Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89856.t1 | XP_013453519.1 | 100 | 183 | 0 | 0 | 1 | 183 | 1 | 183 | 5.90E-104 | 386.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89856.t1 | Q9SDY5 | 85.9 | 184 | 25 | 1 | 1 | 183 | 1 | 184 | 5.8e-92 | 338.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89856.t1 | G7KC51 | 100.0 | 183 | 0 | 0 | 1 | 183 | 4 | 186 | 4.2e-104 | 386.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050623 | MS.gene89856 | 0.812357 | 4.42E-51 | -1.69E-46 |
MS.gene050807 | MS.gene89856 | -0.814754 | 1.31E-51 | -1.69E-46 |
MS.gene052309 | MS.gene89856 | 0.854413 | 1.25E-61 | -1.69E-46 |
MS.gene052358 | MS.gene89856 | 0.813017 | 3.17E-51 | -1.69E-46 |
MS.gene052673 | MS.gene89856 | 0.859491 | 3.99E-63 | -1.69E-46 |
MS.gene05954 | MS.gene89856 | -0.834521 | 2.86E-56 | -1.69E-46 |
MS.gene060137 | MS.gene89856 | 0.86411 | 1.54E-64 | -1.69E-46 |
MS.gene060634 | MS.gene89856 | 0.866961 | 1.94E-65 | -1.69E-46 |
MS.gene061040 | MS.gene89856 | 0.82101 | 5.07E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89856.t1 | MTR_5g019480 | 100.000 | 183 | 0 | 0 | 1 | 183 | 4 | 186 | 2.48e-138 | 383 |
MS.gene89856.t1 | MTR_5g019480 | 100.000 | 183 | 0 | 0 | 1 | 183 | 1 | 183 | 3.03e-138 | 383 |
MS.gene89856.t1 | MTR_5g019480 | 100.000 | 135 | 0 | 0 | 49 | 183 | 1 | 135 | 7.99e-101 | 286 |
MS.gene89856.t1 | MTR_4g073240 | 38.971 | 136 | 80 | 2 | 33 | 166 | 5 | 139 | 2.32e-28 | 103 |
MS.gene89856.t1 | MTR_1g021150 | 36.765 | 136 | 83 | 2 | 33 | 166 | 5 | 139 | 5.18e-27 | 100 |
MS.gene89856.t1 | MTR_5g075580 | 36.765 | 136 | 83 | 2 | 33 | 166 | 5 | 139 | 3.17e-26 | 98.2 |
MS.gene89856.t1 | MTR_3g062450 | 36.765 | 136 | 83 | 2 | 33 | 166 | 5 | 139 | 3.38e-26 | 98.2 |
MS.gene89856.t1 | MTR_8g071040 | 35.766 | 137 | 83 | 3 | 33 | 166 | 5 | 139 | 5.03e-26 | 97.4 |
MS.gene89856.t1 | MTR_7g116940 | 36.029 | 136 | 84 | 2 | 33 | 166 | 5 | 139 | 7.26e-26 | 97.1 |
MS.gene89856.t1 | MTR_4g073240 | 42.308 | 104 | 60 | 0 | 63 | 166 | 7 | 110 | 7.31e-26 | 96.3 |
MS.gene89856.t1 | MTR_1g021150 | 38.261 | 115 | 71 | 0 | 52 | 166 | 33 | 147 | 5.76e-25 | 95.1 |
MS.gene89856.t1 | MTR_5g075580 | 40.385 | 104 | 62 | 0 | 63 | 166 | 7 | 110 | 1.44e-24 | 92.8 |
MS.gene89856.t1 | MTR_7g116940 | 34.965 | 143 | 83 | 3 | 33 | 166 | 5 | 146 | 1.01e-23 | 92.0 |
MS.gene89856.t1 | MTR_2g078010 | 38.333 | 120 | 66 | 2 | 54 | 172 | 30 | 142 | 1.35e-21 | 86.3 |
MS.gene89856.t1 | MTR_2g078010 | 40.000 | 105 | 62 | 1 | 54 | 157 | 30 | 134 | 2.53e-21 | 85.5 |
MS.gene89856.t1 | MTR_4g108080 | 27.778 | 144 | 103 | 1 | 33 | 175 | 8 | 151 | 6.68e-21 | 84.3 |
MS.gene89856.t1 | MTR_8g468530 | 24.837 | 153 | 114 | 1 | 24 | 175 | 15 | 167 | 3.87e-20 | 82.8 |
MS.gene89856.t1 | MTR_4g108080 | 30.275 | 109 | 76 | 0 | 67 | 175 | 43 | 151 | 2.11e-19 | 80.5 |
MS.gene89856.t1 | MTR_7g116940 | 39.000 | 100 | 58 | 2 | 33 | 130 | 5 | 103 | 5.82e-19 | 79.0 |
MS.gene89856.t1 | MTR_2g078010 | 37.500 | 104 | 59 | 1 | 54 | 157 | 51 | 148 | 3.70e-18 | 77.8 |
MS.gene89856.t1 | MTR_4g076200 | 32.090 | 134 | 87 | 2 | 33 | 162 | 36 | 169 | 5.86e-18 | 77.4 |
MS.gene89856.t1 | MTR_4g076200 | 38.144 | 97 | 57 | 1 | 69 | 162 | 32 | 128 | 6.60e-18 | 76.3 |
MS.gene89856.t1 | MTR_5g009020 | 38.824 | 85 | 52 | 0 | 69 | 153 | 73 | 157 | 8.48e-18 | 77.0 |
MS.gene89856.t1 | MTR_3g110110 | 30.075 | 133 | 89 | 3 | 29 | 157 | 3 | 135 | 1.43e-17 | 75.9 |
MS.gene89856.t1 | MTR_1g095510 | 33.962 | 106 | 70 | 0 | 51 | 156 | 65 | 170 | 3.82e-17 | 75.5 |
MS.gene89856.t1 | MTR_1g095510 | 33.962 | 106 | 70 | 0 | 51 | 156 | 11 | 116 | 4.15e-17 | 74.3 |
MS.gene89856.t1 | MTR_4g106690 | 33.043 | 115 | 74 | 3 | 56 | 167 | 27 | 141 | 8.46e-17 | 74.7 |
MS.gene89856.t1 | MTR_4g073240 | 41.892 | 74 | 43 | 0 | 93 | 166 | 4 | 77 | 2.04e-16 | 70.9 |
MS.gene89856.t1 | MTR_2g078010 | 43.590 | 78 | 43 | 1 | 54 | 130 | 30 | 107 | 9.55e-16 | 70.1 |
MS.gene89856.t1 | MTR_4g063490 | 30.833 | 120 | 70 | 1 | 63 | 169 | 40 | 159 | 1.45e-15 | 70.9 |
MS.gene89856.t1 | MTR_8g028920 | 33.000 | 100 | 65 | 2 | 70 | 167 | 3 | 102 | 1.19e-14 | 68.2 |
MS.gene89856.t1 | MTR_8g028920 | 34.615 | 104 | 64 | 4 | 67 | 167 | 39 | 141 | 1.24e-14 | 68.9 |
