Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89289.t1 | XP_024634947.1 | 93.4 | 396 | 25 | 1 | 1 | 395 | 1 | 396 | 1.20E-205 | 725.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89289.t1 | A0A1S2Z1G2 | 70.0 | 397 | 115 | 3 | 1 | 395 | 1 | 395 | 3.7e-151 | 544.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051613 | MS.gene89289 | 0.810556 | 1.09E-50 | -1.69E-46 |
| MS.gene052447 | MS.gene89289 | 0.827038 | 1.95E-54 | -1.69E-46 |
| MS.gene060134 | MS.gene89289 | 0.828778 | 7.44E-55 | -1.69E-46 |
| MS.gene060135 | MS.gene89289 | 0.815068 | 1.12E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89289.t1 | MTR_2g021870 | 92.208 | 77 | 6 | 0 | 336 | 412 | 1 | 77 | 4.45e-42 | 143 |
| MS.gene89289.t1 | MTR_4g035745 | 86.538 | 52 | 7 | 0 | 84 | 135 | 1 | 52 | 7.22e-27 | 102 |
| MS.gene89289.t1 | MTR_4g125750 | 48.810 | 84 | 43 | 0 | 283 | 366 | 114 | 197 | 5.56e-17 | 79.3 |
| MS.gene89289.t1 | MTR_5g061300 | 25.806 | 217 | 129 | 8 | 97 | 289 | 73 | 281 | 8.99e-13 | 69.3 |
| MS.gene89289.t1 | MTR_6g012560 | 53.125 | 64 | 23 | 1 | 337 | 393 | 109 | 172 | 1.83e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89289.t1 | AT1G40087 | 27.666 | 347 | 221 | 12 | 86 | 416 | 56 | 388 | 1.45e-23 | 102 |
| MS.gene89289.t1 | AT3G30200 | 25.589 | 297 | 198 | 11 | 105 | 397 | 193 | 470 | 3.68e-13 | 71.6 |
Find 79 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGATGAGGAGGCTAATA+TGG | 0.216857 | 7.1:-37639461 | MS.gene89289:CDS |
| CAACAAGAATGTTAGATATA+TGG | 0.241965 | 7.1:-37641401 | MS.gene89289:CDS |
| AATAATGAAGATAATGAAAA+TGG | 0.293353 | 7.1:-37639594 | MS.gene89289:intron |
| CATATATCTAACATTCTTGT+TGG | 0.301930 | 7.1:+37641402 | None:intergenic |
| TCTCGCAATTCATCAGTTAT+TGG | 0.316205 | 7.1:+37641083 | None:intergenic |
| CCCAAAATTTATTGATGAAA+AGG | 0.332658 | 7.1:-37640730 | MS.gene89289:intron |
| ACAATGGAAGGGTGATTTAA+AGG | 0.335770 | 7.1:-37641027 | MS.gene89289:CDS |
| ACAGTAGATGAAATTGTATC+TGG | 0.337066 | 7.1:-37640981 | MS.gene89289:CDS |
| ACGAAATCGTGCCAAGTATC+AGG | 0.338596 | 7.1:-37640781 | MS.gene89289:CDS |
| GTTGGACCTCTACGTCGTTT+AGG | 0.354697 | 7.1:+37641420 | None:intergenic |
| AATGTTAGATATATGGGAAT+TGG | 0.359232 | 7.1:-37641394 | MS.gene89289:CDS |
| AACAAGAATGTTAGATATAT+GGG | 0.370254 | 7.1:-37641400 | MS.gene89289:CDS |
| ATGACACTTTCTGTATGATT+AGG | 0.370466 | 7.1:+37641612 | None:intergenic |
| ATTGTTAAGTTGGATAACTA+TGG | 0.378651 | 7.1:-37641357 | MS.gene89289:CDS |
| GGACTCAATGGTGCAGAAAC+TGG | 0.382474 | 7.1:-37641642 | MS.gene89289:CDS |
| ATCGTGGGTTGGTTGAATAT+TGG | 0.383055 | 7.1:-37640920 | MS.gene89289:CDS |
| TCATTATCTTCATTATTGAT+TGG | 0.384406 | 7.1:+37639600 | None:intergenic |
