Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89169.t1 | XP_003616296.2 | 95.6 | 915 | 29 | 2 | 1 | 905 | 1 | 914 | 0.00E+00 | 1637.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89169.t1 | Q8W489 | 46.9 | 924 | 401 | 17 | 10 | 905 | 4 | 865 | 5.8e-201 | 702.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89169.t1 | G7K1Q6 | 95.6 | 915 | 29 | 2 | 1 | 905 | 1 | 914 | 0.0e+00 | 1637.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050301 | MS.gene89169 | 0.814347 | 1.61E-51 | -1.69E-46 |
| MS.gene051860 | MS.gene89169 | 0.863268 | 2.81E-64 | -1.69E-46 |
| MS.gene053836 | MS.gene89169 | 0.804051 | 2.60E-49 | -1.69E-46 |
| MS.gene055604 | MS.gene89169 | 0.802634 | 5.11E-49 | -1.69E-46 |
| MS.gene05811 | MS.gene89169 | 0.836712 | 7.97E-57 | -1.69E-46 |
| MS.gene05907 | MS.gene89169 | 0.807897 | 4.04E-50 | -1.69E-46 |
| MS.gene05984 | MS.gene89169 | 0.81546 | 9.14E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene89169 | MS.gene070761 | PPI |
| MS.gene89169 | MS.gene070758 | PPI |
| MS.gene89169 | MS.gene070760 | PPI |
| MS.gene89169 | MS.gene045436 | PPI |
| MS.gene89169 | MS.gene006731 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89169.t1 | MTR_5g078360 | 96.066 | 915 | 25 | 2 | 1 | 905 | 1 | 914 | 0.0 | 1805 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89169.t1 | AT5G16630 | 52.656 | 847 | 327 | 17 | 82 | 905 | 70 | 865 | 0.0 | 738 |
| MS.gene89169.t1 | AT5G16630 | 52.656 | 847 | 327 | 17 | 82 | 905 | 70 | 865 | 0.0 | 738 |
| MS.gene89169.t1 | AT5G16630 | 48.030 | 660 | 263 | 15 | 18 | 651 | 12 | 617 | 4.45e-168 | 504 |
Find 185 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGAAAATATTAAACTTTA+TGG | 0.039387 | 5.2:-66489776 | MS.gene89169:CDS |
| TCATCCAAAGGGTCCGGTTC+TGG | 0.177286 | 5.2:-66490094 | MS.gene89169:CDS |
| TTGTACTTTCTGAGGCTTAA+TGG | 0.198148 | 5.2:+66489838 | None:intergenic |
| TTTCAGGTTTGTGTCCATTT+TGG | 0.206215 | 5.2:-66492309 | MS.gene89169:intron |
| CACAGCACCCTTGGATATTT+CGG | 0.273593 | 5.2:+66496020 | None:intergenic |
| TTCTCGGAGCCATCTCTCTT+TGG | 0.290930 | 5.2:+66490017 | None:intergenic |
| TTGTGACGATCCTCTTATTC+AGG | 0.293753 | 5.2:-66495337 | MS.gene89169:intron |
| CGATGGGTACATTGATAAAA+AGG | 0.305010 | 5.2:-66495657 | MS.gene89169:CDS |
| CATCCAAAGGGTCCGGTTCT+GGG | 0.310984 | 5.2:-66490093 | MS.gene89169:CDS |