MS.gene89856.t1 | MTR_3g098780 | 32.743 | 113 | 74 | 2 | 56 | 166 | 30 | 142 | 2.93e-14 | 68.2 |
MS.gene89856.t1 | MTR_3g098780 | 32.743 | 113 | 74 | 2 | 56 | 166 | 54 | 166 | 3.47e-14 | 68.2 |
MS.gene89856.t1 | MTR_8g098595 | 31.068 | 103 | 69 | 2 | 67 | 167 | 24 | 126 | 5.09e-14 | 66.6 |
MS.gene89856.t1 | MTR_2g096690 | 30.000 | 120 | 71 | 1 | 63 | 169 | 40 | 159 | 5.60e-14 | 66.6 |
MS.gene89856.t1 | MTR_4g108080 | 28.972 | 107 | 75 | 1 | 33 | 138 | 8 | 114 | 8.63e-14 | 65.1 |
MS.gene89856.t1 | MTR_4g094872 | 29.915 | 117 | 79 | 2 | 53 | 166 | 33 | 149 | 2.51e-13 | 64.7 |
MS.gene89856.t1 | MTR_8g085690 | 30.709 | 127 | 82 | 3 | 23 | 147 | 16 | 138 | 4.87e-13 | 64.3 |
MS.gene89856.t1 | MTR_2g096690 | 30.000 | 120 | 70 | 2 | 63 | 169 | 40 | 158 | 1.29e-12 | 63.2 |
MS.gene89856.t1 | MTR_7g087590 | 33.684 | 95 | 63 | 0 | 72 | 166 | 54 | 148 | 1.48e-12 | 64.3 |
MS.gene89856.t1 | MTR_5g016630 | 28.571 | 119 | 82 | 2 | 52 | 167 | 32 | 150 | 1.62e-12 | 62.8 |
MS.gene89856.t1 | MTR_1g095510 | 27.523 | 109 | 77 | 1 | 33 | 139 | 45 | 153 | 9.29e-11 | 58.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89856.t1 | AT4G36800 | 85.870 | 184 | 25 | 1 | 1 | 183 | 1 | 184 | 1.83e-120 | 338 |
MS.gene89856.t1 | AT4G36800 | 85.870 | 184 | 25 | 1 | 1 | 183 | 1 | 184 | 1.83e-120 | 338 |
MS.gene89856.t1 | AT2G18600 | 83.243 | 185 | 29 | 1 | 1 | 183 | 1 | 185 | 1.60e-113 | 320 |
MS.gene89856.t1 | AT2G18600 | 83.243 | 185 | 29 | 1 | 1 | 183 | 1 | 185 | 1.60e-113 | 320 |
MS.gene89856.t1 | AT5G56150 | 36.029 | 136 | 84 | 2 | 33 | 166 | 5 | 139 | 1.08e-26 | 99.4 |
MS.gene89856.t1 | AT3G08690 | 37.500 | 136 | 82 | 2 | 33 | 166 | 5 | 139 | 3.04e-26 | 98.2 |
MS.gene89856.t1 | AT3G08690 | 37.500 | 136 | 82 | 2 | 33 | 166 | 5 | 139 | 3.04e-26 | 98.2 |
MS.gene89856.t1 | AT4G27960 | 36.765 | 136 | 83 | 2 | 33 | 166 | 5 | 139 | 3.25e-26 | 98.2 |
MS.gene89856.t1 | AT2G16740 | 36.765 | 136 | 83 | 2 | 33 | 166 | 5 | 139 | 3.39e-26 | 98.2 |
MS.gene89856.t1 | AT5G41700 | 35.294 | 136 | 86 | 1 | 33 | 166 | 5 | 140 | 3.80e-26 | 97.8 |
MS.gene89856.t1 | AT1G64230 | 36.029 | 136 | 84 | 2 | 33 | 166 | 5 | 139 | 5.44e-26 | 97.4 |
MS.gene89856.t1 | AT1G64230 | 36.029 | 136 | 84 | 2 | 33 | 166 | 5 | 139 | 5.44e-26 | 97.4 |
MS.gene89856.t1 | AT5G53300 | 36.029 | 136 | 84 | 2 | 33 | 166 | 5 | 139 | 9.63e-26 | 97.1 |
MS.gene89856.t1 | AT5G53300 | 36.029 | 136 | 84 | 2 | 33 | 166 | 5 | 139 | 9.63e-26 | 97.1 |
MS.gene89856.t1 | AT5G53300 | 36.029 | 136 | 84 | 2 | 33 | 166 | 5 | 139 | 9.63e-26 | 97.1 |
MS.gene89856.t1 | AT4G27960 | 36.765 | 136 | 83 | 2 | 33 | 166 | 35 | 169 | 1.78e-25 | 97.1 |
MS.gene89856.t1 | AT1G64230 | 34.028 | 144 | 85 | 2 | 33 | 166 | 5 | 148 | 2.82e-25 | 95.9 |
MS.gene89856.t1 | AT5G41700 | 35.294 | 136 | 85 | 2 | 33 | 166 | 5 | 139 | 6.26e-25 | 94.7 |
MS.gene89856.t1 | AT5G41700 | 35.294 | 136 | 85 | 2 | 33 | 166 | 5 | 139 | 6.26e-25 | 94.7 |
MS.gene89856.t1 | AT5G41700 | 35.294 | 136 | 85 | 2 | 33 | 166 | 5 | 139 | 6.26e-25 | 94.7 |
MS.gene89856.t1 | AT3G08700 | 34.783 | 138 | 86 | 3 | 33 | 167 | 5 | 141 | 1.16e-24 | 94.0 |
MS.gene89856.t1 | AT3G08700 | 34.783 | 138 | 86 | 3 | 33 | 167 | 5 | 141 | 1.16e-24 | 94.0 |
MS.gene89856.t1 | AT1G64230 | 38.393 | 112 | 68 | 1 | 56 | 166 | 70 | 181 | 2.64e-24 | 94.4 |
MS.gene89856.t1 | AT1G64230 | 38.393 | 112 | 68 | 1 | 56 | 166 | 70 | 181 | 2.64e-24 | 94.4 |
MS.gene89856.t1 | AT5G56150 | 39.815 | 108 | 61 | 3 | 33 | 138 | 5 | 110 | 1.30e-21 | 85.1 |
MS.gene89856.t1 | AT1G78870 | 40.000 | 105 | 62 | 1 | 54 | 157 | 30 | 134 | 2.12e-21 | 85.9 |
MS.gene89856.t1 | AT1G16890 | 39.048 | 105 | 63 | 1 | 54 | 157 | 30 | 134 | 7.24e-21 | 84.3 |
MS.gene89856.t1 | AT1G16890 | 39.048 | 105 | 63 | 1 | 54 | 157 | 39 | 143 | 1.16e-20 | 84.3 |
MS.gene89856.t1 | AT1G16890 | 41.837 | 98 | 56 | 1 | 61 | 157 | 4 | 101 | 1.46e-20 | 82.8 |
MS.gene89856.t1 | AT1G78870 | 41.837 | 98 | 56 | 1 | 61 | 157 | 4 | 101 | 1.61e-20 | 82.8 |
MS.gene89856.t1 | AT2G02760 | 27.083 | 144 | 104 | 1 | 33 | 175 | 8 | 151 | 1.68e-20 | 83.6 |
MS.gene89856.t1 | AT2G02760 | 27.083 | 144 | 104 | 1 | 33 | 175 | 8 | 151 | 1.68e-20 | 83.6 |
MS.gene89856.t1 | AT2G02760 | 27.083 | 144 | 104 | 1 | 33 | 175 | 8 | 151 | 1.68e-20 | 83.6 |
