TGG | 0.301118 | 8.1:+78080730 | MS.gene89166:CDS |
CTGGATGGTGGAGGAGGGTT+TGG | 0.302849 | 8.1:-78079155 | None:intergenic |
CTAAGTCGTCTGAATCCATT+AGG | 0.304582 | 8.1:+78079905 | MS.gene89166:CDS |
GGAGAGGGAGGTGGAGGATA+TGG | 0.306258 | 8.1:-78079119 | None:intergenic |
TGGAGGAGGGTTTGGATGGG+TGG | 0.315708 | 8.1:-78079147 | None:intergenic |
ATCGATTTCGTCGCGGTTTG+TGG | 0.315802 | 8.1:-78079062 | None:intergenic |
TGTTCTTAAGGAGCCTTCTA+AGG | 0.322576 | 8.1:+78079998 | MS.gene89166:CDS |
AGTTCATCAAATTCCATATC+AGG | 0.322962 | 8.1:-78080167 | None:intergenic |
GATCATTCCTTGGTCGGTTC+AGG | 0.328632 | 8.1:+78080654 | MS.gene89166:CDS |
CTTCTCGTGTGCTGCGAAAC+AGG | 0.330201 | 8.1:-78080770 | None:intergenic |
ACCGATCATTTCCCTCAATT+CGG | 0.330878 | 8.1:-78080348 | None:intergenic |
ATTTGAAAATGCTGTTCTTA+AGG | 0.332951 | 8.1:+78079986 | MS.gene89166:CDS |
ATATTGCAATTCAATTTAGA+TGG | 0.340021 | 8.1:+78080236 | MS.gene89166:CDS |
GGGTTTGGATGGGTGGTTAT+CGG | 0.345180 | 8.1:-78079140 | None:intergenic |
GGATCCTTCGACTCCTGATA+TGG | 0.349000 | 8.1:+78080154 | MS.gene89166:CDS |
GATGCCTTCCGCTCTCTATA+TGG | 0.353255 | 8.1:-78080679 | None:intergenic |
GATTATTTGAAGAAGTTAAC+CGG | 0.361629 | 8.1:+78080374 | MS.gene89166:CDS |
CTCAGCCGCCTGAACCCTAA+TGG | 0.371590 | 8.1:-78079920 | None:intergenic |
TAAGTATTCTGTTGAAGATC+TGG | 0.382730 | 8.1:+78080715 | MS.gene89166:CDS |
GTGGTTATCGGAGAGGGAGG+TGG | 0.385268 | 8.1:-78079128 | None:intergenic |
GTCTGAATCCATTAGGGTTC+AGG | 0.389100 | 8.1:+78079912 | MS.gene89166:CDS |
CCGATCATTTCCCTCAATTC+GGG | 0.393033 | 8.1:-78080347 | None:intergenic |
TTAGGGTCTTGTATTGTTTG+AGG | 0.395175 | 8.1:+78080441 | MS.gene89166:CDS |
ATCAGAGAGCAACTTGGGTT+AGG | 0.396008 | 8.1:+78080423 | MS.gene89166:CDS |
CCAGGAACAGGAACCTTAGA+AGG | 0.396965 | 8.1:-78080011 | None:intergenic |
TATATTGTTCAAAAGGTTAG+AGG | 0.398981 | 8.1:+78080320 | MS.gene89166:CDS |
GGCGATCTGGATGGTGGAGG+AGG | 0.402892 | 8.1:-78079161 | None:intergenic |
TAGGGTCTTGTATTGTTTGA+GGG | 0.403053 | 8.1:+78080442 | MS.gene89166:CDS |
TCCTCCCTAAGTTGCGAATC+CGG | 0.409408 | 8.1:-78080590 | None:intergenic |
TTGTATTGTTTGAGGGATGA+AGG | 0.412213 | 8.1:+78080449 | MS.gene89166:CDS |
AGAAGGATCAATTTGGTTGT+TGG | 0.415306 | 8.1:-78079230 | None:intergenic |
TATTGGTGATGTTCAGAGAT+TGG | 0.419067 | 8.1:+78079591 | MS.gene89166:CDS |
TGCATAGGACTCAAGCAGTT+TGG | 0.420561 | 8.1:+78080561 | MS.gene89166:CDS |
AGCAGCCTGTCGAAACTTCC+CGG | 0.427333 | 8.1:-78080393 | None:intergenic |
ATGGTGGAGGAGGGTTTGGA+TGG | 0.429554 | 8.1:-78079151 | None:intergenic |
GAGCGGCTAAGGTTTGTGTT+AGG | 0.429750 | 8.1:+78079653 | MS.gene89166:CDS |
GCGGTTGGCTGAGGCTGCCA+GGG | 0.433225 | 8.1:+78079950 | MS.gene89166:CDS |
CTAAGCGAGCCATGGCGATC+TGG | 0.433397 | 8.1:-78079174 | None:intergenic |
CTAGGCCTTCGACGGGTTCG+AGG | 0.434337 | 8.1:+78080123 | MS.gene89166:CDS |
TGATACCGGATTCGCAACTT+AGG | 0.441191 | 8.1:+78080585 | MS.gene89166:CDS |
TCAGAGAGCAACTTGGGTTA+GGG | 0.441274 | 8.1:+78080424 | MS.gene89166:CDS |
TGAATTGTCCCACCAGGAAC+AGG | 0.441433 | 8.1:-78080023 | None:intergenic |
TGTGCACTATATTGTTCAAA+AGG | 0.442543 | 8.1:+78080313 | MS.gene89166:CDS |
AGCAAATCTTTGATGGGATT+GGG | 0.444484 | 8.1:+78079707 | MS.gene89166:CDS |
CGCAACTTAGGGAGGAGCTT+CGG | 0.445436 | 8.1:+78080597 | MS.gene89166:CDS |