| GGTTCTTGTAAGGGGATCTT+TGG | 0.314568 | 5.2:-66492239 | MS.gene89169:CDS |
| ACATTCAATTCTATTGTCAT+AGG | 0.319019 | 5.2:+66495581 | None:intergenic |
| AACCATACCCATGAGATTAA+AGG | 0.319564 | 5.2:+66494945 | None:intergenic |
| CAACCAGATTAGACCTTTGC+AGG | 0.321421 | 5.2:+66489967 | None:intergenic |
| AGGAAAATATTAAACTTTAT+GGG | 0.334938 | 5.2:-66489775 | MS.gene89169:CDS |
| CACCAGGTACAGTGCACTTA+AGG | 0.338212 | 5.2:-66489182 | MS.gene89169:CDS |
| TGAAAGAGATGTACCTCTTC+AGG | 0.342280 | 5.2:+66494724 | None:intergenic |
| ACCTTTGCAGGATGTTCATT+GGG | 0.351208 | 5.2:+66489979 | None:intergenic |
| GTTTCACTTGTAGCCCTTCT+CGG | 0.353277 | 5.2:+66490001 | None:intergenic |
| AAACCTGCGGGTCACATCTT+TGG | 0.357932 | 5.2:+66491572 | None:intergenic |
| GAGTTTGAGTCAGTACAAAA+TGG | 0.359241 | 5.2:-66495794 | MS.gene89169:CDS |
| GCTGTGAATTTGATTATTGA+TGG | 0.359932 | 5.2:-66491672 | MS.gene89169:CDS |
| AACTTAGAGTCTGGAGCAAC+TGG | 0.361257 | 5.2:-66490400 | MS.gene89169:CDS |
| AGTAGGATCTCCTTTGTATT+GGG | 0.364537 | 5.2:-66491748 | MS.gene89169:CDS |
| CATTGTAGTAGAAATTCTAT+TGG | 0.365967 | 5.2:-66495722 | MS.gene89169:CDS |
| TGACTGCACTACTGATTCTA+AGG | 0.366300 | 5.2:-66489795 | MS.gene89169:CDS |
| ACACAAGTCCTAGGGTAAAC+AGG | 0.374218 | 5.2:+66490054 | None:intergenic |
| CGAGCACATCCCGTCTATAA+TGG | 0.375101 | 5.2:-66489078 | MS.gene89169:CDS |
| ATGCACTGCACCAAGCAAAA+TGG | 0.379004 | 5.2:-66492096 | MS.gene89169:CDS |
| AACCCCAGAACCGGACCCTT+TGG | 0.385660 | 5.2:+66490090 | None:intergenic |
| TTGTCTATCTGATGGTGTCT+AGG | 0.386306 | 5.2:+66488485 | None:intergenic |
| AAGAAAATTTGACAGGAAAG+TGG | 0.387383 | 5.2:-66491707 | MS.gene89169:CDS |
| GACCTTTGCAGGATGTTCAT+TGG | 0.391697 | 5.2:+66489978 | None:intergenic |
| AAGAGATGAAACATCCAAAA+TGG | 0.394134 | 5.2:+66492295 | None:intergenic |
| AATGGCAAGTGGTTCTTGTA+AGG | 0.396138 | 5.2:-66492249 | MS.gene89169:CDS |
| CTCTATGTCCTTTAATCTCA+TGG | 0.396904 | 5.2:-66494953 | MS.gene89169:CDS |
| TGTCTATCTGATGGTGTCTA+GGG | 0.398884 | 5.2:+66488486 | None:intergenic |
| TTGCTTCTGTAGCACTGATT+TGG | 0.404166 | 5.2:+66490353 | None:intergenic |
| AACTGCTGTAGAAATTAGTT+GGG | 0.405492 | 5.2:+66491782 | None:intergenic |
| CAACTGCTGTAGAAATTAGT+TGG | 0.411925 | 5.2:+66491781 | None:intergenic |