| TCTTAGGTAGTATTGTTAGA+AGG | 0.387853 | 7.1:-37641296 | MS.gene89289:CDS |
| TGATTTCATCATTGTTAAGT+TGG | 0.388733 | 7.1:-37641367 | MS.gene89289:CDS |
| GAAGAAGGAAATTGAGTATT+GGG | 0.388826 | 7.1:-37641731 | MS.gene89289:CDS |
| AAGGGGCGTGTGCGATGTAT+AGG | 0.410197 | 7.1:-37640051 | MS.gene89289:CDS |
| GATAACTATGGACGACCAAT+TGG | 0.442054 | 7.1:-37641345 | MS.gene89289:CDS |
| TAACAATACTACCTAAGAAA+CGG | 0.448034 | 7.1:+37641301 | None:intergenic |
| CTTCATTATTGATTGGACTA+GGG | 0.456427 | 7.1:+37639607 | None:intergenic |
| GTATCAGGATGTCCATTGTA+TGG | 0.456827 | 7.1:-37640766 | MS.gene89289:CDS |
| AACAATACTACCTAAGAAAC+GGG | 0.459809 | 7.1:+37641302 | None:intergenic |
| TCTTCATTATTGATTGGACT+AGG | 0.459814 | 7.1:+37639606 | None:intergenic |
| CGAAGAAGGAAATTGAGTAT+TGG | 0.459979 | 7.1:-37641732 | MS.gene89289:CDS |
| CACCCATCAACATCAAAACT+TGG | 0.461904 | 7.1:-37641263 | MS.gene89289:CDS |
| AGCTTCTATGTCGGAAGGAA+TGG | 0.463619 | 7.1:+37641566 | None:intergenic |
| GCGTGATAGAGTTAAGACTA+TGG | 0.466626 | 7.1:-37639974 | MS.gene89289:CDS |
| AGTACAAGGAGCTGCAAAGA+AGG | 0.477092 | 7.1:-37640070 | MS.gene89289:CDS |
| ACAAGCAGGGTCCTATGTCT+TGG | 0.485224 | 7.1:-37640113 | MS.gene89289:CDS |
| GCCGTCCCTTCGTCACCAAT+TGG | 0.487817 | 7.1:+37641330 | None:intergenic |
| AAGGGTGATTTAAAGGCAGC+TGG | 0.488397 | 7.1:-37641020 | MS.gene89289:CDS |
| ACAATGGACATCCTGATACT+TGG | 0.493353 | 7.1:+37640770 | None:intergenic |
| GATAATACAAGCTGCTAGAC+AGG | 0.497499 | 7.1:-37639887 | MS.gene89289:intron |
| AATGGTGCAGAAACTGGTTC+TGG | 0.500925 | 7.1:-37641636 | MS.gene89289:CDS |
| ATTTGTTGAATCTGAATTTG+TGG | 0.503119 | 7.1:+37641671 | None:intergenic |
| ACAAATGTGCAAGGACTCAA+TGG | 0.507954 | 7.1:-37641654 | MS.gene89289:CDS |
| TTCATTATTGATTGGACTAG+GGG | 0.510352 | 7.1:+37639608 | None:intergenic |
| AGCGATGCTGGAACAAATAG+AGG | 0.510557 | 7.1:-37641214 | MS.gene89289:intron |
| CGCAATTCATCAGTTATTGG+AGG | 0.513443 | 7.1:+37641086 | None:intergenic |
| GAGCAGCAATGGCTCGAAGA+AGG | 0.515414 | 7.1:-37641746 | None:intergenic |
| GTACAAGGAGCTGCAAAGAA+GGG | 0.517138 | 7.1:-37640069 | MS.gene89289:CDS |
| TTGGACTAGGGGAATTCAAA+GGG | 0.520133 | 7.1:+37639619 | None:intergenic |
| ATTGGACTAGGGGAATTCAA+AGG | 0.524515 | 7.1:+37639618 | None:intergenic |
| CTAGGGGAATTCAAAGGGTT+AGG | 0.527124 | 7.1:+37639624 | None:intergenic |
| ATGTAAATATCTTGACGTCC+AGG | 0.530259 | 7.1:+37640607 | None:intergenic |
| TCAATCAACTCAAAACAAGC+AGG | 0.532194 | 7.1:-37640127 | MS.gene89289:CDS |
| TATCAGGATGTCCATTGTAT+GGG | 0.534129 | 7.1:-37640765 | MS.gene89289:CDS |
| GAATTGAGTTACGTGATGCT+AGG | 0.534756 | 7.1:-37640959 | MS.gene89289:CDS |
