AlfalfaGEDB | MS.gene89289

M. sativa cultivar XinJiangDaYe / MS.gene89289

KEGG: -
GO: -
PFAM: PF03004.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89289.t1	XP_024634947.1	93.4	396	25	1	1	395	1	396	1.20E-205	725.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89289.t1	A0A1S2Z1G2	70.0	397	115	3	1	395	1	395	3.7e-151	544.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051613	MS.gene89289	0.810556	1.09E-50	-1.69E-46
MS.gene052447	MS.gene89289	0.827038	1.95E-54	-1.69E-46
MS.gene060134	MS.gene89289	0.828778	7.44E-55	-1.69E-46
MS.gene060135	MS.gene89289	0.815068	1.12E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89289.t1	MTR_2g021870	92.208	77	6	0	336	412	1	77	4.45e-42	143
MS.gene89289.t1	MTR_4g035745	86.538	52	7	0	84	135	1	52	7.22e-27	102
MS.gene89289.t1	MTR_4g125750	48.810	84	43	0	283	366	114	197	5.56e-17	79.3
MS.gene89289.t1	MTR_5g061300	25.806	217	129	8	97	289	73	281	8.99e-13	69.3
MS.gene89289.t1	MTR_6g012560	53.125	64	23	1	337	393	109	172	1.83e-11	63.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89289.t1	AT1G40087	27.666	347	221	12	86	416	56	388	1.45e-23	102
MS.gene89289.t1	AT3G30200	25.589	297	198	11	105	397	193	470	3.68e-13	71.6

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Find 79 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAGAATGTTAGATATAT+GGG	0.370254	7.1:-37641400	MS.gene89289:CDS
AACAATACTACCTAAGAAAC+GGG	0.459809	7.1:+37641302	None:intergenic
AAGGGAAAAGGAGTGATGCC+TGG	0.537898	7.1:-37640625	MS.gene89289:CDS
AAGGGGCGTGTGCGATGTAT+AGG	0.410197	7.1:-37640051	MS.gene89289:CDS
AAGGGTGATTTAAAGGCAGC+TGG	0.488397	7.1:-37641020	MS.gene89289:CDS
AATAATGAAGATAATGAAAA+TGG	0.293353	7.1:-37639594	MS.gene89289:intron
AATGGTGCAGAAACTGGTTC+TGG	0.500925	7.1:-37641636	MS.gene89289:CDS
AATGTTAGATATATGGGAAT+TGG	0.359232	7.1:-37641394	MS.gene89289:CDS
ACAAATGTGCAAGGACTCAA+TGG	0.507954	7.1:-37641654	MS.gene89289:CDS
ACAAGCAGGGTCCTATGTCT+TGG	0.485224	7.1:-37640113	MS.gene89289:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAACATAGTAATGAGGC+TGG	-	chr7.1:37641035-37641054	MS.gene89289:CDS	30.0%
AACAATACTACCTAAGAAAC+GGG	+	chr7.1:37639892-37639911	None:intergenic	30.0%