| CTCATAAATTAAAGAGGAAA+GGG | 0.413230 | 5.2:-66491965 | MS.gene89169:CDS |
| AAAAGCTGAAGAAAAGAAAA+GGG | 0.417352 | 5.2:-66488684 | MS.gene89169:CDS |
| GCTCTTTCTGTTACAGCAGT+TGG | 0.420890 | 5.2:-66491912 | MS.gene89169:CDS |
| TTTCTATGACATAAAGTGAA+TGG | 0.424779 | 5.2:+66490142 | None:intergenic |
| AAAGTCACCGCACTTTGCTT+TGG | 0.431564 | 5.2:-66494776 | MS.gene89169:CDS |
| AGCGTGGTCAAGTGGATGTC+TGG | 0.433333 | 5.2:-66489221 | MS.gene89169:CDS |
| AAGTAGGATCTCCTTTGTAT+TGG | 0.433396 | 5.2:-66491749 | MS.gene89169:CDS |
| GCTTTGTGACATTTGATAGC+TGG | 0.440998 | 5.2:+66494988 | None:intergenic |
| CAACTAATTTCTACAGCAGT+TGG | 0.443448 | 5.2:-66491780 | MS.gene89169:CDS |
| AATACTATAATTCTTCTACT+TGG | 0.445825 | 5.2:+66488330 | None:intergenic |
| TAATAGTTAACCTGAATAAG+AGG | 0.447865 | 5.2:+66495327 | None:intergenic |
| AAACTATGTGAAAGCTCTCT+TGG | 0.448992 | 5.2:-66492140 | MS.gene89169:CDS |
| AATCTTCCTCACGCGGTGAA+TGG | 0.449667 | 5.2:-66489731 | MS.gene89169:CDS |
| ATATTAAACTTTATGGGAAG+TGG | 0.454726 | 5.2:-66489769 | MS.gene89169:CDS |
| TGTTTCTTTGCAGACGACTC+AGG | 0.455574 | 5.2:+66495554 | None:intergenic |
| GATGACTCAGATTGGGAAGA+TGG | 0.458697 | 5.2:-66495626 | MS.gene89169:CDS |
| CCTGAACAAAACCCCAGAAC+CGG | 0.463014 | 5.2:+66490081 | None:intergenic |
| ACAGTTTGCACACAAGTCCT+AGG | 0.463689 | 5.2:+66490045 | None:intergenic |
| AAGAACTGGATGACTCAGAT+TGG | 0.467692 | 5.2:-66495634 | MS.gene89169:CDS |
| CTCGTGGAAGATTAATAGAC+AGG | 0.467787 | 5.2:-66495362 | MS.gene89169:CDS |
| TGTCGTGTGTGCTGAGTTCA+AGG | 0.468595 | 5.2:-66489052 | MS.gene89169:CDS |
| TCCTCAATAGAGCTCCTTGT+AGG | 0.472613 | 5.2:+66490310 | None:intergenic |
| AATGGTATCTAAGCAAAAGT+TGG | 0.473113 | 5.2:-66492204 | MS.gene89169:CDS |
| GGGATACTTGCTGAAACGTC+TGG | 0.474922 | 5.2:+66488449 | None:intergenic |
| ATTTGAGATGCAGATGGAAA+TGG | 0.481223 | 5.2:-66491934 | MS.gene89169:CDS |
| AATTCAAAACCAACCATAGC+AGG | 0.481589 | 5.2:+66489111 | None:intergenic |
| AACCTTAAGTGCACTGTACC+TGG | 0.487431 | 5.2:+66489180 | None:intergenic |
| CAGGTCACCCTGTTTACCCT+AGG | 0.488850 | 5.2:-66490062 | MS.gene89169:CDS |
| TGCAGTGAAGAAAATTTGAC+AGG | 0.493635 | 5.2:-66491714 | MS.gene89169:CDS |
| CGAAATATCCAAGGGTGCTG+TGG | 0.498356 | 5.2:-66496019 | MS.gene89169:CDS |
| ACCGCGTGAGGAAGATTCAA+TGG | 0.500697 | 5.2:+66489737 | None:intergenic |