CGGCTGAGATTTGTCGCGGT+TGG | 0.445688 | 8.1:+78079935 | MS.gene89166:CDS |
AGATTTGTCGCGGTTGGCTG+AGG | 0.454510 | 8.1:+78079941 | MS.gene89166:CDS |
AGAATCTTAAACAATTTCTC+AGG | 0.455499 | 8.1:-78079826 | None:intergenic |
TGGGTGGTTATCGGAGAGGG+AGG | 0.456595 | 8.1:-78079131 | None:intergenic |
CGAAGAGTGCTTTGAGGGAA+AGG | 0.460347 | 8.1:+78080507 | MS.gene89166:CDS |
TTATGTGAGCAAATCTTTGA+TGG | 0.462169 | 8.1:+78079700 | MS.gene89166:CDS |
GTTTCTAGAGGGAGATTCTC+TGG | 0.463475 | 8.1:-78078962 | None:intergenic |
GCTGATAGAATGATATCATC+TGG | 0.464722 | 8.1:+78079478 | MS.gene89166:CDS |
TATAGAGAGCGGAAGGCATC+CGG | 0.466340 | 8.1:+78080682 | MS.gene89166:CDS |
TCAAGCAGTTTGGTTGATAC+CGG | 0.468722 | 8.1:+78080571 | MS.gene89166:CDS |
GGATGGGTGGTTATCGGAGA+GGG | 0.473259 | 8.1:-78079134 | None:intergenic |
GGTTGTTGGTGTGTGAGATA+AGG | 0.473341 | 8.1:-78079216 | None:intergenic |
GTTATCGGAGAGGGAGGTGG+AGG | 0.475784 | 8.1:-78079125 | None:intergenic |
GAGCAAATCTTTGATGGGAT+TGG | 0.476761 | 8.1:+78079706 | MS.gene89166:CDS |
TAAGTCGTCTGAATCCATTA+GGG | 0.483851 | 8.1:+78079906 | MS.gene89166:CDS |
TATAGTTTCTAGGCCTTCGA+CGG | 0.484032 | 8.1:+78080115 | MS.gene89166:CDS |
CGTATAGATCATTCCTTGGT+CGG | 0.490510 | 8.1:+78080648 | MS.gene89166:CDS |
GGAGCTTCGGATATCTATAT+CGG | 0.492396 | 8.1:+78080610 | MS.gene89166:CDS |
TGATGTTCAGAGATTGGATT+GGG | 0.493523 | 8.1:+78079597 | MS.gene89166:CDS |
ACTCGAAGGGAAACCACCTT+TGG | 0.494638 | 8.1:+78080187 | MS.gene89166:CDS |
TGGTGGAGGAGGGTTTGGAT+GGG | 0.500642 | 8.1:-78079150 | None:intergenic |
GATACCGGATTCGCAACTTA+GGG | 0.501224 | 8.1:+78080586 | MS.gene89166:CDS |
TGTATTGTTTGAGGGATGAA+GGG | 0.501225 | 8.1:+78080450 | MS.gene89166:CDS |
TTCACGAGCTTCTTCGGAGG+CGG | 0.509475 | 8.1:-78079017 | None:intergenic |
GATAACAGCTACGACGATGA+TGG | 0.509578 | 8.1:+78079307 | MS.gene89166:CDS |
ACTACTAGCTGAACGGTAAG+TGG | 0.510113 | 8.1:-78079401 | None:intergenic |
TAGAGGGTCACCCGAATTGA+GGG | 0.510984 | 8.1:+78080337 | MS.gene89166:CDS |
ATAACAGCTACGACGATGAT+GGG | 0.513637 | 8.1:+78079308 | MS.gene89166:CDS |
CCTGCGTATAGATCATTCCT+TGG | 0.514783 | 8.1:+78080644 | MS.gene89166:CDS |
TATGTGAGCAAATCTTTGAT+GGG | 0.523397 | 8.1:+78079701 | MS.gene89166:CDS |
GAATACTTAATGTAATTCTC+CGG | 0.525224 | 8.1:-78080701 | None:intergenic |
ACGATGGATAAGAGCGGCTA+AGG | 0.526663 | 8.1:+78079642 | MS.gene89166:CDS |
CGACGGGTTCGAGGTATTCG+GGG | 0.527084 | 8.1:+78080132 | MS.gene89166:CDS |
CTAGCTATCAGAGAGCAACT+TGG | 0.528557 | 8.1:+78080417 | MS.gene89166:CDS |
TTAGAGGGTCACCCGAATTG+AGG | 0.532934 | 8.1:+78080336 | MS.gene89166:CDS |
GGATTTCATCAACGGCTTGG+AGG | 0.539301 | 8.1:-78079090 | None:intergenic |
GTTGGATTTCATCAACGGCT+TGG | 0.539759 | 8.1:-78079093 | None:intergenic |
GAAGGGTTGCATTCGAGTGG+TGG | 0.542924 | 8.1:+78080467 | MS.gene89166:CDS |
GGAGCGTTGGATTTCATCAA+CGG | 0.555865 | 8.1:-78079098 | None:intergenic |
TAAGTATCATCTTCAAGAGA+AGG | 0.557557 | 8.1:-78079247 | None:intergenic |
CGGTTGGCTGAGGCTGCCAG+GGG | 0.558857 | 8.1:+78079951 | MS.gene89166:CDS |
GTTAACCGGGAAGTTTCGAC+AGG | 0.559632 | 8.1:+78080388 | MS.gene89166:CDS |
TGTGTCGAAGAGTGCTTTGA+GGG | 0.560985 | 8.1:+78080502 | MS.gene89166:CDS |
GATTTCGTCGCGGTTTGTGG+TGG | 0.561570 | 8.1:-78079059 | None:intergenic |
GCGATCTGGATGGTGGAGGA+GGG | 0.564254 | 8.1:-78079160 | None:intergenic |
