Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90225.t1 | XP_003610866.2 | 97.4 | 312 | 8 | 0 | 1 | 312 | 1 | 312 | 4.00E-121 | 444.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90225.t1 | Q5M882 | 38.0 | 100 | 58 | 2 | 213 | 308 | 105 | 204 | 1.3e-11 | 72.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90225.t1 | G7K6I6 | 97.4 | 312 | 8 | 0 | 1 | 312 | 1 | 312 | 2.9e-121 | 444.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053583 | MS.gene90225 | 0.870714 | 1.18E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene049112 | MS.gene90225 | PPI |
| MS.gene05906 | MS.gene90225 | PPI |
| MS.gene04750 | MS.gene90225 | PPI |
| MS.gene90225 | MS.gene015759 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90225.t1 | MTR_5g007880 | 96.154 | 312 | 12 | 0 | 1 | 312 | 1 | 312 | 0.0 | 627 |
| MS.gene90225.t1 | MTR_5g007880 | 96.071 | 280 | 11 | 0 | 1 | 280 | 1 | 280 | 0.0 | 562 |
| MS.gene90225.t1 | MTR_5g014220 | 76.923 | 39 | 9 | 0 | 115 | 153 | 43 | 81 | 2.71e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90225.t1 | AT2G43190 | 54.274 | 234 | 102 | 2 | 75 | 308 | 62 | 290 | 8.15e-84 | 254 |
| MS.gene90225.t1 | AT2G43190 | 54.274 | 234 | 102 | 2 | 75 | 308 | 62 | 290 | 8.15e-84 | 254 |
| MS.gene90225.t1 | AT2G43190 | 57.407 | 216 | 91 | 1 | 93 | 308 | 75 | 289 | 2.27e-83 | 253 |
| MS.gene90225.t1 | AT2G43190 | 57.407 | 216 | 91 | 1 | 93 | 308 | 75 | 289 | 2.27e-83 | 253 |
| MS.gene90225.t1 | AT2G43190 | 44.017 | 234 | 91 | 2 | 75 | 308 | 62 | 255 | 8.57e-57 | 184 |
Find 58 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTGAAACTGCAGAAGCTTT+TGG | 0.202603 | 4.2:+19905640 | MS.gene90225:CDS |
| GAAAGAGGAGGTTCAGTTTC+CGG | 0.213770 | 4.2:+19904095 | MS.gene90225:CDS |
| TGCCACCAGTTCCAGTAAAA+TGG | 0.225932 | 4.2:-19905609 | None:intergenic |
| AACTTACTTATGGAACTCTT+TGG | 0.264485 | 4.2:-19904336 | None:intergenic |
| GAAAATCTGCTCACAACTAA+TGG | 0.271857 | 4.2:+19903913 | MS.gene90225:CDS |
| TAAAATTGAATTACCTTTGT+TGG | 0.337100 | 4.2:-19903051 | None:intergenic |
| AAAATCTGCTCACAACTAAT+GGG | 0.354040 | 4.2:+19903914 | MS.gene90225:CDS |
| TTGTACTACAAGTTGATTGC+TGG | 0.357928 | 4.2:+19906660 | MS.gene90225:CDS |
| ACAGAAAGTTGGGCATATTC+TGG | 0.385740 | 4.2:-19903880 | None:intergenic |
| TCCGATGATGGACGACATAA+AGG | 0.385790 | 4.2:-19903023 | None:intergenic |
| GAAACGTGCAATGGAGGCTT+TGG | 0.387822 | 4.2:+19902842 | MS.gene90225:CDS |
| AAAATTGAATTACCTTTGTT+GGG | 0.395569 | 4.2:-19903050 | None:intergenic |
| AAGAAGTTCATGCAATATTC+CGG | 0.396909 | 4.2:-19904114 | None:intergenic |
| GAAGTAGAGGGTGGTGGAGT+AGG | 0.406154 | 4.2:-19902984 | None:intergenic |
| CATTTACAGTCACAGAAAGT+TGG | 0.409130 | 4.2:-19903891 | None:intergenic |
| AAACTAGATTCAAGAAAGGT+TGG | 0.424013 | 4.2:+19906704 | MS.gene90225:CDS |
| ATTTACAGTCACAGAAAGTT+GGG | 0.425288 | 4.2:-19903890 | None:intergenic |
| ACTTACTTATGGAACTCTTT+GGG | 0.426320 | 4.2:-19904335 | None:intergenic |
| TTCATTCAAAACGTTCTAAG+AGG | 0.430799 | 4.2:+19904267 | MS.gene90225:CDS |
| CAGTACAGTACCTTGTGAAA+TGG | 0.436121 | 4.2:-19903713 | None:intergenic |
| TGCTGGAAAGCCACTCTGCT+TGG | 0.452437 | 4.2:+19906677 | MS.gene90225:CDS |
| TTGTTCCAGGAATAATCAAT+TGG | 0.458394 | 4.2:+19904776 | MS.gene90225:intron |
| AAGTTGTTGCTTAAATCCAC+TGG | 0.460350 | 4.2:+19904642 | MS.gene90225:CDS |