| AAGGGAAAAGGAGTGATGCC+TGG | 0.537898 | 7.1:-37640625 | MS.gene89289:CDS |
| CATCGAGAAAATAACAATGA+AGG | 0.539941 | 7.1:-37641708 | MS.gene89289:CDS |
| TCTTCAGCTTCTATGTCGGA+AGG | 0.543783 | 7.1:+37641561 | None:intergenic |
| GAAACTCGCACACGTAAAGA+TGG | 0.550872 | 7.1:-37640583 | MS.gene89289:CDS |
| AGTGAGATTCTACAGACTCA+TGG | 0.552321 | 7.1:+37641589 | None:intergenic |
| TTCTTCTTCAGCTTCTATGT+CGG | 0.560378 | 7.1:+37641557 | None:intergenic |
| ATTTCTTGTAGGTGAAGATG+AGG | 0.564889 | 7.1:-37639473 | MS.gene89289:intron |
| CGAAGCTCAATATCGTGGGT+TGG | 0.565385 | 7.1:-37640931 | MS.gene89289:CDS |
| TGAATCTGAATTTGTGGGAA+GGG | 0.575098 | 7.1:+37641677 | None:intergenic |
| GACGACCAATTGGTGACGAA+GGG | 0.579583 | 7.1:-37641335 | MS.gene89289:CDS |
| ACCAATTGGTGACGAAGGGA+CGG | 0.581959 | 7.1:-37641331 | MS.gene89289:CDS |
| GCAGGGTCCTATGTCTTGGA+AGG | 0.592209 | 7.1:-37640109 | MS.gene89289:CDS |
| TTTGTTGAATCTGAATTTGT+GGG | 0.594863 | 7.1:+37641672 | None:intergenic |
| ATGTCATCCTTCCAAGACAT+AGG | 0.596668 | 7.1:+37640102 | None:intergenic |
| GAAGAAGAACGTATTGTCGA+AGG | 0.600104 | 7.1:-37641540 | MS.gene89289:intron |
| GGACGACCAATTGGTGACGA+AGG | 0.609775 | 7.1:-37641336 | MS.gene89289:CDS |
| TCAGATTCAACAAATGTGCA+AGG | 0.614371 | 7.1:-37641663 | MS.gene89289:CDS |
| TCTTGTAGGTGAAGATGAGG+AGG | 0.617773 | 7.1:-37639470 | MS.gene89289:intron |
| TTGACGAAGCTCAATATCGT+GGG | 0.624589 | 7.1:-37640935 | MS.gene89289:CDS |
| TTGAATCTGAATTTGTGGGA+AGG | 0.627288 | 7.1:+37641676 | None:intergenic |
| TACAAGGAGCTGCAAAGAAG+GGG | 0.632795 | 7.1:-37640068 | MS.gene89289:CDS |
| GATAGAGTTAAGACTATGGA+GGG | 0.632932 | 7.1:-37639970 | MS.gene89289:CDS |
| ATTGACGAAGCTCAATATCG+TGG | 0.636862 | 7.1:-37640936 | MS.gene89289:CDS |
| TGATAGAGTTAAGACTATGG+AGG | 0.640558 | 7.1:-37639971 | MS.gene89289:CDS |
| ATCAGGATGTCCATTGTATG+GGG | 0.646013 | 7.1:-37640764 | MS.gene89289:CDS |
| CAATCAACTCAAAACAAGCA+GGG | 0.651054 | 7.1:-37640126 | MS.gene89289:CDS |
| GAAGAACCTAAACGACGTAG+AGG | 0.676471 | 7.1:-37641426 | MS.gene89289:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATATTTTCTTTGTTTTTT+AGG | - | chr7.1:37641647-37641666 | MS.gene89289:CDS | 10.0% |
| !! | AATAATGAAGATAATGAAAA+TGG | - | chr7.1:37641597-37641616 | MS.gene89289:CDS | 15.0% |
| !!! | TTGATTTTTGTATTTTTCAT+TGG | - | chr7.1:37640485-37640504 | MS.gene89289:intron | 15.0% |
| !! | AAAACAGAATTAAAAACAGT+TGG | + | chr7.1:37640997-37641016 | None:intergenic | 20.0% |
| !! | AACAAGAATGTTAGATATAT+GGG | - | chr7.1:37639791-37639810 | MS.gene89289:intron | 20.0% |
| !! | ACCTAAATCTAAAAAATCAA+AGG | - | chr7.1:37641169-37641188 | MS.gene89289:intron | 20.0% |