GCGAGCCATGGCGATCTGGA+TGG | 0.569502 | 8.1:-78079170 | None:intergenic |
TGGAATTTGATGAACTCGAA+GGG | 0.571767 | 8.1:+78080174 | MS.gene89166:CDS |
CCATGTTTGAGGAGGTGCAT+AGG | 0.575754 | 8.1:+78080546 | MS.gene89166:CDS |
CTCGTCTTCTAAGCGAGCCA+TGG | 0.577030 | 8.1:-78079182 | None:intergenic |
TAGCTATCAGAGAGCAACTT+GGG | 0.577382 | 8.1:+78080418 | MS.gene89166:CDS |
CCTATGCACCTCCTCAAACA+TGG | 0.578200 | 8.1:-78080546 | None:intergenic |
ATGGAATTTGATGAACTCGA+AGG | 0.579968 | 8.1:+78080173 | MS.gene89166:CDS |
ATCAGCAATACATCGAAGAT+CGG | 0.585205 | 8.1:-78079461 | None:intergenic |
AGCCATGGCGATCTGGATGG+TGG | 0.589496 | 8.1:-78079167 | None:intergenic |
ATAGTTTCTAGGCCTTCGAC+GGG | 0.590918 | 8.1:+78080116 | MS.gene89166:CDS |
GTGTGTCGAAGAGTGCTTTG+AGG | 0.592637 | 8.1:+78080501 | MS.gene89166:CDS |
CTGTTTCGCAGCACACGAGA+AGG | 0.593208 | 8.1:+78080771 | MS.gene89166:CDS |
TATGGCTCCTGAACCGACCA+AGG | 0.595571 | 8.1:-78080661 | None:intergenic |
GTGATGTTCAGAGATTGGAT+TGG | 0.598042 | 8.1:+78079596 | MS.gene89166:CDS |
CACGTATACTACTAGCTGAA+CGG | 0.602042 | 8.1:-78079408 | None:intergenic |
ATATTGTTCAAAAGGTTAGA+GGG | 0.602927 | 8.1:+78080321 | MS.gene89166:CDS |
GGTGTTGAGAAGTTGAGTAT+TGG | 0.606513 | 8.1:+78079574 | MS.gene89166:CDS |
TGGATGGGTGGTTATCGGAG+AGG | 0.607438 | 8.1:-78079135 | None:intergenic |
AGGTGGAGGATATGGAGCGT+TGG | 0.609465 | 8.1:-78079111 | None:intergenic |
TTCAAGTTTACGGTAGTGTG+AGG | 0.609746 | 8.1:+78079518 | MS.gene89166:CDS |
CATGGCGATCTGGATGGTGG+AGG | 0.609927 | 8.1:-78079164 | None:intergenic |
CGGAGGCGGTTGAGTCCCAT+CGG | 0.610394 | 8.1:-78079003 | None:intergenic |
GAATACCTCGAACCCGTCGA+AGG | 0.610961 | 8.1:-78080128 | None:intergenic |
GGAGCCATATAGAGAGCGGA+AGG | 0.613579 | 8.1:+78080675 | MS.gene89166:CDS |
AGATCGGTGACTGCTTCAGA+AGG | 0.615546 | 8.1:-78079445 | None:intergenic |
GTATTCTGTTGAAGATCTGG+AGG | 0.617720 | 8.1:+78080718 | MS.gene89166:CDS |
CTCCACCATCCAGATCGCCA+TGG | 0.624970 | 8.1:+78079165 | MS.gene89166:CDS |
CAAATCAAATGAATAGCCAA+AGG | 0.625451 | 8.1:-78080203 | None:intergenic |
AATTCCATATCAGGAGTCGA+AGG | 0.631296 | 8.1:-78080158 | None:intergenic |
TTCAGGAGCCATATAGAGAG+CGG | 0.634754 | 8.1:+78080671 | MS.gene89166:CDS |
GACGGGTTCGAGGTATTCGG+GGG | 0.639781 | 8.1:+78080133 | MS.gene89166:CDS |
ATTATTTGAAGAAGTTAACC+GGG | 0.642168 | 8.1:+78080375 | MS.gene89166:CDS |
CAGGCGGCTGAGATTTGTCG+CGG | 0.642503 | 8.1:+78079931 | MS.gene89166:CDS |
ATCAAATGAATAGCCAAAGG+TGG | 0.642625 | 8.1:-78080200 | None:intergenic |
ACCGGATTCGCAACTTAGGG+AGG | 0.644834 | 8.1:+78080589 | MS.gene89166:CDS |
TGAATCCATTAGGGTTCAGG+CGG | 0.646503 | 8.1:+78079915 | MS.gene89166:CDS |
AAGCGATTAGTATTAGTCGT+AGG | 0.646978 | 8.1:+78079800 | MS.gene89166:CDS |
CCCGAATTGAGGGAAATGAT+CGG | 0.650438 | 8.1:+78080347 | MS.gene89166:CDS |
GATGAAGGGTTGCATTCGAG+TGG | 0.651725 | 8.1:+78080464 | MS.gene89166:CDS |
TAGAGGGAGATTCTCTGGTG+AGG | 0.652277 | 8.1:-78078957 | None:intergenic |
CCAAGGAATGATCTATACGC+AGG | 0.657109 | 8.1:-78080644 | None:intergenic |
AGGCGGTTGAGTCCCATCGG+AGG | 0.657767 | 8.1:-78079000 | None:intergenic |
TAGTGTGAGGAAATCAGCTG+TGG | 0.658643 | 8.1:+78079531 | MS.gene89166:CDS |
AGTGGTAACAGTAGTAGCAA+CGG | 0.666045 | 8.1:-78079374 | None:intergenic |
GGTTGGCTGAGGCTGCCAGG+GGG | 0.680009 | 8.1:+78079952 | MS.gene89166:CDS |
