Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90219.t1 | XP_003608391.2 | 95.5 | 708 | 23 | 3 | 1 | 699 | 1 | 708 | 0.00E+00 | 1210.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90219.t1 | Q93YW0 | 53.2 | 709 | 287 | 8 | 7 | 698 | 3 | 683 | 2.4e-178 | 627.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90219.t1 | G7JV40 | 95.5 | 708 | 23 | 3 | 1 | 699 | 1 | 708 | 0.0e+00 | 1210.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene90219 | 0.828239 | 1.00E-54 | -1.69E-46 |
| MS.gene049153 | MS.gene90219 | 0.803963 | 2.71E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene90219 | 0.806888 | 6.61E-50 | -1.69E-46 |
| MS.gene050301 | MS.gene90219 | 0.812717 | 3.68E-51 | -1.69E-46 |
| MS.gene051860 | MS.gene90219 | 0.834889 | 2.31E-56 | -1.69E-46 |
| MS.gene052188 | MS.gene90219 | 0.824202 | 9.17E-54 | -1.69E-46 |
| MS.gene053559 | MS.gene90219 | 0.818948 | 1.50E-52 | -1.69E-46 |
| MS.gene053577 | MS.gene90219 | 0.903183 | 4.51E-79 | -1.69E-46 |
| MS.gene053836 | MS.gene90219 | 0.834121 | 3.60E-56 | -1.69E-46 |
| MS.gene054930 | MS.gene90219 | 0.839659 | 1.39E-57 | -1.69E-46 |
| MS.gene056407 | MS.gene90219 | 0.803911 | 2.78E-49 | -1.69E-46 |
| MS.gene057448 | MS.gene90219 | 0.803073 | 4.15E-49 | -1.69E-46 |
| MS.gene057450 | MS.gene90219 | 0.810223 | 1.28E-50 | -1.69E-46 |
| MS.gene057469 | MS.gene90219 | 0.847524 | 1.10E-59 | -1.69E-46 |
| MS.gene05811 | MS.gene90219 | 0.802962 | 4.37E-49 | -1.69E-46 |
| MS.gene058142 | MS.gene90219 | 0.80652 | 7.91E-50 | -1.69E-46 |
| MS.gene058949 | MS.gene90219 | 0.823622 | 1.25E-53 | -1.69E-46 |
| MS.gene05907 | MS.gene90219 | 0.800587 | 1.34E-48 | -1.69E-46 |
| MS.gene059285 | MS.gene90219 | 0.806656 | 7.40E-50 | -1.69E-46 |
| MS.gene060495 | MS.gene90219 | 0.818285 | 2.12E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90219.t1 | MTR_4g093590 | 95.056 | 708 | 26 | 3 | 1 | 699 | 1 | 708 | 0.0 | 1305 |
| MS.gene90219.t1 | MTR_3g078020 | 40.514 | 622 | 307 | 16 | 90 | 697 | 56 | 628 | 6.19e-138 | 419 |
| MS.gene90219.t1 | MTR_4g106950 | 28.780 | 205 | 119 | 7 | 142 | 335 | 11 | 199 | 4.97e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90219.t1 | AT4G33630 | 51.821 | 714 | 293 | 11 | 5 | 698 | 1 | 683 | 0.0 | 643 |
| MS.gene90219.t1 | AT4G33630 | 51.821 | 714 | 293 | 11 | 5 | 698 | 1 | 683 | 0.0 | 643 |
