Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90601.t1 | XP_024640437.1 | 98.9 | 443 | 5 | 0 | 1 | 443 | 1 | 443 | 1.50E-246 | 861.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90601.t1 | Q8LJW3 | 74.9 | 454 | 100 | 5 | 1 | 443 | 1 | 451 | 9.7e-186 | 651.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90601.t1 | G7JY63 | 98.9 | 443 | 5 | 0 | 1 | 443 | 9 | 451 | 1.1e-246 | 861.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene90601 | MS.gene88063 | PPI |
| MS.gene90601 | MS.gene001931 | PPI |
| MS.gene90601 | MS.gene86660 | PPI |
| MS.gene90601 | MS.gene99846 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90601.t1 | MTR_5g047260 | 98.871 | 443 | 5 | 0 | 1 | 443 | 9 | 451 | 0.0 | 905 |
| MS.gene90601.t1 | MTR_5g047260 | 94.618 | 353 | 18 | 1 | 1 | 353 | 9 | 360 | 0.0 | 687 |
| MS.gene90601.t1 | MTR_5g047260 | 98.339 | 301 | 5 | 0 | 1 | 301 | 9 | 309 | 0.0 | 616 |
| MS.gene90601.t1 | MTR_7g028050 | 59.955 | 442 | 170 | 4 | 9 | 443 | 1 | 442 | 0.0 | 541 |
| MS.gene90601.t1 | MTR_7g022470 | 57.871 | 451 | 177 | 6 | 3 | 443 | 4 | 451 | 5.04e-175 | 498 |
| MS.gene90601.t1 | MTR_4g101950 | 52.715 | 442 | 192 | 4 | 11 | 443 | 8 | 441 | 9.50e-154 | 443 |
| MS.gene90601.t1 | MTR_3g088885 | 54.940 | 415 | 174 | 5 | 8 | 410 | 8 | 421 | 2.45e-153 | 442 |
| MS.gene90601.t1 | MTR_5g011580 | 51.357 | 442 | 198 | 4 | 11 | 443 | 8 | 441 | 1.21e-147 | 427 |
| MS.gene90601.t1 | MTR_1g029520 | 52.347 | 426 | 182 | 7 | 25 | 429 | 254 | 679 | 3.20e-141 | 420 |
| MS.gene90601.t1 | MTR_7g028050 | 57.738 | 336 | 136 | 3 | 114 | 443 | 4 | 339 | 1.11e-136 | 396 |
| MS.gene90601.t1 | MTR_5g015170 | 46.318 | 421 | 199 | 7 | 9 | 403 | 9 | 428 | 8.45e-120 | 358 |
| MS.gene90601.t1 | MTR_4g097380 | 43.287 | 432 | 215 | 8 | 3 | 410 | 23 | 448 | 8.34e-113 | 340 |
| MS.gene90601.t1 | MTR_1g012740 | 37.607 | 117 | 66 | 2 | 249 | 364 | 34 | 144 | 1.88e-19 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90601.t1 | AT1G69040 | 74.890 | 454 | 100 | 5 | 1 | 443 | 5 | 455 | 0.0 | 680 |
| MS.gene90601.t1 | AT1G69040 | 74.890 | 454 | 100 | 5 | 1 | 443 | 1 | 451 | 0.0 | 680 |
| MS.gene90601.t1 | AT2G03730 | 69.536 | 453 | 121 | 7 | 4 | 441 | 6 | 456 | 0.0 | 616 |
| MS.gene90601.t1 | AT2G03730 | 69.536 | 453 | 121 | 7 | 4 | 441 | 6 | 456 | 0.0 | 616 |
| MS.gene90601.t1 | AT3G01990 | 65.140 | 393 | 133 | 3 | 10 | 400 | 17 | 407 | 0.0 | 515 |