| !! | ACTAAAAAAACATAGTAATG+AGG | - | chr7.1:37641031-37641050 | MS.gene89289:CDS | 20.0% |
| !! | CAAATGAACAAAATAGAAAA+TGG | + | chr7.1:37639690-37639709 | None:intergenic | 20.0% |
| !! | TCATTATCTTCATTATTGAT+TGG | + | chr7.1:37641594-37641613 | None:intergenic | 20.0% |
| !!! | AACTGTTTTTAATTCTGTTT+TGG | - | chr7.1:37640996-37641015 | MS.gene89289:CDS | 20.0% |
| !!! | AATCTGATTTGAATGAAAAA+TGG | - | chr7.1:37640139-37640158 | MS.gene89289:CDS | 20.0% |
| !!! | ACCTTTGATTTTTTAGATTT+AGG | + | chr7.1:37641173-37641192 | None:intergenic | 20.0% |
| !!! | ACCTTTTCATCAATAAATTT+TGG | + | chr7.1:37640465-37640484 | None:intergenic | 20.0% |
| !!! | ACTGTTTTTAATTCTGTTTT+GGG | - | chr7.1:37640997-37641016 | MS.gene89289:CDS | 20.0% |
| !!! | CCTTTTCATCAATAAATTTT+GGG | + | chr7.1:37640464-37640483 | None:intergenic | 20.0% |
| !!! | CTTTTCTTTTTATTTCTTGT+AGG | - | chr7.1:37641707-37641726 | MS.gene89289:CDS | 20.0% |
| !!! | TTTGGTTTTTAGATGAAAAA+GGG | - | chr7.1:37640548-37640567 | MS.gene89289:intron | 20.0% |
| !!! | TTTTCGATTTTATGTGATAT+AGG | - | chr7.1:37641524-37641543 | MS.gene89289:intron | 20.0% |
| ! | AAACCAAACAAACATGTTAT+AGG | + | chr7.1:37640536-37640555 | None:intergenic | 25.0% |
| ! | AAACCTATAACATGTTTGTT+TGG | - | chr7.1:37640530-37640549 | MS.gene89289:intron | 25.0% |
| ! | AATGTTAGATATATGGGAAT+TGG | - | chr7.1:37639797-37639816 | MS.gene89289:intron | 25.0% |
| ! | ATACTTTCAAATGGTATAAC+AGG | + | chr7.1:37640732-37640751 | None:intergenic | 25.0% |
| ! | CAACAAGAATGTTAGATATA+TGG | - | chr7.1:37639790-37639809 | MS.gene89289:intron | 25.0% |
| ! | CAAGATATCATACTTTCAAA+TGG | + | chr7.1:37640741-37640760 | None:intergenic | 25.0% |
| ! | CATATATCTAACATTCTTGT+TGG | + | chr7.1:37639792-37639811 | None:intergenic | 25.0% |
| ! | CCCAAAATTTATTGATGAAA+AGG | - | chr7.1:37640461-37640480 | MS.gene89289:intron | 25.0% |
| ! | TAACAATACTACCTAAGAAA+CGG | + | chr7.1:37639893-37639912 | None:intergenic | 25.0% |
| ! | TACGTATAATATGTATGACT+TGG | + | chr7.1:37640321-37640340 | None:intergenic | 25.0% |
| ! | TGATTTCATCATTGTTAAGT+TGG | - | chr7.1:37639824-37639843 | MS.gene89289:intron | 25.0% |
| ! | TTCTTGTAGTAACTATGATT+TGG | - | chr7.1:37640773-37640792 | MS.gene89289:CDS | 25.0% |
| ! | TTTGTTGAATCTGAATTTGT+GGG | + | chr7.1:37639522-37639541 | None:intergenic | 25.0% |
| !! | ATTTGTTGAATCTGAATTTG+TGG | + | chr7.1:37639523-37639542 | None:intergenic | 25.0% |
| !! | TGGCTTGTAAAATATAGTTT+AGG | - | chr7.1:37640840-37640859 | MS.gene89289:intron | 25.0% |
| !! | TTGTAAGCATCTAACATTTT+TGG | - | chr7.1:37640663-37640682 | MS.gene89289:intron | 25.0% |
| !! | TTTTAGATGAAAAAGGGAAA+AGG | - | chr7.1:37640554-37640573 | MS.gene89289:CDS | 25.0% |