| GTGTCAAATGCCACAATTTG+TGG | 0.503111 | 5.2:-66488530 | MS.gene89169:CDS |
| TTCTAAGAGTAAAGTGGGGT+CGG | 0.504591 | 5.2:-66491886 | MS.gene89169:CDS |
| CCACTGAGAAACTTAGAGTC+TGG | 0.508190 | 5.2:-66490409 | MS.gene89169:CDS |
| TAGTAGAAATTCTATTGGAA+AGG | 0.508427 | 5.2:-66495717 | MS.gene89169:CDS |
| GATTCTGCACCTGCTATGGT+TGG | 0.511076 | 5.2:-66489120 | MS.gene89169:CDS |
| TCAAAATCTTGTACTTTCTG+AGG | 0.514663 | 5.2:+66489830 | None:intergenic |
| ACCTGCTGGTTGGTTGGAAG+AGG | 0.515197 | 5.2:+66490256 | None:intergenic |
| AGAACTGGATGACTCAGATT+GGG | 0.516004 | 5.2:-66495633 | MS.gene89169:CDS |
| ATCCAAAGGGTCCGGTTCTG+GGG | 0.516010 | 5.2:-66490092 | MS.gene89169:CDS |
| GATTGATTCTGCACCTGCTA+TGG | 0.516302 | 5.2:-66489124 | MS.gene89169:CDS |
| GTTTCTTTGCAGACGACTCA+GGG | 0.516323 | 5.2:+66495555 | None:intergenic |
| TGTCAGTTATATGTGATTCG+AGG | 0.516683 | 5.2:+66491991 | None:intergenic |
| AGAGTACGAGAGCTTTGATA+AGG | 0.516887 | 5.2:-66488396 | MS.gene89169:CDS |
| TCCTACAAGGAGCTCTATTG+AGG | 0.517013 | 5.2:-66490311 | MS.gene89169:CDS |
| GAGCTTTAAATCTTACAGCC+AGG | 0.517661 | 5.2:-66492680 | MS.gene89169:intron |
| GCCTCTTCCAACCAACCAGC+AGG | 0.519338 | 5.2:-66490257 | MS.gene89169:intron |
| ACAAATCTCATAAATTAAAG+AGG | 0.519546 | 5.2:-66491971 | MS.gene89169:CDS |
| CATCTATTGTAACTCGTCAA+AGG | 0.520989 | 5.2:-66488622 | MS.gene89169:CDS |
| TTACAAGAACCACTTGCCAT+TGG | 0.523955 | 5.2:+66492251 | None:intergenic |
| TCTCATAAATTAAAGAGGAA+AGG | 0.526651 | 5.2:-66491966 | MS.gene89169:CDS |
| TTGCTTTGTTTACTTGCTCG+TGG | 0.528460 | 5.2:-66495378 | MS.gene89169:CDS |
| AGAATCAATCTCTAGCCTCT+TGG | 0.533815 | 5.2:+66489137 | None:intergenic |
| GGATGTTCTAAGAGTAAAGT+GGG | 0.533972 | 5.2:-66491891 | MS.gene89169:CDS |
| ACACATTATCATTCACGCAA+TGG | 0.538138 | 5.2:+66488549 | None:intergenic |
| TATCAAATACTTCATCCAAA+GGG | 0.539111 | 5.2:-66490105 | MS.gene89169:CDS |
| CACGACAATACCATTATAGA+CGG | 0.541024 | 5.2:+66489068 | None:intergenic |
| AATACTTCATCCAAAGGGTC+CGG | 0.542313 | 5.2:-66490100 | MS.gene89169:CDS |
| ATGGCAAGTGGTTCTTGTAA+GGG | 0.544121 | 5.2:-66492248 | MS.gene89169:CDS |
| CATTATAGACGGGATGTGCT+CGG | 0.545650 | 5.2:+66489079 | None:intergenic |
| GCAGTTGGATCTATGAAAGT+AGG | 0.545778 | 5.2:-66491765 | MS.gene89169:CDS |
| TATCACATTTGTCTATCTGA+TGG | 0.547483 | 5.2:+66488477 | None:intergenic |