| MS.gene90601.t1 | AT3G01990 | 65.140 | 393 | 133 | 3 | 10 | 400 | 17 | 407 | 0.0 | 515 |
| MS.gene90601.t1 | AT3G01990 | 65.140 | 393 | 133 | 3 | 10 | 400 | 17 | 407 | 0.0 | 514 |
| MS.gene90601.t1 | AT3G01990 | 65.140 | 393 | 133 | 3 | 10 | 400 | 3 | 393 | 0.0 | 514 |
| MS.gene90601.t1 | AT3G01990 | 65.140 | 393 | 133 | 3 | 10 | 400 | 3 | 393 | 0.0 | 514 |
| MS.gene90601.t1 | AT3G01990 | 65.140 | 393 | 133 | 3 | 10 | 400 | 3 | 393 | 0.0 | 513 |
| MS.gene90601.t1 | AT1G76990 | 56.650 | 406 | 167 | 3 | 8 | 404 | 8 | 413 | 7.43e-157 | 451 |
| MS.gene90601.t1 | AT1G76990 | 56.650 | 406 | 167 | 3 | 8 | 404 | 8 | 413 | 7.43e-157 | 451 |
| MS.gene90601.t1 | AT1G76990 | 56.650 | 406 | 167 | 3 | 8 | 404 | 8 | 413 | 7.43e-157 | 451 |
| MS.gene90601.t1 | AT1G76990 | 56.650 | 406 | 167 | 3 | 8 | 404 | 8 | 413 | 7.43e-157 | 451 |
| MS.gene90601.t1 | AT1G76990 | 56.650 | 406 | 167 | 3 | 8 | 404 | 8 | 413 | 7.43e-157 | 451 |
| MS.gene90601.t1 | AT3G01990 | 64.545 | 330 | 113 | 3 | 10 | 337 | 17 | 344 | 1.56e-149 | 429 |
| MS.gene90601.t1 | AT3G01990 | 65.538 | 325 | 108 | 3 | 10 | 332 | 17 | 339 | 1.77e-149 | 429 |
| MS.gene90601.t1 | AT3G01990 | 64.545 | 330 | 113 | 3 | 10 | 337 | 3 | 330 | 2.97e-149 | 428 |
| MS.gene90601.t1 | AT1G12420 | 52.262 | 442 | 194 | 7 | 11 | 443 | 8 | 441 | 2.75e-146 | 424 |
| MS.gene90601.t1 | AT4G22780 | 49.336 | 452 | 198 | 8 | 11 | 442 | 8 | 448 | 6.16e-137 | 400 |
| MS.gene90601.t1 | AT4G22780 | 30.233 | 172 | 100 | 3 | 5 | 171 | 214 | 370 | 2.30e-12 | 68.9 |
| MS.gene90601.t1 | AT4G22780 | 49.336 | 452 | 198 | 8 | 11 | 442 | 8 | 448 | 6.16e-137 | 400 |
| MS.gene90601.t1 | AT4G22780 | 30.233 | 172 | 100 | 3 | 5 | 171 | 214 | 370 | 2.30e-12 | 68.9 |
| MS.gene90601.t1 | AT3G01990 | 64.828 | 290 | 98 | 3 | 10 | 297 | 17 | 304 | 2.17e-127 | 372 |
| MS.gene90601.t1 | AT3G01990 | 64.828 | 290 | 98 | 3 | 10 | 297 | 3 | 290 | 4.01e-127 | 370 |
| MS.gene90601.t1 | AT5G25320 | 43.573 | 459 | 215 | 8 | 8 | 422 | 8 | 466 | 8.64e-127 | 377 |
| MS.gene90601.t1 | AT5G25320 | 43.794 | 427 | 198 | 6 | 38 | 422 | 1 | 427 | 1.12e-120 | 360 |
| MS.gene90601.t1 | AT1G12420 | 49.072 | 377 | 175 | 7 | 76 | 443 | 1 | 369 | 3.41e-111 | 332 |
| MS.gene90601.t1 | AT5G65890 | 40.381 | 473 | 217 | 9 | 1 | 423 | 2 | 459 | 4.03e-111 | 336 |
| MS.gene90601.t1 | AT5G65890 | 40.381 | 473 | 217 | 9 | 1 | 423 | 2 | 459 | 4.03e-111 | 336 |
| MS.gene90601.t1 | AT5G25320 | 42.623 | 366 | 169 | 7 | 8 | 332 | 8 | 373 | 2.82e-96 | 294 |