| MS.gene90219.t1 | AT4G33630 | 51.821 | 714 | 293 | 11 | 5 | 698 | 1 | 683 | 0.0 | 643 |
| MS.gene90219.t1 | AT1G27510 | 38.063 | 599 | 320 | 10 | 109 | 697 | 92 | 649 | 2.82e-116 | 363 |
Find 179 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTATCATCACCACTTTC+TGG | 0.125978 | 4.2:-19858718 | None:intergenic |
| AACAAGAAAAGCACCATTTA+AGG | 0.162496 | 4.2:-19859606 | None:intergenic |
| GGCATAATTCCTGAAGAATT+TGG | 0.184513 | 4.2:+19861531 | MS.gene90219:CDS |
| ACTTCATTTGATCCCTTAAA+TGG | 0.216277 | 4.2:+19859593 | MS.gene90219:CDS |
| CAGAATCATCAACCATTATC+TGG | 0.244294 | 4.2:+19859539 | MS.gene90219:CDS |
| GGAAAATGATACAGAAATTC+TGG | 0.265547 | 4.2:+19858981 | MS.gene90219:CDS |
| TTGCAGGTGGGTTGGTGGGC+TGG | 0.268886 | 4.2:+19855020 | MS.gene90219:intron |
| TTTCAACCAGGCTTATATAT+TGG | 0.280789 | 4.2:+19859737 | MS.gene90219:intron |
| AGTGAGGATGAAGATGAAAA+TGG | 0.294516 | 4.2:+19858901 | MS.gene90219:CDS |
| CTGTTGTTGGATTTGTGTAT+TGG | 0.301064 | 4.2:+19861954 | MS.gene90219:CDS |
| AATACTTAGCCAACCTTTGC+AGG | 0.302638 | 4.2:-19859363 | None:intergenic |
| TTTCAGATTGCTCGCTATAA+AGG | 0.326758 | 4.2:+19861728 | MS.gene90219:intron |
| AGATCCTTGTCTACTTTCTC+TGG | 0.328873 | 4.2:-19858838 | None:intergenic |
| TGTTGTTGGATTTGTGTATT+GGG | 0.328933 | 4.2:+19861955 | MS.gene90219:CDS |
| AAAATCGTTGACCCAGATAA+TGG | 0.344302 | 4.2:-19859551 | None:intergenic |
| TCTGATCTTGCAAAATTCAT+TGG | 0.354439 | 4.2:+19859327 | MS.gene90219:CDS |
| GTAGAAGCCTTGAAAATAAC+CGG | 0.354442 | 4.2:+19859869 | MS.gene90219:CDS |
| GATAAATCAATTAAGTTTCA+AGG | 0.355553 | 4.2:+19859279 | MS.gene90219:CDS |
| ATCTCTAGGGGATAAATTGC+TGG | 0.365355 | 4.2:-19859145 | None:intergenic |
| GATGAAGATTTCCCTTTGTC+AGG | 0.367167 | 4.2:-19859255 | None:intergenic |
| CATACCACTCCAAATTCTTC+AGG | 0.377189 | 4.2:-19861540 | None:intergenic |
| ATGGTTTAGAGGACGTTGTT+GGG | 0.389821 | 4.2:-19858618 | None:intergenic |
| AGACAAGGATCTAATGTCTA+AGG | 0.398730 | 4.2:+19858849 | MS.gene90219:CDS |
| GAAGGAAGATTGGCAGAGCC+AGG | 0.415294 | 4.2:+19861752 | MS.gene90219:CDS |
| TGATACAGAAATTCTGGATC+TGG | 0.416518 | 4.2:+19858987 | MS.gene90219:CDS |
| ATTCTTATATGAACTTGCTT+AGG | 0.420300 | 4.2:+19853455 | MS.gene90219:CDS |
| ACCTGGCCAGCTGGTACATA+AGG | 0.421124 | 4.2:-19859896 | None:intergenic |