| GCCTTTATGTCGTCCATCAT+CGG | 0.460662 | 4.2:+19903022 | MS.gene90225:CDS |
| GCCACCAGTTCCAGTAAAAT+GGG | 0.464672 | 4.2:-19905608 | None:intergenic |
| TTCTTCATCTTCTCAGACAA+GGG | 0.467025 | 4.2:+19904235 | MS.gene90225:CDS |
| AATTGCAGTTGTTCCGAAGA+AGG | 0.469187 | 4.2:+19906628 | MS.gene90225:intron |
| TATCAATGGCTGCTGAATCA+AGG | 0.478212 | 4.2:+19902820 | None:intergenic |
| ACAAATACAGAACCCTTCTT+CGG | 0.485262 | 4.2:-19906641 | None:intergenic |
| CAATTGGCTCAATGTCTCCT+AGG | 0.493446 | 4.2:+19904792 | MS.gene90225:CDS |
| TTTCTTCATCTTCTCAGACA+AGG | 0.512698 | 4.2:+19904234 | MS.gene90225:CDS |
| TCTTTCCACATGTCATGCAT+TGG | 0.514242 | 4.2:-19904612 | None:intergenic |
| TTGTTGGGTGTATCCGATGA+TGG | 0.532259 | 4.2:-19903035 | None:intergenic |
| ATTGCAGTTGTTCCGAAGAA+GGG | 0.540540 | 4.2:+19906629 | MS.gene90225:intron |
| CTTGCACAAAATTATCAAGA+AGG | 0.550602 | 4.2:-19904202 | None:intergenic |
| ATTGCATGAACTTCTTCAGA+AGG | 0.551548 | 4.2:+19904121 | MS.gene90225:CDS |
| TCATTAGAAGTAGAGGGTGG+TGG | 0.559781 | 4.2:-19902990 | None:intergenic |
| AGATAAACTAGATTCAAGAA+AGG | 0.561327 | 4.2:+19906700 | MS.gene90225:CDS |
| ACTGAAGCTAATAAATTCCA+AGG | 0.566213 | 4.2:+19905670 | MS.gene90225:CDS |
| TTTGGTCGTGCCATTTCACA+AGG | 0.566627 | 4.2:+19903703 | MS.gene90225:CDS |
| CTCCTAGGTGCAGATCTACA+TGG | 0.569680 | 4.2:+19904807 | MS.gene90225:CDS |
| GGACGGATCATTAGAAGTAG+AGG | 0.570525 | 4.2:-19902997 | None:intergenic |
| ATCAAGGAAACGTGCAATGG+AGG | 0.577785 | 4.2:+19902836 | MS.gene90225:CDS |
| TAATCTGTAGAGAAAGAAGA+TGG | 0.577837 | 4.2:+19903856 | MS.gene90225:intron |
| TTGCATGAACTTCTTCAGAA+GGG | 0.595042 | 4.2:+19904122 | MS.gene90225:CDS |
| AGTTGTTGCTTAAATCCACT+GGG | 0.610453 | 4.2:+19904643 | MS.gene90225:CDS |
| TCAAGCCAATGCATGACATG+TGG | 0.623887 | 4.2:+19904607 | MS.gene90225:CDS |
| GGACGACATAAAGGCAAGGA+CGG | 0.625054 | 4.2:-19903014 | None:intergenic |
| GACGGATCATTAGAAGTAGA+GGG | 0.632740 | 4.2:-19902996 | None:intergenic |
| GCAGCACAAAAGTACATGCA+AGG | 0.640542 | 4.2:+19904149 | MS.gene90225:CDS |
| TCTGCTCACAACTAATGGGG+AGG | 0.647144 | 4.2:+19903918 | MS.gene90225:CDS |
| TGAATCAAGGAAACGTGCAA+TGG | 0.657298 | 4.2:+19902833 | MS.gene90225:CDS |
| AAATCTGCTCACAACTAATG+GGG | 0.672764 | 4.2:+19903915 | MS.gene90225:CDS |
| TCATCGGATACACCCAACAA+AGG | 0.673500 | 4.2:+19903038 | MS.gene90225:CDS |
| TAGTTTATCTCCAAGCAGAG+TGG | 0.678445 | 4.2:-19906687 | None:intergenic |
| TGATGGACGACATAAAGGCA+AGG | 0.683011 | 4.2:-19903018 | None:intergenic |
| CACCATGTAGATCTGCACCT+AGG | 0.706017 | 4.2:-19904809 | None:intergenic |
| GGATCATTAGAAGTAGAGGG+TGG | 0.734876 | 4.2:-19902993 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAAAAAATCAAAGTATT+TGG | - | chr4.2:19906612-19906631 | None:intergenic | 10.0% |
| !!! | TTGATAATTAATGAATTATA+AGG | + | chr4.2:19905833-19905852 | MS.gene90225:intron | 10.0% |
| !! | AAAAGAAAAGAAAAACAAAA+GGG | + | chr4.2:19902893-19902912 | MS.gene90225:CDS | 15.0% |
| !! | GAGTAAAAAAAAAAATCAAT+AGG | - | chr4.2:19906276-19906295 | None:intergenic | 15.0% |
| !! | TAAAAGAAAAGAAAAACAAA+AGG | + | chr4.2:19902892-19902911 | MS.gene90225:CDS | 15.0% |
| !!! | AAGAATTTTGAAAAGAAAAT+AGG | - | chr4.2:19906380-19906399 | None:intergenic | 15.0% |
| !!! | AATATTTGTATTTGTTTTGA+AGG | - | chr4.2:19905501-19905520 | None:intergenic | 15.0% |