MS.gene89856.t1 | AT2G02760 | 27.083 | 144 | 104 | 1 | 33 | 175 | 8 | 151 | 1.68e-20 | 83.6 |
MS.gene89856.t1 | AT1G14400 | 27.083 | 144 | 104 | 1 | 33 | 175 | 8 | 151 | 6.30e-20 | 82.0 |
MS.gene89856.t1 | AT1G14400 | 27.083 | 144 | 104 | 1 | 33 | 175 | 8 | 151 | 6.30e-20 | 82.0 |
MS.gene89856.t1 | AT5G53300 | 37.500 | 104 | 62 | 2 | 33 | 134 | 5 | 107 | 6.08e-19 | 78.2 |
MS.gene89856.t1 | AT1G78870 | 41.414 | 99 | 56 | 2 | 61 | 157 | 4 | 102 | 9.14e-19 | 78.2 |
MS.gene89856.t1 | AT5G62540 | 27.273 | 143 | 103 | 1 | 33 | 174 | 8 | 150 | 1.63e-18 | 78.2 |
MS.gene89856.t1 | AT3G20060 | 37.500 | 88 | 55 | 0 | 69 | 156 | 32 | 119 | 6.05e-18 | 76.3 |
MS.gene89856.t1 | AT3G20060 | 37.500 | 88 | 55 | 0 | 69 | 156 | 77 | 164 | 9.56e-18 | 77.0 |
MS.gene89856.t1 | AT3G13550 | 32.061 | 131 | 86 | 2 | 17 | 145 | 24 | 153 | 9.97e-18 | 77.0 |
MS.gene89856.t1 | AT3G13550 | 32.540 | 126 | 82 | 2 | 17 | 140 | 24 | 148 | 1.17e-17 | 76.6 |
MS.gene89856.t1 | AT5G41700 | 38.384 | 99 | 58 | 2 | 33 | 129 | 5 | 102 | 1.47e-17 | 75.5 |
MS.gene89856.t1 | AT5G25760 | 30.827 | 133 | 88 | 3 | 29 | 157 | 3 | 135 | 1.62e-17 | 75.9 |
MS.gene89856.t1 | AT5G25760 | 30.827 | 133 | 88 | 3 | 29 | 157 | 3 | 135 | 1.62e-17 | 75.9 |
MS.gene89856.t1 | AT1G36340 | 34.821 | 112 | 72 | 1 | 56 | 166 | 34 | 145 | 2.19e-17 | 75.5 |
MS.gene89856.t1 | AT1G36340 | 34.821 | 112 | 72 | 1 | 56 | 166 | 34 | 145 | 2.19e-17 | 75.5 |
MS.gene89856.t1 | AT5G41340 | 38.462 | 104 | 60 | 4 | 67 | 167 | 39 | 141 | 1.07e-16 | 74.3 |
MS.gene89856.t1 | AT1G50490 | 36.364 | 88 | 56 | 0 | 69 | 156 | 76 | 163 | 1.09e-16 | 74.3 |
MS.gene89856.t1 | AT1G63800 | 37.500 | 104 | 61 | 4 | 67 | 167 | 39 | 141 | 1.75e-16 | 73.9 |
MS.gene89856.t1 | AT1G63800 | 37.500 | 104 | 61 | 4 | 67 | 167 | 24 | 126 | 2.33e-16 | 73.2 |
MS.gene89856.t1 | AT5G41340 | 36.000 | 100 | 62 | 2 | 70 | 167 | 7 | 106 | 5.15e-16 | 71.6 |
MS.gene89856.t1 | AT1G78870 | 43.590 | 78 | 43 | 1 | 54 | 130 | 30 | 107 | 5.53e-16 | 70.5 |
MS.gene89856.t1 | AT3G24515 | 33.607 | 122 | 73 | 2 | 53 | 166 | 36 | 157 | 9.77e-16 | 74.3 |
MS.gene89856.t1 | AT5G50870 | 35.417 | 96 | 61 | 1 | 72 | 166 | 47 | 142 | 1.10e-15 | 72.0 |
MS.gene89856.t1 | AT2G46030 | 34.783 | 115 | 72 | 3 | 56 | 167 | 27 | 141 | 3.16e-15 | 70.5 |
MS.gene89856.t1 | AT2G46030 | 34.783 | 115 | 72 | 3 | 56 | 167 | 27 | 141 | 3.16e-15 | 70.5 |
MS.gene89856.t1 | AT3G24515 | 35.577 | 104 | 63 | 1 | 67 | 166 | 79 | 182 | 4.71e-15 | 72.4 |
MS.gene89856.t1 | AT2G46030 | 34.783 | 115 | 72 | 3 | 56 | 167 | 30 | 144 | 5.87e-15 | 69.7 |
MS.gene89856.t1 | AT2G46030 | 34.783 | 115 | 72 | 3 | 56 | 167 | 30 | 144 | 5.87e-15 | 69.7 |
MS.gene89856.t1 | AT2G46030 | 35.088 | 114 | 71 | 3 | 56 | 166 | 99 | 212 | 7.17e-15 | 70.9 |
MS.gene89856.t1 | AT5G50870 | 38.667 | 75 | 45 | 1 | 72 | 145 | 47 | 121 | 4.93e-14 | 67.8 |
MS.gene89856.t1 | AT3G57870 | 30.769 | 117 | 78 | 2 | 53 | 166 | 34 | 150 | 8.60e-14 | 66.2 |
MS.gene89856.t1 | AT5G59300 | 29.167 | 120 | 72 | 1 | 63 | 169 | 40 | 159 | 4.81e-13 | 64.3 |
MS.gene89856.t1 | AT3G55380 | 29.412 | 119 | 71 | 1 | 64 | 169 | 42 | 160 | 4.95e-13 | 64.3 |
MS.gene89856.t1 | AT3G46460 | 28.333 | 120 | 73 | 1 | 63 | 169 | 40 | 159 | 5.74e-13 | 63.9 |
MS.gene89856.t1 | AT5G05080 | 33.684 | 95 | 63 | 0 | 72 | 166 | 54 | 148 | 8.73e-13 | 65.1 |
MS.gene89856.t1 | AT5G05080 | 33.684 | 95 | 63 | 0 | 72 | 166 | 54 | 148 | 8.73e-13 | 65.1 |
MS.gene89856.t1 | AT5G05080 | 33.684 | 95 | 63 | 0 | 72 | 166 | 54 | 148 | 8.73e-13 | 65.1 |
MS.gene89856.t1 | AT5G05080 | 33.684 | 95 | 63 | 0 | 72 | 166 | 54 | 148 | 8.73e-13 | 65.1 |
MS.gene89856.t1 | AT3G46460 | 27.523 | 109 | 66 | 1 | 74 | 169 | 9 | 117 | 8.17e-11 | 57.4 |
MS.gene89856.t1 | AT3G46460 | 27.523 | 109 | 66 | 1 | 74 | 169 | 9 | 117 | 8.17e-11 | 57.4 |
Find 50 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCCTTCCAAGTCAATATT+TGG | 0.142980 | 5.3:-11137112 | None:intergenic |
TTCAGGGGATCCTCGTAATT+TGG | 0.241596 | 5.3:-11137316 | None:intergenic |
CAGCAGCGGCATCATGATTC+AGG | 0.258270 | 5.3:-11137333 | None:intergenic |
ACATTAGATTCAAACATCTT+TGG | 0.268686 | 5.3:-11137370 | None:intergenic |
CCAGCACTTTGCTTCTTAAC+AGG | 0.282485 | 5.3:-11134853 | None:intergenic |