| ACTAGCATCCAATGGTTTAG+AGG | 0.421647 | 4.2:-19858629 | None:intergenic |
| GACCCTGCTGAGGGAATACC+TGG | 0.424681 | 4.2:+19858751 | MS.gene90219:CDS |
| GCCATGTATCTTCCATGCTC+TGG | 0.424963 | 4.2:-19855092 | None:intergenic |
| GGCGAACTGGTGATTCTTGA+TGG | 0.429087 | 4.2:+19861800 | MS.gene90219:CDS |
| GGCTCTTGCAGGTGGGTTGG+TGG | 0.429195 | 4.2:+19855015 | MS.gene90219:intron |
| GAAGGGAAGGGCGTTTGAGA+GGG | 0.435801 | 4.2:-19853288 | None:intergenic |
| ATGGTTGATGATTCTGAGCC+TGG | 0.437377 | 4.2:-19859532 | None:intergenic |
| GCTTCGAGTTCCTGCTAAGC+TGG | 0.437447 | 4.2:+19859170 | MS.gene90219:CDS |
| GTCTTGAAAGATATGATTCC+TGG | 0.440863 | 4.2:+19858784 | MS.gene90219:CDS |
| CAGAATCCTCGATGGGTTGA+CGG | 0.441475 | 4.2:+19861779 | MS.gene90219:CDS |
| ACTGATCAAGAGGGAGATGA+TGG | 0.443283 | 4.2:+19859027 | MS.gene90219:CDS |
| ATTCAAATGAGACGTAGATA+TGG | 0.444516 | 4.2:+19859788 | MS.gene90219:CDS |
| TCCTTATGTACCAGCTGGCC+AGG | 0.445356 | 4.2:+19859895 | MS.gene90219:CDS |
| ATAAAAGCAGGGCCTGTTGT+TGG | 0.449972 | 4.2:+19861941 | MS.gene90219:CDS |
| ACAAGAAAAGCACCATTTAA+GGG | 0.452169 | 4.2:-19859605 | None:intergenic |
| TGAAGAAGCTGCCAAGCTTA+AGG | 0.453306 | 4.2:+19854197 | MS.gene90219:CDS |
| GTTGAGAAGGGAAGTGAAGA+AGG | 0.453474 | 4.2:-19853306 | None:intergenic |
| GTGATGTTCACGATGATGAT+TGG | 0.453507 | 4.2:+19853506 | MS.gene90219:CDS |
| TTAAGAGATAAAGCGGGTGC+TGG | 0.455448 | 4.2:+19854436 | MS.gene90219:CDS |
| GCGTTTGAGAGGGAAGGTTG+TGG | 0.456921 | 4.2:-19853278 | None:intergenic |
| TCCTTCATCTCCAGCTTAGC+AGG | 0.457418 | 4.2:-19859180 | None:intergenic |
| GGTGATTGAGGAATTATTTG+AGG | 0.459479 | 4.2:+19858870 | MS.gene90219:CDS |
| CAGCTAACAATGACAGTGTT+GGG | 0.460581 | 4.2:+19854235 | MS.gene90219:CDS |
| GGGTACCAACTTCCACATAA+AGG | 0.460668 | 4.2:+19861510 | MS.gene90219:CDS |
| GCTCTTGCAGGTGGGTTGGT+GGG | 0.465325 | 4.2:+19855016 | MS.gene90219:intron |
| GTGGCATTTCGTGCAAAAGT+TGG | 0.472710 | 4.2:+19861483 | MS.gene90219:CDS |
| ATTGTGATAAATAGTGATCT+TGG | 0.474745 | 4.2:+19859051 | MS.gene90219:CDS |
| TTCAAGACATTCTGAAATCC+AGG | 0.474941 | 4.2:-19858769 | None:intergenic |
| TCCTGCTAAGCTGGAGATGA+AGG | 0.475250 | 4.2:+19859179 | MS.gene90219:CDS |
| CATCGAGGATTCTGAAACCC+TGG | 0.475587 | 4.2:-19861770 | None:intergenic |
| CATGATATTACCTGGCCAGC+TGG | 0.478968 | 4.2:-19859905 | None:intergenic |
