AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene90111

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90111.t1 MTR_1g116660 97.266 512 8 2 1 510 1 508 0.0 994
MS.gene90111.t1 MTR_7g005910 78.175 504 100 2 1 504 1 494 0.0 783
MS.gene90111.t1 MTR_3g084110 70.140 499 140 2 6 504 1 490 0.0 721
MS.gene90111.t1 MTR_1g116650 73.214 504 112 4 1 504 47 527 0.0 718
MS.gene90111.t1 MTR_5g077580 46.972 545 192 5 28 487 21 553 4.47e-165 479
MS.gene90111.t1 MTR_2g049020 56.284 366 149 2 21 375 6 371 1.53e-137 409
MS.gene90111.t1 MTR_2g049020 51.429 140 68 0 365 504 434 573 1.07e-37 146
MS.gene90111.t1 MTR_2g026160 45.826 539 198 7 29 481 23 553 8.52e-136 405
MS.gene90111.t1 MTR_2g048720 54.821 363 156 1 21 375 6 368 2.38e-126 380
MS.gene90111.t1 MTR_2g048720 59.813 107 43 0 381 487 447 553 4.03e-29 121
MS.gene90111.t1 MTR_2g026140 41.558 539 206 9 29 481 23 538 1.92e-109 337
MS.gene90111.t1 MTR_6g018790 36.175 481 288 7 2 481 77 539 1.96e-84 271
MS.gene90111.t1 MTR_2g013310 35.524 487 290 6 30 510 50 518 2.16e-84 270
MS.gene90111.t1 MTR_7g082270 36.403 467 276 7 18 481 51 499 9.59e-84 268
MS.gene90111.t1 MTR_4g072030 32.848 481 296 8 18 481 14 484 5.16e-78 254
MS.gene90111.t1 MTR_2g013310 35.205 463 276 6 54 510 1 445 5.71e-78 251
MS.gene90111.t1 MTR_7g446340 32.079 505 310 7 18 510 37 520 2.35e-77 252
MS.gene90111.t1 MTR_6g007340 32.079 505 310 7 18 510 37 520 2.35e-77 252
MS.gene90111.t1 MTR_4g069500 31.731 520 312 13 18 509 17 521 1.54e-74 244
MS.gene90111.t1 MTR_8g077890 33.605 491 295 8 30 499 16 496 2.25e-74 244
MS.gene90111.t1 MTR_3g116240 32.627 472 290 7 30 481 25 488 1.86e-72 239
MS.gene90111.t1 MTR_5g075300 33.264 484 297 6 30 494 16 492 4.43e-71 235
MS.gene90111.t1 MTR_7g082270 36.715 414 241 7 18 428 51 446 1.51e-70 233
MS.gene90111.t1 MTR_4g077740 33.478 460 268 9 43 481 55 497 1.51e-69 231
MS.gene90111.t1 MTR_4g069500 31.405 484 291 12 54 509 1 471 2.80e-66 221
MS.gene90111.t1 MTR_6g088450 31.116 466 296 7 22 474 47 500 5.12e-65 219
MS.gene90111.t1 MTR_1g022315 33.551 459 281 11 33 485 49 489 1.01e-64 218
MS.gene90111.t1 MTR_5g077590 37.901 343 140 6 188 475 63 387 4.40e-64 214
MS.gene90111.t1 MTR_8g077310 32.962 449 278 9 39 482 53 483 6.90e-64 216
MS.gene90111.t1 MTR_8g103500 31.447 477 305 6 22 486 7 473 1.16e-63 215
MS.gene90111.t1 MTR_5g020270 32.373 451 284 9 39 485 56 489 1.29e-63 215
MS.gene90111.t1 MTR_3g080240 31.957 460 292 8 31 488 95 535 4.02e-63 215
MS.gene90111.t1 MTR_1g022315 35.500 400 239 10 87 481 1 386 4.42e-63 211
MS.gene90111.t1 MTR_4g118610 34.368 451 263 12 39 481 58 483 1.71e-62 212
MS.gene90111.t1 MTR_7g094450 33.705 448 269 9 39 481 46 470 6.18e-62 210
MS.gene90111.t1 MTR_5g020270 33.417 398 249 7 87 481 1 385 1.42e-61 207
MS.gene90111.t1 MTR_8g077310 33.584 399 247 7 87 481 1 385 4.44e-61 206
MS.gene90111.t1 MTR_2g020710 35.222 406 241 9 80 481 4 391 1.52e-60 204
MS.gene90111.t1 MTR_8g077300 31.602 462 279 9 32 481 38 474 2.67e-60 206
MS.gene90111.t1 MTR_7g113960 32.816 451 271 12 36 481 32 455 2.80e-60 206
MS.gene90111.t1 MTR_2g020710 35.222 406 241 9 80 481 93 480 1.07e-59 204
MS.gene90111.t1 MTR_4g013205 31.011 445 290 6 39 482 42 470 7.65e-59 202
MS.gene90111.t1 MTR_7g113970 33.902 410 242 9 80 482 106 493 4.53e-58 201
MS.gene90111.t1 MTR_6g087910 30.172 464 298 9 21 482 45 484 1.28e-57 199
MS.gene90111.t1 MTR_5g020270 32.080 452 263 11 39 485 56 468 2.87e-57 197
MS.gene90111.t1 MTR_5g006070 29.167 480 309 11 31 487 20 491 3.79e-56 196
MS.gene90111.t1 MTR_7g094110 33.831 402 241 8 85 481 91 472 5.46e-55 192
MS.gene90111.t1 MTR_1g038600 28.145 469 308 8 31 487 21 472 4.39e-52 184
MS.gene90111.t1 MTR_4g091370 28.601 479 313 10 31 487 21 492 7.71e-52 184
MS.gene90111.t1 MTR_1g038630 27.615 478 317 8 31 487 21 490 8.29e-52 184
MS.gene90111.t1 MTR_1g104770 28.753 473 304 12 39 487 29 492 9.24e-52 184
MS.gene90111.t1 MTR_5g006070 31.122 392 257 9 101 487 60 443 2.60e-51 182
MS.gene90111.t1 MTR_1g104780 30.297 505 300 16 39 504 28 519 3.58e-51 182
MS.gene90111.t1 MTR_0009s0370 28.092 477 310 11 39 490 27 495 4.09e-51 182
MS.gene90111.t1 MTR_5g041550 26.233 507 339 11 6 489 1 495 4.42e-51 182
MS.gene90111.t1 MTR_1g104750 28.800 500 316 15 13 487 7 491 1.82e-50 180
MS.gene90111.t1 MTR_5g082540 27.731 476 319 7 31 487 21 490 2.80e-50 180
MS.gene90111.t1 MTR_4g118610 33.592 387 229 10 39 419 58 422 3.54e-50 178
MS.gene90111.t1 MTR_3g023480 26.327 490 331 9 37 503 25 507 4.71e-50 179
MS.gene90111.t1 MTR_4g090600 28.226 496 325 10 31 503 21 508 8.63e-50 179
MS.gene90111.t1 MTR_6g087040 29.592 490 314 12 32 500 25 504 1.78e-49 177
MS.gene90111.t1 MTR_6g088375 29.592 490 314 12 32 500 25 504 1.78e-49 177
MS.gene90111.t1 MTR_4g064820 35.277 343 199 6 42 364 105 444 2.14e-49 177
MS.gene90111.t1 MTR_5g019870 28.715 498 320 9 30 507 12 494 7.94e-49 176
MS.gene90111.t1 MTR_0204s0020 26.866 469 310 9 39 487 27 482 8.28e-49 175
MS.gene90111.t1 MTR_0204s0020 27.484 473 305 11 39 487 27 485 2.04e-48 174
MS.gene90111.t1 MTR_3g093010 25.963 493 329 10 36 502 25 507 9.83e-48 173
MS.gene90111.t1 MTR_5g094760 27.593 482 311 12 30 487 24 491 2.95e-47 171
MS.gene90111.t1 MTR_2g020710 34.884 344 200 9 80 419 93 416 3.37e-47 169
MS.gene90111.t1 MTR_0204s0040 27.559 508 320 13 9 487 5 493 3.79e-47 171
MS.gene90111.t1 MTR_3g008160 27.027 481 318 12 30 487 20 490 6.54e-47 171
MS.gene90111.t1 MTR_2g020710 34.925 335 197 8 80 410 93 410 8.76e-47 168
MS.gene90111.t1 MTR_8g102860 27.853 517 324 13 18 510 16 507 1.39e-46 170