AGATGACAGTGTTTATATTA+AGG | 0.283684 | 5.3:-11137174 | None:intergenic |
CTTAACAGGTACTCCATTAC+TGG | 0.300967 | 5.3:-11134839 | None:intergenic |
AATATAAACACTGTCATCTA+TGG | 0.349971 | 5.3:+11137178 | MS.gene89856:CDS |
TTTGTCTTGCACTTCACCTT+GGG | 0.370105 | 5.3:-11136964 | None:intergenic |
GGGTGCTTCATGTGGATAGA+TGG | 0.399776 | 5.3:-11136944 | None:intergenic |
GGCAATGTCTGGTGGGTATG+TGG | 0.402485 | 5.3:+11137399 | MS.gene89856:CDS |
CTTTGTCTTGCACTTCACCT+TGG | 0.407733 | 5.3:-11136965 | None:intergenic |
CATCAGGTCATCTTTGCCAT+TGG | 0.416464 | 5.3:-11136600 | None:intergenic |
ATCAGGTCATCTTTGCCATT+GGG | 0.429309 | 5.3:-11136599 | None:intergenic |
TCAAAACTTCGAAGTTCATC+AGG | 0.454455 | 5.3:-11136616 | None:intergenic |
AATTGCATGGTGCAAGACTT+TGG | 0.456157 | 5.3:-11136575 | None:intergenic |
TACAAGTAATATCCATCATC+GGG | 0.483744 | 5.3:-11136644 | None:intergenic |
GAGCATGGTTTACATACAGC+GGG | 0.483927 | 5.3:-11137437 | None:intergenic |
GATTAAACTATTTAAAGTAA+AGG | 0.497569 | 5.3:+11134789 | MS.gene89856:CDS |
TTCACCTTGGGTGCTTCATG+TGG | 0.501905 | 5.3:-11136952 | None:intergenic |
CATCCAAATATTGACTTGGA+AGG | 0.507990 | 5.3:+11137109 | MS.gene89856:CDS |
GCAATGTCTGGTGGGTATGT+GGG | 0.513890 | 5.3:+11137400 | MS.gene89856:CDS |
ACAGTGTTTATATTAAGGAC+AGG | 0.514717 | 5.3:-11137169 | None:intergenic |
TCAACATCTTAAGAGAAGAC+TGG | 0.523814 | 5.3:+11137143 | MS.gene89856:CDS |
TTACAAGTAATATCCATCAT+CGG | 0.536160 | 5.3:-11136645 | None:intergenic |
TGGCTTGTATCATCTCTTCA+CGG | 0.539377 | 5.3:+11137198 | MS.gene89856:CDS |
AGCAGCGGCATCATGATTCA+GGG | 0.539634 | 5.3:-11137332 | None:intergenic |
CTACCATCCAAATATTGACT+TGG | 0.541780 | 5.3:+11137105 | MS.gene89856:CDS |
ATAGATGGGAGACACATTGA+AGG | 0.544925 | 5.3:-11136929 | None:intergenic |
CTTCCAAGTCAATATTTGGA+TGG | 0.548559 | 5.3:-11137108 | None:intergenic |
CAAGCTGAAAATGCCAGTAA+TGG | 0.548896 | 5.3:+11134826 | MS.gene89856:CDS |
TTTGCCATTGGGAAATTGCA+TGG | 0.574210 | 5.3:-11136588 | None:intergenic |
CCTGTTAAGAAGCAAAGTGC+TGG | 0.575364 | 5.3:+11134853 | MS.gene89856:CDS |
AATGTGAGGAGGGCAATGTC+TGG | 0.586922 | 5.3:+11137388 | MS.gene89856:CDS |
GGTGCTTCATGTGGATAGAT+GGG | 0.590678 | 5.3:-11136943 | None:intergenic |
GTGAGGAGGGCAATGTCTGG+TGG | 0.597624 | 5.3:+11137391 | MS.gene89856:CDS |
GTTTGAATCTAATGTGAGGA+GGG | 0.602029 | 5.3:+11137378 | MS.gene89856:CDS |
TGCACCATGCAATTTCCCAA+TGG | 0.605830 | 5.3:+11136584 | MS.gene89856:CDS |
CTATCCACATGAAGCACCCA+AGG | 0.621344 | 5.3:+11136948 | MS.gene89856:CDS |
GGCGAGTTGCGTCTTCACAA+AGG | 0.628980 | 5.3:+11134874 | MS.gene89856:CDS |
TGAGGAGGGCAATGTCTGGT+GGG | 0.629398 | 5.3:+11137392 | MS.gene89856:CDS |
CAAGGTGAAGTGCAAGACAA+AGG | 0.630470 | 5.3:+11136966 | MS.gene89856:CDS |
TGTTTGAATCTAATGTGAGG+AGG | 0.637414 | 5.3:+11137377 | MS.gene89856:CDS |
GCAGCGGCATCATGATTCAG+GGG | 0.671229 | 5.3:-11137331 | None:intergenic |
TGAGCATGGTTTACATACAG+CGG | 0.671953 | 5.3:-11137438 | None:intergenic |
GCATGGTTTACATACAGCGG+GGG | 0.678401 | 5.3:-11137435 | None:intergenic |
AGATGTTTGAATCTAATGTG+AGG | 0.682109 | 5.3:+11137374 | MS.gene89856:CDS |
TGTGCAGGAGCCAAATTACG+AGG | 0.709133 | 5.3:+11137306 | MS.gene89856:intron |
ATTATCTCTCAAGACAGCAG+CGG | 0.713092 | 5.3:-11137347 | None:intergenic |
AGCATGGTTTACATACAGCG+GGG | 0.717629 | 5.3:-11137436 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAGAAAGAAATATATAAAT+AGG | - | chr5.3:11135485-11135504 | None:intergenic | 10.0% |
!! | AAGAAAGAAATATATAAATA+GGG | - | chr5.3:11135484-11135503 | None:intergenic | 10.0% |
!!! | ATGTTGTTTTATTATTTTTT+CGG | + | chr5.3:11135811-11135830 | MS.gene89856:intron | 10.0% |
!! | AAAATAACAAAAAGATAAAG+TGG | - | chr5.3:11136679-11136698 | None:intergenic | 15.0% |
!! | AAGTAAACAATTTAATAAGA+AGG | - | chr5.3:11134903-11134922 | None:intergenic | 15.0% |
!! | AATAAATTACACAAATATCT+TGG | + | chr5.3:11135119-11135138 | MS.gene89856:intron | 15.0% |
!! | AATCACTAATAAAATTACTA+AGG | - | chr5.3:11136285-11136304 | None:intergenic | 15.0% |
!! | ATATTTGTGTAATTTATTTC+TGG | - | chr5.3:11135117-11135136 | None:intergenic | 15.0% |
!!! | AAAATTGATTCTTGTTTTTA+AGG | + | chr5.3:11136718-11136737 | MS.gene89856:intron | 15.0% |