| ATGCTCAGCGAATTCGTAAC+CGG | 0.481082 | 4.2:+19853415 | MS.gene90219:CDS |
| TTCACGATGATGATTGGGAT+TGG | 0.481484 | 4.2:+19853512 | MS.gene90219:CDS |
| AGCTGGATGGTCCTGACAAA+GGG | 0.483919 | 4.2:+19859244 | MS.gene90219:CDS |
| ATCCAGAAAGTGGTGATGAT+AGG | 0.485466 | 4.2:+19858716 | MS.gene90219:CDS |
| TGGTCTTCTTCAATCGGCTT+AGG | 0.485777 | 4.2:+19861996 | MS.gene90219:CDS |
| TCAGGAATTATGCCTTTATG+TGG | 0.485937 | 4.2:-19861522 | None:intergenic |
| GGATAATGAGAAGACGTTCC+TGG | 0.486464 | 4.2:-19853570 | None:intergenic |
| TCGATGGGTTGACGGCGAAC+TGG | 0.487669 | 4.2:+19861787 | MS.gene90219:CDS |
| TTTAAGGGATCAAATGAAGT+TGG | 0.487879 | 4.2:-19859590 | None:intergenic |
| CTGTGTACCTAAAGCGAAAA+GGG | 0.489273 | 4.2:+19858581 | MS.gene90219:CDS |
| CTATAAAGGTGAAGGAAGAT+TGG | 0.490683 | 4.2:+19861742 | MS.gene90219:CDS |
| ATTTGAGGAAGAAGAGAGTG+AGG | 0.490887 | 4.2:+19858885 | MS.gene90219:CDS |
| AATCCAGGTATTCCCTCAGC+AGG | 0.492533 | 4.2:-19858754 | None:intergenic |
| GAAGGGAAGTGAAGAAGGGA+AGG | 0.493115 | 4.2:-19853301 | None:intergenic |
| TTATGCCTTTATGTGGAAGT+TGG | 0.496915 | 4.2:-19861515 | None:intergenic |
| GCTGTGTACCTAAAGCGAAA+AGG | 0.499106 | 4.2:+19858580 | MS.gene90219:CDS |
| AATGGTTTAGAGGACGTTGT+TGG | 0.499517 | 4.2:-19858619 | None:intergenic |
| TCTAAACCATTGGATGCTAG+TGG | 0.500108 | 4.2:+19858631 | MS.gene90219:CDS |
| GTTGTGGTTGTCGTCGGAGA+CGG | 0.502569 | 4.2:-19853350 | None:intergenic |
| GGATCTGGAAGACATTAAGT+TGG | 0.507763 | 4.2:+19859002 | MS.gene90219:CDS |
| CTGGCGTCAGCATTTCGATC+AGG | 0.508636 | 4.2:+19853540 | MS.gene90219:CDS |
| CAATACACAAATCCAACAAC+AGG | 0.509155 | 4.2:-19861953 | None:intergenic |
| GGCTTATATATTGGTGCATA+CGG | 0.510863 | 4.2:+19859746 | MS.gene90219:intron |
| GGAACTCGAAGCAAATCTCT+AGG | 0.511114 | 4.2:-19859159 | None:intergenic |
| ATCGAATTGTTTAATTGCGC+CGG | 0.512264 | 4.2:-19853434 | None:intergenic |
| TTGAGAAGGGAAGTGAAGAA+GGG | 0.515623 | 4.2:-19853305 | None:intergenic |
| TGTACTGTTGTGGTTGTCGT+CGG | 0.518748 | 4.2:-19853356 | None:intergenic |
| TTTCGTGCAAAAGTTGGAAA+GGG | 0.520545 | 4.2:+19861489 | MS.gene90219:CDS |
| TCGGCTTAGGCTTCAACAGT+AGG | 0.520867 | 4.2:+19862009 | MS.gene90219:CDS |
| TGCGATCGCCACCTTAAGCT+TGG | 0.521130 | 4.2:-19854208 | None:intergenic |
| CGCCATCGTTTGTACTGTTG+TGG | 0.522210 | 4.2:-19853366 | None:intergenic |