| !!! | TTTGCTTATGATTATTTTTA+AGG | + | chr4.2:19903396-19903415 | MS.gene90225:intron | 15.0% |
| !!! | TTTTTTATTTCCTTTTCTTA+GGG | + | chr4.2:19903668-19903687 | MS.gene90225:intron | 15.0% |
| !! | AAAATTGAATTACCTTTGTT+GGG | - | chr4.2:19903053-19903072 | None:intergenic | 20.0% |
| !! | AATATTTCATATGCATAGAA+AGG | + | chr4.2:19905015-19905034 | MS.gene90225:intron | 20.0% |
| !! | AGTCATTCTTATAAACAATA+TGG | + | chr4.2:19906120-19906139 | MS.gene90225:intron | 20.0% |
| !! | ATAATTCCAAAAAGTCAATA+TGG | + | chr4.2:19903968-19903987 | MS.gene90225:intron | 20.0% |
| !! | ATGAAACAACATAAAAAACA+TGG | + | chr4.2:19904299-19904318 | MS.gene90225:CDS | 20.0% |
| !! | ATTTGTAACTTCAATTTATG+TGG | + | chr4.2:19903812-19903831 | MS.gene90225:intron | 20.0% |
| !! | TAAAATTGAATTACCTTTGT+TGG | - | chr4.2:19903054-19903073 | None:intergenic | 20.0% |
| !! | TTTGTAACTTCAATTTATGT+GGG | + | chr4.2:19903813-19903832 | MS.gene90225:intron | 20.0% |
| !!! | AAAGCTCTAGATAAATAAAA+TGG | - | chr4.2:19904916-19904935 | None:intergenic | 20.0% |
| !!! | ATGTTTTTTATGTTGTTTCA+TGG | - | chr4.2:19904300-19904319 | None:intergenic | 20.0% |
| !!! | ATTCTATTTTAAGTAGTGAA+AGG | - | chr4.2:19905700-19905719 | None:intergenic | 20.0% |
| !!! | ATTTGCTACATATAATTGTA+CGG | + | chr4.2:19906216-19906235 | MS.gene90225:intron | 20.0% |
| !!! | CTCTATTTTTGTTTTGTTTT+TGG | + | chr4.2:19904855-19904874 | MS.gene90225:intron | 20.0% |
| !!! | CTTTTTTATTTCCTTTTCTT+AGG | + | chr4.2:19903667-19903686 | MS.gene90225:intron | 20.0% |
| !!! | TACATTTTATGGAAGTATTT+TGG | + | chr4.2:19904374-19904393 | MS.gene90225:intron | 20.0% |
| !!! | TCATAATTTTCTTTTCTTTC+AGG | - | chr4.2:19902938-19902957 | None:intergenic | 20.0% |
| !!! | TTTATTTATCTAGAGCTTTT+TGG | + | chr4.2:19904917-19904936 | MS.gene90225:intron | 20.0% |
| !!! | TTTCATTTTCTTAGTAAAAG+AGG | - | chr4.2:19906403-19906422 | None:intergenic | 20.0% |
| !!! | TTTTGATCTAACTAAAACTT+TGG | - | chr4.2:19906356-19906375 | None:intergenic | 20.0% |
| ! | AAAAAAAAATCCCAAGTGTA+AGG | - | chr4.2:19905290-19905309 | None:intergenic | 25.0% |
| ! | AAAACTTCAACTTAAGCAAA+TGG | - | chr4.2:19906532-19906551 | None:intergenic | 25.0% |
| ! | AAGTCAAATTAGAACAAACA+GGG | - | chr4.2:19904049-19904068 | None:intergenic | 25.0% |
| ! | ACAATTATATGTAGCAAATC+TGG | - | chr4.2:19906215-19906234 | None:intergenic | 25.0% |
| ! | ACATAAAAAACATGGATCAA+TGG | + | chr4.2:19904307-19904326 | MS.gene90225:CDS | 25.0% |
| ! | AGATAAACTAGATTCAAGAA+AGG | + | chr4.2:19906700-19906719 | MS.gene90225:CDS | 25.0% |
| ! | ATTTAAATGAGAAACATTCC+CGG | - | chr4.2:19905222-19905241 | None:intergenic | 25.0% |
| ! | GCTTATATGTTTGAATGTAA+AGG | + | chr4.2:19905997-19906016 | MS.gene90225:intron | 25.0% |
| ! | TAACTAGCAGACAATTATTT+AGG | - | chr4.2:19905537-19905556 | None:intergenic | 25.0% |
| ! | TAAGTCAAATTAGAACAAAC+AGG | - | chr4.2:19904050-19904069 | None:intergenic | 25.0% |
| !! | ACTATGCTGAATTTTCAAAA+CGG | - | chr4.2:19905870-19905889 | None:intergenic | 25.0% |
| !! | CAACTCTTTTCTAAATTCAA+AGG | - | chr4.2:19905465-19905484 | None:intergenic | 25.0% |
| !! | GAACTAATGTTGAATGTTTT+AGG | + | chr4.2:19905321-19905340 | MS.gene90225:intron | 25.0% |
| !! | GTAAAAAAAGTACATGTATG+TGG | + | chr4.2:19903356-19903375 | MS.gene90225:intron | 25.0% |
| !! | GTCTCTAAACTTACATTTTA+TGG | + | chr4.2:19904363-19904382 | MS.gene90225:intron | 25.0% |
