AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055604


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055604.t1 MTR_4g065040 97.347 490 13 0 1 490 1 490 0.0 985
MS.gene055604.t1 MTR_2g097950 71.488 484 136 2 4 487 20 501 0.0 730
MS.gene055604.t1 MTR_2g097950 65.909 484 128 3 4 487 20 466 0.0 657
MS.gene055604.t1 MTR_8g076480 57.023 477 198 2 9 481 13 486 0.0 575
MS.gene055604.t1 MTR_1g029840 50.638 470 229 1 9 478 20 486 9.76e-170 488
MS.gene055604.t1 MTR_1g029840 50.638 470 229 1 9 478 20 486 5.93e-168 483
MS.gene055604.t1 MTR_8g094600 51.064 470 227 1 9 478 73 539 4.22e-165 478
MS.gene055604.t1 MTR_3g088150 50.426 470 230 1 9 478 22 488 1.92e-164 474
MS.gene055604.t1 MTR_1222s0010 37.600 375 223 5 9 381 9 374 1.71e-72 243
MS.gene055604.t1 MTR_1314s0010 36.047 344 201 5 105 437 1 336 3.90e-65 214
MS.gene055604.t1 MTR_2g034160 29.186 442 269 14 12 424 88 514 2.18e-37 145
MS.gene055604.t1 MTR_3g078490 28.889 450 300 10 13 451 90 530 1.55e-36 142
MS.gene055604.t1 MTR_2g067660 29.882 338 223 10 101 431 178 508 8.07e-36 139
MS.gene055604.t1 MTR_4g106510 28.918 453 289 13 20 451 60 500 1.84e-34 135
MS.gene055604.t1 MTR_3g078550 28.000 450 304 10 13 451 30 470 3.79e-34 134
MS.gene055604.t1 MTR_3g078550 28.000 450 304 10 13 451 60 500 4.51e-34 134
MS.gene055604.t1 MTR_3g078170 29.612 412 266 15 38 438 135 533 4.03e-30 123
MS.gene055604.t1 MTR_8g083530 30.114 352 223 12 99 438 154 494 1.09e-29 122
MS.gene055604.t1 MTR_4g107040 29.318 440 282 17 13 438 111 535 4.81e-29 120
MS.gene055604.t1 MTR_6g086300 31.161 353 218 13 99 438 153 493 1.47e-28 118
MS.gene055604.t1 MTR_6g086300 31.161 353 218 13 99 438 153 493 1.47e-28 118
MS.gene055604.t1 MTR_8g064170 28.467 411 272 14 38 438 134 532 9.96e-28 116
MS.gene055604.t1 MTR_4g020720 62.353 85 30 1 175 259 119 201 6.55e-27 110
MS.gene055604.t1 MTR_6g086340 29.940 334 209 12 104 424 156 477 3.33e-24 105
MS.gene055604.t1 MTR_4g131180 29.063 320 213 10 105 420 158 467 2.91e-22 100
MS.gene055604.t1 MTR_8g064170 27.139 409 248 15 38 438 134 500 4.49e-22 99.4
MS.gene055604.t1 MTR_3g078170 29.217 332 213 14 38 358 135 455 1.95e-21 97.1
MS.gene055604.t1 MTR_8g083520 26.211 351 205 10 99 438 65 372 5.12e-21 95.1
MS.gene055604.t1 MTR_8g083520 26.211 351 205 10 99 438 145 452 1.03e-20 95.1
MS.gene055604.t1 MTR_4g131180 28.296 311 209 9 105 411 158 458 5.12e-20 93.2
MS.gene055604.t1 MTR_4g020710 58.571 70 29 0 293 362 16 85 9.30e-20 85.9
MS.gene055604.t1 MTR_1g014320 26.959 319 221 7 105 420 158 467 2.84e-19 90.9
MS.gene055604.t1 MTR_3g078490 30.882 272 180 5 13 281 60 326 3.92e-19 89.4
MS.gene055604.t1 MTR_4g093170 26.462 359 229 11 102 440 174 517 5.39e-18 87.0
MS.gene055604.t1 MTR_2g009750 26.257 358 231 10 102 440 147 490 3.86e-17 84.3
MS.gene055604.t1 MTR_2g009750 26.257 358 230 10 102 440 147 489 5.36e-17 84.0
MS.gene055604.t1 MTR_2g009750 26.257 358 230 10 102 440 146 488 5.68e-17 84.0
MS.gene055604.t1 MTR_3g078170 29.043 303 195 13 38 330 135 427 1.30e-16 82.4
MS.gene055604.t1 MTR_3g078170 29.043 303 195 13 38 330 135 427 1.35e-16 82.4
MS.gene055604.t1 MTR_2g042330 25.496 353 242 11 102 444 152 493 6.23e-16 80.5
MS.gene055604.t1 MTR_8g083530 36.111 180 99 8 104 273 159 332 3.55e-15 77.4
MS.gene055604.t1 MTR_1690s0010 30.476 210 126 9 105 304 146 345 4.17e-14 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055604.t1 AT4G36250 54.105 475 218 0 7 481 10 484 0.0 559
MS.gene055604.t1 AT1G44170 50.417 480 234 2 1 479 7 483 3.80e-169 486
MS.gene055604.t1 AT1G44170 50.417 480 234 2 1 479 7 483 3.80e-169 486
MS.gene055604.t1 AT4G34240 51.059 472 228 1 12 483 82 550 2.73e-163 473
MS.gene055604.t1 AT4G34240 51.059 472 228 1 12 483 67 535 2.87e-163 473
MS.gene055604.t1 AT1G44170 52.530 415 194 1 65 479 9 420 1.87e-157 454
MS.gene055604.t1 AT4G34240 51.951 410 194 1 74 483 2 408 1.14e-146 426
MS.gene055604.t1 AT4G34240 52.885 312 144 1 12 323 82 390 3.09e-101 309
MS.gene055604.t1 AT3G66658 26.767 467 313 10 20 462 96 557 1.26e-38 149
MS.gene055604.t1 AT3G66658 27.149 442 298 9 20 442 96 532 1.27e-38 148
MS.gene055604.t1 AT1G74920 28.966 435 291 11 27 451 69 495 1.55e-38 147
MS.gene055604.t1 AT1G74920 28.966 435 291 11 27 451 74 500 1.92e-38 147
MS.gene055604.t1 AT1G79440 29.970 337 224 9 101 431 184 514 9.82e-37 142
MS.gene055604.t1 AT3G48170 27.500 440 291 12 27 451 74 500 1.19e-34 136
MS.gene055604.t1 AT1G23800 27.397 438 293 14 13 438 101 525 7.10e-29 120
MS.gene055604.t1 AT3G48000 29.310 348 225 9 102 438 192 529 3.20e-27 115
MS.gene055604.t1 AT3G24503 27.299 348 232 12 102 438 155 492 7.96e-25 107
MS.gene055604.t1 AT2G24270 27.586 319 219 7 105 420 198 507 1.02e-22 101
MS.gene055604.t1 AT2G24270 27.003 337 234 7 105 438 158 485 1.84e-22 100
MS.gene055604.t1 AT2G24270 27.003 337 234 7 105 438 158 485 1.89e-22 100
MS.gene055604.t1 AT2G24270 27.003 337 234 7 105 438 158 485 1.89e-22 100
MS.gene055604.t1 AT1G54100 24.432 352 241 10 105 444 154 492 4.48e-18 87.4
MS.gene055604.t1 AT1G54100 24.432 352 241 10 105 444 154 492 4.48e-18 87.4
MS.gene055604.t1 AT1G23800 29.242 277 175 12 13 279 101 366 2.90e-13 72.0
MS.gene055604.t1 AT2G14170 23.007 439 298 12 26 440 167 589 1.20e-11 67.4