MS.gene90111.t1 MTR_3g008170 26.547 501 320 13 32 501 22 505 3.54e-46 169
MS.gene90111.t1 MTR_4g116770 28.452 478 294 13 39 487 231 689 5.38e-46 171
MS.gene90111.t1 MTR_3g007910 27.371 464 295 11 39 489 28 462 5.43e-45 165
MS.gene90111.t1 MTR_7g091690 27.629 485 303 14 32 487 26 491 4.86e-44 162
MS.gene90111.t1 MTR_3g074270 26.866 469 300 11 39 489 29 472 6.33e-44 162
MS.gene90111.t1 MTR_4g116790 26.819 481 322 10 39 499 33 503 2.35e-43 161
MS.gene90111.t1 MTR_3g008160 27.896 423 290 10 70 487 29 441 2.62e-43 160
MS.gene90111.t1 MTR_3g074390 26.439 469 321 8 39 489 34 496 3.87e-43 160
MS.gene90111.t1 MTR_8g077310 32.143 364 223 9 39 397 53 397 5.46e-43 157
MS.gene90111.t1 MTR_8g102860 28.538 431 283 9 86 510 44 455 1.08e-42 158
MS.gene90111.t1 MTR_7g094110 31.095 402 232 9 85 481 91 452 3.67e-42 156
MS.gene90111.t1 MTR_3g093060 24.757 412 298 7 85 491 45 449 4.47e-42 156
MS.gene90111.t1 MTR_3g074410 25.800 469 321 10 39 487 31 492 1.44e-41 156
MS.gene90111.t1 MTR_7g113960 31.751 337 205 10 36 367 32 348 2.54e-39 147
MS.gene90111.t1 MTR_2g020710 33.562 292 181 6 80 369 93 373 8.30e-39 145
MS.gene90111.t1 MTR_4g069500 29.032 341 206 9 195 509 2 332 4.96e-38 142
MS.gene90111.t1 MTR_7g113970 33.562 292 170 7 80 364 106 380 1.15e-37 143
MS.gene90111.t1 MTR_3g116060 37.850 214 124 4 36 247 7 213 4.76e-35 139
MS.gene90111.t1 MTR_3g116060 31.776 214 130 3 274 478 505 711 1.02e-23 105
MS.gene90111.t1 MTR_3g118530 37.619 210 126 4 43 249 14 221 3.37e-33 134
MS.gene90111.t1 MTR_3g118530 32.579 221 132 4 267 478 509 721 1.62e-24 108
MS.gene90111.t1 MTR_3g118530 37.619 210 126 4 43 249 14 221 4.15e-33 133
MS.gene90111.t1 MTR_5g024740 35.071 211 131 4 36 244 7 213 1.35e-31 129
MS.gene90111.t1 MTR_5g024740 30.698 215 131 4 274 478 497 703 4.48e-18 88.2
MS.gene90111.t1 MTR_5g044910 33.610 241 156 4 36 274 7 245 1.26e-30 126
MS.gene90111.t1 MTR_5g044910 28.384 229 148 3 274 493 495 716 3.36e-16 82.0
MS.gene90111.t1 MTR_4g116790 27.190 331 206 9 39 345 33 352 2.32e-29 119
MS.gene90111.t1 MTR_3g074340 26.524 328 228 8 181 503 20 339 8.97e-26 108
MS.gene90111.t1 MTR_3g074380 25.806 341 229 7 39 361 32 366 1.32e-25 108
MS.gene90111.t1 MTR_8g073100 31.050 219 148 3 33 249 4 221 1.55e-25 111
MS.gene90111.t1 MTR_8g073100 30.093 216 131 4 274 478 493 699 1.31e-17 86.7
MS.gene90111.t1 MTR_3g074320 26.220 328 229 8 181 503 20 339 1.30e-24 105
MS.gene90111.t1 MTR_3g074370 26.220 328 229 8 181 503 20 339 1.78e-24 104
MS.gene90111.t1 MTR_6g006260 39.474 152 81 3 203 352 15 157 1.28e-23 100
MS.gene90111.t1 MTR_6g006260 48.515 101 48 1 252 352 5 101 1.65e-22 95.5
MS.gene90111.t1 MTR_6g006260 43.200 125 62 2 228 352 43 158 1.67e-22 97.4
MS.gene90111.t1 MTR_1g074940 23.077 494 299 17 39 474 27 497 3.53e-17 84.7
MS.gene90111.t1 MTR_3g465780 50.000 102 22 4 50 148 5 80 3.67e-17 79.3
MS.gene90111.t1 MTR_3g074400 23.476 443 271 13 62 478 20 420 3.73e-16 80.9
MS.gene90111.t1 MTR_1g069935 22.941 510 300 21 39 480 27 511 1.02e-15 80.1
MS.gene90111.t1 MTR_5g068140 22.814 526 334 23 39 502 26 541 3.43e-15 78.6
MS.gene90111.t1 MTR_1g069930 23.197 513 300 21 38 481 26 513 4.61e-15 78.2
MS.gene90111.t1 MTR_1g074930 23.191 470 275 19 74 480 68 514 3.30e-14 75.5
MS.gene90111.t1 MTR_1g043200 21.542 506 318 18 39 481 26 515 6.65e-13 71.2
MS.gene90111.t1 MTR_3g082700 23.144 458 263 18 81 474 76 508 8.20e-13 71.2
MS.gene90111.t1 MTR_5g096000 29.221 154 93 3 39 185 28 172 8.91e-13 69.7
MS.gene90111.t1 MTR_7g096880 23.026 456 261 18 81 474 76 503 2.23e-12 69.7
MS.gene90111.t1 MTR_1g043220 21.584 505 317 18 39 480 26 514 2.69e-12 69.3
MS.gene90111.t1 MTR_7g096870 21.957 460 275 16 81 480 76 511 3.26e-12 69.3
MS.gene90111.t1 MTR_4g005090 31.053 190 126 4 75 262 67 253 3.27e-12 68.9
MS.gene90111.t1 MTR_1g043290 21.584 505 317 17 39 480 26 514 4.29e-12 68.9
MS.gene90111.t1 MTR_7g094420 31.169 154 77 5 285 438 1 125 6.43e-12 63.5
MS.gene90111.t1 MTR_4g083960 20.800 500 319 18 39 481 26 505 8.34e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90111.t1 AT2G43330 71.968 503 137 2 4 505 2 501 0.0 708
MS.gene90111.t1 AT1G30220 57.183 355 149 1 28 379 23 377 8.79e-126 379
MS.gene90111.t1 AT1G30220 62.963 108 40 0 381 488 453 560 6.54e-38 147
MS.gene90111.t1 AT2G35740 52.738 347 158 2 31 371 24 370 3.34e-121 367
MS.gene90111.t1 AT2G35740 54.455 101 46 0 381 481 456 556 1.65e-27 116
MS.gene90111.t1 AT4G16480 52.958 355 161 2 28 376 22 376 2.29e-116 355
MS.gene90111.t1 AT4G16480 57.426 101 43 0 381 481 457 557 1.34e-28 120
MS.gene90111.t1 AT4G16480 52.958 355 161 2 28 376 22 376 2.29e-116 355
MS.gene90111.t1 AT4G16480 57.426 101 43 0 381 481 457 557 1.34e-28 120
MS.gene90111.t1 AT4G16480 52.958 355 161 2 28 376 22 376 2.29e-116 355
MS.gene90111.t1 AT4G16480 57.426 101 43 0 381 481 457 557 1.34e-28 120
MS.gene90111.t1 AT5G16150 39.111 450 260 5 33 482 105 540 8.32e-85 272
MS.gene90111.t1 AT5G16150 39.111 450 260 5 33 482 105 540 8.32e-85 272
MS.gene90111.t1 AT5G16150 39.111 450 260 5 33 482 105 540 8.32e-85 272
MS.gene90111.t1 AT2G20780 34.034 476 293 6 30 496 52 515 8.39e-76 248
MS.gene90111.t1 AT4G36670 32.636 478 291 8 30 486 14 481 1.64e-74 244
MS.gene90111.t1 AT2G18480 35.669 471 275 10 30 481 19 480 3.80e-73 241
MS.gene90111.t1 AT3G18830 32.225 481 297 9 29 489 32 503 1.48e-71 237
MS.gene90111.t1 AT5G17010 32.863 496 289 9 13 481 21 499 1.26e-70 234
MS.gene90111.t1 AT5G17010 32.863 496 289 9 13 481 21 499 1.26e-70 234
MS.gene90111.t1 AT5G17010 32.863 496 289 9 13 481 21 499 1.26e-70 234