| GATAGCTGGAGCAAGTGCGC+TGG | 0.548698 | 5.2:+66495002 | None:intergenic |
| ATGACTCAGATTGGGAAGAT+GGG | 0.549098 | 5.2:-66495625 | MS.gene89169:CDS |
| TGGACATCATTTGACACCTC+AGG | 0.549556 | 5.2:+66488569 | None:intergenic |
| TCTAAGAGTAAAGTGGGGTC+GGG | 0.549637 | 5.2:-66491885 | MS.gene89169:CDS |
| CTTTGGTACTTCAACACCAA+TGG | 0.553064 | 5.2:-66492222 | MS.gene89169:CDS |
| GTCTATCTGATGGTGTCTAG+GGG | 0.554794 | 5.2:+66488487 | None:intergenic |
| GAAATATCCAAGGGTGCTGT+GGG | 0.555051 | 5.2:-66496018 | MS.gene89169:CDS |
| TCTTGAATTTGAGATGCAGA+TGG | 0.555803 | 5.2:-66491940 | MS.gene89169:CDS |
| AAGAGAGATGGCTCCGAGAA+GGG | 0.560448 | 5.2:-66490014 | MS.gene89169:CDS |
| AAAGAGAGATGGCTCCGAGA+AGG | 0.562954 | 5.2:-66490015 | MS.gene89169:CDS |
| GAAACTACCTGCTGGTTGGT+TGG | 0.565218 | 5.2:+66490250 | None:intergenic |
| TCTATGTCCTTTAATCTCAT+GGG | 0.565273 | 5.2:-66494952 | MS.gene89169:intron |
| TTACAATAGATGAAAGAAGC+TGG | 0.567774 | 5.2:+66488633 | None:intergenic |
| CTAGAACGAGCGTGGTCAAG+TGG | 0.569265 | 5.2:-66489229 | MS.gene89169:intron |
| AGGACGTTGAGTTAGAAACT+AGG | 0.570154 | 5.2:-66490291 | MS.gene89169:CDS |
| GTATCAAATACTTCATCCAA+AGG | 0.571178 | 5.2:-66490106 | MS.gene89169:CDS |
| GTCTGGAGCAACTGGAGGAG+TGG | 0.572180 | 5.2:-66490392 | MS.gene89169:CDS |
| AGAAAATTTGACAGGAAAGT+GGG | 0.572265 | 5.2:-66491706 | MS.gene89169:CDS |
| CAACGGAAGAAGAGACCCTC+AGG | 0.572902 | 5.2:-66497023 | MS.gene89169:intron |
| CCGAGCTTCTGCTGAAGACA+AGG | 0.575812 | 5.2:-66495525 | MS.gene89169:intron |
| GGACGTTGAGTTAGAAACTA+GGG | 0.577631 | 5.2:-66490290 | MS.gene89169:CDS |
| ATCGTTGACCGAAATATCCA+AGG | 0.579259 | 5.2:-66496028 | MS.gene89169:CDS |
| GCATCGCTTTGTCAACAAAG+AGG | 0.581852 | 5.2:+66488370 | None:intergenic |
| TGGCAAGTGGTTCTTGTAAG+GGG | 0.585661 | 5.2:-66492247 | MS.gene89169:CDS |
| TGCGAAGCGCTTCCTCTGCG+TGG | 0.586768 | 5.2:+66497044 | None:intergenic |
| TGGATGTTCTAAGAGTAAAG+TGG | 0.587047 | 5.2:-66491892 | MS.gene89169:CDS |
| AGAAGACAAGGTTGAAGCCA+TGG | 0.588806 | 5.2:-66491649 | MS.gene89169:CDS |
| GCGAGTTAATTCAACATGGT+GGG | 0.589568 | 5.2:-66490446 | MS.gene89169:CDS |
| TCAGATTGCAGCTTTGTCGG+TGG | 0.591353 | 5.2:-66492712 | MS.gene89169:intron |
| CACAAGTCCTAGGGTAAACA+GGG | 0.591721 | 5.2:+66490055 | None:intergenic |