!!! | GATTAAACTATTTAAAGTAA+AGG | + | chr5.3:11134789-11134808 | MS.gene89856:CDS | 15.0% |
!!! | TTTATATCATGTTATTTGTT+TGG | + | chr5.3:11136762-11136781 | MS.gene89856:intron | 15.0% |
!! | AACAGAAGAAAATCAAATAT+AGG | - | chr5.3:11136082-11136101 | None:intergenic | 20.0% |
!! | ACTTGTATAACAAAATAAAG+TGG | - | chr5.3:11136509-11136528 | None:intergenic | 20.0% |
!! | ATAATCTACATAATGTAGTT+AGG | + | chr5.3:11135232-11135251 | MS.gene89856:intron | 20.0% |
!! | ATATATAAATAGGGATGAAA+AGG | - | chr5.3:11135475-11135494 | None:intergenic | 20.0% |
!! | GCTAAATTAAATGTATAATC+TGG | + | chr5.3:11136804-11136823 | MS.gene89856:intron | 20.0% |
!! | TAAAACAGAATATGAAAACA+AGG | - | chr5.3:11137044-11137063 | None:intergenic | 20.0% |
!! | TTAAATATTGTGTATTCTCA+CGG | + | chr5.3:11136015-11136034 | MS.gene89856:intron | 20.0% |
!! | TTGCATAAAATGAGTAAAAT+TGG | + | chr5.3:11135774-11135793 | MS.gene89856:intron | 20.0% |
!!! | ATTTTATGCAATGTTATTAG+AGG | - | chr5.3:11135765-11135784 | None:intergenic | 20.0% |
!!! | CAAGAATCAATTTTAAAGTT+AGG | - | chr5.3:11136712-11136731 | None:intergenic | 20.0% |
!!! | TAGAAGTTTTTACTTGATAT+AGG | + | chr5.3:11135194-11135213 | MS.gene89856:intron | 20.0% |
!!! | TATTAGTGATTTTTCATGAA+AGG | + | chr5.3:11136294-11136313 | MS.gene89856:intron | 20.0% |
! | AAAGAAAAAGAACAATCACA+TGG | - | chr5.3:11136183-11136202 | None:intergenic | 25.0% |
! | AAAGCCTTCATTAAATATAC+TGG | - | chr5.3:11136227-11136246 | None:intergenic | 25.0% |
! | AAATGAGTAAAATTGGACAA+AGG | + | chr5.3:11135781-11135800 | MS.gene89856:intron | 25.0% |
! | AACTGTGGATATTTAATGAT+TGG | + | chr5.3:11135390-11135409 | MS.gene89856:intron | 25.0% |
! | AAGCCTTCATTAAATATACT+GGG | - | chr5.3:11136226-11136245 | None:intergenic | 25.0% |
! | AATATAAACACTGTCATCTA+TGG | + | chr5.3:11137178-11137197 | MS.gene89856:CDS | 25.0% |
! | ACATTAGATTCAAACATCTT+TGG | - | chr5.3:11137373-11137392 | None:intergenic | 25.0% |
! | AGATGACAGTGTTTATATTA+AGG | - | chr5.3:11137177-11137196 | None:intergenic | 25.0% |
! | CAAACCAAAACATATATCTT+CGG | - | chr5.3:11135161-11135180 | None:intergenic | 25.0% |
! | TAAGACTCGATGAAAAATAA+AGG | - | chr5.3:11135430-11135449 | None:intergenic | 25.0% |
! | TCATTCAACAATAAACTATC+TGG | - | chr5.3:11135987-11136006 | None:intergenic | 25.0% |
! | TCTTGAATCAATTAACAATG+AGG | - | chr5.3:11135518-11135537 | None:intergenic | 25.0% |
! | TGTATAACAAAATAAAGTGG+CGG | - | chr5.3:11136506-11136525 | None:intergenic | 25.0% |
! | TTACAAGTAATATCCATCAT+CGG | - | chr5.3:11136648-11136667 | None:intergenic | 25.0% |
! | TTCATTGTGTTAAATTTGTG+TGG | + | chr5.3:11134932-11134951 | MS.gene89856:intron | 25.0% |
!! | GATTGTTCTTTTTCTTTCTT+GGG | + | chr5.3:11136186-11136205 | MS.gene89856:intron | 25.0% |
!! | TGATTGTTCTTTTTCTTTCT+TGG | + | chr5.3:11136185-11136204 | MS.gene89856:intron | 25.0% |
!!! | CTCTGTTTTTTAACATATCA+GGG | + | chr5.3:11137226-11137245 | MS.gene89856:intron | 25.0% |
!!! | TATTTGATTTTCTTCTGTTC+TGG | + | chr5.3:11136083-11136102 | MS.gene89856:intron | 25.0% |
AAAATAAAGGAGGAAGAGAA+TGG | - | chr5.3:11135417-11135436 | None:intergenic | 30.0% | |
AAATAAAGGAGGAAGAGAAT+GGG | - | chr5.3:11135416-11135435 | None:intergenic | 30.0% | |
ACAGTGTTTATATTAAGGAC+AGG | - | chr5.3:11137172-11137191 | None:intergenic | 30.0% | |
ACATGATATAAAGACAGCAT+AGG | - | chr5.3:11136754-11136773 | None:intergenic | 30.0% | |
AGATGTTTGAATCTAATGTG+AGG | + | chr5.3:11137374-11137393 | MS.gene89856:CDS | 30.0% | |
CATGATATAAAGACAGCATA+GGG | - | chr5.3:11136753-11136772 | None:intergenic | 30.0% | |
GGTTATCACTTAACAAGTAT+AGG | - | chr5.3:11136145-11136164 | None:intergenic | 30.0% | |
GTATCATTATGTGTATATGC+AGG | + | chr5.3:11137081-11137100 | MS.gene89856:intron | 30.0% | |
TAAAATCCACCATAAGAGTA+TGG | - | chr5.3:11135717-11135736 | None:intergenic | 30.0% | |
TAACTACAATTCATGCTTCT+GGG | + | chr5.3:11137012-11137031 | MS.gene89856:intron | 30.0% | |
TACAAGTAATATCCATCATC+GGG | - | chr5.3:11136647-11136666 | None:intergenic | 30.0% | |
TACATGTTTAAGCTGACTAA+TGG | - | chr5.3:11136356-11136375 | None:intergenic | 30.0% | |
TCTCCCAGTATATTTAATGA+AGG | + | chr5.3:11136220-11136239 | MS.gene89856:intron | 30.0% | |