| MS.gene90601.t1 | AT5G65890 | 39.100 | 422 | 192 | 9 | 52 | 423 | 1 | 407 | 1.81e-91 | 283 |
| MS.gene90601.t1 | AT5G65890 | 39.100 | 422 | 192 | 9 | 52 | 423 | 1 | 407 | 1.81e-91 | 283 |
| MS.gene90601.t1 | AT5G65890 | 39.169 | 337 | 162 | 7 | 122 | 423 | 17 | 345 | 2.78e-70 | 227 |
Find 85 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTAACAGATGAAGTCATTT+TGG | 0.193644 | 5.1:-35264590 | MS.gene90601:CDS |
| CTCCAAATGCCACTGTTATA+AGG | 0.222940 | 5.1:-35264986 | MS.gene90601:CDS |
| TTCTATGTTCGTGGAGCTTC+TGG | 0.238146 | 5.1:-35262871 | MS.gene90601:CDS |
| CTGTTACCTTGTTTCCATCT+TGG | 0.252705 | 5.1:+35264605 | None:intergenic |
| TTCAGGGTTGTAATTGATAA+TGG | 0.278263 | 5.1:-35265014 | MS.gene90601:intron |
| CCACACAGCAATAGAGCTTA+TGG | 0.298609 | 5.1:-35264388 | MS.gene90601:CDS |
| TTCTGATGGTGGATGGTTCA+TGG | 0.305458 | 5.1:-35264749 | MS.gene90601:CDS |
| CATTCACTATGTTGCATTTG+AGG | 0.340042 | 5.1:+35264316 | None:intergenic |
| GTTACCAATTGTTTGCCTAA+TGG | 0.351693 | 5.1:+35262819 | None:intergenic |
| ATCAGATGATGTTTGATGAT+AGG | 0.358215 | 5.1:-35264095 | MS.gene90601:CDS |
| TATTACATCAAGCATATAGA+TGG | 0.358620 | 5.1:-35263717 | MS.gene90601:CDS |
| GTAGTTGGAAAGCAGGATTC+AGG | 0.372324 | 5.1:+35264444 | None:intergenic |
| CTCACTTCTGAAAGCAATCC+TGG | 0.377119 | 5.1:+35264354 | None:intergenic |
| CTAAAGATTGATGATCTTGT+AGG | 0.380245 | 5.1:+35262748 | None:intergenic |
| ACCCTTATAACAGTGGCATT+TGG | 0.386153 | 5.1:+35264984 | None:intergenic |
| TCCAAATGCCACTGTTATAA+GGG | 0.388624 | 5.1:-35264985 | MS.gene90601:intron |
| TGAGGGGCCACAAGCATATC+AGG | 0.390122 | 5.1:-35263884 | MS.gene90601:intron |
| TACGTGTTACGTTCGATAAT+AGG | 0.395501 | 5.1:+35262965 | None:intergenic |
| TATTTATGAATTTAGTCTCT+TGG | 0.398018 | 5.1:-35264468 | MS.gene90601:intron |
| CTGTTGTTACTATTGAATGT+AGG | 0.402093 | 5.1:-35263987 | MS.gene90601:CDS |
| TCAGATGATGTTTGATGATA+GGG | 0.410378 | 5.1:-35264094 | MS.gene90601:CDS |
| CTAAGACAATTGAATCCATT+AGG | 0.420076 | 5.1:-35262834 | MS.gene90601:CDS |
| GTTAACACTTTCTATGTTCG+TGG | 0.421080 | 5.1:-35262880 | MS.gene90601:CDS |
| CAAATGTTGATGTTGTTAAC+TGG | 0.426344 | 5.1:-35264026 | MS.gene90601:CDS |
| ACATAGTGAATGCGGAGGTT+TGG | 0.430916 | 5.1:-35264305 | MS.gene90601:CDS |
| ACAAGATCATCAATCTTTAG+TGG | 0.431730 | 5.1:-35262745 | MS.gene90601:CDS |
| TGTTGTTACTATTGAATGTA+GGG | 0.432062 | 5.1:-35263986 | MS.gene90601:CDS |
| ATGTGCTTGGTGGTGGAAAC+AGG | 0.437113 | 5.1:-35264176 | MS.gene90601:CDS |