ACAGTAGATGAAATTGTATC+TGG	-	chr7.1:37640210-37640229	MS.gene89289:intron	30.0%
AGATAATAAAAAAGCGATGC+TGG	-	chr7.1:37639965-37639984	MS.gene89289:CDS	30.0%
ATGACACTTTCTGTATGATT+AGG	+	chr7.1:37639582-37639601	None:intergenic	30.0%
ATTAAAAACAGTTGGCAATC+AGG	+	chr7.1:37640989-37641008	None:intergenic	30.0%
CATCGAGAAAATAACAATGA+AGG	-	chr7.1:37639483-37639502	MS.gene89289:intron	30.0%
GAAGAAGGAAATTGAGTATT+GGG	-	chr7.1:37639460-37639479	MS.gene89289:CDS	30.0%
GTTCTTCATTCACAAGTAAA+AGG	+	chr7.1:37639752-37639771	None:intergenic	30.0%
TCTTAGGTAGTATTGTTAGA+AGG	-	chr7.1:37639895-37639914	MS.gene89289:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	37639453	37641760	37639453	ID=MS.gene89289
chr7.1	mRNA	37639453	37641760	37639453	ID=MS.gene89289.t1;Parent=MS.gene89289
chr7.1	exon	37641541	37641760	37641541	ID=MS.gene89289.t1.exon1;Parent=MS.gene89289.t1
chr7.1	CDS	37641541	37641760	37641541	ID=cds.MS.gene89289.t1;Parent=MS.gene89289.t1
chr7.1	exon	37641215	37641444	37641215	ID=MS.gene89289.t1.exon2;Parent=MS.gene89289.t1
chr7.1	CDS	37641215	37641444	37641215	ID=cds.MS.gene89289.t1;Parent=MS.gene89289.t1
chr7.1	exon	37640902	37641126	37640902	ID=MS.gene89289.t1.exon3;Parent=MS.gene89289.t1
chr7.1	CDS	37640902	37641126	37640902	ID=cds.MS.gene89289.t1;Parent=MS.gene89289.t1
chr7.1	exon	37640731	37640823	37640731	ID=MS.gene89289.t1.exon4;Parent=MS.gene89289.t1
chr7.1	CDS	37640731	37640823	37640731	ID=cds.MS.gene89289.t1;Parent=MS.gene89289.t1
chr7.1	exon	37640549	37640653	37640549	ID=MS.gene89289.t1.exon5;Parent=MS.gene89289.t1
chr7.1	CDS	37640549	37640653	37640549	ID=cds.MS.gene89289.t1;Parent=MS.gene89289.t1
chr7.1	exon	37639888	37640187	37639888	ID=MS.gene89289.t1.exon6;Parent=MS.gene89289.t1
chr7.1	CDS	37639888	37640187	37639888	ID=cds.MS.gene89289.t1;Parent=MS.gene89289.t1
chr7.1	exon	37639595	37639667	37639595	ID=MS.gene89289.t1.exon7;Parent=MS.gene89289.t1
chr7.1	CDS	37639595	37639667	37639595	ID=cds.MS.gene89289.t1;Parent=MS.gene89289.t1
chr7.1	exon	37639453	37639484	37639453	ID=MS.gene89289.t1.exon8;Parent=MS.gene89289.t1
chr7.1	CDS	37639453	37639484	37639453	ID=cds.MS.gene89289.t1;Parent=MS.gene89289.t1