TGAACGGTAAGTGGAAGCAG+TGG | 0.687913 | 8.1:-78079392 | None:intergenic |
TAACAGCTACGACGATGATG+GGG | 0.690580 | 8.1:+78079309 | MS.gene89166:CDS |
TAGAGACGAAGATAAGACGA+TGG | 0.707719 | 8.1:+78079626 | MS.gene89166:CDS |
GATAAGACGATGGATAAGAG+CGG | 0.720593 | 8.1:+78079636 | MS.gene89166:CDS |
GGTAAAGATCGATTTCGTCG+CGG | 0.746661 | 8.1:-78079069 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATTGCAATTCAATTTAGA+TGG | + | chr8.1:78080236-78080255 | MS.gene89166:CDS | 20.0% |
! | AAATTAAAAAGCTGAATAGC+AGG | - | chr8.1:78079775-78079794 | None:intergenic | 25.0% |
! | AGAATCTTAAACAATTTCTC+AGG | - | chr8.1:78079829-78079848 | None:intergenic | 25.0% |
! | ATATTGTTCAAAAGGTTAGA+GGG | + | chr8.1:78080321-78080340 | MS.gene89166:CDS | 25.0% |
! | ATTATTTGAAGAAGTTAACC+GGG | + | chr8.1:78080375-78080394 | MS.gene89166:CDS | 25.0% |
! | ATTTGAAAATGCTGTTCTTA+AGG | + | chr8.1:78079986-78080005 | MS.gene89166:CDS | 25.0% |
! | GAATACTTAATGTAATTCTC+CGG | - | chr8.1:78080704-78080723 | None:intergenic | 25.0% |
! | GATTATTTGAAGAAGTTAAC+CGG | + | chr8.1:78080374-78080393 | MS.gene89166:CDS | 25.0% |
! | TATATTGTTCAAAAGGTTAG+AGG | + | chr8.1:78080320-78080339 | MS.gene89166:CDS | 25.0% |
! | TCAAAAACAACATCAATATC+AGG | - | chr8.1:78079883-78079902 | None:intergenic | 25.0% |
!!! | CTGTTTTGGATTTTTTTGAA+GGG | + | chr8.1:78080744-78080763 | MS.gene89166:CDS | 25.0% |
!!! | TATTGATGATGCTTGTTTTA+TGG | + | chr8.1:78079735-78079754 | MS.gene89166:CDS | 25.0% |
AGTTCATCAAATTCCATATC+AGG | - | chr8.1:78080170-78080189 | None:intergenic | 30.0% | |
CAAATCAAATGAATAGCCAA+AGG | - | chr8.1:78080206-78080225 | None:intergenic | 30.0% | |
CTTTGGCTATTCATTTGATT+TGG | + | chr8.1:78080204-78080223 | MS.gene89166:CDS | 30.0% | |
TAAGTATCATCTTCAAGAGA+AGG | - | chr8.1:78079250-78079269 | None:intergenic | 30.0% | |
TAAGTATTCTGTTGAAGATC+TGG | + | chr8.1:78080715-78080734 | MS.gene89166:CDS | 30.0% | |
TATGTGAGCAAATCTTTGAT+GGG | + | chr8.1:78079701-78079720 | MS.gene89166:CDS | 30.0% | |
TGTATGAGCTTATAGTTTCT+AGG | + | chr8.1:78080105-78080124 | MS.gene89166:CDS | 30.0% | |
TGTGCACTATATTGTTCAAA+AGG | + | chr8.1:78080313-78080332 | MS.gene89166:CDS | 30.0% | |
TTATGTGAGCAAATCTTTGA+TGG | + | chr8.1:78079700-78079719 | MS.gene89166:CDS | 30.0% | |
! | CGTGAATGTATTCAAGTTTA+CGG | + | chr8.1:78079508-78079527 | MS.gene89166:CDS | 30.0% |
!!! | GATTCGAGTTTTAAGAAACT+CGG | + | chr8.1:78079553-78079572 | MS.gene89166:CDS | 30.0% |
!!! | GCTGTTTTGGATTTTTTTGA+AGG | + | chr8.1:78080743-78080762 | MS.gene89166:CDS | 30.0% |
AAATTCAGATAAAATCCCCC+TGG | - | chr8.1:78079970-78079989 | None:intergenic | 35.0% | |
AAGCGATTAGTATTAGTCGT+AGG | + | chr8.1:78079800-78079819 | MS.gene89166:CDS | 35.0% | |
AGAAGGATCAATTTGGTTGT+TGG | - | chr8.1:78079233-78079252 | None:intergenic | 35.0% | |
AGCAAATCTTTGATGGGATT+GGG | + | chr8.1:78079707-78079726 | MS.gene89166:CDS | 35.0% | |
ATCAAATGAATAGCCAAAGG+TGG | - | chr8.1:78080203-78080222 | None:intergenic | 35.0% | |
ATCAGCAATACATCGAAGAT+CGG | - | chr8.1:78079464-78079483 | None:intergenic | 35.0% | |
ATGGAATTTGATGAACTCGA+AGG | + | chr8.1:78080173-78080192 | MS.gene89166:CDS | 35.0% | |
CTTCAAGAGAAGGATCAATT+TGG | - | chr8.1:78079240-78079259 | None:intergenic | 35.0% | |
GCTGATAGAATGATATCATC+TGG | + | chr8.1:78079478-78079497 | MS.gene89166:CDS | 35.0% | |