| !! | TACTTATATTTAAAGCCTGA+TGG | - | chr4.2:19903339-19903358 | None:intergenic | 25.0% |
| !! | TTTTCATTTCGTCTTTCATT+GGG | + | chr4.2:19904444-19904463 | MS.gene90225:intron | 25.0% |
| !! | TTTTTCATTTCGTCTTTCAT+TGG | + | chr4.2:19904443-19904462 | MS.gene90225:intron | 25.0% |
| !!! | CTTATGATTATTTTTAAGGC+TGG | + | chr4.2:19903400-19903419 | MS.gene90225:intron | 25.0% |
| !!! | GAGTTCTCACTTTTTATTTA+GGG | + | chr4.2:19906321-19906340 | MS.gene90225:intron | 25.0% |
| !!! | TGAGTTCTCACTTTTTATTT+AGG | + | chr4.2:19906320-19906339 | MS.gene90225:intron | 25.0% |
| !!! | TTCTACATTTTGATTTCTGA+AGG | + | chr4.2:19903772-19903791 | MS.gene90225:intron | 25.0% |
| AAAATCTGCTCACAACTAAT+GGG | + | chr4.2:19903914-19903933 | MS.gene90225:CDS | 30.0% | |
| AAACTAGATTCAAGAAAGGT+TGG | + | chr4.2:19906704-19906723 | MS.gene90225:CDS | 30.0% | |
| AACTTACTTATGGAACTCTT+TGG | - | chr4.2:19904339-19904358 | None:intergenic | 30.0% | |
| AAGAAGTTCATGCAATATTC+CGG | - | chr4.2:19904117-19904136 | None:intergenic | 30.0% | |
| ACTGAAGCTAATAAATTCCA+AGG | + | chr4.2:19905670-19905689 | MS.gene90225:CDS | 30.0% | |
| ACTTACTTATGGAACTCTTT+GGG | - | chr4.2:19904338-19904357 | None:intergenic | 30.0% | |
| ACTTATTCAGTATGACACTT+GGG | + | chr4.2:19903103-19903122 | MS.gene90225:intron | 30.0% | |
| ATATGGCTGAGATTCTTATT+TGG | + | chr4.2:19906137-19906156 | MS.gene90225:intron | 30.0% | |
| ATGTGACACTTGCATTATTA+TGG | + | chr4.2:19906459-19906478 | MS.gene90225:intron | 30.0% | |
| ATTTACAGTCACAGAAAGTT+GGG | - | chr4.2:19903893-19903912 | None:intergenic | 30.0% | |
| CATTAATACTTGAGAAACAC+AGG | - | chr4.2:19905751-19905770 | None:intergenic | 30.0% | |
| CTTGCACAAAATTATCAAGA+AGG | - | chr4.2:19904205-19904224 | None:intergenic | 30.0% | |
| GATATTCTTAGATTCATGCT+AGG | + | chr4.2:19904466-19904485 | MS.gene90225:intron | 30.0% | |
| TAAATACTTGCATGACTGTT+TGG | - | chr4.2:19903571-19903590 | None:intergenic | 30.0% | |
| TAATCTGTAGAGAAAGAAGA+TGG | + | chr4.2:19903856-19903875 | MS.gene90225:intron | 30.0% | |
| TACTAAAGATATAACCTGAC+AGG | - | chr4.2:19906177-19906196 | None:intergenic | 30.0% | |
| TTATATGTAGCAAATCTGGT+TGG | - | chr4.2:19906211-19906230 | None:intergenic | 30.0% | |
| TTATTCCTGGAACAATAAAC+AGG | - | chr4.2:19904771-19904790 | None:intergenic | 30.0% | |
| TTGCATTATTATGGCTGAAT+TGG | + | chr4.2:19906468-19906487 | MS.gene90225:intron | 30.0% | |
| TTGGATGTTAATTATTCCCA+CGG | + | chr4.2:19904971-19904990 | MS.gene90225:intron | 30.0% | |
| TTGTTCCAGGAATAATCAAT+TGG | + | chr4.2:19904776-19904795 | MS.gene90225:intron | 30.0% | |
| ! | GAACTATTTTACGCAATCAT+TGG | + | chr4.2:19905116-19905135 | MS.gene90225:intron | 30.0% |
| ! | GAGAAGATGTATTTTATGAC+AGG | + | chr4.2:19906043-19906062 | MS.gene90225:intron | 30.0% |
| ! | GAGCTTTTTGGATAATTACA+AGG | + | chr4.2:19904929-19904948 | MS.gene90225:intron | 30.0% |
| ! | TAAACCCAAATGCATTTTTC+AGG | + | chr4.2:19903601-19903620 | MS.gene90225:intron | 30.0% |
| ! | TGTAAACTAACCCATTTTAC+TGG | + | chr4.2:19905598-19905617 | MS.gene90225:CDS | 30.0% |
| ! | TGTATGCTTTTCTTATACCA+GGG | + | chr4.2:19905796-19905815 | MS.gene90225:intron | 30.0% |
| ! | TTCATTCAAAACGTTCTAAG+AGG | + | chr4.2:19904267-19904286 | MS.gene90225:CDS | 30.0% |