| !!! | AAATCAAGAGTATTGCTAAA+TGG | + | chr7.1:37641483-37641502 | None:intergenic | 25.0% |
| !!! | ATCGCTTTTTTATTATCTGA+GGG | + | chr7.1:37639963-37639982 | None:intergenic | 25.0% |
| !!! | ATTGTTAAGTTGGATAACTA+TGG | - | chr7.1:37639834-37639853 | MS.gene89289:intron | 25.0% |
| !!! | GACATATTTTCTAAAGTACA+AGG | - | chr7.1:37641107-37641126 | MS.gene89289:CDS | 25.0% |
| !!! | GTTTGGTTTTTAGATGAAAA+AGG | - | chr7.1:37640547-37640566 | MS.gene89289:intron | 25.0% |
| !!! | TTAATTCTGTTTTGGGTTTT+AGG | - | chr7.1:37641004-37641023 | MS.gene89289:CDS | 25.0% |
| !!! | TTCATTGATTTAAGAGAACA+TGG | - | chr7.1:37641369-37641388 | MS.gene89289:CDS | 25.0% |
| AAAAAACATAGTAATGAGGC+TGG | - | chr7.1:37641035-37641054 | MS.gene89289:CDS | 30.0% | |
| AACAATACTACCTAAGAAAC+GGG | + | chr7.1:37639892-37639911 | None:intergenic | 30.0% | |
| ACAGTAGATGAAATTGTATC+TGG | - | chr7.1:37640210-37640229 | MS.gene89289:intron | 30.0% | |
| AGATAATAAAAAAGCGATGC+TGG | - | chr7.1:37639965-37639984 | MS.gene89289:CDS | 30.0% | |
| ATGACACTTTCTGTATGATT+AGG | + | chr7.1:37639582-37639601 | None:intergenic | 30.0% | |
| ATTAAAAACAGTTGGCAATC+AGG | + | chr7.1:37640989-37641008 | None:intergenic | 30.0% | |
| CATCGAGAAAATAACAATGA+AGG | - | chr7.1:37639483-37639502 | MS.gene89289:intron | 30.0% | |
| GAAGAAGGAAATTGAGTATT+GGG | - | chr7.1:37639460-37639479 | MS.gene89289:CDS | 30.0% | |
| GTTCTTCATTCACAAGTAAA+AGG | + | chr7.1:37639752-37639771 | None:intergenic | 30.0% | |
| TCTTAGGTAGTATTGTTAGA+AGG | - | chr7.1:37639895-37639914 | MS.gene89289:CDS | 30.0% | |
| TGAATGAAAAATGGAGACAA+TGG | - | chr7.1:37640148-37640167 | MS.gene89289:CDS | 30.0% | |
| ! | AATTCGTTGAATTTTACTCG+TGG | - | chr7.1:37641448-37641467 | MS.gene89289:intron | 30.0% |
| ! | CTTCATTATTGATTGGACTA+GGG | + | chr7.1:37641587-37641606 | None:intergenic | 30.0% |
| ! | TCTTCATTATTGATTGGACT+AGG | + | chr7.1:37641588-37641607 | None:intergenic | 30.0% |
| ! | TTCATTATTGATTGGACTAG+GGG | + | chr7.1:37641586-37641605 | None:intergenic | 30.0% |
| !! | AACTATGATTTGGTGAGATA+TGG | - | chr7.1:37640783-37640802 | MS.gene89289:CDS | 30.0% |
| !! | TTCCAAGTTTTGATGTTGAT+GGG | + | chr7.1:37639933-37639952 | None:intergenic | 30.0% |
| !! | TTGATTCAAAGTCGATTTTC+TGG | - | chr7.1:37641266-37641285 | MS.gene89289:CDS | 30.0% |
| !! | TTTCCAAGTTTTGATGTTGA+TGG | + | chr7.1:37639934-37639953 | None:intergenic | 30.0% |
| !!! | CATCGCTTTTTTATTATCTG+AGG | + | chr7.1:37639964-37639983 | None:intergenic | 30.0% |
| !!! | GTAGAGTATTGTTTGTTTTG+TGG | - | chr7.1:37640820-37640839 | MS.gene89289:intron | 30.0% |
| ACAATGGAAGGGTGATTTAA+AGG | - | chr7.1:37640164-37640183 | MS.gene89289:CDS | 35.0% | |