MS.gene90111.t1 AT2G16120 31.663 499 300 8 29 502 22 504 1.99e-70 234
MS.gene90111.t1 AT2G16130 31.325 498 301 8 29 501 22 503 6.60e-69 229
MS.gene90111.t1 AT5G59250 33.913 460 271 6 42 481 107 553 1.61e-68 230
MS.gene90111.t1 AT2G20780 33.408 446 279 5 58 496 23 457 7.94e-67 223
MS.gene90111.t1 AT1G05030 32.449 490 307 8 4 487 49 520 1.35e-66 224
MS.gene90111.t1 AT3G03090 32.675 456 279 6 42 481 56 499 2.57e-66 223
MS.gene90111.t1 AT1G75220 33.478 460 279 11 33 485 48 487 3.34e-64 216
MS.gene90111.t1 AT2G48020 33.405 464 272 12 30 483 24 460 9.24e-63 212
MS.gene90111.t1 AT2G48020 33.405 464 272 12 30 483 24 460 9.24e-63 212
MS.gene90111.t1 AT1G19450 33.260 457 284 9 33 485 49 488 1.03e-61 210
MS.gene90111.t1 AT1G05030 33.971 418 262 5 71 487 64 468 1.47e-61 209
MS.gene90111.t1 AT5G27360 32.812 448 273 9 39 481 41 465 9.55e-61 207
MS.gene90111.t1 AT5G27360 32.812 448 273 9 39 481 89 513 2.81e-60 207
MS.gene90111.t1 AT5G27350 31.983 469 281 10 39 502 37 472 1.75e-57 198
MS.gene90111.t1 AT1G50310 28.542 480 313 10 32 489 24 495 5.04e-57 198
MS.gene90111.t1 AT1G79820 30.684 453 293 7 31 482 56 488 9.72e-56 194
MS.gene90111.t1 AT1G79820 30.684 453 293 7 31 482 56 488 9.72e-56 194
MS.gene90111.t1 AT5G18840 33.002 403 254 7 80 481 88 475 4.29e-55 192
MS.gene90111.t1 AT5G26340 29.779 497 312 14 31 501 21 506 5.30e-55 193
MS.gene90111.t1 AT3G05150 35.294 408 228 10 85 481 84 466 5.75e-55 191
MS.gene90111.t1 AT3G05150 35.294 408 228 10 85 481 84 466 5.75e-55 191
MS.gene90111.t1 AT3G05150 35.294 408 228 10 85 481 84 466 9.13e-55 191
MS.gene90111.t1 AT5G27360 33.333 378 229 7 108 481 3 361 1.07e-54 188
MS.gene90111.t1 AT5G27360 33.333 378 229 7 108 481 3 361 1.07e-54 188
MS.gene90111.t1 AT3G19940 28.302 477 313 9 32 487 24 492 1.46e-54 191
MS.gene90111.t1 AT1G07340 29.607 483 288 11 37 487 27 489 1.68e-54 191
MS.gene90111.t1 AT5G26250 29.079 478 302 12 32 485 21 485 2.01e-54 191
MS.gene90111.t1 AT1G54730 32.353 408 249 10 80 481 76 462 9.29e-54 188
MS.gene90111.t1 AT3G05155 29.841 439 280 10 47 481 41 455 4.72e-53 186
MS.gene90111.t1 AT1G11260 27.309 498 330 11 30 504 20 508 8.96e-53 187
MS.gene90111.t1 AT3G05165 31.336 434 258 11 65 481 50 460 2.86e-52 184
MS.gene90111.t1 AT3G05165 31.336 434 258 11 65 481 50 460 2.86e-52 184
MS.gene90111.t1 AT3G05165 31.336 434 258 11 65 481 50 460 2.86e-52 184
MS.gene90111.t1 AT3G05400 30.147 408 260 9 80 482 70 457 5.93e-52 183
MS.gene90111.t1 AT1G08930 30.752 452 277 12 39 481 64 488 1.85e-51 182
MS.gene90111.t1 AT1G08930 30.752 452 277 12 39 481 64 488 1.85e-51 182
MS.gene90111.t1 AT3G05960 28.512 477 310 11 32 487 20 486 2.93e-51 182
MS.gene90111.t1 AT4G21480 28.953 487 297 12 32 487 22 490 1.41e-50 181
MS.gene90111.t1 AT3G05160 30.324 432 269 8 63 481 39 451 1.31e-49 177
MS.gene90111.t1 AT4G04750 28.942 463 290 10 30 481 34 468 1.47e-49 177
MS.gene90111.t1 AT4G04750 28.942 463 290 10 30 481 34 468 1.47e-49 177
MS.gene90111.t1 AT5G23270 29.243 489 313 10 32 496 23 502 1.94e-49 177
MS.gene90111.t1 AT3G05160 30.923 401 254 7 85 481 21 402 2.52e-49 175
MS.gene90111.t1 AT3G05160 30.923 401 254 7 85 481 21 402 2.52e-49 175
MS.gene90111.t1 AT4G04750 28.942 463 290 10 30 481 78 512 3.39e-49 177
MS.gene90111.t1 AT1G67300 29.476 458 295 8 31 482 53 488 4.13e-49 176
MS.gene90111.t1 AT1G67300 29.258 458 295 8 31 482 53 487 5.23e-49 176
MS.gene90111.t1 AT1G67300 29.258 458 295 8 31 482 53 487 5.23e-49 176
MS.gene90111.t1 AT1G54730 30.882 408 234 12 80 481 76 441 7.68e-49 174
MS.gene90111.t1 AT1G77210 28.889 495 309 16 18 487 16 492 1.79e-48 175
MS.gene90111.t1 AT1G77210 28.889 495 309 16 18 487 16 492 1.79e-48 175
MS.gene90111.t1 AT1G54730 32.055 365 222 9 80 438 76 420 1.82e-47 171
MS.gene90111.t1 AT4G04760 29.512 410 271 7 80 486 16 410 2.00e-47 170
MS.gene90111.t1 AT4G04760 29.512 410 271 7 80 486 75 469 6.40e-47 170
MS.gene90111.t1 AT1G79820 30.000 400 259 7 31 429 56 435 1.18e-46 169
MS.gene90111.t1 AT3G19930 25.621 523 353 10 7 510 6 511 3.84e-46 169
MS.gene90111.t1 AT3G19930 25.621 523 353 10 7 510 6 511 3.84e-46 169
MS.gene90111.t1 AT3G05400 30.709 381 232 10 114 482 77 437 1.16e-45 166
MS.gene90111.t1 AT4G02050 27.893 484 303 13 32 487 26 491 6.06e-45 165
MS.gene90111.t1 AT4G02050 27.893 484 303 13 32 487 26 491 6.06e-45 165
MS.gene90111.t1 AT5G27360 31.806 371 226 8 39 404 41 389 1.19e-44 163
MS.gene90111.t1 AT4G04760 29.268 410 269 7 80 486 75 466 2.46e-44 163
MS.gene90111.t1 AT1G34580 28.151 476 307 10 39 489 30 495 2.76e-44 163
MS.gene90111.t1 AT1G08890 29.821 446 272 12 54 481 35 457 3.94e-44 162
MS.gene90111.t1 AT3G05165 30.750 400 238 10 70 452 55 432 1.85e-43 161
MS.gene90111.t1 AT1G67300 28.873 426 269 10 21 440 46 443 1.04e-42 158
MS.gene90111.t1 AT1G67300 28.873 426 269 10 21 440 46 443 1.04e-42 158
MS.gene90111.t1 AT1G54730 30.556 360 203 11 85 438 81 399 1.40e-42 157
MS.gene90111.t1 AT5G17010 28.486 502 243 14 13 481 18 436 1.57e-42 157
MS.gene90111.t1 AT3G05165 30.311 386 230 10 70 438 55 418 2.38e-42 157
MS.gene90111.t1 AT3G05165 30.311 386 230 10 70 438 55 418 2.38e-42 157
MS.gene90111.t1 AT3G20460 29.902 408 249 9 85 481 102 483 2.46e-42 157
MS.gene90111.t1 AT1G08920 29.561 433 267 9 65 481 52 462 2.80e-42 157
MS.gene90111.t1 AT1G34580 27.816 435 298 8 62 489 20 445 3.06e-42 157
MS.gene90111.t1 AT1G67300 28.856 402 254 9 21 416 46 421 1.52e-41 154
MS.gene90111.t1 AT1G67300 28.856 402 254 9 21 416 46 421 1.52e-41 154
MS.gene90111.t1 AT1G08900 28.412 447 279 11 53 481 32 455 2.22e-40 152