TAAGTCGTCTGAATCCATTA+GGG | + | chr8.1:78079906-78079925 | MS.gene89166:CDS | 35.0% | |
TCAAAAAATCATCCTCCGAT+GGG | + | chr8.1:78078988-78079007 | MS.gene89166:CDS | 35.0% | |
TGATCTTCATGATGCTTTGA+TGG | + | chr8.1:78079849-78079868 | MS.gene89166:CDS | 35.0% | |
TGATGTTCAGAGATTGGATT+GGG | + | chr8.1:78079597-78079616 | MS.gene89166:CDS | 35.0% | |
TGGAATTTGATGAACTCGAA+GGG | + | chr8.1:78080174-78080193 | MS.gene89166:CDS | 35.0% | |
TGTATTGTTTGAGGGATGAA+GGG | + | chr8.1:78080450-78080469 | MS.gene89166:CDS | 35.0% | |
TTCATCACATACCTAGTCAA+AGG | - | chr8.1:78080050-78080069 | None:intergenic | 35.0% | |
TTGTATTGTTTGAGGGATGA+AGG | + | chr8.1:78080449-78080468 | MS.gene89166:CDS | 35.0% | |
! | AGCTTTTAATGCCATGTTTG+AGG | + | chr8.1:78080535-78080554 | MS.gene89166:CDS | 35.0% |
! | TAGGGTCTTGTATTGTTTGA+GGG | + | chr8.1:78080442-78080461 | MS.gene89166:CDS | 35.0% |
! | TTAGGGTCTTGTATTGTTTG+AGG | + | chr8.1:78080441-78080460 | MS.gene89166:CDS | 35.0% |
! | TTTTAATGCCATGTTTGAGG+AGG | + | chr8.1:78080538-78080557 | MS.gene89166:CDS | 35.0% |
!! | TATTGGTGATGTTCAGAGAT+TGG | + | chr8.1:78079591-78079610 | MS.gene89166:CDS | 35.0% |
!!! | ATTTTTTGAGCGGTTTCTAG+AGG | - | chr8.1:78078977-78078996 | None:intergenic | 35.0% |
!!! | CATTTTTTCACGAGCTTCTT+CGG | - | chr8.1:78079026-78079045 | None:intergenic | 35.0% |
!!! | TGATGCTTGTTTTATGGAGA+CGG | + | chr8.1:78079741-78079760 | MS.gene89166:CDS | 35.0% |
!!! | TTTTTTGAGCGGTTTCTAGA+GGG | - | chr8.1:78078976-78078995 | None:intergenic | 35.0% |
AATTCCATATCAGGAGTCGA+AGG | - | chr8.1:78080161-78080180 | None:intergenic | 40.0% | |
ACCGATCATTTCCCTCAATT+CGG | - | chr8.1:78080351-78080370 | None:intergenic | 40.0% | |
AGTGGTAACAGTAGTAGCAA+CGG | - | chr8.1:78079377-78079396 | None:intergenic | 40.0% | |
ATAACAGCTACGACGATGAT+GGG | + | chr8.1:78079308-78079327 | MS.gene89166:CDS | 40.0% | |
CACGTATACTACTAGCTGAA+CGG | - | chr8.1:78079411-78079430 | None:intergenic | 40.0% | |
CGTATAGATCATTCCTTGGT+CGG | + | chr8.1:78080648-78080667 | MS.gene89166:CDS | 40.0% | |
CTAAGTCGTCTGAATCCATT+AGG | + | chr8.1:78079905-78079924 | MS.gene89166:CDS | 40.0% | |
CTCAAAAAATCATCCTCCGA+TGG | + | chr8.1:78078987-78079006 | MS.gene89166:CDS | 40.0% | |
GAGCAAATCTTTGATGGGAT+TGG | + | chr8.1:78079706-78079725 | MS.gene89166:CDS | 40.0% | |
GATAAGACGATGGATAAGAG+CGG | + | chr8.1:78079636-78079655 | MS.gene89166:CDS | 40.0% | |
GGACAATTCATCCTTTGACT+AGG | + | chr8.1:78080036-78080055 | MS.gene89166:intron | 40.0% | |
GGAGCTTCGGATATCTATAT+CGG | + | chr8.1:78080610-78080629 | MS.gene89166:CDS | 40.0% | |
GTATTCTGTTGAAGATCTGG+AGG | + | chr8.1:78080718-78080737 | MS.gene89166:CDS | 40.0% | |
GTGATGTTCAGAGATTGGAT+TGG | + | chr8.1:78079596-78079615 | MS.gene89166:CDS | 40.0% | |
TAGAGACGAAGATAAGACGA+TGG | + | chr8.1:78079626-78079645 | MS.gene89166:CDS | 40.0% | |
TAGCTATCAGAGAGCAACTT+GGG | + | chr8.1:78080418-78080437 | MS.gene89166:CDS | 40.0% | |
TGTTCTTAAGGAGCCTTCTA+AGG | + | chr8.1:78079998-78080017 | MS.gene89166:CDS | 40.0% | |
! | GGTGTTGAGAAGTTGAGTAT+TGG | + | chr8.1:78079574-78079593 | MS.gene89166:CDS | 40.0% |
! | GTTTTATGGAGACGGTGAAA+GGG | + | chr8.1:78079749-78079768 | MS.gene89166:CDS | 40.0% |
! | TATAGTTTCTAGGCCTTCGA+CGG | + | chr8.1:78080115-78080134 | MS.gene89166:CDS | 40.0% |