| ATGTAAATATCTTGACGTCC+AGG | + | chr7.1:37640587-37640606 | None:intergenic | 35.0% | |
| ATTTCTTGTAGGTGAAGATG+AGG | - | chr7.1:37641718-37641737 | MS.gene89289:CDS | 35.0% | |
| CAATCAACTCAAAACAAGCA+GGG | - | chr7.1:37641065-37641084 | MS.gene89289:CDS | 35.0% | |
| CGAAGAAGGAAATTGAGTAT+TGG | - | chr7.1:37639459-37639478 | MS.gene89289:CDS | 35.0% | |
| GAAAAATGGAGACAATGGAA+GGG | - | chr7.1:37640153-37640172 | MS.gene89289:CDS | 35.0% | |
| GATAGAGTTAAGACTATGGA+GGG | - | chr7.1:37641221-37641240 | MS.gene89289:CDS | 35.0% | |
| GCTGTTAATACAAAAGCAGT+TGG | + | chr7.1:37640936-37640955 | None:intergenic | 35.0% | |
| TATCAGGATGTCCATTGTAT+GGG | - | chr7.1:37640426-37640445 | MS.gene89289:intron | 35.0% | |
| TCAATCAACTCAAAACAAGC+AGG | - | chr7.1:37641064-37641083 | MS.gene89289:CDS | 35.0% | |
| TCAGATTCAACAAATGTGCA+AGG | - | chr7.1:37639528-37639547 | MS.gene89289:intron | 35.0% | |
| TCTCGCAATTCATCAGTTAT+TGG | + | chr7.1:37640111-37640130 | None:intergenic | 35.0% | |
| TGAAAAATGGAGACAATGGA+AGG | - | chr7.1:37640152-37640171 | MS.gene89289:CDS | 35.0% | |
| TGAATCTGAATTTGTGGGAA+GGG | + | chr7.1:37639517-37639536 | None:intergenic | 35.0% | |
| TGATAGAGTTAAGACTATGG+AGG | - | chr7.1:37641220-37641239 | MS.gene89289:CDS | 35.0% | |
| TGCTTTATCATGTTAGCAAC+AGG | - | chr7.1:37640863-37640882 | MS.gene89289:intron | 35.0% | |
| TTCTTCTTCAGCTTCTATGT+CGG | + | chr7.1:37639637-37639656 | None:intergenic | 35.0% | |
| TTGAATCTGAATTTGTGGGA+AGG | + | chr7.1:37639518-37639537 | None:intergenic | 35.0% | |
| !! | GAAAAGGCATTAGAGTTTCT+TGG | + | chr7.1:37640963-37640982 | None:intergenic | 35.0% |
| AACAATACTCTACTCACTCC+TGG | + | chr7.1:37640813-37640832 | None:intergenic | 40.0% | |
| ACAAATGTGCAAGGACTCAA+TGG | - | chr7.1:37639537-37639556 | MS.gene89289:intron | 40.0% | |
| ACAATGGACATCCTGATACT+TGG | + | chr7.1:37640424-37640443 | None:intergenic | 40.0% | |
| AGTGAGATTCTACAGACTCA+TGG | + | chr7.1:37639605-37639624 | None:intergenic | 40.0% | |
| ATCAGGATGTCCATTGTATG+GGG | - | chr7.1:37640427-37640446 | MS.gene89289:intron | 40.0% | |
| ATGTCATCCTTCCAAGACAT+AGG | + | chr7.1:37641092-37641111 | None:intergenic | 40.0% | |
| ATTGACGAAGCTCAATATCG+TGG | - | chr7.1:37640255-37640274 | MS.gene89289:intron | 40.0% | |
| CACCCATCAACATCAAAACT+TGG | - | chr7.1:37639928-37639947 | MS.gene89289:CDS | 40.0% | |
| CGCAATTCATCAGTTATTGG+AGG | + | chr7.1:37640108-37640127 | None:intergenic | 40.0% | |
| GAAGAAGAACGTATTGTCGA+AGG | - | chr7.1:37639651-37639670 | MS.gene89289:intron | 40.0% | |
| GAATTGAGTTACGTGATGCT+AGG | - | chr7.1:37640232-37640251 | MS.gene89289:intron | 40.0% | |
| GATAACTATGGACGACCAAT+TGG | - | chr7.1:37639846-37639865 | MS.gene89289:intron | 40.0% | |