MS.gene055604.t1 AT2G14170 23.059 438 299 12 26 440 58 480 1.23e-11 67.4

Find 104 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTATAATTATGATTATT+TGG 0.060046 4.3:-38932170 MS.gene055604:CDS
ACACTTTAATGCGAGATTTA+AGG 0.163652 4.3:+38934680 None:intergenic
ATGGCCCTCATGCAAGATTT+AGG 0.175581 4.3:-38937082 MS.gene055604:CDS
GGATTGGTCCTTGTTATTCT+TGG 0.192443 4.3:-38932148 MS.gene055604:CDS
CGGATTCTTGTGGGAAAATA+TGG 0.217738 4.3:-38933332 MS.gene055604:CDS
TGGACTCACTTTCATCTTCT+TGG 0.243109 4.3:-38933688 MS.gene055604:CDS
TGGAGAGAATCACAACTAAA+AGG 0.259745 4.3:-38937145 MS.gene055604:CDS
GTTCAAGAATCTGTTGTTTA+TGG 0.261717 4.3:-38933027 MS.gene055604:CDS
ATGAAACTTACAGTAATAAT+TGG 0.278416 4.3:+38932819 None:intergenic
TTCATCTTCTTGGGATTTAG+AGG 0.286545 4.3:-38933678 MS.gene055604:intron
CCACCCAACTCCAGTGTTAC+AGG 0.297157 4.3:+38933728 None:intergenic
AAAGAGTTGCTGTTCAAAAT+TGG 0.306469 4.3:-38933261 MS.gene055604:intron
GGAGTAGGTGGAAGTGGATT+TGG 0.307069 4.3:-38932322 MS.gene055604:CDS
TCTTATAATTATGATTATTT+GGG 0.326416 4.3:-38932169 MS.gene055604:CDS
TGGCCCTCATGCAAGATTTA+GGG 0.327127 4.3:-38937081 MS.gene055604:CDS
TCATTCTGTTCTGCAATGTT+TGG 0.329437 4.3:+38932514 None:intergenic
GGACTCACTTTCATCTTCTT+GGG 0.344626 4.3:-38933687 MS.gene055604:CDS
TGCTGGCATTGCCACTTACT+TGG 0.355077 4.3:-38934141 MS.gene055604:CDS
TCATCTTGGAATTTGCCCTT+TGG 0.381304 4.3:-38934475 MS.gene055604:intron
CTATACTGTTGGAATGTTGT+GGG 0.387518 4.3:+38933109 None:intergenic
CTTGAAAGCAATGCTATTGC+AGG 0.388263 4.3:+38934541 None:intergenic
CATTAAAGTGTCTGAAAGAT+TGG 0.391877 4.3:-38934668 MS.gene055604:CDS
CAGTAATAATTGGAAGTAAT+GGG 0.392841 4.3:+38932829 None:intergenic
ACAGTAATAATTGGAAGTAA+TGG 0.412012 4.3:+38932828 None:intergenic
ATTTATTGAGCCAACAATCT+TGG 0.414711 4.3:-38932898 MS.gene055604:CDS
GCACCTGACCCCTGTAACAC+TGG 0.415048 4.3:-38933738 MS.gene055604:CDS
TATCAAAATAATGGGAACTT+TGG 0.423131 4.3:-38937230 None:intergenic
TAATTATGATTATTTGGGAT+TGG 0.431846 4.3:-38932164 MS.gene055604:CDS
TTGTCTTTGGAGCCACTGAT+AGG 0.437757 4.3:-38934236 MS.gene055604:CDS
GTGTGGATCAAGAAAATGTT+TGG 0.443390 4.3:-38933138 MS.gene055604:CDS
AGAAATTGTTCATGAGCCTC+TGG 0.445976 4.3:-38934515 MS.gene055604:CDS
TTAACTAACAAGGCAAGATC+TGG 0.446747 4.3:+38932104 None:intergenic
TGTTCCTCTCTACTTGCTGC+TGG 0.448123 4.3:-38934158 MS.gene055604:CDS
AAAAGAGAATGATATCTTCA+TGG 0.451423 4.3:-38937101 MS.gene055604:CDS
ACATAAAGGGCAAGAGGCTT+AGG 0.452071 4.3:+38932549 None:intergenic
GCTATACTGTTGGAATGTTG+TGG 0.455815 4.3:+38933108 None:intergenic
GGCTTTATTGTCCAAGTAAG+TGG 0.456241 4.3:+38934130 None:intergenic
TCGTTCTCATTATTTCATCT+TGG 0.461385 4.3:-38934489 MS.gene055604:CDS
GCAGCAGATAGTCTACCATT+TGG 0.464351 4.3:-38932346 MS.gene055604:CDS
AACTATCCTTGCTATACTGT+TGG 0.464585 4.3:+38933098 None:intergenic
ACCCCTGTAACACTGGAGTT+GGG 0.465154 4.3:-38933731 MS.gene055604:CDS
TTTGGAGGAGTAGGTGGAAG+TGG 0.473180 4.3:-38932328 MS.gene055604:CDS
TTATAAGGTGGAATTGATGA+AGG 0.484071 4.3:-38933160 MS.gene055604:intron
CACCCAACTCCAGTGTTACA+GGG 0.484632 4.3:+38933729 None:intergenic
TTTGCAGGTGGAAAAGATTG+AGG 0.485285 4.3:-38932598 MS.gene055604:intron
GAAAGTGAGTCCACTACTGC+CGG 0.487924 4.3:+38933698 None:intergenic
CAAGAATCTGTTGTTTATGG+TGG 0.492315 4.3:-38933024 MS.gene055604:CDS
AGTCTACCATTTGGAGGAGT+AGG 0.493102 4.3:-38932337 MS.gene055604:CDS
ATGATATCTGAAACATCATC+TGG 0.495766 4.3:-38932495 MS.gene055604:CDS
TGGAAAATGCCCGGCAGTAG+TGG 0.497076 4.3:-38933708 MS.gene055604:CDS
ACTCCAGTGTTACAGGGGTC+AGG 0.499908 4.3:+38933735 None:intergenic
AGCAATGCTATTGCAGGTAG+TGG 0.500402 4.3:+38934547 None:intergenic
TGAAACTTATTTGCAGTCCA+TGG 0.501038 4.3:+38932205 None:intergenic
GGAGAGAATCACAACTAAAA+GGG 0.502833 4.3:-38937144 MS.gene055604:CDS
TATTGAGCCAACAATCTTGG+TGG 0.503945 4.3:-38932895 MS.gene055604:CDS
CTGATAGGAGCTATAGCTGC+TGG 0.523994 4.3:-38934221 MS.gene055604:CDS
GGAAAATATGGAACTTGTGC+TGG 0.526806 4.3:-38933320 MS.gene055604:CDS
AACATAATTGCTGCATCAAG+TGG 0.532400 4.3:+38932867 None:intergenic
ACATAATTGCTGCATCAAGT+GGG 0.551926 4.3:+38932868 None:intergenic
GGAGTTGGGTGGAAAATGCC+CGG 0.553278 4.3:-38933717 MS.gene055604:CDS
AAAGCCATTAAAGTTATCCA+AGG 0.553386 4.3:-38934113 MS.gene055604:CDS
AATAATGGGAACTTTGGAGA+TGG 0.556684 4.3:-38937224 None:intergenic
GTGGATTTGGCATGTACCAT+GGG 0.562857 4.3:-38932309 MS.gene055604:CDS
CTTCCACCTACTCCTCCAAA+TGG 0.564341 4.3:+38932331 None:intergenic
GCTGTGAAGCGGATTCTTGT+GGG 0.566075 4.3:-38933341 MS.gene055604:CDS
GACCCCTGTAACACTGGAGT+TGG 0.566126 4.3:-38933732 MS.gene055604:CDS
AAATAAGTTTCAACTACTTG+AGG 0.566706 4.3:-38932194 MS.gene055604:CDS
GGCTGTGAAGCGGATTCTTG+TGG 0.568763 4.3:-38933342 MS.gene055604:CDS
GTATTGAATTCATAAGCTCT+AGG 0.568775 4.3:-38932572 MS.gene055604:CDS
CTACCATTTGGAGGAGTAGG+TGG 0.572073 4.3:-38932334 MS.gene055604:CDS
GCAGATAGTCTACCATTTGG+AGG 0.579701 4.3:-38932343 MS.gene055604:CDS
GTTTCCCTAAATCTTGCATG+AGG 0.582440 4.3:+38937077 None:intergenic
GCAAGTAGAGAGGAACATGC+AGG 0.584046 4.3:+38934164 None:intergenic
AAGCCATTAAAGTTATCCAA+GGG 0.587506 4.3:-38934112 MS.gene055604:CDS
TTGGTGACTGAATGTGTCAA+AGG 0.587692 4.3:+38932279 None:intergenic