| ATCGGCTCTTGCAGGTGGGT+TGG | 0.524231 | 4.2:+19855012 | MS.gene90219:intron |
| AGAAGGGAAGGGCGTTTGAG+AGG | 0.524467 | 4.2:-19853289 | None:intergenic |
| TGATGTTCACGATGATGATT+GGG | 0.524545 | 4.2:+19853507 | MS.gene90219:CDS |
| ACTGGTGATTCTTGATGGAA+AGG | 0.526262 | 4.2:+19861805 | MS.gene90219:CDS |
| AACAACGTCCTCTAAACCAT+TGG | 0.527043 | 4.2:+19858621 | MS.gene90219:CDS |
| ATTGCTGTCAAAGTTGTCAT+TGG | 0.527238 | 4.2:+19859102 | MS.gene90219:CDS |
| TGGCAAGGAGTTATAGTCCT+AGG | 0.530789 | 4.2:+19855111 | MS.gene90219:CDS |
| AAAAGGTGACTTTAAGTCGC+AGG | 0.534499 | 4.2:+19856525 | MS.gene90219:CDS |
| TCTAATGTCTAAGGTGATTG+AGG | 0.535692 | 4.2:+19858858 | MS.gene90219:CDS |
| CAACTTGCAACATCTGCTGC+TGG | 0.537244 | 4.2:+19856466 | MS.gene90219:CDS |
| AAAATCTTCACCTTCACACC+AGG | 0.537647 | 4.2:-19858802 | None:intergenic |
| CAGAGACATAACGGTTGAGA+AGG | 0.539217 | 4.2:-19853319 | None:intergenic |
| GCAGCTAACAATGACAGTGT+TGG | 0.540513 | 4.2:+19854234 | MS.gene90219:CDS |
| GATAAGTCTCACTCTAAGCC+AGG | 0.543885 | 4.2:+19859514 | MS.gene90219:CDS |
| GGAAGGGCGTTTGAGAGGGA+AGG | 0.544555 | 4.2:-19853284 | None:intergenic |
| TGGTTTAGAGGACGTTGTTG+GGG | 0.544662 | 4.2:-19858617 | None:intergenic |
| ATTACGTCATGCTGTATATG+TGG | 0.546678 | 4.2:+19854167 | MS.gene90219:CDS |
| TGAAAACGAAGTCAATCAGC+TGG | 0.546784 | 4.2:+19859227 | MS.gene90219:CDS |
| GAACTCGAAGCAAATCTCTA+GGG | 0.553123 | 4.2:-19859158 | None:intergenic |
| TTTCGATCAGGTTGATGACC+AGG | 0.559219 | 4.2:+19853552 | MS.gene90219:CDS |
| GCTGTCAAAGTTGTCATTGG+TGG | 0.560173 | 4.2:+19859105 | MS.gene90219:CDS |
| ATTTCGTGCAAAAGTTGGAA+AGG | 0.563212 | 4.2:+19861488 | MS.gene90219:CDS |
| AGAATCATCAACCATTATCT+GGG | 0.563332 | 4.2:+19859540 | MS.gene90219:CDS |
| TGAGAGGGAAGGTTGTGGAG+AGG | 0.564631 | 4.2:-19853273 | None:intergenic |
| GTCAATGGCAAGAGGACGGT+AGG | 0.565511 | 4.2:+19859810 | MS.gene90219:CDS |
| ATGATTGGGATTGGAATCGC+TGG | 0.567951 | 4.2:+19853521 | MS.gene90219:CDS |
| TCTTGCAAAATTCATTGGCA+AGG | 0.568463 | 4.2:+19859332 | MS.gene90219:CDS |
| TAAGTTGGAAACTGATCAAG+AGG | 0.571150 | 4.2:+19859017 | MS.gene90219:CDS |
| CTGATCAAGAGGGAGATGAT+GGG | 0.571236 | 4.2:+19859028 | MS.gene90219:CDS |
| ACGTCTTCTCATTATCCTCA+AGG | 0.573451 | 4.2:+19853576 | MS.gene90219:CDS |