| GGGCCAAAGATGTGACCCGC+AGG | 0.594785 | 5.2:-66491575 | MS.gene89169:intron |
| AGACGTTTCAGCAAGTATCC+CGG | 0.596230 | 5.2:-66488447 | MS.gene89169:CDS |
| TGTTCTGCATGCAGCAACCA+TGG | 0.597755 | 5.2:+66491632 | None:intergenic |
| GCAGAGGAAGCGCTTCGCAA+CGG | 0.598324 | 5.2:-66497040 | MS.gene89169:CDS |
| CCTTGTCTTCAGCAGAAGCT+CGG | 0.599067 | 5.2:+66495525 | None:intergenic |
| ACTATTCCATTCACCGCGTG+AGG | 0.599144 | 5.2:+66489725 | None:intergenic |
| GATGTTTCATCTCTTAAACC+AGG | 0.600342 | 5.2:-66492287 | MS.gene89169:CDS |
| GGTGAATGGAATAGTTCCTA+AGG | 0.602073 | 5.2:-66489717 | MS.gene89169:intron |
| TATACTTCTGCCCAATACAA+AGG | 0.602473 | 5.2:+66491738 | None:intergenic |
| GATTATTGATGGAGAAGACA+AGG | 0.603317 | 5.2:-66491661 | MS.gene89169:CDS |
| GTCATGTAAGTATAGACGAT+GGG | 0.603982 | 5.2:-66495673 | MS.gene89169:CDS |
| ACAAAATGGAACTCAAGTTG+TGG | 0.604091 | 5.2:-66495780 | MS.gene89169:CDS |
| ATTGGCTGAACTTGTTCACA+AGG | 0.604365 | 5.2:-66495406 | MS.gene89169:CDS |
| GTCACTACTACCACAAATTG+TGG | 0.606528 | 5.2:+66488520 | None:intergenic |
| ACTTGCTGAAACGTCTGGAT+CGG | 0.612960 | 5.2:+66488454 | None:intergenic |
| CTGTTATGACCAAAGAGAGA+TGG | 0.614412 | 5.2:-66490026 | MS.gene89169:CDS |
| ATGAAACAGAAGCTCTTCGT+AGG | 0.615783 | 5.2:-66488661 | MS.gene89169:CDS |
| ACCCAATGAACATCCTGCAA+AGG | 0.617404 | 5.2:-66489980 | MS.gene89169:intron |
| GTCAAACTCACAAACTTCTG+AGG | 0.619706 | 5.2:-66492027 | MS.gene89169:CDS |
| CAGTTTGCACACAAGTCCTA+GGG | 0.621494 | 5.2:+66490046 | None:intergenic |
| ACGACAATACCATTATAGAC+GGG | 0.622990 | 5.2:+66489069 | None:intergenic |
| TGCTGTAGAAATTAGTTGGG+GGG | 0.625544 | 5.2:+66491785 | None:intergenic |
| AGCGAGTTAATTCAACATGG+TGG | 0.628936 | 5.2:-66490447 | MS.gene89169:CDS |
| ACGTGAGGGTAGTCCTGAAG+AGG | 0.633646 | 5.2:-66494737 | MS.gene89169:intron |
| TTAGAGTCTGGAGCAACTGG+AGG | 0.635750 | 5.2:-66490397 | MS.gene89169:CDS |
| ATATTAGGTACTGTATGAAG+TGG | 0.639077 | 5.2:-66490486 | MS.gene89169:intron |
| ATCAGCTTTAGAATTACGTG+AGG | 0.639521 | 5.2:-66494752 | MS.gene89169:CDS |
| ACTGCTGTAGAAATTAGTTG+GGG | 0.640359 | 5.2:+66491783 | None:intergenic |
| TCATAAATTAAAGAGGAAAG+GGG | 0.644539 | 5.2:-66491964 | MS.gene89169:CDS |
| AGAAGAAGAATGCCACGCAG+AGG | 0.646227 | 5.2:-66497056 | None:intergenic |