GTGAATACATAAAGGGCAAG+AGG 0.593136 4.3:+38932543 None:intergenic
CATAATTGCTGCATCAAGTG+GGG 0.595257 4.3:+38932869 None:intergenic
AGATTGGATGTCAAGCAAGA+AGG 0.596883 4.3:-38934652 MS.gene055604:intron
AATATCAGGTAGTGCACGAG+TGG 0.599899 4.3:-38933789 MS.gene055604:intron
AGGGTTGCGTCGTTTCCTAG+TGG 0.601929 4.3:-38937125 MS.gene055604:CDS
GAAATTGTTCATGAGCCTCT+GGG 0.609785 4.3:-38934514 MS.gene055604:CDS
AGGTGGAATTGATGAAGGTG+TGG 0.618298 4.3:-38933155 MS.gene055604:CDS
CACCCGCTAATTAACTAACA+AGG 0.618800 4.3:+38932094 None:intergenic
AAAGTGAGTCCACTACTGCC+GGG 0.620454 4.3:+38933699 None:intergenic
CCTGTAACACTGGAGTTGGG+TGG 0.622351 4.3:-38933728 MS.gene055604:CDS
ATATCAGGTAGTGCACGAGT+GGG 0.622510 4.3:-38933788 MS.gene055604:intron
AACATTCCAACAGTATAGCA+AGG 0.624814 4.3:-38933104 MS.gene055604:CDS
AACTTATTTGCAGTCCATGG+TGG 0.626124 4.3:+38932208 None:intergenic
ATTATAAGGTGGCTGTGAAG+CGG 0.627724 4.3:-38933352 MS.gene055604:intron
AATAATTGGTCGGATTCCTG+TGG 0.634417 4.3:+38934086 None:intergenic
GCAGCTATAGCTCCTATCAG+TGG 0.636960 4.3:+38934224 None:intergenic
AGTGGATTTGGCATGTACCA+TGG 0.640616 4.3:-38932310 MS.gene055604:CDS
TTTCCCTAAATCTTGCATGA+GGG 0.641569 4.3:+38937078 None:intergenic
AATGCCAGCAGCAAGTAGAG+AGG 0.641755 4.3:+38934154 None:intergenic
CATGCAGGAGACAACTCTGA+AGG 0.651380 4.3:+38934179 None:intergenic
GCCATTAAAGTTATCCAAGG+GGG 0.659849 4.3:-38934110 MS.gene055604:CDS
ATAATTGCTGCATCAAGTGG+GGG 0.665911 4.3:+38932870 None:intergenic
TTTGGTATAGATATCCACCA+TGG 0.672421 4.3:-38932222 MS.gene055604:CDS
TATCAGGTAGTGCACGAGTG+GGG 0.672922 4.3:-38933787 MS.gene055604:intron
ACCCAACTCCAGTGTTACAG+GGG 0.674549 4.3:+38933730 None:intergenic
AGCCATTAAAGTTATCCAAG+GGG 0.687482 4.3:-38934111 MS.gene055604:CDS
TCTTTAATCCAAGAATAACA+AGG 0.695515 4.3:+38932140 None:intergenic
TGTCAAAGGAGAATTTCCCA+TGG 0.698053 4.3:+38932293 None:intergenic
ATAATGAGAACGACACCCAG+AGG 0.731880 4.3:+38934499 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATTTAGTAATAAATGT+TGG - chr4.3:38934063-38934082 MS.gene055604:CDS 10.0%
!! TCTTATAATTATGATTATTT+GGG - chr4.3:38937159-38937178 MS.gene055604:CDS 10.0%
!! TGAACATTAATAATATAAAT+TGG + chr4.3:38936922-38936941 None:intergenic 10.0%
!!! AATTTATTTATTTTTTGGTA+AGG - chr4.3:38932371-38932390 MS.gene055604:intron 10.0%
!!! TTTATTTTATTTTTATAAGG+TGG - chr4.3:38936156-38936175 MS.gene055604:intron 10.0%
!!! TTTGTATTAAAGTTTTTTTT+TGG - chr4.3:38933129-38933148 MS.gene055604:CDS 10.0%
!! AAATAAGATATATAACAACA+TGG - chr4.3:38932462-38932481 MS.gene055604:intron 15.0%
!! ATAAATAAATAAACTAAGGA+AGG + chr4.3:38936693-38936712 None:intergenic 15.0%
!! CAAAAAATAAATAAATTCCT+TGG + chr4.3:38932368-38932387 None:intergenic 15.0%
!! CTCTTATAATTATGATTATT+TGG - chr4.3:38937158-38937177 MS.gene055604:CDS 15.0%
!! GAAATAATTTACTTTGATAT+AGG - chr4.3:38934756-38934775 MS.gene055604:intron 15.0%
!! TAAAATTTAAACATCACAAA+TGG + chr4.3:38933359-38933378 None:intergenic 15.0%
!! TAAATAAATAAACTAAGGAA+GGG + chr4.3:38936692-38936711 None:intergenic 15.0%
!! TTATTGTAAAAACTAATATC+AGG - chr4.3:38935525-38935544 MS.gene055604:intron 15.0%
!!! ATCATTTCTCAAATTTTATT+TGG + chr4.3:38933496-38933515 None:intergenic 15.0%
!!! ATGGATATCTTTTTTTATAT+AGG + chr4.3:38932492-38932511 None:intergenic 15.0%
!!! CAAGGAATTTATTTATTTTT+TGG - chr4.3:38932366-38932385 MS.gene055604:intron 15.0%
!!! GAAAAGTTAAATCATTTTTA+AGG - chr4.3:38933979-38933998 MS.gene055604:intron 15.0%
!!! TATTTTTCTTAACTTTTTCA+TGG + chr4.3:38932676-38932695 None:intergenic 15.0%
!!! TCATTTCTCAAATTTTATTT+GGG + chr4.3:38933495-38933514 None:intergenic 15.0%
!!! TTGATATATTCTATCTTTTT+TGG + chr4.3:38934274-38934293 None:intergenic 15.0%
!!! TTTTATTAATGGTTACTTTA+TGG + chr4.3:38932511-38932530 None:intergenic 15.0%
!! AATAAATAAATTCCTTGGAT+TGG + chr4.3:38932363-38932382 None:intergenic 20.0%
!! ACAAAAAAATAGAGATTAAC+GGG + chr4.3:38933566-38933585 None:intergenic 20.0%
!! AGAATAACGAAAAAAATTAG+AGG + chr4.3:38935008-38935027 None:intergenic 20.0%
!! AGAGAGATTGTAAAAAAAAA+TGG + chr4.3:38933529-38933548 None:intergenic 20.0%
!! ATGAAACTTACAGTAATAAT+TGG + chr4.3:38936512-38936531 None:intergenic 20.0%
!! ATTCAATTACTAGAAAAAGT+TGG - chr4.3:38934927-38934946 MS.gene055604:intron 20.0%
!! ATTCATTTGATAGAGTATAT+CGG - chr4.3:38934171-38934190 MS.gene055604:CDS 20.0%
!! ATTGATCCATATAGATTATA+TGG + chr4.3:38932590-38932609 None:intergenic 20.0%
!! GACAAAAAAATAGAGATTAA+CGG + chr4.3:38933567-38933586 None:intergenic 20.0%
!! GTAAATTATTTCGTTATTAG+TGG + chr4.3:38934748-38934767 None:intergenic 20.0%
!! GTATATCTCCTAAAAATAAA+CGG - chr4.3:38933741-38933760 MS.gene055604:CDS 20.0%
!! TAAAAATAAACGGAATTTAG+AGG - chr4.3:38933957-38933976 MS.gene055604:intron 20.0%
!! TAAAAATAAACGGTATTTAG+TGG - chr4.3:38933751-38933770 MS.gene055604:CDS 20.0%
!! TATATAATTAACTCACCAAA+GGG + chr4.3:38934871-38934890 None:intergenic 20.0%
!!! ACTAAATACCGTTTATTTTT+AGG + chr4.3:38933752-38933771 None:intergenic 20.0%
!!! AGAATATGAGAGAATATTTT+AGG - chr4.3:38932136-38932155 MS.gene055604:CDS 20.0%
!!! ATATTTGCATAATATTTTGC+AGG - chr4.3:38936715-38936734 MS.gene055604:intron 20.0%
!!! ATTATGTTAGATGAAGTTTT+TGG - chr4.3:38936476-38936495 MS.gene055604:intron 20.0%