MS.gene90111.t1 AT1G08900 28.412 447 279 11 53 481 32 455 2.22e-40 152
MS.gene90111.t1 AT1G08900 28.506 435 271 10 64 481 2 413 3.49e-40 150
MS.gene90111.t1 AT1G54730 31.454 337 205 9 80 410 76 392 4.17e-40 150
MS.gene90111.t1 AT1G54730 31.454 337 205 9 80 410 76 392 4.17e-40 150
MS.gene90111.t1 AT1G08920 29.091 440 267 10 65 481 52 469 1.14e-39 150
MS.gene90111.t1 AT1G08900 29.024 410 260 9 80 481 61 447 2.04e-39 149
MS.gene90111.t1 AT1G50310 26.531 343 247 4 146 487 12 350 4.74e-39 146
MS.gene90111.t1 AT1G79820 28.035 453 257 7 31 482 56 440 3.82e-38 145
MS.gene90111.t1 AT5G61520 25.806 496 327 11 32 499 23 505 2.27e-37 144
MS.gene90111.t1 AT2G48020 31.014 345 206 10 30 364 24 346 2.58e-37 142
MS.gene90111.t1 AT2G48020 31.402 328 193 10 30 347 24 329 6.10e-36 137
MS.gene90111.t1 AT3G51490 36.406 217 133 4 36 249 7 221 9.41e-36 142
MS.gene90111.t1 AT3G51490 31.963 219 133 3 269 478 503 714 3.62e-24 107
MS.gene90111.t1 AT3G51490 36.406 217 133 4 36 249 7 221 1.09e-35 141
MS.gene90111.t1 AT3G51490 31.604 212 135 3 269 478 503 706 7.14e-22 100
MS.gene90111.t1 AT1G54730 29.819 332 186 11 85 410 81 371 1.98e-35 137
MS.gene90111.t1 AT1G08920 28.941 387 238 8 65 435 52 417 8.00e-35 136
MS.gene90111.t1 AT5G61520 27.139 409 281 8 96 499 61 457 6.06e-34 134
MS.gene90111.t1 AT1G20840 34.348 230 144 4 36 262 7 232 3.10e-33 134
MS.gene90111.t1 AT1G20840 31.776 214 130 2 274 478 507 713 5.21e-22 100
MS.gene90111.t1 AT1G20840 34.348 230 144 4 36 262 7 232 3.10e-33 134
MS.gene90111.t1 AT1G20840 31.776 214 130 2 274 478 507 713 5.21e-22 100
MS.gene90111.t1 AT1G08900 28.218 404 250 10 53 438 32 413 4.30e-33 131
MS.gene90111.t1 AT3G05155 29.508 305 191 8 47 347 41 325 4.46e-32 125
MS.gene90111.t1 AT1G77210 28.818 347 228 11 148 487 9 343 1.05e-31 125
MS.gene90111.t1 AT1G54730 31.227 269 163 8 85 347 81 333 8.54e-30 119
MS.gene90111.t1 AT4G35300 35.407 209 132 3 43 249 14 221 1.85e-29 123
MS.gene90111.t1 AT4G35300 30.698 215 131 4 274 478 514 720 1.01e-23 105
MS.gene90111.t1 AT4G35300 35.407 209 132 3 43 249 14 221 1.85e-29 123
MS.gene90111.t1 AT4G35300 30.698 215 131 4 274 478 514 720 1.01e-23 105
MS.gene90111.t1 AT4G35300 35.407 209 132 3 43 249 14 221 1.85e-29 123
MS.gene90111.t1 AT4G35300 30.698 215 131 4 274 478 514 720 1.01e-23 105
MS.gene90111.t1 AT4G35300 35.407 209 132 3 43 249 14 221 1.85e-29 123
MS.gene90111.t1 AT4G35300 30.698 215 131 4 274 478 514 720 1.01e-23 105
MS.gene90111.t1 AT4G35300 35.407 209 132 3 43 249 14 221 1.85e-29 123
MS.gene90111.t1 AT4G35300 30.698 215 131 4 274 478 514 720 1.01e-23 105
MS.gene90111.t1 AT4G35300 35.407 209 132 3 43 249 14 221 1.85e-29 123
MS.gene90111.t1 AT4G35300 30.698 215 131 4 274 478 514 720 1.01e-23 105
MS.gene90111.t1 AT4G35300 35.407 209 132 3 43 249 14 221 1.85e-29 123
MS.gene90111.t1 AT4G35300 30.698 215 131 4 274 478 514 720 1.01e-23 105
MS.gene90111.t1 AT4G35300 36.667 210 128 4 43 249 14 221 1.95e-29 123
MS.gene90111.t1 AT4G35300 30.698 215 131 4 274 478 504 710 1.00e-23 105
MS.gene90111.t1 AT4G35300 36.667 210 128 4 43 249 14 221 1.95e-29 123
MS.gene90111.t1 AT4G35300 30.698 215 131 4 274 478 504 710 1.00e-23 105
MS.gene90111.t1 AT4G35300 36.667 210 128 4 43 249 14 221 1.95e-29 123
MS.gene90111.t1 AT4G35300 30.698 215 131 4 274 478 504 710 1.00e-23 105
MS.gene90111.t1 AT1G54730 31.381 239 146 7 80 312 76 302 2.73e-27 112
MS.gene90111.t1 AT1G54730 31.381 239 146 7 80 312 76 302 2.73e-27 112
MS.gene90111.t1 AT3G51490 35.465 172 107 3 81 249 1 171 4.00e-26 112
MS.gene90111.t1 AT3G51490 31.963 219 133 3 269 478 453 664 3.97e-24 106
MS.gene90111.t1 AT4G35300 30.698 215 131 4 274 478 317 523 6.01e-24 105
MS.gene90111.t1 AT5G43340 23.767 446 275 15 81 481 77 502 6.81e-18 87.0
MS.gene90111.t1 AT2G32830 24.294 531 295 21 39 492 27 527 1.34e-15 80.1
MS.gene90111.t1 AT3G54700 23.288 511 296 20 39 480 27 510 1.53e-15 79.7
MS.gene90111.t1 AT3G54700 23.288 511 296 20 39 480 27 510 1.53e-15 79.7
MS.gene90111.t1 AT1G79820 33.766 154 95 1 329 482 232 378 1.66e-14 75.9
MS.gene90111.t1 AT1G79820 28.070 171 116 3 129 293 87 256 1.64e-12 69.7
MS.gene90111.t1 AT2G38940 22.330 515 300 21 39 480 27 514 6.89e-14 74.7
MS.gene90111.t1 AT1G76430 21.627 504 317 16 39 481 25 511 4.10e-13 72.0
MS.gene90111.t1 AT5G43350 21.739 506 313 19 39 480 27 513 6.62e-12 68.2
MS.gene90111.t1 AT3G13050 28.315 279 187 6 58 332 44 313 5.68e-11 65.1
MS.gene90111.t1 AT3G13050 28.315 279 187 6 58 332 44 313 5.68e-11 65.1
MS.gene90111.t1 AT3G13050 28.315 279 187 6 58 332 44 313 5.68e-11 65.1
MS.gene90111.t1 AT3G13050 28.315 279 187 6 58 332 44 313 5.68e-11 65.1

Find 128 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTGGATGGCTTGCAGTTT+TGG 0.155738 1.4:-88444931 MS.gene90111:CDS
CTTTCCATTGCTGAAGCTTT+AGG 0.162742 1.4:-88444753 MS.gene90111:CDS
CCCAGGTAGCTCAGGGTATT+TGG 0.168005 1.4:-88446259 MS.gene90111:CDS
GCAGATGTCATCTTCATTAT+TGG 0.174490 1.4:-88445743 MS.gene90111:CDS
CAAATTCCTCTATATTCTTT+AGG 0.213701 1.4:+88444834 None:intergenic
TTGAAGAGGTTGAACTAATA+TGG 0.216314 1.4:-88444638 MS.gene90111:CDS
AGGAGGAGTGTTTACATCTT+TGG 0.252466 1.4:-88445018 MS.gene90111:CDS
AAAAGCCATCTAGGTGATTC+AGG 0.259414 1.4:+88445428 None:intergenic
TTTCCATTGCTGAAGCTTTA+GGG 0.266602 1.4:-88444752 MS.gene90111:CDS
GGACGCCTTCTTGTTGGTTT+AGG 0.288105 1.4:-88445674 MS.gene90111:CDS
TCTGACTCGCGAAACCTTCT+TGG 0.304088 1.4:-88444576 MS.gene90111:CDS
ATCTTCATTATTGGAGCAAT+TGG 0.305046 1.4:-88445734 MS.gene90111:CDS
ATGGTGTTCCAACAGTTTAC+TGG 0.313840 1.4:-88445215 MS.gene90111:CDS