| TCTGAGAAATGTCTTCCACC+AGG | 0.648250 | 5.2:-66489198 | MS.gene89169:CDS |
| AAACAGAAGCTCTTCGTAGG+TGG | 0.649031 | 5.2:-66488658 | MS.gene89169:CDS |
| GGAAGATGGGACAGTTGCCG+TGG | 0.650172 | 5.2:-66495612 | MS.gene89169:CDS |
| ACCATTGAATCTTCCTCACG+CGG | 0.653369 | 5.2:-66489738 | MS.gene89169:CDS |
| TGTCATAGGATGATCATCCA+CGG | 0.653704 | 5.2:+66495595 | None:intergenic |
| CTGCTACGTCATGCTAACAA+AGG | 0.656476 | 5.2:-66495991 | MS.gene89169:CDS |
| CACAGCGAGTTAATTCAACA+TGG | 0.657556 | 5.2:-66490450 | MS.gene89169:CDS |
| CTACGTCATGCTAACAAAGG+TGG | 0.658054 | 5.2:-66495988 | MS.gene89169:CDS |
| TCGTGGAAGATTAATAGACA+GGG | 0.659551 | 5.2:-66495361 | MS.gene89169:CDS |
| TCGTTGACCGAAATATCCAA+GGG | 0.665933 | 5.2:-66496027 | MS.gene89169:CDS |
| GGTCATGTAAGTATAGACGA+TGG | 0.669620 | 5.2:-66495674 | MS.gene89169:CDS |
| GCGCATATTCTGTTGCCAAG+AGG | 0.670329 | 5.2:-66489152 | MS.gene89169:CDS |
| GTTCAAGGACATACTGCTAG+AGG | 0.671109 | 5.2:-66489037 | MS.gene89169:intron |
| ATTGGTTTAAAAGATTGACC+TGG | 0.673292 | 5.2:+66492269 | None:intergenic |
| CTGCTGTAGAAATTAGTTGG+GGG | 0.681676 | 5.2:+66491784 | None:intergenic |
| GATTCTGCAGATGAGAAATG+TGG | 0.684607 | 5.2:-66495695 | MS.gene89169:CDS |
| CCAGACTCTAAGTTTCTCAG+TGG | 0.685977 | 5.2:+66490409 | None:intergenic |
| TAATAACAGTCTGACACCTG+AGG | 0.691745 | 5.2:-66488585 | MS.gene89169:CDS |
| TTTCTTTGCAGACGACTCAG+GGG | 0.695620 | 5.2:+66495556 | None:intergenic |
| CTTAAGTGCACTGTACCTGG+TGG | 0.700022 | 5.2:+66489183 | None:intergenic |
| TCAGCTTTAGAATTACGTGA+GGG | 0.702528 | 5.2:-66494751 | MS.gene89169:CDS |
| GCTGATGCCAAAGCAAAGTG+CGG | 0.711583 | 5.2:+66494769 | None:intergenic |
| TTGACAAAGCGATGCCAATG+TGG | 0.715315 | 5.2:-66488362 | MS.gene89169:CDS |
| GATGTTCTAAGAGTAAAGTG+GGG | 0.775780 | 5.2:-66491890 | MS.gene89169:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 66488334 | 66497069 | 66488334 | ID=MS.gene89169 |
| chr5.2 | mRNA | 66488334 | 66497069 | 66488334 | ID=MS.gene89169.t1;Parent=MS.gene89169 |
| chr5.2 | exon | 66497024 | 66497069 | 66497024 | ID=MS.gene89169.t1.exon1;Parent=MS.gene89169.t1 |
| chr5.2 | CDS | 66497024 | 66497069 | 66497024 | ID=cds.MS.gene89169.t1;Parent=MS.gene89169.t1 |
| chr5.2 | exon | 66495966 | 66496051 | 66495966 | ID=MS.gene89169.t1.exon2;Parent=MS.gene89169.t1 |