!!! ATTTTTTTCACTCTTCTAAT+TGG + chr4.3:38933589-38933608 None:intergenic 20.0%
!!! CATTTCTCAAATTTTATTTG+GGG + chr4.3:38933494-38933513 None:intergenic 20.0%
!!! GTGATGTTTAAATTTTATCT+AGG - chr4.3:38933362-38933381 MS.gene055604:intron 20.0%
!!! TAATTATGATTATTTGGGAT+TGG - chr4.3:38937164-38937183 MS.gene055604:CDS 20.0%
!!! TATGCTTTTACATTTTTTGT+AGG + chr4.3:38934122-38934141 None:intergenic 20.0%
!!! TCTAAATTCCGTTTATTTTT+AGG + chr4.3:38933958-38933977 None:intergenic 20.0%
! AAAAAAATAGAGATTAACGG+GGG + chr4.3:38933564-38933583 None:intergenic 25.0%
! AAAAGAGAATGATATCTTCA+TGG - chr4.3:38932227-38932246 MS.gene055604:CDS 25.0%
! AAATAAGTTTCAACTACTTG+AGG - chr4.3:38937134-38937153 MS.gene055604:CDS 25.0%
! AAATATATAGTAAAACCCGA+TGG + chr4.3:38935852-38935871 None:intergenic 25.0%
! AACCATAACAATAAAAGTGA+CGG + chr4.3:38935924-38935943 None:intergenic 25.0%
! AACGACAAAATACATATATC+CGG - chr4.3:38934368-38934387 MS.gene055604:intron 25.0%
! ACAAAACTATCTAGTTAGTT+AGG - chr4.3:38932439-38932458 MS.gene055604:intron 25.0%
! ACAGTAATAATTGGAAGTAA+TGG + chr4.3:38936503-38936522 None:intergenic 25.0%
! ACCAATTATTACAGCAAAAA+TGG - chr4.3:38935255-38935274 MS.gene055604:intron 25.0%
! ACTAGAAAAAGTTGGAATAA+CGG - chr4.3:38934935-38934954 MS.gene055604:intron 25.0%
! AGTGTTCCATATAATCTATA+TGG - chr4.3:38932581-38932600 MS.gene055604:CDS 25.0%
! ATAACGAAAAAAATTAGAGG+CGG + chr4.3:38935005-38935024 None:intergenic 25.0%
! CAAAAAAATAGAGATTAACG+GGG + chr4.3:38933565-38933584 None:intergenic 25.0%
! CAGTAATAATTGGAAGTAAT+GGG + chr4.3:38936502-38936521 None:intergenic 25.0%
! CCAATTATTACAGCAAAAAT+GGG - chr4.3:38935256-38935275 MS.gene055604:intron 25.0%
! GTATATAATTAACTCACCAA+AGG + chr4.3:38934872-38934891 None:intergenic 25.0%
! GTTAGAGTCTTCATAAATTT+GGG - chr4.3:38935028-38935047 MS.gene055604:intron 25.0%
! TACTAACTTAGAAACCTAAA+AGG + chr4.3:38935822-38935841 None:intergenic 25.0%
! TATATATGGTTTATAGCATG+AGG + chr4.3:38933653-38933672 None:intergenic 25.0%
! TCTTTAATCCAAGAATAACA+AGG + chr4.3:38937191-38937210 None:intergenic 25.0%
! TGTAACCAATAAAAAAACAC+AGG - chr4.3:38935068-38935087 MS.gene055604:intron 25.0%
! TGTTAGAGTCTTCATAAATT+TGG - chr4.3:38935027-38935046 MS.gene055604:intron 25.0%
!!! ACAATCCTGTGTTTTTTTAT+TGG + chr4.3:38935076-38935095 None:intergenic 25.0%
!!! CATAACCAGGTTTTAAATAA+AGG + chr4.3:38935471-38935490 None:intergenic 25.0%
!!! GAAGTTTCTTAACTGATTTT+TGG - chr4.3:38937088-38937107 MS.gene055604:CDS 25.0%
!!! GTTTTATTCTCTATAGATGA+AGG + chr4.3:38932543-38932562 None:intergenic 25.0%
!!! GTTTTGTTTGGTTGTATATA+TGG + chr4.3:38933667-38933686 None:intergenic 25.0%
!!! GTTTTTGGTGAATACATAAA+GGG + chr4.3:38936795-38936814 None:intergenic 25.0%
!!! TCTACTAAAATCGTTTTGTT+TGG + chr4.3:38933851-38933870 None:intergenic 25.0%
!!! TCTCTTAAATTCAAGTTTTC+AGG - chr4.3:38936094-38936113 MS.gene055604:intron 25.0%
!!! TGTCGCTTTAACAAAAATAA+TGG + chr4.3:38932736-38932755 None:intergenic 25.0%
!!! TTCTTCTAACAATTGCTTTT+TGG + chr4.3:38937071-38937090 None:intergenic 25.0%
!!! TTTTTGCTGTAATAATTGGT+CGG + chr4.3:38935255-38935274 None:intergenic 25.0%
!!! TTTTTTGGTGATTGGAATTT+AGG + chr4.3:38936385-38936404 None:intergenic 25.0%
AAAAAACACAGGATTGTCTT+TGG - chr4.3:38935079-38935098 MS.gene055604:intron 30.0%
AAAAAATAGAGATTAACGGG+GGG + chr4.3:38933563-38933582 None:intergenic 30.0%
AAAGCCATTAAAGTTATCCA+AGG - chr4.3:38935215-38935234 MS.gene055604:intron 30.0%
AACAATAAAAGTGACGGTTA+GGG + chr4.3:38935918-38935937 None:intergenic 30.0%
AAGCCATTAAAGTTATCCAA+GGG - chr4.3:38935216-38935235 MS.gene055604:intron 30.0%
AAGTCGCGATGAAAAATATT+TGG + chr4.3:38935311-38935330 None:intergenic 30.0%
AATTAAGACACAGACTTGAT+TGG + chr4.3:38932759-38932778 None:intergenic 30.0%
ACACATATATATGGTTCATG+AGG - chr4.3:38932416-38932435 MS.gene055604:intron 30.0%
ACACTTTAATGCGAGATTTA+AGG + chr4.3:38934651-38934670 None:intergenic 30.0%
AGAGGCGGAAAAAATAAATT+TGG + chr4.3:38934990-38935009 None:intergenic 30.0%
AGGGTTTCATAAGATTACAA+CGG + chr4.3:38935899-38935918 None:intergenic 30.0%
ATTAGCAATGTAACACTTTC+TGG - chr4.3:38935951-38935970 MS.gene055604:intron 30.0%
ATTTATTGAGCCAACAATCT+TGG - chr4.3:38936430-38936449 MS.gene055604:intron 30.0%
ATTTGATAGAGTATATCGGT+AGG - chr4.3:38934175-38934194 MS.gene055604:CDS 30.0%
CAAGTCTGTGTCTTAATTTA+AGG - chr4.3:38932761-38932780 MS.gene055604:intron 30.0%
GAACCATATATATGTGTGTA+CGG + chr4.3:38932413-38932432 None:intergenic 30.0%
GTATTGAATTCATAAGCTCT+AGG - chr4.3:38936756-38936775 MS.gene055604:intron 30.0%
TAACAATAAAAGTGACGGTT+AGG + chr4.3:38935919-38935938 None:intergenic 30.0%
TAACGGCAAAAATTTAGAGA+CGG - chr4.3:38934952-38934971 MS.gene055604:intron 30.0%
TACTAAATCCATTCACAGAT+AGG - chr4.3:38934611-38934630 MS.gene055604:intron 30.0%
TAGAGATAAACAAAGACCAA+GGG + chr4.3:38932937-38932956 None:intergenic 30.0%
TAGGAACATTAGTATGTGAA+AGG + chr4.3:38936366-38936385 None:intergenic 30.0%
TATGGATCAATGCTTGAAAA+TGG - chr4.3:38932599-38932618 MS.gene055604:intron 30.0%
TCGTTCTCATTATTTCATCT+TGG - chr4.3:38934839-38934858 MS.gene055604:intron 30.0%
TTAGAGATAAACAAAGACCA+AGG + chr4.3:38932938-38932957 None:intergenic 30.0%