TTTAAGAATCCTTATATTCT+CGG 0.321169 1.4:-88446207 MS.gene90111:CDS
CTCGCTGCTGTCGCTGGTAT+TGG 0.357359 1.4:-88446183 MS.gene90111:CDS
ATAAAGAAGCACAAACAAAA+AGG 0.363326 1.4:+88444686 None:intergenic
GCAGCGAGACCGAGAATATA+AGG 0.369665 1.4:+88446198 None:intergenic
TCCTCCCTGAATCACCTAGA+TGG 0.374803 1.4:-88445433 MS.gene90111:CDS
AGAAATCAGACTAGCATTCA+TGG 0.377045 1.4:-88445252 MS.gene90111:CDS
GACTAATGAACCTCTGATTT+CGG 0.379135 1.4:+88445598 None:intergenic
GTTTGTGCTTCTTTATGTTC+CGG 0.382218 1.4:-88444679 MS.gene90111:CDS
ATATTAGCTCTTTGTAGCTT+AGG 0.384901 1.4:-88445038 MS.gene90111:CDS
TTACGCGTGTCCCTGGTACT+TGG 0.405259 1.4:-88445514 MS.gene90111:CDS
CACGGCACCGGTCCCATCCC+GGG 0.408219 1.4:+88444879 None:intergenic
CTCAGCAGCAGCAGCTGCAT+CGG 0.408476 1.4:-88444964 MS.gene90111:CDS
AATGCTGTCGGAACTGTTCT+TGG 0.410771 1.4:-88445092 MS.gene90111:CDS
CCACGGCACCGGTCCCATCC+CGG 0.414970 1.4:+88444878 None:intergenic
TCCAAATACCCTGAGCTACC+TGG 0.415613 1.4:+88446258 None:intergenic
CAATCTACCCCAGGTAGCTC+AGG 0.419324 1.4:-88446267 MS.gene90111:CDS
CTTCTTGTTGGTTTAGGTGT+CGG 0.422396 1.4:-88445668 MS.gene90111:CDS
CTTTATGTTCCGGAGACTAA+AGG 0.423728 1.4:-88444669 MS.gene90111:CDS
CCAACCATTGTTCAAATGGC+TGG 0.426739 1.4:-88445167 MS.gene90111:CDS
GGTACTTGGCGTTGGATGTT+GGG 0.427778 1.4:-88445500 MS.gene90111:CDS
ATAATCGGACGCCTTCTTGT+TGG 0.435228 1.4:-88445680 MS.gene90111:CDS
CATGGTTGGAGCAGGATTGA+TGG 0.435314 1.4:-88445234 MS.gene90111:CDS
GATCCTTACATTCTCATAAT+CGG 0.437163 1.4:-88445695 MS.gene90111:CDS
TGAGATGACCAATACTACTA+TGG 0.438616 1.4:-88446292 None:intergenic
CTCGGTCTCGCTGCTGTCGC+TGG 0.438703 1.4:-88446189 MS.gene90111:CDS
CAGTCCAACCATTGTTCAAA+TGG 0.439282 1.4:-88445171 MS.gene90111:CDS
CCGGGATGGGACCGGTGCCG+TGG 0.444050 1.4:-88444878 MS.gene90111:CDS
CTGACTCGCGAAACCTTCTT+GGG 0.446823 1.4:-88444575 MS.gene90111:CDS
AAGGTTAATCCTTTAGTCTC+CGG 0.454846 1.4:+88444660 None:intergenic
ATGCATGCAGGTGTGATATC+AGG 0.457665 1.4:-88445923 MS.gene90111:intron
TGTCTGAGACACAATGAGAT+TGG 0.458085 1.4:+88444779 None:intergenic
TGGTACTTGGCGTTGGATGT+TGG 0.458349 1.4:-88445501 MS.gene90111:CDS
GCAATAGCTGGTGCAATAGT+TGG 0.459155 1.4:-88445824 MS.gene90111:CDS
CGTCCGATTATGAGAATGTA+AGG 0.459282 1.4:+88445692 None:intergenic
GTCAGAGTTGTTGTTAATGT+TGG 0.461967 1.4:+88444593 None:intergenic
TATGTCAGCTACTGTGTGTT+GGG 0.465114 1.4:-88444805 MS.gene90111:CDS
TAATATGGAAAGAGAGAGCT+TGG 0.467876 1.4:-88444623 MS.gene90111:CDS
GAGTTCATTGCCCACGGCAC+CGG 0.468452 1.4:+88444867 None:intergenic
GCAATAGTTGGAGCAGCAAC+AGG 0.468489 1.4:-88445812 MS.gene90111:CDS
ATTGCTGAAGCTTTAGGGAC+TGG 0.468861 1.4:-88444747 MS.gene90111:CDS
CTCGCCTTTACGCGTGTCCC+TGG 0.469426 1.4:-88445521 MS.gene90111:CDS
CGATGCTTACGGACGAAAGA+AGG 0.471192 1.4:-88445777 MS.gene90111:CDS
GCATCGGCATCAAATACTAC+TGG 0.473885 1.4:-88444948 MS.gene90111:CDS
AACATCCAACGCCAAGTACC+AGG 0.473948 1.4:+88445503 None:intergenic
AAAGAATATAGAGGAATTTG+TGG 0.476125 1.4:-88444831 MS.gene90111:CDS
GATTTCGGAAGGTGATGCTT+CGG 0.484240 1.4:+88445613 None:intergenic
GTATGTCAGCTACTGTGTGT+TGG 0.484682 1.4:-88444806 MS.gene90111:CDS
CTAGCATTCATGGTTGGAGC+AGG 0.485561 1.4:-88445242 MS.gene90111:CDS
ATTATGAGAATGTAAGGATC+AGG 0.486112 1.4:+88445698 None:intergenic
CCAAATACCCTGAGCTACCT+GGG 0.488927 1.4:+88446259 None:intergenic
CGGGATGGGACCGGTGCCGT+GGG 0.490056 1.4:-88444877 MS.gene90111:CDS
CATTATTGGAGCAATTGGTA+TGG 0.496139 1.4:-88445729 MS.gene90111:CDS
AGAATGAATTGAACAAGTGC+AGG 0.497138 1.4:+88445464 None:intergenic
CATTTCCAACATCTATGACT+TGG 0.497219 1.4:-88445372 MS.gene90111:CDS
ATCTTTGGTTCTCTTGTCTG+TGG 0.500034 1.4:-88445003 MS.gene90111:CDS
TATTAGTTCAACCTCTTCAA+AGG 0.507383 1.4:+88444641 None:intergenic
CCAGCCATTTGAACAATGGT+TGG 0.509483 1.4:+88445167 None:intergenic
TGGATTTCAATCTAATGAGT+TGG 0.514048 1.4:-88445147 MS.gene90111:CDS
TTAGCTCTTTGTAGCTTAGG+AGG 0.517120 1.4:-88445035 MS.gene90111:CDS
ATTTACCTCATTGATCATGC+AGG 0.519303 1.4:-88445068 MS.gene90111:CDS
CGATGCAGCTGCTGCTGCTG+AGG 0.521875 1.4:+88444965 None:intergenic
GTAGGAAAGGAGTTGTCCAC+TGG 0.527919 1.4:+88445553 None:intergenic
AAAGGCGAGGTTAACTATGT+AGG 0.528535 1.4:+88445535 None:intergenic
ATAGTCAGCATGGCAATAGC+TGG 0.528818 1.4:-88445836 MS.gene90111:CDS
TGATGCTTCGGCAATGTAGA+CGG 0.530489 1.4:+88445625 None:intergenic
TAGAGAAAGTAACATTCTGC+AGG 0.532653 1.4:-88445864 MS.gene90111:CDS
TTGGAGCAGCAACAGGTGGT+TGG 0.534544 1.4:-88445805 MS.gene90111:CDS
AAAGCCATCTAGGTGATTCA+GGG 0.537542 1.4:+88445429 None:intergenic
GCTGCTGTCGCTGGTATTGG+TGG 0.540291 1.4:-88446180 MS.gene90111:CDS
AGATTGTACCATAGTAGTAT+TGG 0.543800 1.4:+88446284 None:intergenic
AATATGGAAAGAGAGAGCTT+GGG 0.544570 1.4:-88444622 MS.gene90111:CDS
GATGCTTCGGCAATGTAGAC+GGG 0.544695 1.4:+88445626 None:intergenic
GGTTGGATTAACGATGCTTA+CGG 0.545355 1.4:-88445788 MS.gene90111:CDS
ACGAGCCAAGTCATAGATGT+TGG 0.547587 1.4:+88445367 None:intergenic
ACGGCACCGGTCCCATCCCG+GGG 0.549708 1.4:+88444880 None:intergenic
AAATCCAGCCATTTGAACAA+TGG 0.550810 1.4:+88445163 None:intergenic
ACAGCAAGAATCAAGAAAGT+AGG 0.550957 1.4:+88444723 None:intergenic
ATATATCCTAAAGAATATAG+AGG 0.551417 1.4:-88444840 MS.gene90111:CDS
TAAAGGATTAACCTTTGAAG+AGG 0.555164 1.4:-88444652 MS.gene90111:CDS
GATCAATGTCCGTCCCAAGA+AGG 0.569650 1.4:+88444562 None:intergenic
ATCTCTGAGTTCATTGCCCA+CGG 0.572690 1.4:+88444861 None:intergenic
ATCAGACTAGCATTCATGGT+TGG 0.577728 1.4:-88445248 MS.gene90111:CDS
CGAGGTTAACTATGTAGGAA+AGG 0.590030 1.4:+88445540 None:intergenic
AGTACCAGGGACACGCGTAA+AGG 0.594924 1.4:+88445517 None:intergenic
GTTGTCCACTGGTGATCATG+AGG 0.595280 1.4:+88445564 None:intergenic