| GATAATACAAGCTGCTAGAC+AGG | - | chr7.1:37641304-37641323 | MS.gene89289:CDS | 40.0% | |
| GCGTGATAGAGTTAAGACTA+TGG | - | chr7.1:37641217-37641236 | MS.gene89289:CDS | 40.0% | |
| GTATCAGGATGTCCATTGTA+TGG | - | chr7.1:37640425-37640444 | MS.gene89289:intron | 40.0% | |
| TGAAGATGAGGAGGCTAATA+TGG | - | chr7.1:37641730-37641749 | MS.gene89289:CDS | 40.0% | |
| TTGACGAAGCTCAATATCGT+GGG | - | chr7.1:37640256-37640275 | MS.gene89289:intron | 40.0% | |
| TTGCACTTGCTTTCTGCAAT+TGG | + | chr7.1:37640383-37640402 | None:intergenic | 40.0% | |
| TTGGTGAGATATGGAAAACC+AGG | - | chr7.1:37640792-37640811 | MS.gene89289:CDS | 40.0% | |
| ! | ATTGGACTAGGGGAATTCAA+AGG | + | chr7.1:37641576-37641595 | None:intergenic | 40.0% |
| ! | GACTTTTTGTCCCCATACAA+TGG | + | chr7.1:37640440-37640459 | None:intergenic | 40.0% |
| ! | TCGTTGAATTTTACTCGTGG+TGG | - | chr7.1:37641451-37641470 | MS.gene89289:intron | 40.0% |
| ! | TTGGACTAGGGGAATTCAAA+GGG | + | chr7.1:37641575-37641594 | None:intergenic | 40.0% |
| !! | ATCGTGGGTTGGTTGAATAT+TGG | - | chr7.1:37640271-37640290 | MS.gene89289:intron | 40.0% |
| AAGGGTGATTTAAAGGCAGC+TGG | - | chr7.1:37640171-37640190 | MS.gene89289:intron | 45.0% | |
| ACGAAATCGTGCCAAGTATC+AGG | - | chr7.1:37640410-37640429 | MS.gene89289:intron | 45.0% | |
| AGCGATGCTGGAACAAATAG+AGG | - | chr7.1:37639977-37639996 | MS.gene89289:CDS | 45.0% | |
| AGCTTCTATGTCGGAAGGAA+TGG | + | chr7.1:37639628-37639647 | None:intergenic | 45.0% | |
| AGTACAAGGAGCTGCAAAGA+AGG | - | chr7.1:37641121-37641140 | MS.gene89289:intron | 45.0% | |
| CTAGGGGAATTCAAAGGGTT+AGG | + | chr7.1:37641570-37641589 | None:intergenic | 45.0% | |
| GAAACTCGCACACGTAAAGA+TGG | - | chr7.1:37640608-37640627 | MS.gene89289:CDS | 45.0% | |
| GAAGAACCTAAACGACGTAG+AGG | - | chr7.1:37639765-37639784 | MS.gene89289:intron | 45.0% | |
| GTACAAGGAGCTGCAAAGAA+GGG | - | chr7.1:37641122-37641141 | MS.gene89289:intron | 45.0% | |
| GTTGGCAATCAGGCATGAAA+AGG | + | chr7.1:37640979-37640998 | None:intergenic | 45.0% | |
| TACAAGGAGCTGCAAAGAAG+GGG | - | chr7.1:37641123-37641142 | MS.gene89289:intron | 45.0% | |
| TCTTCAGCTTCTATGTCGGA+AGG | + | chr7.1:37639633-37639652 | None:intergenic | 45.0% | |
| TCTTGTAGGTGAAGATGAGG+AGG | - | chr7.1:37641721-37641740 | MS.gene89289:CDS | 45.0% | |
| ! | AATGGTGCAGAAACTGGTTC+TGG | - | chr7.1:37639555-37639574 | MS.gene89289:intron | 45.0% |
| ! | ACGGCTTTTACCCGTTTCTT+AGG | - | chr7.1:37639879-37639898 | MS.gene89289:intron | 45.0% |
| AAGGGAAAAGGAGTGATGCC+TGG | - | chr7.1:37640566-37640585 | MS.gene89289:CDS | 50.0% | |
| ACAAGCAGGGTCCTATGTCT+TGG | - | chr7.1:37641078-37641097 | MS.gene89289:CDS | 50.0% | |