TTATAAGGTGGAATTGATGA+AGG - chr4.3:38936168-38936187 MS.gene055604:intron 30.0%
TTATGAAGCAGTGCAAATTA+TGG - chr4.3:38935438-38935457 MS.gene055604:intron 30.0%
! AAAGAGTTGCTGTTCAAAAT+TGG - chr4.3:38936067-38936086 MS.gene055604:intron 30.0%
! AACACTTTCTGGTGATTATA+AGG - chr4.3:38935962-38935981 MS.gene055604:intron 30.0%
! ATGATATCTGAAACATCATC+TGG - chr4.3:38936833-38936852 MS.gene055604:intron 30.0%
! CAACCAAACAAAACGATTTT+AGG - chr4.3:38933673-38933692 MS.gene055604:intron 30.0%
! CAGATTTTAAATTGCAGTCA+CGG - chr4.3:38935343-38935362 MS.gene055604:intron 30.0%
! CATTAAAGTGTCTGAAAGAT+TGG - chr4.3:38934660-38934679 MS.gene055604:CDS 30.0%
! GTCTAAAGCAATGATTATTC+CGG + chr4.3:38934390-38934409 None:intergenic 30.0%
! GTTCAAGAATCTGTTGTTTA+TGG - chr4.3:38936301-38936320 MS.gene055604:intron 30.0%
! TAGACATATTTTCCAATCCA+AGG - chr4.3:38932348-38932367 MS.gene055604:CDS 30.0%
! TATCATTCTCTTTTTCCACT+AGG + chr4.3:38932221-38932240 None:intergenic 30.0%
! TATTTTTCATCGCGACTTTT+AGG - chr4.3:38935313-38935332 MS.gene055604:intron 30.0%
! TTTGCATAATATTTTGCAGG+TGG - chr4.3:38936718-38936737 MS.gene055604:intron 30.0%
!! ATGAGAGAATATTTTAGGAG+TGG - chr4.3:38932141-38932160 MS.gene055604:CDS 30.0%
!! CCCATTTTTGCTGTAATAAT+TGG + chr4.3:38935259-38935278 None:intergenic 30.0%
!! GAAAAACAAAAGAAGCATCT+TGG - chr4.3:38932163-38932182 MS.gene055604:CDS 30.0%
!! TCTCCTAAAATCGTTTTGTT+TGG + chr4.3:38933679-38933698 None:intergenic 30.0%
!!! AACCGTCACTTTTATTGTTA+TGG - chr4.3:38935919-38935938 MS.gene055604:intron 30.0%
!!! AATCGTTTTGTTTGGTTGTA+TGG + chr4.3:38933671-38933690 None:intergenic 30.0%
!!! GGTTTTTGGTGAATACATAA+AGG + chr4.3:38936796-38936815 None:intergenic 30.0%
!!! GTGACATTCATGTTTTAATG+TGG - chr4.3:38935371-38935390 MS.gene055604:intron 30.0%
!!! TGGGACAAAATCTTTTTTAC+AGG - chr4.3:38935275-38935294 MS.gene055604:intron 30.0%
AAAAATAGAGATTAACGGGG+GGG + chr4.3:38933562-38933581 None:intergenic 35.0%
AACATAATTGCTGCATCAAG+TGG + chr4.3:38936464-38936483 None:intergenic 35.0%
AACATTAGTATGTGAAAGGC+AGG + chr4.3:38936362-38936381 None:intergenic 35.0%
AACATTCCAACAGTATAGCA+AGG - chr4.3:38936224-38936243 MS.gene055604:intron 35.0%
AAGTTAGTAGTCTAGTCCAT+CGG - chr4.3:38935833-38935852 MS.gene055604:intron 35.0%
ACAACGGCATGACATAATAA+AGG + chr4.3:38935883-38935902 None:intergenic 35.0%
ACATAATTGCTGCATCAAGT+GGG + chr4.3:38936463-38936482 None:intergenic 35.0%
ACATTAGTATGTGAAAGGCA+GGG + chr4.3:38936361-38936380 None:intergenic 35.0%
ACTAGATCGAAGTGATCTAA+CGG - chr4.3:38934450-38934469 MS.gene055604:intron 35.0%
AGCCATTAAAGTTATCCAAG+GGG - chr4.3:38935217-38935236 MS.gene055604:intron 35.0%
ATATGTGTGTACGGATCATT+TGG + chr4.3:38932404-38932423 None:intergenic 35.0%
ATCGAACAAACACCGTTATA+AGG - chr4.3:38934510-38934529 MS.gene055604:CDS 35.0%
CATTTACACGAGAGTAGTTA+GGG - chr4.3:38932888-38932907 MS.gene055604:CDS 35.0%
CTATACTGTTGGAATGTTGT+GGG + chr4.3:38936222-38936241 None:intergenic 35.0%
GACCTATGAATTGAACTTGT+CGG - chr4.3:38932795-38932814 MS.gene055604:intron 35.0%
GATCCGTACACACATATATA+TGG - chr4.3:38932407-38932426 MS.gene055604:intron 35.0%
GGAGAGAATCACAACTAAAA+GGG - chr4.3:38932184-38932203 MS.gene055604:CDS 35.0%
GTGAATAAGTGGAGAATCTT+AGG + chr4.3:38934215-38934234 None:intergenic 35.0%
GTGCATTAACATGTGTGAAA+TGG + chr4.3:38933001-38933020 None:intergenic 35.0%
GTGTGGATCAAGAAAATGTT+TGG - chr4.3:38936190-38936209 MS.gene055604:intron 35.0%
GTTTGTCAAGCAAAGTTATG+CGG + chr4.3:38932915-38932934 None:intergenic 35.0%
TACCTCTAAACGTGAATAAG+TGG + chr4.3:38934226-38934245 None:intergenic 35.0%
TCATTCTGTTCTGCAATGTT+TGG + chr4.3:38936817-38936836 None:intergenic 35.0%
TGAAACTTATTTGCAGTCCA+TGG + chr4.3:38937126-38937145 None:intergenic 35.0%
TGGAGAGAATCACAACTAAA+AGG - chr4.3:38932183-38932202 MS.gene055604:CDS 35.0%
TTCATCTTCTTGGGATTTAG+AGG - chr4.3:38935650-38935669 MS.gene055604:intron 35.0%
TTTCCCTAAATCTTGCATGA+GGG + chr4.3:38932253-38932272 None:intergenic 35.0%
TTTGGTATAGATATCCACCA+TGG - chr4.3:38937106-38937125 MS.gene055604:CDS 35.0%
TTTGTCAAGCAAAGTTATGC+GGG + chr4.3:38932914-38932933 None:intergenic 35.0%
! AACTATCCTTGCTATACTGT+TGG + chr4.3:38936233-38936252 None:intergenic 35.0%
! AATGAGCTTTTACTTGAACG+TGG + chr4.3:38932646-38932665 None:intergenic 35.0%
! ACTTTCTGGTGATTATAAGG+TGG - chr4.3:38935965-38935984 MS.gene055604:intron 35.0%
! CAAGAATCTGTTGTTTATGG+TGG - chr4.3:38936304-38936323 MS.gene055604:intron 35.0%
! GGTGCGCAACTTTTTATTAA+TGG + chr4.3:38932522-38932541 None:intergenic 35.0%
! TCGGACCTTTATTTAAAACC+TGG - chr4.3:38935463-38935482 MS.gene055604:intron 35.0%
! TTTTTGTAGGATCGCTTCAA+TGG + chr4.3:38934109-38934128 None:intergenic 35.0%
!! AAATTTTATTTGGGGAGACG+AGG + chr4.3:38933486-38933505 None:intergenic 35.0%
!! TTTGCTTTTCCGCCTTATAA+CGG + chr4.3:38934525-38934544 None:intergenic 35.0%
!!! AGGTTTTAAATAAAGGTCCG+AGG + chr4.3:38935464-38935483 None:intergenic 35.0%
!!! GTTCTGCAATGTTTGGTTTT+TGG + chr4.3:38936810-38936829 None:intergenic 35.0%
AACTTATTTGCAGTCCATGG+TGG + chr4.3:38937123-38937142 None:intergenic 40.0%
AACTTTGCTTGACAAACCCT+TGG - chr4.3:38932918-38932937 MS.gene055604:intron 40.0%
AATAATTGGTCGGATTCCTG+TGG + chr4.3:38935245-38935264 None:intergenic 40.0%