| ! | TTCCTTTTCTTAGGGAATTT+CGG | + | chr4.2:19903676-19903695 | MS.gene90225:intron | 30.0% |
| ! | TTGACTCGAAAGTCATTAAT+AGG | + | chr4.2:19906431-19906450 | MS.gene90225:intron | 30.0% |
| ! | TTTCTAAGAACACCAAAAGT+AGG | - | chr4.2:19905085-19905104 | None:intergenic | 30.0% |
| !! | AAGGACAGTTATTTTGTCAT+TGG | + | chr4.2:19904948-19904967 | MS.gene90225:intron | 30.0% |
| !! | ACAGTTATTTTGTCATTGGT+TGG | + | chr4.2:19904952-19904971 | MS.gene90225:intron | 30.0% |
| !! | ACTCAGCTGTTTCTAATTTA+CGG | + | chr4.2:19906292-19906311 | MS.gene90225:intron | 30.0% |
| !! | CTTCTTGATAATTTTGTGCA+AGG | + | chr4.2:19904203-19904222 | MS.gene90225:CDS | 30.0% |
| !! | TTTTGATGACTTATCAGTTC+TGG | + | chr4.2:19906548-19906567 | MS.gene90225:intron | 30.0% |
| !!! | ATGATTATTTTTAAGGCTGG+AGG | + | chr4.2:19903403-19903422 | MS.gene90225:intron | 30.0% |
| !!! | CTACATGGTGCTATTATTTT+AGG | + | chr4.2:19904822-19904841 | MS.gene90225:CDS | 30.0% |
| !!! | GATTGACCATATTGACTTTT+TGG | - | chr4.2:19903977-19903996 | None:intergenic | 30.0% |
| !!! | GTGTTCAGTTGCTTTTAAAA+TGG | + | chr4.2:19905950-19905969 | MS.gene90225:intron | 30.0% |
| !!! | TGATTATTTTTAAGGCTGGA+GGG | + | chr4.2:19903404-19903423 | MS.gene90225:intron | 30.0% |
| !!! | TGCTTTTAAAATGGAACTTG+TGG | + | chr4.2:19905959-19905978 | MS.gene90225:intron | 30.0% |
| !!! | TTGGCTTATTTTTTAGCTCA+TGG | + | chr4.2:19903137-19903156 | MS.gene90225:intron | 30.0% |
| !!! | TTTTAGAGTTCAGACTTCAA+AGG | - | chr4.2:19904001-19904020 | None:intergenic | 30.0% |
| AAATCTGCTCACAACTAATG+GGG | + | chr4.2:19903915-19903934 | MS.gene90225:CDS | 35.0% | |
| AAGTAGTGAAAGGATTACCT+TGG | - | chr4.2:19905690-19905709 | None:intergenic | 35.0% | |
| ACAAACCTGTTTATTGTTCC+AGG | + | chr4.2:19904763-19904782 | MS.gene90225:intron | 35.0% | |
| ACAAATACAGAACCCTTCTT+CGG | - | chr4.2:19906644-19906663 | None:intergenic | 35.0% | |
| AGAGACCTTGAACTTACTTA+TGG | - | chr4.2:19904349-19904368 | None:intergenic | 35.0% | |
| ATAAAGACATAAGCATCCGT+GGG | - | chr4.2:19904990-19905009 | None:intergenic | 35.0% | |
| ATTGCATGAACTTCTTCAGA+AGG | + | chr4.2:19904121-19904140 | MS.gene90225:CDS | 35.0% | |
| CAAAACTAAGCCAATCCAAA+CGG | + | chr4.2:19903304-19903323 | MS.gene90225:intron | 35.0% | |
| CACTTATTCAGTATGACACT+TGG | + | chr4.2:19903102-19903121 | MS.gene90225:intron | 35.0% | |
| CATTTACAGTCACAGAAAGT+TGG | - | chr4.2:19903894-19903913 | None:intergenic | 35.0% | |
| CTAGCAGACAATTATTTAGG+AGG | - | chr4.2:19905534-19905553 | None:intergenic | 35.0% | |
| CTAGCCTGAAAAATGCATTT+GGG | - | chr4.2:19903608-19903627 | None:intergenic | 35.0% | |
| GAAAATCTGCTCACAACTAA+TGG | + | chr4.2:19903913-19903932 | MS.gene90225:CDS | 35.0% | |
| GACAATTATTTAGGAGGTAG+AGG | - | chr4.2:19905528-19905547 | None:intergenic | 35.0% | |
| GAGTTCCATAAGTAAGTTCA+AGG | + | chr4.2:19904341-19904360 | MS.gene90225:intron | 35.0% | |
| GGGATATAGTAGTAATGACA+AGG | - | chr4.2:19904401-19904420 | None:intergenic | 35.0% | |
| TAAAATGGAACTTGTGGACA+TGG | + | chr4.2:19905965-19905984 | MS.gene90225:intron | 35.0% | |
| TAGTAAGATGAGCTTCTGAT+TGG | + | chr4.2:19905170-19905189 | MS.gene90225:intron | 35.0% | |
| TATACAATAACAGTACCCAG+TGG | - | chr4.2:19904661-19904680 | None:intergenic | 35.0% | |
| TCTAGCCTGAAAAATGCATT+TGG | - | chr4.2:19903609-19903628 | None:intergenic | 35.0% | |