TGTAACAAAAAACAGCATAG+AGG | - | chr5.3:11136888-11136907 | None:intergenic | 30.0% | |
TTAACTACAATTCATGCTTC+TGG | + | chr5.3:11137011-11137030 | MS.gene89856:intron | 30.0% | |
TTTCCGTGAAAATTTACTGT+AGG | + | chr5.3:11135935-11135954 | MS.gene89856:intron | 30.0% | |
TTTCCTTCCAAGTCAATATT+TGG | - | chr5.3:11137115-11137134 | None:intergenic | 30.0% | |
! | ACTACCGAAGATATATGTTT+TGG | + | chr5.3:11135154-11135173 | MS.gene89856:intron | 30.0% |
! | ACTTGTTAAGTGATAACCTT+GGG | + | chr5.3:11136147-11136166 | MS.gene89856:intron | 30.0% |
! | AGGCTTTTTATCTTGAGAAT+TGG | + | chr5.3:11136240-11136259 | MS.gene89856:intron | 30.0% |
! | ATGAAAGGAAACTTCTTTTG+TGG | + | chr5.3:11136309-11136328 | MS.gene89856:intron | 30.0% |
! | TACTTGTTAAGTGATAACCT+TGG | + | chr5.3:11136146-11136165 | MS.gene89856:intron | 30.0% |
!! | GATGATGGATATTACTTGTA+AGG | + | chr5.3:11136647-11136666 | MS.gene89856:intron | 30.0% |
!! | TCAGGGTTTTGATATTTGAA+CGG | + | chr5.3:11137243-11137262 | MS.gene89856:intron | 30.0% |
!!! | ATACTCTTATGGTGGATTTT+AGG | + | chr5.3:11135716-11135735 | MS.gene89856:intron | 30.0% |
!!! | CAATTTTAAAGTTAGGCTAC+AGG | - | chr5.3:11136705-11136724 | None:intergenic | 30.0% |
!!! | CTGTTTTTTCGTCATTTTGA+GGG | - | chr5.3:11136849-11136868 | None:intergenic | 30.0% |
!!! | GCTCTGTTTTTTAACATATC+AGG | + | chr5.3:11137225-11137244 | MS.gene89856:intron | 30.0% |
!!! | TATGCTGTTTTTTGTTACAG+AGG | + | chr5.3:11136889-11136908 | MS.gene89856:intron | 30.0% |
!!! | TCTGTTTTTTCGTCATTTTG+AGG | - | chr5.3:11136850-11136869 | None:intergenic | 30.0% |
AACAAAAAACAGCATAGAGG+TGG | - | chr5.3:11136885-11136904 | None:intergenic | 35.0% | |
AATGGAAAACCTTGAGATTG+TGG | + | chr5.3:11135869-11135888 | MS.gene89856:intron | 35.0% | |
ACAAGGTAGAGATAAGTGAA+TGG | + | chr5.3:11135851-11135870 | MS.gene89856:intron | 35.0% | |
ACGGGGATACTTGAAATTTA+TGG | + | chr5.3:11137262-11137281 | MS.gene89856:intron | 35.0% | |
ATCTAGGAGTTGAATTAGCA+AGG | + | chr5.3:11135903-11135922 | MS.gene89856:intron | 35.0% | |
CTTCCAAGTCAATATTTGGA+TGG | - | chr5.3:11137111-11137130 | None:intergenic | 35.0% | |
CTTGTTAAGTGATAACCTTG+GGG | + | chr5.3:11136148-11136167 | MS.gene89856:intron | 35.0% | |
GACTCGATGAAAAATAAAGG+AGG | - | chr5.3:11135427-11135446 | None:intergenic | 35.0% | |
GCAATGTTATTAGAGGATGA+TGG | - | chr5.3:11135758-11135777 | None:intergenic | 35.0% | |
GTTTGAATCTAATGTGAGGA+GGG | + | chr5.3:11137378-11137397 | MS.gene89856:CDS | 35.0% | |
TCAAAACTTCGAAGTTCATC+AGG | - | chr5.3:11136619-11136638 | None:intergenic | 35.0% | |
TCAACATCTTAAGAGAAGAC+TGG | + | chr5.3:11137143-11137162 | MS.gene89856:CDS | 35.0% | |
TGTGGTAGTAAGAATGATCT+AGG | + | chr5.3:11135887-11135906 | MS.gene89856:intron | 35.0% | |
TGTTTGAATCTAATGTGAGG+AGG | + | chr5.3:11137377-11137396 | MS.gene89856:CDS | 35.0% | |
TTCTTACTACCACAATCTCA+AGG | - | chr5.3:11135881-11135900 | None:intergenic | 35.0% | |
TTGTTAAGTGATAACCTTGG+GGG | + | chr5.3:11136149-11136168 | MS.gene89856:intron | 35.0% | |
! | ATCTGTTACTTATTGTGTGC+AGG | + | chr5.3:11137291-11137310 | MS.gene89856:intron | 35.0% |
! | ATGTTATTAGAGGATGATGG+TGG | - | chr5.3:11135755-11135774 | None:intergenic | 35.0% |
! | CTACCATCCAAATATTGACT+TGG | + | chr5.3:11137105-11137124 | MS.gene89856:CDS | 35.0% |
! | GAGCCTACAGTAAATTTTCA+CGG | - | chr5.3:11135941-11135960 | None:intergenic | 35.0% |
! | GCTGCTAACAATGATACTTT+TGG | + | chr5.3:11135538-11135557 | MS.gene89856:intron | 35.0% |
! | TGTTCTTTTTCTTTCTTGGG+CGG | + | chr5.3:11136189-11136208 | MS.gene89856:intron | 35.0% |
! | TTGATTTTCTTCTGTTCTGG+TGG | + | chr5.3:11136086-11136105 | MS.gene89856:intron | 35.0% |
!! | AGGGTTTTGATATTTGAACG+GGG | + | chr5.3:11137245-11137264 | MS.gene89856:intron | 35.0% |
!! | ATAAGAGCATTCACACTTCA+CGG | - | chr5.3:11136112-11136131 | None:intergenic | 35.0% |
!! | CAGGGTTTTGATATTTGAAC+GGG | + | chr5.3:11137244-11137263 | MS.gene89856:intron | 35.0% |
!! | CATCCAAATATTGACTTGGA+AGG | + | chr5.3:11137109-11137128 | MS.gene89856:CDS | 35.0% |
!!! | TGCCATAGCAGGAATTTTTT+GGG | + | chr5.3:11135034-11135053 | MS.gene89856:intron | 35.0% |
!!! | TTGCCATAGCAGGAATTTTT+TGG | + | chr5.3:11135033-11135052 | MS.gene89856:intron | 35.0% |