ACTTCGATCTAGTGCAGATT+CGG + chr4.3:38934443-38934462 None:intergenic 40.0%
AGAAATTGTTCATGAGCCTC+TGG - chr4.3:38934813-38934832 MS.gene055604:intron 40.0%
AGAGTATATCGGTAGGAGTT+GGG - chr4.3:38934182-38934201 MS.gene055604:CDS 40.0%
AGATTGGATGTCAAGCAAGA+AGG - chr4.3:38934676-38934695 MS.gene055604:CDS 40.0%
AGTTAGTAGTCTAGTCCATC+GGG - chr4.3:38935834-38935853 MS.gene055604:intron 40.0%
ATAATTGCTGCATCAAGTGG+GGG + chr4.3:38936461-38936480 None:intergenic 40.0%
ATATTGCCAAAACTACAGCG+CGG + chr4.3:38935409-38935428 None:intergenic 40.0%
ATTATAAGGTGGCTGTGAAG+CGG - chr4.3:38935976-38935995 MS.gene055604:intron 40.0%
CACTAAATGACTCAGAAGTG+TGG - chr4.3:38933257-38933276 MS.gene055604:intron 40.0%
CATAATTGCTGCATCAAGTG+GGG + chr4.3:38936462-38936481 None:intergenic 40.0%
CGAGGTGGATAGTATGATAT+TGG + chr4.3:38933468-38933487 None:intergenic 40.0%
CGGATTCTTGTGGGAAAATA+TGG - chr4.3:38935996-38936015 MS.gene055604:intron 40.0%
CTAACGTTCCTATCTGTGAA+TGG + chr4.3:38934622-38934641 None:intergenic 40.0%
CTCCACTTATTCACGTTTAG+AGG - chr4.3:38934221-38934240 MS.gene055604:CDS 40.0%
CTTGAAAGCAATGCTATTGC+AGG + chr4.3:38934790-38934809 None:intergenic 40.0%
GAAATTGTTCATGAGCCTCT+GGG - chr4.3:38934814-38934833 MS.gene055604:intron 40.0%
GAACAAACACCGTTATAAGG+CGG - chr4.3:38934513-38934532 MS.gene055604:CDS 40.0%
GACCGACAAGTTCAATTCAT+AGG + chr4.3:38932800-38932819 None:intergenic 40.0%
GCATTTACACGAGAGTAGTT+AGG - chr4.3:38932887-38932906 MS.gene055604:CDS 40.0%
GCCATTAAAGTTATCCAAGG+GGG - chr4.3:38935218-38935237 MS.gene055604:intron 40.0%
GCTATACTGTTGGAATGTTG+TGG + chr4.3:38936223-38936242 None:intergenic 40.0%
GGAAAATATGGAACTTGTGC+TGG - chr4.3:38936008-38936027 MS.gene055604:intron 40.0%
GGACTCACTTTCATCTTCTT+GGG - chr4.3:38935641-38935660 MS.gene055604:intron 40.0%
GGTGGATAGTATGATATTGG+TGG + chr4.3:38933465-38933484 None:intergenic 40.0%
GTGAATACATAAAGGGCAAG+AGG + chr4.3:38936788-38936807 None:intergenic 40.0%
GTTTCCCTAAATCTTGCATG+AGG + chr4.3:38932254-38932273 None:intergenic 40.0%
TAGAGTATATCGGTAGGAGT+TGG - chr4.3:38934181-38934200 MS.gene055604:CDS 40.0%
TATTGAGCCAACAATCTTGG+TGG - chr4.3:38936433-38936452 MS.gene055604:intron 40.0%
TCATCTTGGAATTTGCCCTT+TGG - chr4.3:38934853-38934872 MS.gene055604:intron 40.0%
TCCCCCTTGGATAACTTTAA+TGG + chr4.3:38935222-38935241 None:intergenic 40.0%
TCGAGCGTGTTATCAAGAAT+CGG + chr4.3:38935714-38935733 None:intergenic 40.0%
TGGACTCACTTTCATCTTCT+TGG - chr4.3:38935640-38935659 MS.gene055604:intron 40.0%
TGTCAAAGGAGAATTTCCCA+TGG + chr4.3:38937038-38937057 None:intergenic 40.0%
TTAAATTGCAGTCACGGCAA+CGG - chr4.3:38935349-38935368 MS.gene055604:intron 40.0%
TTTGCAGGTGGAAAAGATTG+AGG - chr4.3:38936730-38936749 MS.gene055604:intron 40.0%
! CAGAAGTGTGGTGCTTAAAT+CGG - chr4.3:38933269-38933288 MS.gene055604:CDS 40.0%
! GCTCTATTGTTGTGCCTTTT+AGG - chr4.3:38935805-38935824 MS.gene055604:intron 40.0%
! TTGGTGACTGAATGTGTCAA+AGG + chr4.3:38937052-38937071 None:intergenic 40.0%
!! GGATTGGTCCTTGTTATTCT+TGG - chr4.3:38937180-38937199 MS.gene055604:CDS 40.0%
!! GGCTTTATTGTCCAAGTAAG+TGG + chr4.3:38935201-38935220 None:intergenic 40.0%
!! TCTTGAAGCTTTTAGAGACG+AGG - chr4.3:38932278-38932297 MS.gene055604:CDS 40.0%
AATATCAGGTAGTGCACGAG+TGG - chr4.3:38935539-38935558 MS.gene055604:intron 45.0%
ACATAAAGGGCAAGAGGCTT+AGG + chr4.3:38936782-38936801 None:intergenic 45.0%
AGCAATGCTATTGCAGGTAG+TGG + chr4.3:38934784-38934803 None:intergenic 45.0%
AGCAGTGCAAATTATGGCCT+CGG - chr4.3:38935444-38935463 MS.gene055604:intron 45.0%
AGGTGGAATTGATGAAGGTG+TGG - chr4.3:38936173-38936192 MS.gene055604:intron 45.0%
AGTCTACCATTTGGAGGAGT+AGG - chr4.3:38936991-38937010 MS.gene055604:intron 45.0%
ATAATGAGAACGACACCCAG+AGG + chr4.3:38934832-38934851 None:intergenic 45.0%
ATATCAGGTAGTGCACGAGT+GGG - chr4.3:38935540-38935559 MS.gene055604:intron 45.0%
ATGGCCCTCATGCAAGATTT+AGG - chr4.3:38932246-38932265 MS.gene055604:CDS 45.0%
CGAGCGTGTTATCAAGAATC+GGG + chr4.3:38935713-38935732 None:intergenic 45.0%
GAGTATATCGGTAGGAGTTG+GGG - chr4.3:38934183-38934202 MS.gene055604:CDS 45.0%
GCAGATAGTCTACCATTTGG+AGG - chr4.3:38936985-38937004 MS.gene055604:intron 45.0%
GCAGCAGATAGTCTACCATT+TGG - chr4.3:38936982-38937001 MS.gene055604:intron 45.0%
GTGACAAGAGACTCATAACC+AGG + chr4.3:38935484-38935503 None:intergenic 45.0%
GTGGATTTGGCATGTACCAT+GGG - chr4.3:38937019-38937038 MS.gene055604:intron 45.0%
TGGCCCTCATGCAAGATTTA+GGG - chr4.3:38932247-38932266 MS.gene055604:CDS 45.0%
! AGTGGATTTGGCATGTACCA+TGG - chr4.3:38937018-38937037 MS.gene055604:intron 45.0%
! TCGGCGCTTCAAGATTTGTT+AGG - chr4.3:38933288-38933307 MS.gene055604:CDS 45.0%
! TGTGCAAGAGCATACACTTC+AGG - chr4.3:38935745-38935764 MS.gene055604:intron 45.0%
! TTTTGTTCGTCGTTGTGCAG+TGG + chr4.3:38934554-38934573 None:intergenic 45.0%
!! TTGTCTTTGGAGCCACTGAT+AGG - chr4.3:38935092-38935111 MS.gene055604:intron 45.0%
!! TTTTATTTGGGGAGACGAGG+TGG + chr4.3:38933483-38933502 None:intergenic 45.0%
!! ATAAATAAATAAATAAACTA+AGG + chr4.3:38936697-38936716 None:intergenic 5.0%
!!! AAAGTTAAATAATTTTTTTA+AGG - chr4.3:38933775-38933794 MS.gene055604:CDS 5.0%
!!! TGTTTTATTTTATTTTTATA+AGG - chr4.3:38936153-38936172 MS.gene055604:intron 5.0%