| TTCTTCATCTTCTCAGACAA+GGG | + | chr4.2:19904235-19904254 | MS.gene90225:CDS | 35.0% | |
| TTGAGCCAATTGATTATTCC+TGG | - | chr4.2:19904784-19904803 | None:intergenic | 35.0% | |
| TTGCATGAACTTCTTCAGAA+GGG | + | chr4.2:19904122-19904141 | MS.gene90225:CDS | 35.0% | |
| TTTCTTCATCTTCTCAGACA+AGG | + | chr4.2:19904234-19904253 | MS.gene90225:CDS | 35.0% | |
| ! | AAGTTGTTGCTTAAATCCAC+TGG | + | chr4.2:19904642-19904661 | MS.gene90225:CDS | 35.0% |
| ! | AGTGTAAGGAGCATGAAAAA+AGG | - | chr4.2:19905276-19905295 | None:intergenic | 35.0% |
| ! | AGTTGTTGCTTAAATCCACT+GGG | + | chr4.2:19904643-19904662 | MS.gene90225:CDS | 35.0% |
| ! | ATGCTGAATTTTCAAAACGG+AGG | - | chr4.2:19905867-19905886 | None:intergenic | 35.0% |
| ! | GATGTATTTTATGACAGGCA+TGG | + | chr4.2:19906048-19906067 | MS.gene90225:intron | 35.0% |
| ! | GGTTTAGCATTTTCTACTGT+AGG | - | chr4.2:19904895-19904914 | None:intergenic | 35.0% |
| ! | GTGTATGCTTTTCTTATACC+AGG | + | chr4.2:19905795-19905814 | MS.gene90225:intron | 35.0% |
| ! | TTAGGGAATTTCGGTCTTTT+TGG | + | chr4.2:19903685-19903704 | MS.gene90225:intron | 35.0% |
| ! | TTTAAAGCCTGATGGAACAA+TGG | - | chr4.2:19903331-19903350 | None:intergenic | 35.0% |
| ! | TTTTCATGCTCCTTACACTT+GGG | + | chr4.2:19905277-19905296 | MS.gene90225:intron | 35.0% |
| ! | TTTTTCATGCTCCTTACACT+TGG | + | chr4.2:19905276-19905295 | MS.gene90225:intron | 35.0% |
| !! | AGCTGTTTCTACATTTCAAG+AGG | + | chr4.2:19903457-19903476 | MS.gene90225:intron | 35.0% |
| !! | GCTGTTTCTACATTTCAAGA+GGG | + | chr4.2:19903458-19903477 | MS.gene90225:intron | 35.0% |
| !! | TTGTACTACAAGTTGATTGC+TGG | + | chr4.2:19906660-19906679 | MS.gene90225:CDS | 35.0% |
| AAAAAGGTTATGCATGCCAC+TGG | - | chr4.2:19905260-19905279 | None:intergenic | 40.0% | |
| AAAAGGTTATGCATGCCACT+GGG | - | chr4.2:19905259-19905278 | None:intergenic | 40.0% | |
| AAACACAGGAATAACAGCTC+TGG | - | chr4.2:19905737-19905756 | None:intergenic | 40.0% | |
| AATTGCAGTTGTTCCGAAGA+AGG | + | chr4.2:19906628-19906647 | MS.gene90225:intron | 40.0% | |
| ACACAGAATTGTGATGCTCA+AGG | - | chr4.2:19906508-19906527 | None:intergenic | 40.0% | |
| ACAGAAAGTTGGGCATATTC+TGG | - | chr4.2:19903883-19903902 | None:intergenic | 40.0% | |
| ATTGCAGTTGTTCCGAAGAA+GGG | + | chr4.2:19906629-19906648 | MS.gene90225:intron | 40.0% | |
| CAAATTTGTACAGCAAACCC+TGG | - | chr4.2:19905816-19905835 | None:intergenic | 40.0% | |
| CACTATTAGATTGTCCTGTC+AGG | + | chr4.2:19906160-19906179 | MS.gene90225:intron | 40.0% | |
| CAGTACAGTACCTTGTGAAA+TGG | - | chr4.2:19903716-19903735 | None:intergenic | 40.0% | |
| CATAAAGACATAAGCATCCG+TGG | - | chr4.2:19904991-19905010 | None:intergenic | 40.0% | |
| GACCGAAATTCCCTAAGAAA+AGG | - | chr4.2:19903681-19903700 | None:intergenic | 40.0% | |
| GACGGATCATTAGAAGTAGA+GGG | - | chr4.2:19902999-19903018 | None:intergenic | 40.0% | |
| GATGACCTAATCAGCAATCA+CGG | + | chr4.2:19904557-19904576 | MS.gene90225:intron | 40.0% | |
| TACTATATCCCTGCAGTTTG+TGG | + | chr4.2:19904410-19904429 | MS.gene90225:intron | 40.0% | |
| TAGTTTATCTCCAAGCAGAG+TGG | - | chr4.2:19906690-19906709 | None:intergenic | 40.0% | |
| TCAAGAGGGAATAAGCAATG+TGG | + | chr4.2:19903472-19903491 | MS.gene90225:intron | 40.0% | |
| TCTTTCCACATGTCATGCAT+TGG | - | chr4.2:19904615-19904634 | None:intergenic | 40.0% | |
| TGAATCAAGGAAACGTGCAA+TGG | + | chr4.2:19902833-19902852 | MS.gene90225:CDS | 40.0% | |