! | TCAAGCAGTTTGGTTGATAC+CGG | + | chr8.1:78080571-78080590 | MS.gene89166:CDS | 40.0% |
! | TGTTTTATGGAGACGGTGAA+AGG | + | chr8.1:78079748-78079767 | MS.gene89166:CDS | 40.0% |
! | TTCAAGTTTACGGTAGTGTG+AGG | + | chr8.1:78079518-78079537 | MS.gene89166:CDS | 40.0% |
!!! | TCGGAGGATGATTTTTTGAG+CGG | - | chr8.1:78078987-78079006 | None:intergenic | 40.0% |
AAAGGATGAATTGTCCCACC+AGG | - | chr8.1:78080032-78080051 | None:intergenic | 45.0% | |
ACTACTAGCTGAACGGTAAG+TGG | - | chr8.1:78079404-78079423 | None:intergenic | 45.0% | |
ATCAGAGAGCAACTTGGGTT+AGG | + | chr8.1:78080423-78080442 | MS.gene89166:CDS | 45.0% | |
CCAAGGAATGATCTATACGC+AGG | - | chr8.1:78080647-78080666 | None:intergenic | 45.0% | |
CCCGAATTGAGGGAAATGAT+CGG | + | chr8.1:78080347-78080366 | MS.gene89166:CDS | 45.0% | |
CCGATCATTTCCCTCAATTC+GGG | - | chr8.1:78080350-78080369 | None:intergenic | 45.0% | |
CCTGCGTATAGATCATTCCT+TGG | + | chr8.1:78080644-78080663 | MS.gene89166:CDS | 45.0% | |
CTAGCTATCAGAGAGCAACT+TGG | + | chr8.1:78080417-78080436 | MS.gene89166:CDS | 45.0% | |
GATAACAGCTACGACGATGA+TGG | + | chr8.1:78079307-78079326 | MS.gene89166:CDS | 45.0% | |
GATACCGGATTCGCAACTTA+GGG | + | chr8.1:78080586-78080605 | MS.gene89166:CDS | 45.0% | |
GGTTGTTGGTGTGTGAGATA+AGG | - | chr8.1:78079219-78079238 | None:intergenic | 45.0% | |
GTCTGAATCCATTAGGGTTC+AGG | + | chr8.1:78079912-78079931 | MS.gene89166:CDS | 45.0% | |
GTTGGATTTCATCAACGGCT+TGG | - | chr8.1:78079096-78079115 | None:intergenic | 45.0% | |
TAACAGCTACGACGATGATG+GGG | + | chr8.1:78079309-78079328 | MS.gene89166:CDS | 45.0% | |
TAGTGTGAGGAAATCAGCTG+TGG | + | chr8.1:78079531-78079550 | MS.gene89166:CDS | 45.0% | |
TCAGAGAGCAACTTGGGTTA+GGG | + | chr8.1:78080424-78080443 | MS.gene89166:CDS | 45.0% | |
TGAATCCATTAGGGTTCAGG+CGG | + | chr8.1:78079915-78079934 | MS.gene89166:CDS | 45.0% | |
TGATACCGGATTCGCAACTT+AGG | + | chr8.1:78080585-78080604 | MS.gene89166:CDS | 45.0% | |
TGCATAGGACTCAAGCAGTT+TGG | + | chr8.1:78080561-78080580 | MS.gene89166:CDS | 45.0% | |
TTCAGGAGCCATATAGAGAG+CGG | + | chr8.1:78080671-78080690 | MS.gene89166:CDS | 45.0% | |
! | ATAGTTTCTAGGCCTTCGAC+GGG | + | chr8.1:78080116-78080135 | MS.gene89166:CDS | 45.0% |
! | GGTAAAGATCGATTTCGTCG+CGG | - | chr8.1:78079072-78079091 | None:intergenic | 45.0% |
! | GTTTCTAGAGGGAGATTCTC+TGG | - | chr8.1:78078965-78078984 | None:intergenic | 45.0% |
! | TTTTTCACGAGCTTCTTCGG+AGG | - | chr8.1:78079023-78079042 | None:intergenic | 45.0% |
!! | GGAGCGTTGGATTTCATCAA+CGG | - | chr8.1:78079101-78079120 | None:intergenic | 45.0% |
!! | TGTGTCGAAGAGTGCTTTGA+GGG | + | chr8.1:78080502-78080521 | MS.gene89166:CDS | 45.0% |
!!! | TCGAGTGGTGGATTTTCTTC+TGG | + | chr8.1:78080479-78080498 | MS.gene89166:CDS | 45.0% |
ACGATGGATAAGAGCGGCTA+AGG | + | chr8.1:78079642-78079661 | MS.gene89166:CDS | 50.0% | |
ACTCGAAGGGAAACCACCTT+TGG | + | chr8.1:78080187-78080206 | MS.gene89166:CDS | 50.0% | |
AGATCGGTGACTGCTTCAGA+AGG | - | chr8.1:78079448-78079467 | None:intergenic | 50.0% | |
CCAGGAACAGGAACCTTAGA+AGG | - | chr8.1:78080014-78080033 | None:intergenic | 50.0% | |
CCTATGCACCTCCTCAAACA+TGG | - | chr8.1:78080549-78080568 | None:intergenic | 50.0% | |
CTAAGGTTCCTGTTCCTGGT+GGG | + | chr8.1:78080015-78080034 | MS.gene89166:intron | 50.0% | |