AAAGTGAGTCCACTACTGCC+GGG + chr4.3:38935632-38935651 None:intergenic 50.0%
AATGCCAGCAGCAAGTAGAG+AGG + chr4.3:38935177-38935196 None:intergenic 50.0%
ACCCAACTCCAGTGTTACAG+GGG + chr4.3:38935601-38935620 None:intergenic 50.0%
ACCCCTGTAACACTGGAGTT+GGG - chr4.3:38935597-38935616 MS.gene055604:intron 50.0%
CACCCAACTCCAGTGTTACA+GGG + chr4.3:38935602-38935621 None:intergenic 50.0%
CATGCAGGAGACAACTCTGA+AGG + chr4.3:38935152-38935171 None:intergenic 50.0%
CTACCATTTGGAGGAGTAGG+TGG - chr4.3:38936994-38937013 MS.gene055604:intron 50.0%
CTGATAGGAGCTATAGCTGC+TGG - chr4.3:38935107-38935126 MS.gene055604:intron 50.0%
CTTCCACCTACTCCTCCAAA+TGG + chr4.3:38937000-38937019 None:intergenic 50.0%
GAAAGTGAGTCCACTACTGC+CGG + chr4.3:38935633-38935652 None:intergenic 50.0%
GCAAGTAGAGAGGAACATGC+AGG + chr4.3:38935167-38935186 None:intergenic 50.0%
GCAGCTATAGCTCCTATCAG+TGG + chr4.3:38935107-38935126 None:intergenic 50.0%
TATCAGGTAGTGCACGAGTG+GGG - chr4.3:38935541-38935560 MS.gene055604:intron 50.0%
TTTGGAGGAGTAGGTGGAAG+TGG - chr4.3:38937000-38937019 MS.gene055604:intron 50.0%
! GCTGTGAAGCGGATTCTTGT+GGG - chr4.3:38935987-38936006 MS.gene055604:intron 50.0%
! GGAGTAGGTGGAAGTGGATT+TGG - chr4.3:38937006-38937025 MS.gene055604:intron 50.0%
! GGCAAGATCTGGCGTTTTGA+TGG + chr4.3:38937216-38937235 None:intergenic 50.0%
! TGCTGGCATTGCCACTTACT+TGG - chr4.3:38935187-38935206 MS.gene055604:intron 50.0%
! TGTTCCTCTCTACTTGCTGC+TGG - chr4.3:38935170-38935189 MS.gene055604:intron 50.0%
! TTGCAACCGCGCTGTAGTTT+TGG - chr4.3:38935400-38935419 MS.gene055604:intron 50.0%
ACTCCAGTGTTACAGGGGTC+AGG + chr4.3:38935596-38935615 None:intergenic 55.0%
AGGGTTGCGTCGTTTCCTAG+TGG - chr4.3:38932203-38932222 MS.gene055604:CDS 55.0%
AGTTATCCAAGGGGGACCAC+AGG - chr4.3:38935226-38935245 MS.gene055604:intron 55.0%
CCACCCAACTCCAGTGTTAC+AGG + chr4.3:38935603-38935622 None:intergenic 55.0%
CCTGTAACACTGGAGTTGGG+TGG - chr4.3:38935600-38935619 MS.gene055604:intron 55.0%
CTACAGCGCGGTTGCAATTG+AGG + chr4.3:38935397-38935416 None:intergenic 55.0%
GACCCCTGTAACACTGGAGT+TGG - chr4.3:38935596-38935615 MS.gene055604:intron 55.0%
GGAGTTGGGTGGAAAATGCC+CGG - chr4.3:38935611-38935630 MS.gene055604:intron 55.0%
GGGGGATCCACCAAGATTGT+TGG + chr4.3:38936443-38936462 None:intergenic 55.0%
TGGAAAATGCCCGGCAGTAG+TGG - chr4.3:38935620-38935639 MS.gene055604:intron 55.0%
! GGCTGTGAAGCGGATTCTTG+TGG - chr4.3:38935986-38936005 MS.gene055604:intron 55.0%
GCACCTGACCCCTGTAACAC+TGG - chr4.3:38935590-38935609 MS.gene055604:intron 60.0%
CGGATTCCTGTGGTCCCCCT+TGG + chr4.3:38935235-38935254 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 38932108 38937242 38932108 ID=MS.gene055604
chr4.3 mRNA 38932108 38937242 38932108 ID=MS.gene055604.t1;Parent=MS.gene055604
chr4.3 exon 38937051 38937242 38937051 ID=MS.gene055604.t1.exon1;Parent=MS.gene055604.t1
chr4.3 CDS 38937051 38937242 38937051 ID=cds.MS.gene055604.t1;Parent=MS.gene055604.t1
chr4.3 exon 38934653 38934721 38934653 ID=MS.gene055604.t1.exon2;Parent=MS.gene055604.t1
chr4.3 CDS 38934653 38934721 38934653 ID=cds.MS.gene055604.t1;Parent=MS.gene055604.t1
chr4.3 exon 38934476 38934572 38934476 ID=MS.gene055604.t1.exon3;Parent=MS.gene055604.t1
chr4.3 CDS 38934476 38934572 38934476 ID=cds.MS.gene055604.t1;Parent=MS.gene055604.t1
chr4.3 exon 38934054 38934260 38934054 ID=MS.gene055604.t1.exon4;Parent=MS.gene055604.t1
chr4.3 CDS 38934054 38934260 38934054 ID=cds.MS.gene055604.t1;Parent=MS.gene055604.t1
chr4.3 exon 38933679 38933803 38933679 ID=MS.gene055604.t1.exon5;Parent=MS.gene055604.t1
chr4.3 CDS 38933679 38933803 38933679 ID=cds.MS.gene055604.t1;Parent=MS.gene055604.t1
chr4.3 exon 38933262 38933366 38933262 ID=MS.gene055604.t1.exon6;Parent=MS.gene055604.t1
chr4.3 CDS 38933262 38933366 38933262 ID=cds.MS.gene055604.t1;Parent=MS.gene055604.t1
chr4.3 exon 38933003 38933175 38933003 ID=MS.gene055604.t1.exon7;Parent=MS.gene055604.t1
chr4.3 CDS 38933003 38933175 38933003 ID=cds.MS.gene055604.t1;Parent=MS.gene055604.t1
chr4.3 exon 38932830 38932920 38932830 ID=MS.gene055604.t1.exon8;Parent=MS.gene055604.t1
chr4.3 CDS 38932830 38932920 38932830 ID=cds.MS.gene055604.t1;Parent=MS.gene055604.t1
chr4.3 exon 38932464 38932613 38932464 ID=MS.gene055604.t1.exon9;Parent=MS.gene055604.t1
chr4.3 CDS 38932464 38932613 38932464 ID=cds.MS.gene055604.t1;Parent=MS.gene055604.t1
chr4.3 exon 38932108 38932371 38932108 ID=MS.gene055604.t1.exon10;Parent=MS.gene055604.t1
chr4.3 CDS 38932108 38932371 38932108 ID=cds.MS.gene055604.t1;Parent=MS.gene055604.t1
Gene Sequence

>MS.gene055604