| CGCTGAGCATCGAATCCCAC+CGG | 0.573541 | 4.2:-19853402 | None:intergenic |
| TGAGACGTAGATATGGTCAA+TGG | 0.575070 | 4.2:+19859795 | MS.gene90219:CDS |
| CAGCTGGATGGTCCTGACAA+AGG | 0.575602 | 4.2:+19859243 | MS.gene90219:CDS |
| GCAAGAGGACGGTAGGGCGA+AGG | 0.581205 | 4.2:+19859817 | MS.gene90219:CDS |
| TATATGAACTTGCTTAGGAG+AGG | 0.581864 | 4.2:+19853460 | MS.gene90219:CDS |
| GCGACGGTAACAACCGCCGG+TGG | 0.583150 | 4.2:+19853386 | MS.gene90219:CDS |
| AAGGGAAGTGAAGAAGGGAA+GGG | 0.583385 | 4.2:-19853300 | None:intergenic |
| GGGGATCCTTATGTACCAGC+TGG | 0.584664 | 4.2:+19859890 | MS.gene90219:CDS |
| AGTGGTGATGATAGGAATGA+TGG | 0.585157 | 4.2:+19858724 | MS.gene90219:CDS |
| AGCTGGTACATAAGGATCCC+CGG | 0.585540 | 4.2:-19859888 | None:intergenic |
| ATGGCGACGGTAACAACCGC+CGG | 0.587272 | 4.2:+19853383 | MS.gene90219:CDS |
| AACGAAGTCAATCAGCTGGA+TGG | 0.589327 | 4.2:+19859231 | MS.gene90219:CDS |
| TAGTGGGAGATCGAGTTCAA+TGG | 0.592088 | 4.2:+19858648 | MS.gene90219:CDS |
| TGATGGCTCTGACCCTGCTG+AGG | 0.594277 | 4.2:+19858741 | MS.gene90219:CDS |
| TAGAAGCCTTGAAAATAACC+GGG | 0.595455 | 4.2:+19859870 | MS.gene90219:CDS |
| TCCAGAGCATGGAAGATACA+TGG | 0.595525 | 4.2:+19855091 | MS.gene90219:CDS |
| AGGGTTTCAGAATCCTCGAT+GGG | 0.596282 | 4.2:+19861772 | MS.gene90219:CDS |
| CAAGGATAAAGTACCTGCAA+AGG | 0.597432 | 4.2:+19859350 | MS.gene90219:CDS |
| AAGGAAGATTGGCAGAGCCA+GGG | 0.598137 | 4.2:+19861753 | MS.gene90219:CDS |
| TTATAGGTGCTGAAAGAGGT+AGG | 0.599822 | 4.2:+19859485 | MS.gene90219:intron |
| TGGGAAAGTGAGGTGTGGAG+TGG | 0.600919 | 4.2:-19853242 | None:intergenic |
| AGAGACATAACGGTTGAGAA+GGG | 0.601243 | 4.2:-19853318 | None:intergenic |
| CTAAACCATTGGATGCTAGT+GGG | 0.606784 | 4.2:+19858632 | MS.gene90219:CDS |
| ATTGCTCGCTATAAAGGTGA+AGG | 0.614217 | 4.2:+19861734 | MS.gene90219:CDS |
| ATTCGCATAACTCCAGAGCA+TGG | 0.619023 | 4.2:+19855080 | MS.gene90219:CDS |
| GAGTTGAGACAGAGACATAA+CGG | 0.619755 | 4.2:-19853328 | None:intergenic |
| CAGGGTTTCAGAATCCTCGA+TGG | 0.621991 | 4.2:+19861771 | MS.gene90219:CDS |
| TGACAGTGAAGATGAAGACA+AGG | 0.622731 | 4.2:+19858960 | MS.gene90219:CDS |
| AATCTTATAGGTGCTGAAAG+AGG | 0.625560 | 4.2:+19859481 | MS.gene90219:intron |
| CGACGGTAACAACCGCCGGT+GGG | 0.626255 | 4.2:+19853387 | MS.gene90219:CDS |
| TTCGTGCAAAAGTTGGAAAG+GGG | 0.629131 | 4.2:+19861490 | MS.gene90219:CDS |