| GAATCCATTAGGCAAACAAT+TGG | 0.439461 | 5.1:-35262823 | MS.gene90601:CDS |
| CTGTGTAATGTGCTTGGTGG+TGG | 0.460185 | 5.1:-35264183 | MS.gene90601:CDS |
| AACACAATACTCAAAGTAAA+GGG | 0.460429 | 5.1:-35262799 | MS.gene90601:CDS |
| ACATTTCTTCTGATGGTGGA+TGG | 0.466352 | 5.1:-35264756 | MS.gene90601:CDS |
| CCAACAGATCTCATAGTAGT+TGG | 0.479948 | 5.1:+35264429 | None:intergenic |
| CATGTGACCGACGAGGAAAC+AGG | 0.483221 | 5.1:-35264252 | MS.gene90601:CDS |
| ATTCGACGCATACTGATAGA+AGG | 0.487974 | 5.1:-35264122 | MS.gene90601:CDS |
| TAACACAATACTCAAAGTAA+AGG | 0.491332 | 5.1:-35262800 | MS.gene90601:CDS |
| TCTAAATCTCATCATAACTA+AGG | 0.492141 | 5.1:-35264782 | MS.gene90601:CDS |
| TTTGACAGATATGCAATATG+TGG | 0.492908 | 5.1:-35263929 | MS.gene90601:CDS |
| ACAGTGTCGAAAACAAGCTT+TGG | 0.494289 | 5.1:+35263958 | None:intergenic |
| TGTTGTTAACTGGTCTGATA+AGG | 0.497227 | 5.1:-35264016 | MS.gene90601:CDS |
| CAGTTAACAACATCAACATT+TGG | 0.498099 | 5.1:+35264027 | None:intergenic |
| TAGAGCTTATGGGAAGTGAT+AGG | 0.500002 | 5.1:-35264377 | MS.gene90601:CDS |
| AGAATAGCCTCACAGTTACA+AGG | 0.500098 | 5.1:-35262933 | MS.gene90601:CDS |
| TCTCATAGTAGTTGGAAAGC+AGG | 0.503054 | 5.1:+35264437 | None:intergenic |
| AAGGCTTACATTTCTTCTGA+TGG | 0.503999 | 5.1:-35264763 | MS.gene90601:CDS |
| TTATTCTCAGTCTCATTACA+TGG | 0.508829 | 5.1:-35265168 | MS.gene90601:CDS |
| CACACAGCAATAGAGCTTAT+GGG | 0.511438 | 5.1:-35264387 | MS.gene90601:CDS |
| GCAGCGGCTTTCACTAATCA+AGG | 0.516685 | 5.1:-35264211 | MS.gene90601:CDS |
| TTTAATGTAACTGACCAAGA+TGG | 0.522792 | 5.1:-35264619 | MS.gene90601:CDS |
| CATGCTAATATTGATGCTGA+GGG | 0.531891 | 5.1:-35263901 | MS.gene90601:CDS |
| GAGCTTCTGTGTAATGTGCT+TGG | 0.535698 | 5.1:-35264189 | MS.gene90601:CDS |
| CGATAATAGGCCAACTCTGT+CGG | 0.536108 | 5.1:+35262978 | None:intergenic |
| GCTTACATTTCTTCTGATGG+TGG | 0.539478 | 5.1:-35264760 | MS.gene90601:CDS |
| TCATGCTAATATTGATGCTG+AGG | 0.542296 | 5.1:-35263902 | MS.gene90601:CDS |
| TTACTATTGAATGTAGGGAT+AGG | 0.544712 | 5.1:-35263981 | MS.gene90601:CDS |
| AGCAGAACCTGTTTCCTCGT+CGG | 0.554657 | 5.1:+35264245 | None:intergenic |
| CTCTGCACCACCGACAGAGT+TGG | 0.561892 | 5.1:-35262988 | MS.gene90601:CDS |
| CTTCTGTGTAATGTGCTTGG+TGG | 0.570795 | 5.1:-35264186 | MS.gene90601:CDS |
| GGTGGTGGAAACAGGAAAAG+AGG | 0.576386 | 5.1:-35264168 | MS.gene90601:CDS |
| CCAACTACTATGAGATCTGT+TGG | 0.577524 | 5.1:-35264429 | MS.gene90601:CDS |