AATTGCATGGTGCAAGACTT+TGG | - | chr5.3:11136578-11136597 | None:intergenic | 40.0% | |
ACAATCATCTCCTGCAATTG+TGG | + | chr5.3:11135335-11135354 | MS.gene89856:intron | 40.0% | |
ACAATTGCAGGAGATGATTG+TGG | - | chr5.3:11135336-11135355 | None:intergenic | 40.0% | |
AGTGTGAATGCTCTTATGCT+TGG | + | chr5.3:11136115-11136134 | MS.gene89856:intron | 40.0% | |
ATACTTGAATCGAGAGGGAA+AGG | + | chr5.3:11134979-11134998 | MS.gene89856:intron | 40.0% | |
ATAGATGGGAGACACATTGA+AGG | - | chr5.3:11136932-11136951 | None:intergenic | 40.0% | |
ATCAGGTCATCTTTGCCATT+GGG | - | chr5.3:11136602-11136621 | None:intergenic | 40.0% | |
ATCCACAGTTTACTGAAGAC+TGG | - | chr5.3:11135380-11135399 | None:intergenic | 40.0% | |
ATGAGACGCAGAAAGAAACA+AGG | + | chr5.3:11135834-11135853 | MS.gene89856:intron | 40.0% | |
ATTATCTCTCAAGACAGCAG+CGG | - | chr5.3:11137350-11137369 | None:intergenic | 40.0% | |
CAAGCTGAAAATGCCAGTAA+TGG | + | chr5.3:11134826-11134845 | MS.gene89856:CDS | 40.0% | |
CAATTGCAGGAGATGATTGT+GGG | - | chr5.3:11135335-11135354 | None:intergenic | 40.0% | |
CCAGAATACTTGAATCGAGA+GGG | + | chr5.3:11134974-11134993 | MS.gene89856:intron | 40.0% | |
CTTAACAGGTACTCCATTAC+TGG | - | chr5.3:11134842-11134861 | None:intergenic | 40.0% | |
GAGGGAAAGGTGAACAATAA+AGG | + | chr5.3:11134992-11135011 | MS.gene89856:intron | 40.0% | |
GATTCAAGTATTCTGGCCAT+GGG | - | chr5.3:11134970-11134989 | None:intergenic | 40.0% | |
TAATGTGTAGTTGCCATAGC+AGG | + | chr5.3:11135023-11135042 | MS.gene89856:intron | 40.0% | |
TGAAGAGTTACAAGCTCACT+AGG | + | chr5.3:11136389-11136408 | MS.gene89856:intron | 40.0% | |
TGCAGCTTATAGTAGAAGCA+TGG | - | chr5.3:11135684-11135703 | None:intergenic | 40.0% | |
TGTATCATCTCTTCACGGTA+TGG | + | chr5.3:11137203-11137222 | MS.gene89856:intron | 40.0% | |
TGTCATCTGCCATACTCTTA+TGG | + | chr5.3:11135705-11135724 | MS.gene89856:intron | 40.0% | |
TTTCTGGATTTCATTCTCGC+TGG | - | chr5.3:11135101-11135120 | None:intergenic | 40.0% | |
TTTGCCATTGGGAAATTGCA+TGG | - | chr5.3:11136591-11136610 | None:intergenic | 40.0% | |
TTTGTCTTGCACTTCACCTT+GGG | - | chr5.3:11136967-11136986 | None:intergenic | 40.0% | |
! | AGCTTATAGTAGAAGCATGG+AGG | - | chr5.3:11135681-11135700 | None:intergenic | 40.0% |
! | TGGCTTGTATCATCTCTTCA+CGG | + | chr5.3:11137198-11137217 | MS.gene89856:CDS | 40.0% |
!! | AGAAGCATGGAGGTTTTCAT+AGG | - | chr5.3:11135671-11135690 | None:intergenic | 40.0% |
!!! | CCATAGCAGGAATTTTTTGG+GGG | + | chr5.3:11135036-11135055 | MS.gene89856:intron | 40.0% |
!!! | GCCATAGCAGGAATTTTTTG+GGG | + | chr5.3:11135035-11135054 | MS.gene89856:intron | 40.0% |
!!! | GCTGTTTTTTGTTACAGAGG+AGG | + | chr5.3:11136892-11136911 | MS.gene89856:intron | 40.0% |
AAGACAGCATAGGGACATCA+AGG | - | chr5.3:11136744-11136763 | None:intergenic | 45.0% | |
AAGTATTCTGGCCATGGGTA+GGG | - | chr5.3:11134965-11134984 | None:intergenic | 45.0% | |
AGAGAAGAGACCACAATTGC+AGG | - | chr5.3:11135348-11135367 | None:intergenic | 45.0% | |
CAAGGTGAAGTGCAAGACAA+AGG | + | chr5.3:11136966-11136985 | MS.gene89856:CDS | 45.0% | |
CATCAGGTCATCTTTGCCAT+TGG | - | chr5.3:11136603-11136622 | None:intergenic | 45.0% | |
CATCTGCCATACTCTTATGG+TGG | + | chr5.3:11135708-11135727 | MS.gene89856:intron | 45.0% | |
CCAGCACTTTGCTTCTTAAC+AGG | - | chr5.3:11134856-11134875 | None:intergenic | 45.0% | |
CCCCCAAAAAATTCCTGCTA+TGG | - | chr5.3:11135039-11135058 | None:intergenic | 45.0% | |
CCCTCTCGATTCAAGTATTC+TGG | - | chr5.3:11134977-11134996 | None:intergenic | 45.0% | |
CCTGTTAAGAAGCAAAGTGC+TGG | + | chr5.3:11134853-11134872 | MS.gene89856:CDS | 45.0% | |
CGATTCAAGTATTCTGGCCA+TGG | - | chr5.3:11134971-11134990 | None:intergenic | 45.0% | |
CTTTGTCTTGCACTTCACCT+TGG | - | chr5.3:11136968-11136987 | None:intergenic | 45.0% | |
GACCAGTCTTCAGTAAACTG+TGG | + | chr5.3:11135375-11135394 | MS.gene89856:intron | 45.0% | |
GCCAGAATACTTGAATCGAG+AGG | + | chr5.3:11134973-11134992 | MS.gene89856:intron | 45.0% | |
GGTGCTTCATGTGGATAGAT+GGG | - | chr5.3:11136946-11136965 | None:intergenic | 45.0% | |
GTGAAGTGCAAGACAAAGGT+AGG | + | chr5.3:11136970-11136989 | MS.gene89856:intron | 45.0% | |
GTGAGCTTGTAACTCTTCAC+AGG | - | chr5.3:11136388-11136407 | None:intergenic | 45.0% | |
TGCACCATGCAATTTCCCAA+TGG | + | chr5.3:11136584-11136603 | MS.gene89856:CDS | 45.0% | |