| TGAGTCATCTAGACAGAGTT+TGG | - | chr4.2:19905431-19905450 | None:intergenic | 40.0% | |
| TTCACAGGTTTGAGTACATG+CGG | - | chr4.2:19905060-19905079 | None:intergenic | 40.0% | |
| ! | AACCTGTGAAAGCCTACTTT+TGG | + | chr4.2:19905070-19905089 | MS.gene90225:intron | 40.0% |
| ! | ATGAACCGTGATTGCTGATT+AGG | - | chr4.2:19904565-19904584 | None:intergenic | 40.0% |
| ! | CTAACCCATTTTACTGGAAC+TGG | + | chr4.2:19905604-19905623 | MS.gene90225:CDS | 40.0% |
| ! | CTGCTTGTTACTCAAGAAAG+CGG | - | chr4.2:19906093-19906112 | None:intergenic | 40.0% |
| ! | GTGAAACTGCAGAAGCTTTT+GGG | + | chr4.2:19905641-19905660 | MS.gene90225:CDS | 40.0% |
| !! | CAGTTTTCTTCTGAAAGAGG+AGG | + | chr4.2:19904083-19904102 | MS.gene90225:intron | 40.0% |
| !! | CTGCAGTTTTCTTCTGAAAG+AGG | + | chr4.2:19904080-19904099 | MS.gene90225:intron | 40.0% |
| !!! | CACTTGGGATCTGTTTTGAT+TGG | + | chr4.2:19903118-19903137 | MS.gene90225:intron | 40.0% |
| AAACGGACCATTGTTCCATC+AGG | + | chr4.2:19903321-19903340 | MS.gene90225:intron | 45.0% | |
| ACACTCCACAACTGCATAAC+AGG | - | chr4.2:19905581-19905600 | None:intergenic | 45.0% | |
| AGAGGGAATAAGCAATGTGG+AGG | + | chr4.2:19903475-19903494 | MS.gene90225:intron | 45.0% | |
| ATACCTAGGTCTTCTTCTCC+GGG | + | chr4.2:19905201-19905220 | MS.gene90225:intron | 45.0% | |
| ATCAAGGAAACGTGCAATGG+AGG | + | chr4.2:19902836-19902855 | MS.gene90225:CDS | 45.0% | |
| ATCCACCTGTTATGCAGTTG+TGG | + | chr4.2:19905573-19905592 | MS.gene90225:intron | 45.0% | |
| CACCAAAAGTAGGCTTTCAC+AGG | - | chr4.2:19905075-19905094 | None:intergenic | 45.0% | |
| CATACCTAGGTCTTCTTCTC+CGG | + | chr4.2:19905200-19905219 | MS.gene90225:intron | 45.0% | |
| GAAAGAGGAGGTTCAGTTTC+CGG | + | chr4.2:19904095-19904114 | MS.gene90225:CDS | 45.0% | |
| GAACAATGGTCCGTTTGGAT+TGG | - | chr4.2:19903317-19903336 | None:intergenic | 45.0% | |
| GCCACCAGTTCCAGTAAAAT+GGG | - | chr4.2:19905611-19905630 | None:intergenic | 45.0% | |
| GCCTTTATGTCGTCCATCAT+CGG | + | chr4.2:19903022-19903041 | MS.gene90225:CDS | 45.0% | |
| GGACGGATCATTAGAAGTAG+AGG | - | chr4.2:19903000-19903019 | None:intergenic | 45.0% | |
| GGATCATTAGAAGTAGAGGG+TGG | - | chr4.2:19902996-19903015 | None:intergenic | 45.0% | |
| TCAAGCCAATGCATGACATG+TGG | + | chr4.2:19904607-19904626 | MS.gene90225:CDS | 45.0% | |
| TCATCGGATACACCCAACAA+AGG | + | chr4.2:19903038-19903057 | MS.gene90225:CDS | 45.0% | |
| TCATTAGAAGTAGAGGGTGG+TGG | - | chr4.2:19902993-19903012 | None:intergenic | 45.0% | |
| TGATGGAACAATGGTCCGTT+TGG | - | chr4.2:19903322-19903341 | None:intergenic | 45.0% | |
| TGCCACCAGTTCCAGTAAAA+TGG | - | chr4.2:19905612-19905631 | None:intergenic | 45.0% | |
| TTGTTGGGTGTATCCGATGA+TGG | - | chr4.2:19903038-19903057 | None:intergenic | 45.0% | |
| ! | ACCCATTTTACTGGAACTGG+TGG | + | chr4.2:19905607-19905626 | MS.gene90225:CDS | 45.0% |
| ! | CAATTGGCTCAATGTCTCCT+AGG | + | chr4.2:19904792-19904811 | MS.gene90225:CDS | 45.0% |
| ! | CGTGAAACTGCAGAAGCTTT+TGG | + | chr4.2:19905640-19905659 | MS.gene90225:CDS | 45.0% |
| ! | GATGAGCTTCTGATTGGTTG+AGG | + | chr4.2:19905176-19905195 | MS.gene90225:intron | 45.0% |
| ! | GATTGGTTGAGGTCATACCT+AGG | + | chr4.2:19905187-19905206 | MS.gene90225:intron | 45.0% |
| ! | GCAGCACAAAAGTACATGCA+AGG | + | chr4.2:19904149-19904168 | MS.gene90225:CDS | 45.0% |