GAGCGGCTAAGGTTTGTGTT+AGG | + | chr8.1:78079653-78079672 | MS.gene89166:CDS | 50.0% | |
GATGAAGGGTTGCATTCGAG+TGG | + | chr8.1:78080464-78080483 | MS.gene89166:CDS | 50.0% | |
GATGCCTTCCGCTCTCTATA+TGG | - | chr8.1:78080682-78080701 | None:intergenic | 50.0% | |
GGATCCTTCGACTCCTGATA+TGG | + | chr8.1:78080154-78080173 | MS.gene89166:CDS | 50.0% | |
GGGTTTGGATGGGTGGTTAT+CGG | - | chr8.1:78079143-78079162 | None:intergenic | 50.0% | |
GTTAACCGGGAAGTTTCGAC+AGG | + | chr8.1:78080388-78080407 | MS.gene89166:CDS | 50.0% | |
TAGAGGGAGATTCTCTGGTG+AGG | - | chr8.1:78078960-78078979 | None:intergenic | 50.0% | |
TAGAGGGTCACCCGAATTGA+GGG | + | chr8.1:78080337-78080356 | MS.gene89166:CDS | 50.0% | |
TCCTCCCTAAGTTGCGAATC+CGG | - | chr8.1:78080593-78080612 | None:intergenic | 50.0% | |
TGAACGGTAAGTGGAAGCAG+TGG | - | chr8.1:78079395-78079414 | None:intergenic | 50.0% | |
TGAATTGTCCCACCAGGAAC+AGG | - | chr8.1:78080026-78080045 | None:intergenic | 50.0% | |
TTAGAGGGTCACCCGAATTG+AGG | + | chr8.1:78080336-78080355 | MS.gene89166:CDS | 50.0% | |
! | AGATCTGGAGGACGCTGTTT+TGG | + | chr8.1:78080730-78080749 | MS.gene89166:CDS | 50.0% |
! | ATCGATTTCGTCGCGGTTTG+TGG | - | chr8.1:78079065-78079084 | None:intergenic | 50.0% |
! | CCATGTTTGAGGAGGTGCAT+AGG | + | chr8.1:78080546-78080565 | MS.gene89166:CDS | 50.0% |
! | GATCATTCCTTGGTCGGTTC+AGG | + | chr8.1:78080654-78080673 | MS.gene89166:CDS | 50.0% |
! | GGATTTCATCAACGGCTTGG+AGG | - | chr8.1:78079093-78079112 | None:intergenic | 50.0% |
! | TCTAAGGTTCCTGTTCCTGG+TGG | + | chr8.1:78080014-78080033 | MS.gene89166:intron | 50.0% |
! | TTCGACGGGTTCGAGGTATT+CGG | + | chr8.1:78080130-78080149 | MS.gene89166:CDS | 50.0% |
!! | CCTTCTAAGGTTCCTGTTCC+TGG | + | chr8.1:78080011-78080030 | MS.gene89166:CDS | 50.0% |
!! | CGAAGAGTGCTTTGAGGGAA+AGG | + | chr8.1:78080507-78080526 | MS.gene89166:CDS | 50.0% |
!! | GTGTGTCGAAGAGTGCTTTG+AGG | + | chr8.1:78080501-78080520 | MS.gene89166:CDS | 50.0% |
!! | TATAGAGAGCGGAAGGCATC+CGG | + | chr8.1:78080682-78080701 | MS.gene89166:CDS | 50.0% |
ACCGGATTCGCAACTTAGGG+AGG | + | chr8.1:78080589-78080608 | MS.gene89166:CDS | 55.0% | |
AGCAGCCTGTCGAAACTTCC+CGG | - | chr8.1:78080396-78080415 | None:intergenic | 55.0% | |
AGGTGGAGGATATGGAGCGT+TGG | - | chr8.1:78079114-78079133 | None:intergenic | 55.0% | |
CGCAACTTAGGGAGGAGCTT+CGG | + | chr8.1:78080597-78080616 | MS.gene89166:CDS | 55.0% | |
CTCGTCTTCTAAGCGAGCCA+TGG | - | chr8.1:78079185-78079204 | None:intergenic | 55.0% | |
CTGTTTCGCAGCACACGAGA+AGG | + | chr8.1:78080771-78080790 | MS.gene89166:CDS | 55.0% | |
CTTCTCGTGTGCTGCGAAAC+AGG | - | chr8.1:78080773-78080792 | None:intergenic | 55.0% | |
GAAGGGTTGCATTCGAGTGG+TGG | + | chr8.1:78080467-78080486 | MS.gene89166:CDS | 55.0% | |
GAATACCTCGAACCCGTCGA+AGG | - | chr8.1:78080131-78080150 | None:intergenic | 55.0% | |
GATTTCGTCGCGGTTTGTGG+TGG | - | chr8.1:78079062-78079081 | None:intergenic | 55.0% | |
GGAGCCATATAGAGAGCGGA+AGG | + | chr8.1:78080675-78080694 | MS.gene89166:CDS | 55.0% | |
GGATGGGTGGTTATCGGAGA+GGG | - | chr8.1:78079137-78079156 | None:intergenic | 55.0% | |
TATGGCTCCTGAACCGACCA+AGG | - | chr8.1:78080664-78080683 | None:intergenic | 55.0% | |
TGGATGGGTGGTTATCGGAG+AGG | - | chr8.1:78079138-78079157 | None:intergenic | 55.0% | |
TGGTGGAGGAGGGTTTGGAT+GGG | - | chr8.1:78079153-78079172 | None:intergenic | 55.0% | |