| CGTGCTGCTGATAAAGAAGA+CGG | 0.635990 | 4.2:+19853484 | MS.gene90219:CDS |
| AACTCCAGAGAAAGTAGACA+AGG | 0.636781 | 4.2:+19858834 | MS.gene90219:CDS |
| GATGAAAATGGAGAAGATGA+CGG | 0.637566 | 4.2:+19858913 | MS.gene90219:CDS |
| GATCTCCCACTAGCATCCAA+TGG | 0.639472 | 4.2:-19858637 | None:intergenic |
| GATGACGGCGACGAAGACGA+CGG | 0.640000 | 4.2:+19858928 | MS.gene90219:CDS |
| TCAATGGCAAGAGGACGGTA+GGG | 0.641899 | 4.2:+19859811 | MS.gene90219:CDS |
| TATGGTCAATGGCAAGAGGA+CGG | 0.642128 | 4.2:+19859806 | MS.gene90219:CDS |
| AGTACTGAAGATCCAGAAAG+TGG | 0.643156 | 4.2:+19858706 | MS.gene90219:CDS |
| AACTCGAAGCAAATCTCTAG+GGG | 0.644855 | 4.2:-19859157 | None:intergenic |
| TAGATATGGTCAATGGCAAG+AGG | 0.645192 | 4.2:+19859802 | MS.gene90219:CDS |
| GATGGCTCTGACCCTGCTGA+GGG | 0.645476 | 4.2:+19858742 | MS.gene90219:CDS |
| AGATATGATTCCTGGTGTGA+AGG | 0.648291 | 4.2:+19858792 | MS.gene90219:CDS |
| ACGTCATGCTGTATATGTGG+AGG | 0.648411 | 4.2:+19854170 | MS.gene90219:CDS |
| AGCATGGAAGATACATGGCA+AGG | 0.655041 | 4.2:+19855096 | MS.gene90219:CDS |
| AATTCCTGAAGAATTTGGAG+TGG | 0.655235 | 4.2:+19861536 | MS.gene90219:CDS |
| ATGCGAATAATTAGACCATG+TGG | 0.655540 | 4.2:-19855065 | None:intergenic |
| AGAAGCTGCCAAGCTTAAGG+TGG | 0.664484 | 4.2:+19854200 | MS.gene90219:CDS |
| GGTTTAGAGGACGTTGTTGG+GGG | 0.666760 | 4.2:-19858616 | None:intergenic |
| ATCCAGGTATTCCCTCAGCA+GGG | 0.668053 | 4.2:-19858753 | None:intergenic |
| AACAGTACAAACGATGGCGA+CGG | 0.670972 | 4.2:+19853370 | MS.gene90219:CDS |
| AAGCGAAAAGGGTCCTACCA+CGG | 0.671399 | 4.2:+19858592 | MS.gene90219:CDS |
| CGTCTTCTTTATCAGCAGCA+CGG | 0.673191 | 4.2:-19853483 | None:intergenic |
| TGAGCATCGAATCCCACCGG+CGG | 0.680677 | 4.2:-19853399 | None:intergenic |
| AAAGATGTGAACGATCCACA+TGG | 0.683209 | 4.2:+19855050 | MS.gene90219:CDS |
| AACCACAACAGTACAAACGA+TGG | 0.710045 | 4.2:+19853364 | MS.gene90219:CDS |
| AGAGAGCCATAAAAGAAGAG+CGG | 0.715120 | 4.2:+19854395 | MS.gene90219:intron |
| AGTTCGCCGTCAACCCATCG+AGG | 0.722680 | 4.2:-19861785 | None:intergenic |
| AAGTTGGAAACTGATCAAGA+GGG | 0.742549 | 4.2:+19859018 | MS.gene90219:CDS |
| AGAAGCCTTGAAAATAACCG+GGG | 0.742842 | 4.2:+19859871 | MS.gene90219:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 19853217 | 19862030 | 19853217 | ID=MS.gene90219 |