Gene Sequence

>MS.gene89289

ATGGCTCGAAGAAGGAAATTGAGTATTGGGCATCGAGAAAATAACAATGAAGGAAGACAGTCCCTTCCCACAAATTCAGATTCAACAAATGTGCAAGGACTCAATGGTGCAGAAACTGGTTCTGGTCCTAATCATACAGAAAGTGTCATCCATGAGTCTGTAGAATCTCACTCCATTCCTTCCGACATAGAAGCTGAAGAAGAAGAACGTATTGTCGAAGGTATAAATTATATACCATTTTCTATTTTGTTCATTTGTGTTATTATTTGAATATGTTTTTATGTTATTATGTCTTTCCTTTTACTTGTGAATGAAGAACCTAAACGACGTAGAGGTCCAACAAGAATGTTAGATATATGGGAATTGGATGATGATTTCATCATTGTTAAGTTGGATAACTATGGACGACCAATTGGTGACGAAGGGACGGCTTTTACCCGTTTCTTAGGTAGTATTGTTAGAAGGTCTCAATATGCACCCATCAACATCAAAACTTGGAAAGATATGCCCTCAGATAATAAAAAAGCGATGCTGGAACAAATAGAGGTATTAAGTTTGCAAGTTTTTTAATTATTTGTGTATCAGAATTTGTAATATAACTTACATTTTTTATTTAACATCTCTCAATGTGTAGAAACGATTTGAGTTTGTTCCTCCAATAACTGATGAATTGCGAGAAATTATAAAATCTGATTTGAATGAAAAATGGAGACAATGGAAGGGTGATTTAAAGGCAGCTGGATTTGACTCAAGTAAAACAGTAGATGAAATTGTATCTGGAATTGAGTTACGTGATGCTAGGATTGACGAAGCTCAATATCGTGGGTTGGTTGAATATTGGTTCTCTGATGAAGCAAAAGTAAGTCCAAGTCATACATATTATACGTAATACACTAAAATACGTATCATTATGACTAATATTTTATACCAATTGCAGAAAGCAAGTGCAATCAATAAACGAAATCGTGCCAAGTATCAGGATGTCCATTGTATGGGGACAAAAAGTCTCCCAAAATTTATTGATGAAAAGGTTTGATTTTTGTATTTTTCATTGGATGAGCTGTATTTAAAAACAATAAACCTATAACATGTTTGTTTGGTTTTTAGATGAAAAAGGGAAAAGGAGTGATGCCTGGACGTCAAGATATTTACATTGAAACTCGCACACGTAAAGATGGTTCAATTGTCAATGAAAAAGCTGCAAGAATGATTGTAAGCATCTAACATTTTTGGAACGCAGAATGATTCTCAGTTTTTCTGAATTTTGAATCGAATGCCTGTTATACCATTTGAAAGTATGATATCTTGCTGCTGTTTGATTTCTTGTAGTAACTATGATTTGGTGAGATATGGAAAACCAGGAGTGAGTAGAGTATTGTTTGTTTTGTGGCTTGTAAAATATAGTTTAGGTGCTTTATCATGTTAGCAACAGGATCAACAAATTAAATGCTTGAGTAAATATTTTTGTCACTATGTTTTGCCAACTGCTTTTGTATTAACAGCAGCGCCAAGAAACTCTAATGCCTTTTCATGCCTGATTGCCAACTGTTTTTAATTCTGTTTTGGGTTTTAGGAAGAACTAAAAAAACATAGTAATGAGGCTGGAACATCTCAATCAACTCAAAACAAGCAGGGTCCTATGTCTTGGAAGGATGACATATTTTCTAAAGTACAAGGAGCTGCAAAGAAGGGGCGTGTGCGATGTATAGGAAAGTTACCTAAATCTAAAAAATCAAAGGTTTATTTGTCTGAAAATGAAGAGCTGCGTGATAGAGTTAAGACTATGGAGGGCTTGTTAGCAAATGTCATGACTTTGATTCAAAGTCGATTTTCTGGAGAAGATGTGAATGAGATAATACAAGCTGCTAGACAGGTACTTCTGAATTTACTAATCTTCATATAAAAATACAAGTTGCTTCATTGATTTAAGAGAACATGGAATTTATATAATTACATGTTTATGAAAACAATGCTAGTTTTTTGTTTGAGTCACACAATTCGTTGAATTTTACTCGTGGTGGTTCGCACCATTTAGCAATACTCTTGATTTAATACTAATCTTTATCTGCAATTTTCGATTTTATGTGATATAGGTTACTGATGCTTCTAGTGTTCCTAACCCTTTGAATTCCCCTAGTCCAATCAATAATGAAGATAATGAAAATGGTATTCAATTAAATATCACTGAAGTTGTTAATATTTTCTTTGTTTTTTAGGAGTGATATTCTCAATGATGAATTGTGTTATTATTCATCTTTTCTTTTTATTTCTTGTAGGTGAAGATGAGGAGGCTAATATGGAGACTTGA

Protein sequence

>MS.gene89289.t1

MARRRKLSIGHRENNNEGRQSLPTNSDSTNVQGLNGAETGSGPNHTESVIHESVESHSIPSDIEAEEEERIVEEPKRRRGPTRMLDIWELDDDFIIVKLDNYGRPIGDEGTAFTRFLGSIVRRSQYAPINIKTWKDMPSDNKKAMLEQIEKRFEFVPPITDELREIIKSDLNEKWRQWKGDLKAAGFDSSKTVDEIVSGIELRDARIDEAQYRGLVEYWFSDEAKKASAINKRNRAKYQDVHCMGTKSLPKFIDEKMKKGKGVMPGRQDIYIETRTRKDGSIVNEKAARMIEELKKHSNEAGTSQSTQNKQGPMSWKDDIFSKVQGAAKKGRVRCIGKLPKSKKSKVYLSENEELRDRVKTMEGLLANVMTLIQSRFSGEDVNEIIQAARQVTDASSVPNPLNSPSPINNEDNENGEDEEANMET