| TTAGAAGAATGAACCCTCCA+AGG | 0.580242 | 5.1:-35265124 | MS.gene90601:intron |
| TGTTGGTGTTAAACAAACAC+TGG | 0.585143 | 5.1:-35264412 | MS.gene90601:CDS |
| ATTACATCAAGCATATAGAT+GGG | 0.598451 | 5.1:-35263716 | MS.gene90601:CDS |
| GAATCTTGAGGTACAGACTC+AGG | 0.602348 | 5.1:+35262772 | None:intergenic |
| TATTGAGAGAAGAGTTTCTG+AGG | 0.605394 | 5.1:-35263637 | MS.gene90601:intron |
| TATAACAGTGGCATTTGGAG+AGG | 0.614763 | 5.1:+35264989 | None:intergenic |
| CTTATGGGAAGTGATAGGCC+AGG | 0.625341 | 5.1:-35264372 | MS.gene90601:CDS |
| GCAGAAGTAACAACGAAAGG+AGG | 0.625698 | 5.1:-35262910 | MS.gene90601:CDS |
| AGGGCAGAAGTAACAACGAA+AGG | 0.626664 | 5.1:-35262913 | MS.gene90601:CDS |
| GAATAGCCTCACAGTTACAA+GGG | 0.627441 | 5.1:-35262932 | MS.gene90601:CDS |
| TGATGAGATTTAGATCAGTG+AGG | 0.629185 | 5.1:+35264791 | None:intergenic |
| GTTGATAGTGCTAACAAACA+AGG | 0.636397 | 5.1:-35264838 | MS.gene90601:CDS |
| ATATATACCTGATATGCTTG+TGG | 0.647448 | 5.1:+35263877 | None:intergenic |
| AACTGACCAAGATGGAAACA+AGG | 0.648970 | 5.1:-35264611 | MS.gene90601:CDS |
| CTGCTATAACTGACTCGCAG+CGG | 0.649708 | 5.1:-35264227 | MS.gene90601:CDS |
| CTTCTGCCCTTGTAACTGTG+AGG | 0.651693 | 5.1:+35262926 | None:intergenic |
| TAATAGGCCAACTCTGTCGG+TGG | 0.652365 | 5.1:+35262981 | None:intergenic |
| CCATAAGCTCTATTGCTGTG+TGG | 0.654498 | 5.1:+35264388 | None:intergenic |
| GATGGTGGATGGTTCATGGA+TGG | 0.659799 | 5.1:-35264745 | MS.gene90601:intron |
| TAAACATACCCTTATAACAG+TGG | 0.663440 | 5.1:+35264977 | None:intergenic |
| CAAATGCAACATAGTGAATG+CGG | 0.668006 | 5.1:-35264313 | MS.gene90601:CDS |
| GATCTTGTAGGAGAATCTTG+AGG | 0.691540 | 5.1:+35262760 | None:intergenic |
| ATGCAACATAGTGAATGCGG+AGG | 0.703276 | 5.1:-35264310 | MS.gene90601:CDS |
| ATGCTAATATTGATGCTGAG+GGG | 0.720303 | 5.1:-35263900 | MS.gene90601:CDS |
| TGTGATGCATGTGACCGACG+AGG | 0.784173 | 5.1:-35264259 | MS.gene90601:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTACTAAAATATTGTTT+AGG | + | chr5.1:35264692-35264711 | None:intergenic | 10.0% |
| !! | TATATTTGATTGTATATTGT+AGG | - | chr5.1:35264121-35264140 | MS.gene90601:CDS | 15.0% |
| !! | TCATAAATTAGTAAATTAAG+TGG | + | chr5.1:35264413-35264432 | None:intergenic | 15.0% |
| !!! | CACATGTTATTTAAAATAAA+GGG | + | chr5.1:35264552-35264571 | None:intergenic | 15.0% |
| !!! | TCACATGTTATTTAAAATAA+AGG | + | chr5.1:35264553-35264572 | None:intergenic | 15.0% |