ATGGGAACTTTGGAGATGGATCATCTAAAGAATATGAGAGAATATTTTAGGAGTGGAAAAACAAAAGAAGCATCTTGGAGAGAATCACAACTAAAAGGGTTGCGTCGTTTCCTAGTGGAAAAAGAGAATGATATCTTCATGGCCCTCATGCAAGATTTAGGGAAACATCGTCTTGAAGCTTTTAGAGACGAGGTATTTATTTCTAAACTCTCTACATATATATAATTTCTTCAAGATATGTAGACATATTTTCCAATCCAAGGAATTTATTTATTTTTTGGTAAGGTTTTCAACCAAATGATCCGTACACACATATATATGGTTCATGAGGACAAAACTATCTAGTTAGTTAGGAAATAAGATATATAACAACATGGATATCCTATATAAAAAAAGATATCCATAAAGTAACCATTAATAAAAAGTTGCGCACCTTCATCTATAGAGAATAAAACACTATTTAAAGTGAGATTAGTGTTCCATATAATCTATATGGATCAATGCTTGAAAATGGTTTAAAACTCAAACAATATAACCACGTTCAAGTAAAAGCTCATTTATCTGTCCATGAAAAAGTTAAGAAAAATAAATATTAGAGATTCAAATTTCAACTTACATCTGTTTTCCATTATTTTTGTTAAAGCGACACCAATCAAGTCTGTGTCTTAATTTAAGGACATAGCAAATGACCTATGAATTGAACTTGTCGGTCTTCATTAAAGTTTTGAACGATTTTGAAGCATTGAAATAACATAGATCACATGAGACTTTCTCATCTAGCATTTACACGAGAGTAGTTAGGGCCCGCATAACTTTGCTTGACAAACCCTTGGTCTTTGTTTATCTCTAATTTATTACTTTTTTCTTTTCAAAATGCATGTCATAATCAACCATTTCACACATGTTAATGCACAACTTTGACTGTTAATATATTTAATTATCTAAAGTAAAAAATTATAAAAATTTAATATTTTGAATATATTTATCGAGACAAATTCAAACAACATCTTACATGCTAATATTTGTATTAAAGTTTTTTTTTGGTATTAAAGTTTAATATATGATCTATTAGTCTATTTAAATAAGTACTTTAAAATAAGTTTGTTTTTTCATTTATTTTGTAAAGAGTCTAACGACAAAACTCACACACACTAAATGACTCAGAAGTGTGGTGCTTAAATCGGCGCTTCAAGATTTGTTAGGTATATTTGCACTTAAAGATTTGTCAAGTATATCTGCAGTCTTTTACCATTTGTGATGTTTAAATTTTATCTAGGAAACACTAATTTTTCTATTGTTTTTATATGAACTAAGTAATATTAAATAAAAATTTACGAAATAAAATTTATGTGATCCACCAATATCATACTATCCACCTCGTCTCCCCAAATAAAATTTGAGAAATGATATTTGTATCACCATTTTTTTTTACAATCTCTCTCTCTCTCTCTCCCCCCCGTTAATCTCTATTTTTTTGTCCAATTAGAAGAGTGAAAAAAATTGTTACGAAAGTTGTTGAGAAATAGCTGTACAAATATTATTCCTCATGCTATAAACCATATATACAACCAAACAAAACGATTTTAGGAGAAAAAAGATATAGTTTATTAGTGACATCATTTTACAAAAAAGAGTATATCTCCTAAAAATAAACGGTATTTAGTGGAAAAGTTAAATAATTTTTTTAAGGAAAGTTAAACAATTCATAGTGTATTAAGATATATGCTAAAAACCATACAACCAAACAAAACGATTTTAGTAGAAAAAAGATATAGTTTTTTTTTTTTTGACAAAAGAAAAAAGATATAGTTTATTAGTGACATCTTTTTACAAAAAAGAGTATATCTCCTAAAAATAAACGGAATTTAGAGGAAAAGTTAAATCATTTTTAAGGAAAGTTAAAAAATTCATAGTTTATTAAGATAAAAAAAATATATTTTATTTATTTGAAGAAGTAAAATTTAGTAATAAATGTTGGCTAGTTGAATAAGATTAACTCCATTGAAGCGATCCTACAAAAAATGTAAAAGCATAATAGATATTTTTCACAAAAAATAAACAATATTCATTTGATAGAGTATATCGGTAGGAGTTGGGGTTCAAACCTAAGATTCTCCACTTATTCACGTTTAGAGGTAAATTTATAGTCAATATACTACTTGACCAAAAAAGATAGAATATATCAATATAAAAACAAATTTGCTAAAAGCAATAACGATAAATCTGCGAACAAACTCACAATATTCATGTTATTACATAAAACGACAAAATACATATATCCGGAATAATCATTGCTTTAGACTTGTAACGTTGATGACATCAAAATCATTATCCGAATCTGCACTAGATCGAAGTGATCTAACGGTCTAAATCGAACAAATCGAAGTGATCTAACAGTCTGAATCGAACAAACACCGTTATAAGGCGGAAAAGCAAAACAACGCCACTGCACAACGACGAACAAAAGTTACAAATGTATTGTTCTCATTATATACTTTCTAATTACTAAATCCATTCACAGATAGGAACGTTAGTGAAGACCTTAAATCTCGCATTAAAGTGTCTGAAAGATTGGATGTCAAGCAAGAAGGTATGATCTATGTAAAACTAACGTGAAGAAAATATGTATATGTGAAGCCACTAATAACGAAATAATTTACTTTGATATAGGCTCCACTACCTGCAATAGCATTGCTTTCAAGTGCAGAAATTGTTCATGAGCCTCTGGGTGTCGTTCTCATTATTTCATCTTGGAATTTGCCCTTTGGTGAGTTAATTATATACTAAGATACTTGTTGCTTTGAACTAAAATCACATTCATTCAATTACTAGAAAAAGTTGGAATAACGGCAAAAATTTAGAGACGGAAAATTTACTGACCAAATTTATTTTTTCCGCCTCTAATTTTTTTCGTTATTCTGTTAGAGTCTTCATAAATTTGGGCTAGTAACATAATATTATGTAACCAATAAAAAAACACAGGATTGTCTTTGGAGCCACTGATAGGAGCTATAGCTGCTGGAAACGCAGCAGTGTTAAAACCTTCAGAGTTGTCTCCTGCATGTTCCTCTCTACTTGCTGCTGGCATTGCCACTTACTTGGACAATAAAGCCATTAAAGTTATCCAAGGGGGACCACAGGAATCCGACCAATTATTACAGCAAAAATGGGACAAAATCTTTTTTACAGGTCAACATTATCCAAATATTTTTCATCGCGACTTTTAGGTTTTGAGCAGATTTTAAATTGCAGTCACGGCAACGGTGACATTCATGTTTTAATGTGGCCTCAATTGCAACCGCGCTGTAGTTTTGGCAATATCAAAAACTATTATGAAGCAGTGCAAATTATGGCCTCGGACCTTTATTTAAAACCTGGTTATGAGTCTCTTGTCACAATTTTTGATGAGTTTTTTTCTTATTGTAAAAACTAATATCAGGTAGTGCACGAGTGGGGAGCATTGTGATGTCAGCAGCTGCGAAGCACCTGACCCCTGTAACACTGGAGTTGGGTGGAAAATGCCCGGCAGTAGTGGACTCACTTTCATCTTCTTGGGATTTAGAGGTGAGTTAATTCATTTTCATTTTTCACTATAGTAGCGTCCCGATTCTTGATAACACGCTCGAGCGTAGCAGAATGTGCAAGAGCATACACTTCAGGAGTAAACTTGTAAACTAAATCGTAATATTTAAATAAAGCTCTATTGTTGTGCCTTTTAGGTTTCTAAGTTAGTAGTCTAGTCCATCGGGTTTTACTATATATTTGTTTGTAACCTTTATTATGTCATGCCGTTGTAATCTTATGAAACCCTAACCGTCACTTTTATTGTTATGGTTGATTCTAATTAGCAATGTAACACTTTCTGGTGATTATAAGGTGGCTGTGAAGCGGATTCTTGTGGGAAAATATGGAACTTGTGCTGGTCAAGCATGCATAGCAATTGACTATGTCATCGTTGAAAAGAGTTGCTGTTCAAAATTGGTAGATCTCTTAAATTCAAGTTTTCAGGTTCACTGTTATGTAAGTTTTTGATTATACTTACTCTTGTTTTATTTTATTTTTATAAGGTGGAATTGATGAAGGTGTGGATCAAGAAAATGTTTGGAGACAACCCACAACATTCCAACAGTATAGCAAGGATAGTTAATAAACAACACTTAACTAGATTAAAGAAACTTCTTGATGATCAAAATGTTCAAGAATCTGTTGTTTATGGTGGCTCAATTGACGAAGAAAACTTGTAAATAACACCCTGCCTTTCACATACTAATGTTCCTAAATTCCAATCACCAAAAAAACAACATGTGCTCAAATATGTGCAGATTTATTGAGCCAACAATCTTGGTGGATCCCCCACTTGATGCAGCAATTATGTTAGATGAAGTTTTTGGCCCATTACTTCCAATTATTACTGTAAGTTTCATTGCATAAAATAGCTTCTAGACTTACGACATGATTTTTAAATGACGACACTAGTGACTATTTTACAAATGTCTGCTATGAATCTTGACGTTACAAAATCAAACTCTTACGACTTAGTTATATCACATGCTTATATCTATCTTTTCTCAAACTTAAGTTCCCTTCCTTAGTTTATTTATTTATTTATATTTGCATAATATTTTGCAGGTGGAAAAGATTGAGGACAGTATTGAATTCATAAGCTCTAGGCCTAAGCCTCTTGCCCTTTATGTATTCACCAAAAACCAAACATTGCAGAACAGAATGATATCTGAAACATCATCTGGCAGTGTTACTTTCAATGATGCAATTCTACAAGTAGTACTCTAATCAGTTCAATTTTTCACATACCAATTTATATTATTAATGTTCAAATACATAACTTAATGTGCATAATTTGTTGTTTACAGTATGCAGCAGATAGTCTACCATTTGGAGGAGTAGGTGGAAGTGGATTTGGCATGTACCATGGGAAATTCTCCTTTGACACATTCAGTCACCAAAAAGCAATTGTTAGAAGAAGTTTCTTAACTGATTTTTGGTATAGATATCCACCATGGACTGCAAATAAGTTTCAACTACTTGAGGTCTCTTATAATTATGATTATTTGGGATTGGTCCTTGTTATTCTTGGATTAAAGAGACCATCAAAACGCCAGATCTTGCCTTGTTAG

Protein sequence

>MS.gene055604.t1

MGTLEMDHLKNMREYFRSGKTKEASWRESQLKGLRRFLVEKENDIFMALMQDLGKHRLEAFRDEIGTLVKTLNLALKCLKDWMSSKKAPLPAIALLSSAEIVHEPLGVVLIISSWNLPFGLSLEPLIGAIAAGNAAVLKPSELSPACSSLLAAGIATYLDNKAIKVIQGGPQESDQLLQQKWDKIFFTGSARVGSIVMSAAAKHLTPVTLELGGKCPAVVDSLSSSWDLEVAVKRILVGKYGTCAGQACIAIDYVIVEKSCCSKLVELMKVWIKKMFGDNPQHSNSIARIVNKQHLTRLKKLLDDQNVQESVVYGGSIDEENLFIEPTILVDPPLDAAIMLDEVFGPLLPIITVEKIEDSIEFISSRPKPLALYVFTKNQTLQNRMISETSSGSVTFNDAILQYAADSLPFGGVGGSGFGMYHGKFSFDTFSHQKAIVRRSFLTDFWYRYPPWTANKFQLLEVSYNYDYLGLVLVILGLKRPSKRQILPC