| ! | TCCTTCCTTTTCATTCCCAG+TGG | + | chr4.2:19905241-19905260 | MS.gene90225:intron | 45.0% |
| ! | TGATGGACGACATAAAGGCA+AGG | - | chr4.2:19903021-19903040 | None:intergenic | 45.0% |
| !! | TCCGATGATGGACGACATAA+AGG | - | chr4.2:19903026-19903045 | None:intergenic | 45.0% |
| !! | TTTGGTCGTGCCATTTCACA+AGG | + | chr4.2:19903703-19903722 | MS.gene90225:CDS | 45.0% |
| ATTCCCGGAGAAGAAGACCT+AGG | - | chr4.2:19905207-19905226 | None:intergenic | 50.0% | |
| CACCATGTAGATCTGCACCT+AGG | - | chr4.2:19904812-19904831 | None:intergenic | 50.0% | |
| CTCCACAACTGCATAACAGG+TGG | - | chr4.2:19905578-19905597 | None:intergenic | 50.0% | |
| CTCCTAGGTGCAGATCTACA+TGG | + | chr4.2:19904807-19904826 | MS.gene90225:CDS | 50.0% | |
| GAAACGTGCAATGGAGGCTT+TGG | + | chr4.2:19902842-19902861 | MS.gene90225:CDS | 50.0% | |
| GCATGCCACTGGGAATGAAA+AGG | - | chr4.2:19905249-19905268 | None:intergenic | 50.0% | |
| GCCACTGGGAATGAAAAGGA+AGG | - | chr4.2:19905245-19905264 | None:intergenic | 50.0% | |
| GGACGACATAAAGGCAAGGA+CGG | - | chr4.2:19903017-19903036 | None:intergenic | 50.0% | |
| TCTCACTGCCACAAACTGCA+GGG | - | chr4.2:19904421-19904440 | None:intergenic | 50.0% | |
| TCTGCTCACAACTAATGGGG+AGG | + | chr4.2:19903918-19903937 | MS.gene90225:CDS | 50.0% | |
| TTCTCACTGCCACAAACTGC+AGG | - | chr4.2:19904422-19904441 | None:intergenic | 50.0% | |
| TGCTGGAAAGCCACTCTGCT+TGG | + | chr4.2:19906677-19906696 | MS.gene90225:CDS | 55.0% | |
| !! | GAAGTAGAGGGTGGTGGAGT+AGG | - | chr4.2:19902987-19903006 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 19902825 | 19906733 | 19902825 | ID=MS.gene90225 |
| chr4.2 | mRNA | 19902825 | 19906733 | 19902825 | ID=MS.gene90225.t1;Parent=MS.gene90225 |
| chr4.2 | exon | 19902825 | 19903059 | 19902825 | ID=MS.gene90225.t1.exon1;Parent=MS.gene90225.t1 |
| chr4.2 | CDS | 19902825 | 19903059 | 19902825 | ID=cds.MS.gene90225.t1;Parent=MS.gene90225.t1 |
| chr4.2 | exon | 19903689 | 19903724 | 19903689 | ID=MS.gene90225.t1.exon2;Parent=MS.gene90225.t1 |
| chr4.2 | CDS | 19903689 | 19903724 | 19903689 | ID=cds.MS.gene90225.t1;Parent=MS.gene90225.t1 |
| chr4.2 | exon | 19903866 | 19903939 | 19903866 | ID=MS.gene90225.t1.exon3;Parent=MS.gene90225.t1 |
| chr4.2 | CDS | 19903866 | 19903939 | 19903866 | ID=cds.MS.gene90225.t1;Parent=MS.gene90225.t1 |
| chr4.2 | exon | 19904086 | 19904351 | 19904086 | ID=MS.gene90225.t1.exon4;Parent=MS.gene90225.t1 |
| chr4.2 | CDS | 19904086 | 19904351 | 19904086 | ID=cds.MS.gene90225.t1;Parent=MS.gene90225.t1 |
| chr4.2 | exon | 19904596 | 19904664 | 19904596 | ID=MS.gene90225.t1.exon5;Parent=MS.gene90225.t1 |
| chr4.2 | CDS | 19904596 | 19904664 | 19904596 | ID=cds.MS.gene90225.t1;Parent=MS.gene90225.t1 |
| chr4.2 | exon | 19904785 | 19904843 | 19904785 | ID=MS.gene90225.t1.exon6;Parent=MS.gene90225.t1 |
| chr4.2 | CDS | 19904785 | 19904843 | 19904785 | ID=cds.MS.gene90225.t1;Parent=MS.gene90225.t1 |
| chr4.2 | exon | 19905590 | 19905691 | 19905590 | ID=MS.gene90225.t1.exon7;Parent=MS.gene90225.t1 |
| chr4.2 | CDS | 19905590 | 19905691 | 19905590 | ID=cds.MS.gene90225.t1;Parent=MS.gene90225.t1 |
| chr4.2 | exon | 19906636 | 19906733 | 19906636 | ID=MS.gene90225.t1.exon8;Parent=MS.gene90225.t1 |
| chr4.2 | CDS | 19906636 | 19906733 | 19906636 | ID=cds.MS.gene90225.t1;Parent=MS.gene90225.t1 |
| Gene Sequence |
| Protein sequence |