TTTACCTCATTGATCATGCA+GGG 0.595957 1.4:-88445067 MS.gene90111:CDS
TTCGGCAATGTAGACGGGAG+CGG 0.596993 1.4:+88445631 None:intergenic
TGTTAATGCCAGTAAACTGT+TGG 0.608971 1.4:+88445207 None:intergenic
GTGTCCCTGGTACTTGGCGT+TGG 0.611774 1.4:-88445508 MS.gene90111:CDS
AGTCCCTAAAGCTTCAGCAA+TGG 0.612759 1.4:+88444749 None:intergenic
CTCGCGAAACCTTCTTGGGA+CGG 0.612766 1.4:-88444571 MS.gene90111:CDS
GCAGGAAACAATAGTCAGCA+TGG 0.613583 1.4:-88445846 MS.gene90111:CDS
GTTGCAGCAATGAATGCTGT+CGG 0.618106 1.4:-88445104 MS.gene90111:CDS
CGGCATCAAATACTACTGGA+TGG 0.620843 1.4:-88444944 MS.gene90111:CDS
AATGAACCTCTGATTTCGGA+AGG 0.623858 1.4:+88445602 None:intergenic
AATCTACCCCAGGTAGCTCA+GGG 0.633868 1.4:-88446266 MS.gene90111:CDS
CGACACCTAAACCAACAAGA+AGG 0.637320 1.4:+88445669 None:intergenic
ATATGGAAAGAGAGAGCTTG+GGG 0.649125 1.4:-88444621 MS.gene90111:CDS
GAATATAGAGGAATTTGTGG+TGG 0.649292 1.4:-88444828 MS.gene90111:CDS
TCCTCCCTGCATGATCAATG+AGG 0.649697 1.4:+88445063 None:intergenic
TTGTCCACTGGTGATCATGA+GGG 0.650445 1.4:+88445565 None:intergenic
GTAGACGGGAGCGGTGACAG+AGG 0.660839 1.4:+88445640 None:intergenic
GAATGAATTGAACAAGTGCA+GGG 0.660884 1.4:+88445465 None:intergenic
GCATCACCTTCCGAAATCAG+AGG 0.664977 1.4:-88445608 MS.gene90111:CDS
ACTATGGTACAATCTACCCC+AGG 0.665561 1.4:-88446276 MS.gene90111:CDS
AATTCCCTCATGATCACCAG+TGG 0.677840 1.4:-88445569 MS.gene90111:CDS
CAGGGACACGCGTAAAGGCG+AGG 0.680053 1.4:+88445522 None:intergenic
ATAGTTGGAGCAGCAACAGG+TGG 0.680933 1.4:-88445809 MS.gene90111:CDS
TGGAAAGAGAGAGCTTGGGG+CGG 0.701863 1.4:-88444618 MS.gene90111:CDS
GCCATCTAGGTGATTCAGGG+AGG 0.705330 1.4:+88445432 None:intergenic
ACCTCATTGATCATGCAGGG+AGG 0.706793 1.4:-88445064 MS.gene90111:CDS
ACATCCAACGCCAAGTACCA+GGG 0.710428 1.4:+88445504 None:intergenic
CAAATACCCTGAGCTACCTG+GGG 0.713648 1.4:+88446260 None:intergenic
GAGAATGTAAGGATCAGGTG+CGG 0.719435 1.4:+88445703 None:intergenic
CGGCACCGGTCCCATCCCGG+GGG 0.744260 1.4:+88444881 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATATGAATGTCAAATT+TGG - chr1.4:88445552-88445571 MS.gene90111:CDS 15.0%
!! ATATATCCTAAAGAATATAG+AGG - chr1.4:88446005-88446024 MS.gene90111:intron 20.0%
!! ATTAAATAAAAATTGGCACT+TGG - chr1.4:88444895-88444914 MS.gene90111:CDS 20.0%
!! TTTAAGAATCCTTATATTCT+CGG - chr1.4:88444638-88444657 MS.gene90111:CDS 20.0%
!!! CATAAAAGATGATTTTGAAT+CGG - chr1.4:88444957-88444976 MS.gene90111:CDS 20.0%
! AAAGAATATAGAGGAATTTG+TGG - chr1.4:88446014-88446033 MS.gene90111:intron 25.0%
! AGTAATAGTATTTCAGTAGA+TGG + chr1.4:88444792-88444811 None:intergenic 25.0%
! AGTCTTGGAAATAAAATAGT+AGG + chr1.4:88444721-88444740 None:intergenic 25.0%
! CAAATTCCTCTATATTCTTT+AGG + chr1.4:88446014-88446033 None:intergenic 25.0%
!! ATAAAGAAGCACAAACAAAA+AGG + chr1.4:88446162-88446181 None:intergenic 25.0%
AGATTGTACCATAGTAGTAT+TGG + chr1.4:88444564-88444583 None:intergenic 30.0%
ATAGTATTTCAGTAGATGGA+TGG + chr1.4:88444788-88444807 None:intergenic 30.0%
ATCTTCATTATTGGAGCAAT+TGG - chr1.4:88445111-88445130 MS.gene90111:CDS 30.0%
ATTATGAGAATGTAAGGATC+AGG + chr1.4:88445150-88445169 None:intergenic 30.0%
GATCCTTACATTCTCATAAT+CGG - chr1.4:88445150-88445169 MS.gene90111:CDS 30.0%
GTATCATATGTTAACTAACG+TGG - chr1.4:88444832-88444851 MS.gene90111:CDS 30.0%
TATTAGTTCAACCTCTTCAA+AGG + chr1.4:88446207-88446226 None:intergenic 30.0%
TGGATTTCAATCTAATGAGT+TGG - chr1.4:88445698-88445717 MS.gene90111:CDS 30.0%
TTCTTCATAAAAAGCCATCT+AGG + chr1.4:88445429-88445448 None:intergenic 30.0%
TTGAAGAGGTTGAACTAATA+TGG - chr1.4:88446207-88446226 MS.gene90111:CDS 30.0%
! AAAAAAGACATTTTGCGTTC+AGG + chr1.4:88444620-88444639 None:intergenic 30.0%
! AAAAAGACATTTTGCGTTCA+GGG + chr1.4:88444619-88444638 None:intergenic 30.0%
! ATATTAGCTCTTTGTAGCTT+AGG - chr1.4:88445807-88445826 MS.gene90111:CDS 30.0%
! TAAAGGATTAACCTTTGAAG+AGG - chr1.4:88446193-88446212 MS.gene90111:CDS 30.0%
!! AAGTTAATTTGTGTGAGTCT+TGG + chr1.4:88444736-88444755 None:intergenic 30.0%
AAATCCAGCCATTTGAACAA+TGG + chr1.4:88445685-88445704 None:intergenic 35.0%
AAGGTTAATCCTTTAGTCTC+CGG + chr1.4:88446188-88446207 None:intergenic 35.0%
AATATGGAAAGAGAGAGCTT+GGG - chr1.4:88446223-88446242 MS.gene90111:CDS 35.0%
ACAGCAAGAATCAAGAAAGT+AGG + chr1.4:88446125-88446144 None:intergenic 35.0%
AGAAATCAGACTAGCATTCA+TGG - chr1.4:88445593-88445612 MS.gene90111:CDS 35.0%
AGAATGAATTGAACAAGTGC+AGG + chr1.4:88445384-88445403 None:intergenic 35.0%
ATTTACCTCATTGATCATGC+AGG - chr1.4:88445777-88445796 MS.gene90111:CDS 35.0%
CATTATTGGAGCAATTGGTA+TGG - chr1.4:88445116-88445135 MS.gene90111:CDS 35.0%
CATTTCCAACATCTATGACT+TGG - chr1.4:88445473-88445492 MS.gene90111:CDS 35.0%
GAATATAGAGGAATTTGTGG+TGG - chr1.4:88446017-88446036 MS.gene90111:intron 35.0%
GAATGAATTGAACAAGTGCA+GGG + chr1.4:88445383-88445402 None:intergenic 35.0%
GACTAATGAACCTCTGATTT+CGG + chr1.4:88445250-88445269 None:intergenic 35.0%
GCAGATGTCATCTTCATTAT+TGG - chr1.4:88445102-88445121 MS.gene90111:CDS 35.0%
GGATCAAACATAGAACATGA+TGG + chr1.4:88444767-88444786 None:intergenic 35.0%
GTTTGTGCTTCTTTATGTTC+CGG - chr1.4:88446166-88446185 MS.gene90111:CDS 35.0%
TAATATGGAAAGAGAGAGCT+TGG - chr1.4:88446222-88446241 MS.gene90111:CDS 35.0%
TAGAGAAAGTAACATTCTGC+AGG - chr1.4:88444981-88445000 MS.gene90111:CDS 35.0%
TGTTAATGCCAGTAAACTGT+TGG + chr1.4:88445641-88445660 None:intergenic 35.0%
TTTACCTCATTGATCATGCA+GGG - chr1.4:88445778-88445797 MS.gene90111:CDS 35.0%
TTTCCATTGCTGAAGCTTTA+GGG - chr1.4:88446093-88446112 MS.gene90111:intron 35.0%
! GTCAGAGTTGTTGTTAATGT+TGG + chr1.4:88446255-88446274 None:intergenic 35.0%