| chr4.2 | mRNA | 19853217 | 19862030 | 19853217 | ID=MS.gene90219.t1;Parent=MS.gene90219 |
| chr4.2 | exon | 19853217 | 19853597 | 19853217 | ID=MS.gene90219.t1.exon1;Parent=MS.gene90219.t1 |
| chr4.2 | CDS | 19853217 | 19853597 | 19853217 | ID=cds.MS.gene90219.t1;Parent=MS.gene90219.t1 |
| chr4.2 | exon | 19854162 | 19854278 | 19854162 | ID=MS.gene90219.t1.exon2;Parent=MS.gene90219.t1 |
| chr4.2 | CDS | 19854162 | 19854278 | 19854162 | ID=cds.MS.gene90219.t1;Parent=MS.gene90219.t1 |
| chr4.2 | exon | 19854397 | 19854462 | 19854397 | ID=MS.gene90219.t1.exon3;Parent=MS.gene90219.t1 |
| chr4.2 | CDS | 19854397 | 19854462 | 19854397 | ID=cds.MS.gene90219.t1;Parent=MS.gene90219.t1 |
| chr4.2 | exon | 19855026 | 19855132 | 19855026 | ID=MS.gene90219.t1.exon4;Parent=MS.gene90219.t1 |
| chr4.2 | CDS | 19855026 | 19855132 | 19855026 | ID=cds.MS.gene90219.t1;Parent=MS.gene90219.t1 |
| chr4.2 | exon | 19856465 | 19856546 | 19856465 | ID=MS.gene90219.t1.exon5;Parent=MS.gene90219.t1 |
| chr4.2 | CDS | 19856465 | 19856546 | 19856465 | ID=cds.MS.gene90219.t1;Parent=MS.gene90219.t1 |
| chr4.2 | exon | 19858580 | 19859371 | 19858580 | ID=MS.gene90219.t1.exon6;Parent=MS.gene90219.t1 |
| chr4.2 | CDS | 19858580 | 19859371 | 19858580 | ID=cds.MS.gene90219.t1;Parent=MS.gene90219.t1 |
| chr4.2 | exon | 19859491 | 19859614 | 19859491 | ID=MS.gene90219.t1.exon7;Parent=MS.gene90219.t1 |
| chr4.2 | CDS | 19859491 | 19859614 | 19859491 | ID=cds.MS.gene90219.t1;Parent=MS.gene90219.t1 |
| chr4.2 | exon | 19859747 | 19859916 | 19859747 | ID=MS.gene90219.t1.exon8;Parent=MS.gene90219.t1 |
| chr4.2 | CDS | 19859747 | 19859916 | 19859747 | ID=cds.MS.gene90219.t1;Parent=MS.gene90219.t1 |
| chr4.2 | exon | 19861483 | 19861557 | 19861483 | ID=MS.gene90219.t1.exon9;Parent=MS.gene90219.t1 |
| chr4.2 | CDS | 19861483 | 19861557 | 19861483 | ID=cds.MS.gene90219.t1;Parent=MS.gene90219.t1 |
| chr4.2 | exon | 19861734 | 19861826 | 19861734 | ID=MS.gene90219.t1.exon10;Parent=MS.gene90219.t1 |
| chr4.2 | CDS | 19861734 | 19861826 | 19861734 | ID=cds.MS.gene90219.t1;Parent=MS.gene90219.t1 |
| chr4.2 | exon | 19861938 | 19862030 | 19861938 | ID=MS.gene90219.t1.exon11;Parent=MS.gene90219.t1 |
| chr4.2 | CDS | 19861938 | 19862030 | 19861938 | ID=cds.MS.gene90219.t1;Parent=MS.gene90219.t1 |
| Gene Sequence |
| Protein sequence |