| CGAAGCTCAATATCGTGGGT+TGG | - | chr7.1:37640260-37640279 | MS.gene89289:intron | 50.0% | |
| GGACTCAATGGTGCAGAAAC+TGG | - | chr7.1:37639549-37639568 | MS.gene89289:intron | 50.0% | |
| GTTGGACCTCTACGTCGTTT+AGG | + | chr7.1:37639774-37639793 | None:intergenic | 50.0% | |
| !! | ACCAATTGGTGACGAAGGGA+CGG | - | chr7.1:37639860-37639879 | MS.gene89289:intron | 50.0% |
| !! | GACGACCAATTGGTGACGAA+GGG | - | chr7.1:37639856-37639875 | MS.gene89289:intron | 50.0% |
| GCAGGGTCCTATGTCTTGGA+AGG | - | chr7.1:37641082-37641101 | MS.gene89289:CDS | 55.0% | |
| ! | AAGGGGCGTGTGCGATGTAT+AGG | - | chr7.1:37641140-37641159 | MS.gene89289:intron | 55.0% |
| !! | GGACGACCAATTGGTGACGA+AGG | - | chr7.1:37639855-37639874 | MS.gene89289:intron | 55.0% |
| GCCGTCCCTTCGTCACCAAT+TGG | + | chr7.1:37639864-37639883 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 37639453 | 37641760 | 37639453 | ID=MS.gene89289 |
| chr7.1 | mRNA | 37639453 | 37641760 | 37639453 | ID=MS.gene89289.t1;Parent=MS.gene89289 |
| chr7.1 | exon | 37641541 | 37641760 | 37641541 | ID=MS.gene89289.t1.exon1;Parent=MS.gene89289.t1 |
| chr7.1 | CDS | 37641541 | 37641760 | 37641541 | ID=cds.MS.gene89289.t1;Parent=MS.gene89289.t1 |
| chr7.1 | exon | 37641215 | 37641444 | 37641215 | ID=MS.gene89289.t1.exon2;Parent=MS.gene89289.t1 |
| chr7.1 | CDS | 37641215 | 37641444 | 37641215 | ID=cds.MS.gene89289.t1;Parent=MS.gene89289.t1 |
| chr7.1 | exon | 37640902 | 37641126 | 37640902 | ID=MS.gene89289.t1.exon3;Parent=MS.gene89289.t1 |
| chr7.1 | CDS | 37640902 | 37641126 | 37640902 | ID=cds.MS.gene89289.t1;Parent=MS.gene89289.t1 |
| chr7.1 | exon | 37640731 | 37640823 | 37640731 | ID=MS.gene89289.t1.exon4;Parent=MS.gene89289.t1 |
| chr7.1 | CDS | 37640731 | 37640823 | 37640731 | ID=cds.MS.gene89289.t1;Parent=MS.gene89289.t1 |
| chr7.1 | exon | 37640549 | 37640653 | 37640549 | ID=MS.gene89289.t1.exon5;Parent=MS.gene89289.t1 |
| chr7.1 | CDS | 37640549 | 37640653 | 37640549 | ID=cds.MS.gene89289.t1;Parent=MS.gene89289.t1 |
| chr7.1 | exon | 37639888 | 37640187 | 37639888 | ID=MS.gene89289.t1.exon6;Parent=MS.gene89289.t1 |
| chr7.1 | CDS | 37639888 | 37640187 | 37639888 | ID=cds.MS.gene89289.t1;Parent=MS.gene89289.t1 |
| chr7.1 | exon | 37639595 | 37639667 | 37639595 | ID=MS.gene89289.t1.exon7;Parent=MS.gene89289.t1 |
| chr7.1 | CDS | 37639595 | 37639667 | 37639595 | ID=cds.MS.gene89289.t1;Parent=MS.gene89289.t1 |
| chr7.1 | exon | 37639453 | 37639484 | 37639453 | ID=MS.gene89289.t1.exon8;Parent=MS.gene89289.t1 |
| chr7.1 | CDS | 37639453 | 37639484 | 37639453 | ID=cds.MS.gene89289.t1;Parent=MS.gene89289.t1 |
| Gene Sequence |
| Protein sequence |