!! AGTTGATTTTCTAACAGCTG+AGG - chr1.4:88445512-88445531 MS.gene90111:CDS 35.0%
!!! TATATTGCTTTTTTCTCCCC+CGG - chr1.4:88445948-88445967 MS.gene90111:intron 35.0%
AAAAGCCATCTAGGTGATTC+AGG + chr1.4:88445420-88445439 None:intergenic 40.0%
AAAGCCATCTAGGTGATTCA+GGG + chr1.4:88445419-88445438 None:intergenic 40.0%
AAAGGCGAGGTTAACTATGT+AGG + chr1.4:88445313-88445332 None:intergenic 40.0%
AATGAACCTCTGATTTCGGA+AGG + chr1.4:88445246-88445265 None:intergenic 40.0%
ATATGGAAAGAGAGAGCTTG+GGG - chr1.4:88446224-88446243 MS.gene90111:CDS 40.0%
ATCAGACTAGCATTCATGGT+TGG - chr1.4:88445597-88445616 MS.gene90111:CDS 40.0%
ATGGTGTTCCAACAGTTTAC+TGG - chr1.4:88445630-88445649 MS.gene90111:CDS 40.0%
CACAAACAAAAAGGCAAGCA+CGG + chr1.4:88446153-88446172 None:intergenic 40.0%
CAGTCCAACCATTGTTCAAA+TGG - chr1.4:88445674-88445693 MS.gene90111:CDS 40.0%
CGAGGTTAACTATGTAGGAA+AGG + chr1.4:88445308-88445327 None:intergenic 40.0%
CGTCCGATTATGAGAATGTA+AGG + chr1.4:88445156-88445175 None:intergenic 40.0%
CTTTATGTTCCGGAGACTAA+AGG - chr1.4:88446176-88446195 MS.gene90111:CDS 40.0%
CTTTCCATTGCTGAAGCTTT+AGG - chr1.4:88446092-88446111 MS.gene90111:intron 40.0%
GGTTGGATTAACGATGCTTA+CGG - chr1.4:88445057-88445076 MS.gene90111:CDS 40.0%
TATGTCAGCTACTGTGTGTT+GGG - chr1.4:88446040-88446059 MS.gene90111:intron 40.0%
! TGTCTGAGACACAATGAGAT+TGG + chr1.4:88446069-88446088 None:intergenic 40.0%
! TTAGCTCTTTGTAGCTTAGG+AGG - chr1.4:88445810-88445829 MS.gene90111:CDS 40.0%
!! AGGAGGAGTGTTTACATCTT+TGG - chr1.4:88445827-88445846 MS.gene90111:CDS 40.0%
!! ATCTTTGGTTCTCTTGTCTG+TGG - chr1.4:88445842-88445861 MS.gene90111:CDS 40.0%
!! CTTCTTGTTGGTTTAGGTGT+CGG - chr1.4:88445177-88445196 MS.gene90111:CDS 40.0%
!!! ATATTGCTTTTTTCTCCCCC+GGG - chr1.4:88445949-88445968 MS.gene90111:intron 40.0%
AATGCTGTCGGAACTGTTCT+TGG - chr1.4:88445753-88445772 MS.gene90111:CDS 45.0%
AATTCCCTCATGATCACCAG+TGG - chr1.4:88445276-88445295 MS.gene90111:CDS 45.0%
ACGAGCCAAGTCATAGATGT+TGG + chr1.4:88445481-88445500 None:intergenic 45.0%
ACTATGGTACAATCTACCCC+AGG - chr1.4:88444569-88444588 MS.gene90111:CDS 45.0%
AGTCCCTAAAGCTTCAGCAA+TGG + chr1.4:88446099-88446118 None:intergenic 45.0%
ATAATCGGACGCCTTCTTGT+TGG - chr1.4:88445165-88445184 MS.gene90111:CDS 45.0%
ATAGTCAGCATGGCAATAGC+TGG - chr1.4:88445009-88445028 MS.gene90111:CDS 45.0%
ATCTCTGAGTTCATTGCCCA+CGG + chr1.4:88445987-88446006 None:intergenic 45.0%
ATGCATGCAGGTGTGATATC+AGG - chr1.4:88444922-88444941 MS.gene90111:CDS 45.0%
CCAACCATTGTTCAAATGGC+TGG - chr1.4:88445678-88445697 MS.gene90111:CDS 45.0%
CCAGCCATTTGAACAATGGT+TGG + chr1.4:88445681-88445700 None:intergenic 45.0%
CGACACCTAAACCAACAAGA+AGG + chr1.4:88445179-88445198 None:intergenic 45.0%
CGGCATCAAATACTACTGGA+TGG - chr1.4:88445901-88445920 MS.gene90111:CDS 45.0%
GAGAATGTAAGGATCAGGTG+CGG + chr1.4:88445145-88445164 None:intergenic 45.0%
GATTTCGGAAGGTGATGCTT+CGG + chr1.4:88445235-88445254 None:intergenic 45.0%
GCAATAGCTGGTGCAATAGT+TGG - chr1.4:88445021-88445040 MS.gene90111:CDS 45.0%
GCAGGAAACAATAGTCAGCA+TGG - chr1.4:88444999-88445018 MS.gene90111:CDS 45.0%
GTATGTCAGCTACTGTGTGT+TGG - chr1.4:88446039-88446058 MS.gene90111:intron 45.0%
GTTGCAGCAATGAATGCTGT+CGG - chr1.4:88445741-88445760 MS.gene90111:CDS 45.0%
TGATGCTTCGGCAATGTAGA+CGG + chr1.4:88445223-88445242 None:intergenic 45.0%
TTGTCCACTGGTGATCATGA+GGG + chr1.4:88445283-88445302 None:intergenic 45.0%
! GCATCGGCATCAAATACTAC+TGG - chr1.4:88445897-88445916 MS.gene90111:CDS 45.0%
!! ACTGGATGGCTTGCAGTTTT+GGG - chr1.4:88445915-88445934 MS.gene90111:CDS 45.0%
!! ATTGCTGAAGCTTTAGGGAC+TGG - chr1.4:88446098-88446117 MS.gene90111:intron 45.0%
!! TACTGGATGGCTTGCAGTTT+TGG - chr1.4:88445914-88445933 MS.gene90111:CDS 45.0%
!! TTTTGGCTACGACACAGGTA+CGG - chr1.4:88444694-88444713 MS.gene90111:CDS 45.0%
!!! GGTATTGGTGGCTTGCTTTT+TGG - chr1.4:88444677-88444696 MS.gene90111:CDS 45.0%
!!! TTGCTTTTTGGCTACGACAC+AGG - chr1.4:88444689-88444708 MS.gene90111:CDS 45.0%
!! ACTAATAATTAAATAAAAAT+TGG - chr1.4:88444888-88444907 MS.gene90111:CDS 5.0%
AACATCCAACGCCAAGTACC+AGG + chr1.4:88445345-88445364 None:intergenic 50.0%
AATCTACCCCAGGTAGCTCA+GGG - chr1.4:88444579-88444598 MS.gene90111:CDS 50.0%
ACATCCAACGCCAAGTACCA+GGG + chr1.4:88445344-88445363 None:intergenic 50.0%
ACCTCATTGATCATGCAGGG+AGG - chr1.4:88445781-88445800 MS.gene90111:CDS 50.0%
ATAGTTGGAGCAGCAACAGG+TGG - chr1.4:88445036-88445055 MS.gene90111:CDS 50.0%
CAAATACCCTGAGCTACCTG+GGG + chr1.4:88444588-88444607 None:intergenic 50.0%
CATGGTTGGAGCAGGATTGA+TGG - chr1.4:88445611-88445630 MS.gene90111:CDS 50.0%
CCAAATACCCTGAGCTACCT+GGG + chr1.4:88444589-88444608 None:intergenic 50.0%
CGATGCTTACGGACGAAAGA+AGG - chr1.4:88445068-88445087 MS.gene90111:CDS 50.0%
CTAGCATTCATGGTTGGAGC+AGG - chr1.4:88445603-88445622 MS.gene90111:CDS 50.0%
GATCAATGTCCGTCCCAAGA+AGG + chr1.4:88446286-88446305 None:intergenic 50.0%
GATGCTTCGGCAATGTAGAC+GGG + chr1.4:88445222-88445241 None:intergenic 50.0%
GCAATAGTTGGAGCAGCAAC+AGG - chr1.4:88445033-88445052 MS.gene90111:CDS 50.0%
GCAGCGAGACCGAGAATATA+AGG + chr1.4:88444650-88444669 None:intergenic 50.0%
GCATCACCTTCCGAAATCAG+AGG - chr1.4:88445237-88445256 MS.gene90111:CDS 50.0%
GTAGGAAAGGAGTTGTCCAC+TGG + chr1.4:88445295-88445314 None:intergenic 50.0%
GTTGTCCACTGGTGATCATG+AGG + chr1.4:88445284-88445303 None:intergenic 50.0%
TCCAAATACCCTGAGCTACC+TGG + chr1.4:88444590-88444609 None:intergenic 50.0%
TCCTCCCTGAATCACCTAGA+TGG - chr1.4:88445412-88445431 MS.gene90111:CDS 50.0%
TCCTCCCTGCATGATCAATG+AGG + chr1.4:88445785-88445804 None:intergenic 50.0%