| chr5.2 | CDS | 66495966 | 66496051 | 66495966 | ID=cds.MS.gene89169.t1;Parent=MS.gene89169.t1 |
| chr5.2 | exon | 66495526 | 66495819 | 66495526 | ID=MS.gene89169.t1.exon3;Parent=MS.gene89169.t1 |
| chr5.2 | CDS | 66495526 | 66495819 | 66495526 | ID=cds.MS.gene89169.t1;Parent=MS.gene89169.t1 |
| chr5.2 | exon | 66495338 | 66495430 | 66495338 | ID=MS.gene89169.t1.exon4;Parent=MS.gene89169.t1 |
| chr5.2 | CDS | 66495338 | 66495430 | 66495338 | ID=cds.MS.gene89169.t1;Parent=MS.gene89169.t1 |
| chr5.2 | exon | 66494953 | 66495045 | 66494953 | ID=MS.gene89169.t1.exon5;Parent=MS.gene89169.t1 |
| chr5.2 | CDS | 66494953 | 66495045 | 66494953 | ID=cds.MS.gene89169.t1;Parent=MS.gene89169.t1 |
| chr5.2 | exon | 66494738 | 66494839 | 66494738 | ID=MS.gene89169.t1.exon6;Parent=MS.gene89169.t1 |
| chr5.2 | CDS | 66494738 | 66494839 | 66494738 | ID=cds.MS.gene89169.t1;Parent=MS.gene89169.t1 |
| chr5.2 | exon | 66492681 | 66492730 | 66492681 | ID=MS.gene89169.t1.exon7;Parent=MS.gene89169.t1 |
| chr5.2 | CDS | 66492681 | 66492730 | 66492681 | ID=cds.MS.gene89169.t1;Parent=MS.gene89169.t1 |
| chr5.2 | exon | 66491576 | 66492325 | 66491576 | ID=MS.gene89169.t1.exon8;Parent=MS.gene89169.t1 |
| chr5.2 | CDS | 66491576 | 66492325 | 66491576 | ID=cds.MS.gene89169.t1;Parent=MS.gene89169.t1 |
| chr5.2 | exon | 66490258 | 66490501 | 66490258 | ID=MS.gene89169.t1.exon9;Parent=MS.gene89169.t1 |
| chr5.2 | CDS | 66490258 | 66490501 | 66490258 | ID=cds.MS.gene89169.t1;Parent=MS.gene89169.t1 |
| chr5.2 | exon | 66489981 | 66490175 | 66489981 | ID=MS.gene89169.t1.exon10;Parent=MS.gene89169.t1 |
| chr5.2 | CDS | 66489981 | 66490175 | 66489981 | ID=cds.MS.gene89169.t1;Parent=MS.gene89169.t1 |
| chr5.2 | exon | 66489718 | 66489873 | 66489718 | ID=MS.gene89169.t1.exon11;Parent=MS.gene89169.t1 |
| chr5.2 | CDS | 66489718 | 66489873 | 66489718 | ID=cds.MS.gene89169.t1;Parent=MS.gene89169.t1 |
| chr5.2 | exon | 66489038 | 66489247 | 66489038 | ID=MS.gene89169.t1.exon12;Parent=MS.gene89169.t1 |
| chr5.2 | CDS | 66489038 | 66489247 | 66489038 | ID=cds.MS.gene89169.t1;Parent=MS.gene89169.t1 |
| chr5.2 | exon | 66488334 | 66488732 | 66488334 | ID=MS.gene89169.t1.exon13;Parent=MS.gene89169.t1 |
| chr5.2 | CDS | 66488334 | 66488732 | 66488334 | ID=cds.MS.gene89169.t1;Parent=MS.gene89169.t1 |
| Gene Sequence |
| Protein sequence |