TTCAGGGGATCCTCGTAATT+TGG | - | chr5.3:11137319-11137338 | None:intergenic | 45.0% | |
!! | TAGAGGATGATGGTGGTACA+TGG | - | chr5.3:11135748-11135767 | None:intergenic | 45.0% |
!! | TCATTTTGAGGGTGACGTGT+AGG | - | chr5.3:11136838-11136857 | None:intergenic | 45.0% |
!! | TTTTGGGGGCTTCGTTGTTT+GGG | + | chr5.3:11135050-11135069 | MS.gene89856:intron | 45.0% |
!! | TTTTTGGGGGCTTCGTTGTT+TGG | + | chr5.3:11135049-11135068 | MS.gene89856:intron | 45.0% |
!!! | GTTTTGATTCGACCCGATGA+TGG | + | chr5.3:11136632-11136651 | MS.gene89856:CDS | 45.0% |
AATGTGAGGAGGGCAATGTC+TGG | + | chr5.3:11137388-11137407 | MS.gene89856:CDS | 50.0% | |
AGCAGCGGCATCATGATTCA+GGG | - | chr5.3:11137335-11137354 | None:intergenic | 50.0% | |
AGTATTCTGGCCATGGGTAG+GGG | - | chr5.3:11134964-11134983 | None:intergenic | 50.0% | |
CAAGTATTCTGGCCATGGGT+AGG | - | chr5.3:11134966-11134985 | None:intergenic | 50.0% | |
GGGTGCTTCATGTGGATAGA+TGG | - | chr5.3:11136947-11136966 | None:intergenic | 50.0% | |
TGTGCAGGAGCCAAATTACG+AGG | + | chr5.3:11137306-11137325 | MS.gene89856:intron | 50.0% | |
TTACATACAGCGGGGGAAGA+AGG | - | chr5.3:11137431-11137450 | None:intergenic | 50.0% | |
TTCACCTTGGGTGCTTCATG+TGG | - | chr5.3:11136955-11136974 | None:intergenic | 50.0% | |
! | ACATGGTTTTCTCACCCCCA+AGG | - | chr5.3:11136166-11136185 | None:intergenic | 50.0% |
! | CTATCCACATGAAGCACCCA+AGG | + | chr5.3:11136948-11136967 | MS.gene89856:CDS | 50.0% |
! | GCAATGTCTGGTGGGTATGT+GGG | + | chr5.3:11137400-11137419 | MS.gene89856:CDS | 50.0% |
CAGCAGCGGCATCATGATTC+AGG | - | chr5.3:11137336-11137355 | None:intergenic | 55.0% | |
CTGTAGGCTCTCCTGCTTTG+AGG | + | chr5.3:11135951-11135970 | MS.gene89856:intron | 55.0% | |
GCAGCGGCATCATGATTCAG+GGG | - | chr5.3:11137334-11137353 | None:intergenic | 55.0% | |
GGCGAGTTGCGTCTTCACAA+AGG | + | chr5.3:11134874-11134893 | MS.gene89856:CDS | 55.0% | |
TCCTCTCCAGTCACACTCCA+AGG | - | chr5.3:11135076-11135095 | None:intergenic | 55.0% | |
TGAGGAGGGCAATGTCTGGT+GGG | + | chr5.3:11137392-11137411 | MS.gene89856:CDS | 55.0% | |
TTTGGGCCTTGGAGTGTGAC+TGG | + | chr5.3:11135067-11135086 | MS.gene89856:intron | 55.0% | |
! | GGCAATGTCTGGTGGGTATG+TGG | + | chr5.3:11137399-11137418 | MS.gene89856:CDS | 55.0% |
!! | CTCCTGCTTTGAGGAGGACA+GGG | + | chr5.3:11135960-11135979 | MS.gene89856:intron | 55.0% |
!! | TAGGCTCTCCTGCTTTGAGG+AGG | + | chr5.3:11135954-11135973 | MS.gene89856:intron | 55.0% |
!! | TCTCCTGCTTTGAGGAGGAC+AGG | + | chr5.3:11135959-11135978 | MS.gene89856:intron | 55.0% |
GCCTTGGAGTGTGACTGGAG+AGG | + | chr5.3:11135072-11135091 | MS.gene89856:intron | 60.0% | |
GGGCTTCGTTGTTTGGGCCT+TGG | + | chr5.3:11135056-11135075 | MS.gene89856:intron | 60.0% | |
GTCCCTGTCCTCCTCAAAGC+AGG | - | chr5.3:11135965-11135984 | None:intergenic | 60.0% | |
GTGAGGAGGGCAATGTCTGG+TGG | + | chr5.3:11137391-11137410 | MS.gene89856:CDS | 60.0% | |
GTGGCACTTGCCCCTACCCA+TGG | + | chr5.3:11134951-11134970 | MS.gene89856:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 11134787 | 11137450 | 11134787 | ID=MS.gene89856 |
chr5.3 | mRNA | 11134787 | 11137450 | 11134787 | ID=MS.gene89856.t1;Parent=MS.gene89856 |
chr5.3 | exon | 11134787 | 11134895 | 11134787 | ID=MS.gene89856.t1.exon1;Parent=MS.gene89856.t1 |
chr5.3 | CDS | 11134787 | 11134895 | 11134787 | ID=cds.MS.gene89856.t1;Parent=MS.gene89856.t1 |
chr5.3 | exon | 11136555 | 11136663 | 11136555 | ID=MS.gene89856.t1.exon2;Parent=MS.gene89856.t1 |
chr5.3 | CDS | 11136555 | 11136663 | 11136555 | ID=cds.MS.gene89856.t1;Parent=MS.gene89856.t1 |
chr5.3 | exon | 11136909 | 11136987 | 11136909 | ID=MS.gene89856.t1.exon3;Parent=MS.gene89856.t1 |
chr5.3 | CDS | 11136909 | 11136987 | 11136909 | ID=cds.MS.gene89856.t1;Parent=MS.gene89856.t1 |
chr5.3 | exon | 11137103 | 11137219 | 11137103 | ID=MS.gene89856.t1.exon4;Parent=MS.gene89856.t1 |
chr5.3 | CDS | 11137103 | 11137219 | 11137103 | ID=cds.MS.gene89856.t1;Parent=MS.gene89856.t1 |
chr5.3 | exon | 11137313 | 11137450 | 11137313 | ID=MS.gene89856.t1.exon5;Parent=MS.gene89856.t1 |
chr5.3 | CDS | 11137313 | 11137450 | 11137313 | ID=cds.MS.gene89856.t1;Parent=MS.gene89856.t1 |
Gene Sequence |
Protein sequence |