TTCACGAGCTTCTTCGGAGG+CGG | - | chr8.1:78079020-78079039 | None:intergenic | 55.0% | |
! | AGATTTGTCGCGGTTGGCTG+AGG | + | chr8.1:78079941-78079960 | MS.gene89166:CDS | 55.0% |
! | ATGGTGGAGGAGGGTTTGGA+TGG | - | chr8.1:78079154-78079173 | None:intergenic | 55.0% |
! | CGCTTTTCGCGAGTGAGAAG+AGG | + | chr8.1:78079677-78079696 | MS.gene89166:CDS | 55.0% |
! | TCGACGGGTTCGAGGTATTC+GGG | + | chr8.1:78080131-78080150 | MS.gene89166:CDS | 55.0% |
AGCCATGGCGATCTGGATGG+TGG | - | chr8.1:78079170-78079189 | None:intergenic | 60.0% | |
CAGGCGGCTGAGATTTGTCG+CGG | + | chr8.1:78079931-78079950 | MS.gene89166:CDS | 60.0% | |
CGGCTGAGATTTGTCGCGGT+TGG | + | chr8.1:78079935-78079954 | MS.gene89166:CDS | 60.0% | |
CTAAGCGAGCCATGGCGATC+TGG | - | chr8.1:78079177-78079196 | None:intergenic | 60.0% | |
CTCAGCCGCCTGAACCCTAA+TGG | - | chr8.1:78079923-78079942 | None:intergenic | 60.0% | |
CTCCACCATCCAGATCGCCA+TGG | + | chr8.1:78079165-78079184 | MS.gene89166:CDS | 60.0% | |
GGAGAGGGAGGTGGAGGATA+TGG | - | chr8.1:78079122-78079141 | None:intergenic | 60.0% | |
GTGGTTATCGGAGAGGGAGG+TGG | - | chr8.1:78079131-78079150 | None:intergenic | 60.0% | |
GTTATCGGAGAGGGAGGTGG+AGG | - | chr8.1:78079128-78079147 | None:intergenic | 60.0% | |
TGGAGGAGGGTTTGGATGGG+TGG | - | chr8.1:78079150-78079169 | None:intergenic | 60.0% | |
TGGGTGGTTATCGGAGAGGG+AGG | - | chr8.1:78079134-78079153 | None:intergenic | 60.0% | |
! | CATGGCGATCTGGATGGTGG+AGG | - | chr8.1:78079167-78079186 | None:intergenic | 60.0% |
! | CGACGGGTTCGAGGTATTCG+GGG | + | chr8.1:78080132-78080151 | MS.gene89166:CDS | 60.0% |
! | GACGGGTTCGAGGTATTCGG+GGG | + | chr8.1:78080133-78080152 | MS.gene89166:CDS | 60.0% |
!! | CTGGATGGTGGAGGAGGGTT+TGG | - | chr8.1:78079158-78079177 | None:intergenic | 60.0% |
!! | GCGATCTGGATGGTGGAGGA+GGG | - | chr8.1:78079163-78079182 | None:intergenic | 60.0% |
AGGCGGTTGAGTCCCATCGG+AGG | - | chr8.1:78079003-78079022 | None:intergenic | 65.0% | |
CGGAGGCGGTTGAGTCCCAT+CGG | - | chr8.1:78079006-78079025 | None:intergenic | 65.0% | |
GCGAGCCATGGCGATCTGGA+TGG | - | chr8.1:78079173-78079192 | None:intergenic | 65.0% | |
! | CTAGGCCTTCGACGGGTTCG+AGG | + | chr8.1:78080123-78080142 | MS.gene89166:CDS | 65.0% |
!! | GGCGATCTGGATGGTGGAGG+AGG | - | chr8.1:78079164-78079183 | None:intergenic | 65.0% |
! | CGGTTGGCTGAGGCTGCCAG+GGG | + | chr8.1:78079951-78079970 | MS.gene89166:CDS | 70.0% |
! | GCGGTTGGCTGAGGCTGCCA+GGG | + | chr8.1:78079950-78079969 | MS.gene89166:CDS | 70.0% |
! | GGTTGGCTGAGGCTGCCAGG+GGG | + | chr8.1:78079952-78079971 | MS.gene89166:CDS | 70.0% |
! | CGCGGTTGGCTGAGGCTGCC+AGG | + | chr8.1:78079949-78079968 | MS.gene89166:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 78078953 | 78080805 | 78078953 | ID=MS.gene89166 |
chr8.1 | mRNA | 78078953 | 78080805 | 78078953 | ID=MS.gene89166.t1;Parent=MS.gene89166 |
chr8.1 | exon | 78078953 | 78080032 | 78078953 | ID=MS.gene89166.t1.exon1;Parent=MS.gene89166.t1 |
chr8.1 | CDS | 78078953 | 78080032 | 78078953 | ID=cds.MS.gene89166.t1;Parent=MS.gene89166.t1 |
chr8.1 | exon | 78080101 | 78080805 | 78080101 | ID=MS.gene89166.t1.exon2;Parent=MS.gene89166.t1 |
chr8.1 | CDS | 78080101 | 78080805 | 78080101 | ID=cds.MS.gene89166.t1;Parent=MS.gene89166.t1 |
Gene Sequence |
Protein sequence |