! CTGACTCGCGAAACCTTCTT+GGG - chr1.4:88446270-88446289 MS.gene90111:CDS 50.0%
! GGTACTTGGCGTTGGATGTT+GGG - chr1.4:88445345-88445364 MS.gene90111:CDS 50.0%
! TCTGACTCGCGAAACCTTCT+TGG - chr1.4:88446269-88446288 MS.gene90111:CDS 50.0%
! TGGTACTTGGCGTTGGATGT+TGG - chr1.4:88445344-88445363 MS.gene90111:CDS 50.0%
!! GGACGCCTTCTTGTTGGTTT+AGG - chr1.4:88445171-88445190 MS.gene90111:CDS 50.0%
AGTACCAGGGACACGCGTAA+AGG + chr1.4:88445331-88445350 None:intergenic 55.0%
CAATCTACCCCAGGTAGCTC+AGG - chr1.4:88444578-88444597 MS.gene90111:CDS 55.0%
CTCGCGAAACCTTCTTGGGA+CGG - chr1.4:88446274-88446293 MS.gene90111:CDS 55.0%
GCACTTGGATGCATGCATGC+AGG - chr1.4:88444910-88444929 MS.gene90111:CDS 55.0%
GCCATCTAGGTGATTCAGGG+AGG + chr1.4:88445416-88445435 None:intergenic 55.0%
TGGAAAGAGAGAGCTTGGGG+CGG - chr1.4:88446227-88446246 MS.gene90111:CDS 55.0%
TTACGCGTGTCCCTGGTACT+TGG - chr1.4:88445331-88445350 MS.gene90111:CDS 55.0%
TTCGGCAATGTAGACGGGAG+CGG + chr1.4:88445217-88445236 None:intergenic 55.0%
TTGGAGCAGCAACAGGTGGT+TGG - chr1.4:88445040-88445059 MS.gene90111:CDS 55.0%
! CCCAGGTAGCTCAGGGTATT+TGG - chr1.4:88444586-88444605 MS.gene90111:CDS 55.0%
!!! GCTTTTTTCTCCCCCGGGAT+GGG - chr1.4:88445954-88445973 MS.gene90111:intron 55.0%
!!! TGCTTTTTTCTCCCCCGGGA+TGG - chr1.4:88445953-88445972 MS.gene90111:intron 55.0%
CTCAGCAGCAGCAGCTGCAT+CGG - chr1.4:88445881-88445900 MS.gene90111:CDS 60.0%
CTCGCTGCTGTCGCTGGTAT+TGG - chr1.4:88444662-88444681 MS.gene90111:CDS 60.0%
GAGTTCATTGCCCACGGCAC+CGG + chr1.4:88445981-88446000 None:intergenic 60.0%
GTGTCCCTGGTACTTGGCGT+TGG - chr1.4:88445337-88445356 MS.gene90111:CDS 60.0%
! GCTGCTGTCGCTGGTATTGG+TGG - chr1.4:88444665-88444684 MS.gene90111:CDS 60.0%
CAGGGACACGCGTAAAGGCG+AGG + chr1.4:88445326-88445345 None:intergenic 65.0%
CGATGCAGCTGCTGCTGCTG+AGG + chr1.4:88445883-88445902 None:intergenic 65.0%
CTCGCCTTTACGCGTGTCCC+TGG - chr1.4:88445324-88445343 MS.gene90111:CDS 65.0%
GTAGACGGGAGCGGTGACAG+AGG + chr1.4:88445208-88445227 None:intergenic 65.0%
TTTCTCCCCCGGGATGGGAC+CGG - chr1.4:88445959-88445978 MS.gene90111:intron 65.0%
CTCGGTCTCGCTGCTGTCGC+TGG - chr1.4:88444656-88444675 MS.gene90111:CDS 70.0%
!! ACGGCACCGGTCCCATCCCG+GGG + chr1.4:88445968-88445987 None:intergenic 75.0%
!! CACGGCACCGGTCCCATCCC+GGG + chr1.4:88445969-88445988 None:intergenic 75.0%
!! CCACGGCACCGGTCCCATCC+CGG + chr1.4:88445970-88445989 None:intergenic 75.0%
!! CGGGATGGGACCGGTGCCGT+GGG - chr1.4:88445968-88445987 MS.gene90111:intron 75.0%
!! CCGGGATGGGACCGGTGCCG+TGG - chr1.4:88445967-88445986 MS.gene90111:intron 80.0%
!!! CGGCACCGGTCCCATCCCGG+GGG + chr1.4:88445967-88445986 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 88444557 88446310 88444557 ID=MS.gene90111
chr1.4 mRNA 88444557 88446310 88444557 ID=MS.gene90111.t1;Parent=MS.gene90111
chr1.4 exon 88446157 88446310 88446157 ID=MS.gene90111.t1.exon1;Parent=MS.gene90111.t1
chr1.4 CDS 88446157 88446310 88446157 ID=cds.MS.gene90111.t1;Parent=MS.gene90111.t1
chr1.4 exon 88444557 88445935 88444557 ID=MS.gene90111.t1.exon2;Parent=MS.gene90111.t1
chr1.4 CDS 88444557 88445935 88444557 ID=cds.MS.gene90111.t1;Parent=MS.gene90111.t1
Gene Sequence

>MS.gene90111

ATGACCAATACTACTATGGTACAATCTACCCCAGGTAGCTCAGGGTATTTGGATTTGTACCCTGAACGCAAAATGTCTTTTTTTAAGAATCCTTATATTCTCGGTCTCGCTGCTGTCGCTGGTATTGGTGGCTTGCTTTTTGGCTACGACACAGGTACGGTCCTACTATTTTATTTCCAAGACTCACACAAATTAACTTCATACATGCCATCATGTTCTATGTTTGATCCATCCATCTACTGAAATACTATTACTAATTAAGATCTTGTTGTCTTGTATCATATGTTAACTAACGTGGTTATATATAATTATTAACAGTGAATGACACAGTACTAATAATTAAATAAAAATTGGCACTTGGATGCATGCATGCAGGTGTGATATCAGGAGCTCTTCTATACATAAAAGATGATTTTGAATCGGTTAGAGAAAGTAACATTCTGCAGGAAACAATAGTCAGCATGGCAATAGCTGGTGCAATAGTTGGAGCAGCAACAGGTGGTTGGATTAACGATGCTTACGGACGAAAGAAGGCAACTCTGATCGCAGATGTCATCTTCATTATTGGAGCAATTGGTATGGCTGCCGCACCTGATCCTTACATTCTCATAATCGGACGCCTTCTTGTTGGTTTAGGTGTCGGCATTGCCTCTGTCACCGCTCCCGTCTACATTGCCGAAGCATCACCTTCCGAAATCAGAGGTTCATTAGTCAGTACTAATTCCCTCATGATCACCAGTGGACAACTCCTTTCCTACATAGTTAACCTCGCCTTTACGCGTGTCCCTGGTACTTGGCGTTGGATGTTGGGTGTTTCAGCTGTCCCTGCACTTGTTCAATTCATTCTCATGCTTTTCCTCCCTGAATCACCTAGATGGCTTTTTATGAAGAATAGAAAGAATGAAGCTGTTGATGTCATTTCCAACATCTATGACTTGGCTCGTCTTGAAGACGAAGTTGATTTTCTAACAGCTGAGGCAGAACAAGACAGACAGAAAAATATGAATGTCAAATTTGGAGATGTTTTTAAATCTAAAGAAATCAGACTAGCATTCATGGTTGGAGCAGGATTGATGGTGTTCCAACAGTTTACTGGCATTAACACAGTGATGTACTACAGTCCAACCATTGTTCAAATGGCTGGATTTCAATCTAATGAGTTGGCTCTTCAAATCTCACTCTTCGTTGCAGCAATGAATGCTGTCGGAACTGTTCTTGGTATTTACCTCATTGATCATGCAGGGAGGAAGATATTAGCTCTTTGTAGCTTAGGAGGAGTGTTTACATCTTTGGTTCTCTTGTCTGTGGCATTCTCAAATCAATCCTCAGCAGCAGCAGCTGCATCGGCATCAAATACTACTGGATGGCTTGCAGTTTTGGGTTTGATACTGTATATTGCTTTTTTCTCCCCCGGGATGGGACCGGTGCCGTGGGCAATGAACTCAGAGATATATCCTAAAGAATATAGAGGAATTTGTGGTGGTATGTCAGCTACTGTGTGTTGGGTTTCCAATCTCATTGTGTCTCAGACATTTCTTTCCATTGCTGAAGCTTTAGGGACTGGTCCTACTTTCTTGATTCTTGCTGTCATAACCGTGCTTGCCTTTTTGTTTGTGCTTCTTTATGTTCCGGAGACTAAAGGATTAACCTTTGAAGAGGTTGAACTAATATGGAAAGAGAGAGCTTGGGGCGGCACCAACATTAACAACAACTCTGACTCGCGAAACCTTCTTGGGACGGACATTGATCAATAA
Protein sequence

>MS.gene90111.t1

MTNTTMVQSTPGSSGYLDLYPERKMSFFKNPYILGLAAVAGIGGLLFGYDTGVISGALLYIKDDFESVRESNILQETIVSMAIAGAIVGAATGGWINDAYGRKKATLIADVIFIIGAIGMAAAPDPYILIIGRLLVGLGVGIASVTAPVYIAEASPSEIRGSLVSTNSLMITSGQLLSYIVNLAFTRVPGTWRWMLGVSAVPALVQFILMLFLPESPRWLFMKNRKNEAVDVISNIYDLARLEDEVDFLTAEAEQDRQKNMNVKFGDVFKSKEIRLAFMVGAGLMVFQQFTGINTVMYYSPTIVQMAGFQSNELALQISLFVAAMNAVGTVLGIYLIDHAGRKILALCSLGGVFTSLVLLSVAFSNQSSAAAAASASNTTGWLAVLGLILYIAFFSPGMGPVPWAMNSEIYPKEYRGICGGMSATVCWVSNLIVSQTFLSIAEALGTGPTFLILAVITVLAFLFVLLYVPETKGLTFEEVELIWKERAWGGTNINNNSDSRNLLGTDIDQ