| !!! | TTGTTTTGTTAATTTGTTAA+GGG | - | chr5.1:35264839-35264858 | MS.gene90601:CDS | 15.0% |
| !!! | TTTGTTTTGTTAATTTGTTA+AGG | - | chr5.1:35264838-35264857 | MS.gene90601:CDS | 15.0% |
| !!! | TTTTTTTGTTGTTGAAATTT+TGG | - | chr5.1:35262973-35262992 | MS.gene90601:CDS | 15.0% |
| !! | TAAGAATAGATTATCTAACA+TGG | + | chr5.1:35264499-35264518 | None:intergenic | 20.0% |
| !! | TATTTATGAATTTAGTCTCT+TGG | - | chr5.1:35263395-35263414 | MS.gene90601:intron | 20.0% |
| !! | TTGATCTTTACAAATAAACA+TGG | - | chr5.1:35264021-35264040 | MS.gene90601:CDS | 20.0% |
| !! | TTTATTTGTAAAGATCAAAG+TGG | + | chr5.1:35264019-35264038 | None:intergenic | 20.0% |
| !!! | ACATGTTTATTTTATACAAG+TGG | - | chr5.1:35264745-35264764 | MS.gene90601:intron | 20.0% |
| !!! | TGATAATCTTAACTTTTTGA+GGG | - | chr5.1:35263185-35263204 | MS.gene90601:intron | 20.0% |
| !!! | TGCTGTAATTTATGTTTTTA+TGG | - | chr5.1:35262938-35262957 | MS.gene90601:CDS | 20.0% |
| !!! | TTATTTAAAATAAAGGGTCA+TGG | + | chr5.1:35264546-35264565 | None:intergenic | 20.0% |
| !!! | TTGATAATCTTAACTTTTTG+AGG | - | chr5.1:35263184-35263203 | MS.gene90601:intron | 20.0% |
| ! | AAAGTAAACTAACAAGATTG+TGG | + | chr5.1:35264637-35264656 | None:intergenic | 25.0% |
| ! | AACACAATACTCAAAGTAAA+GGG | - | chr5.1:35265064-35265083 | MS.gene90601:intron | 25.0% |
| ! | ACTAATTTATGATTTCCTGT+AGG | - | chr5.1:35264421-35264440 | MS.gene90601:CDS | 25.0% |
| ! | ATACAAGATAAACAATGAAG+AGG | + | chr5.1:35264450-35264469 | None:intergenic | 25.0% |
| ! | ATTACAGCATACTCAAAAAA+AGG | + | chr5.1:35262927-35262946 | None:intergenic | 25.0% |
| ! | ATTACATCAAGCATATAGAT+GGG | - | chr5.1:35264147-35264166 | MS.gene90601:CDS | 25.0% |
| ! | ATTATCTAACATGGAAAAGT+AGG | + | chr5.1:35264490-35264509 | None:intergenic | 25.0% |
| ! | CTAATTTATGATTTCCTGTA+GGG | - | chr5.1:35264422-35264441 | MS.gene90601:CDS | 25.0% |
| ! | TAACACAATACTCAAAGTAA+AGG | - | chr5.1:35265063-35265082 | MS.gene90601:intron | 25.0% |
| ! | TACAAGATAAACAATGAAGA+GGG | + | chr5.1:35264449-35264468 | None:intergenic | 25.0% |
| ! | TATTACATCAAGCATATAGA+TGG | - | chr5.1:35264146-35264165 | MS.gene90601:CDS | 25.0% |
| ! | TCTAAATCTCATCATAACTA+AGG | - | chr5.1:35263081-35263100 | MS.gene90601:intron | 25.0% |
| ! | TGTTGTTACTATTGAATGTA+GGG | - | chr5.1:35263877-35263896 | MS.gene90601:intron | 25.0% |
| !! | AAAGTCAATTTGTATTTTGC+AGG | - | chr5.1:35263003-35263022 | MS.gene90601:CDS | 25.0% |
| !! | ATCTTTTGTTAACTTTGGTT+TGG | - | chr5.1:35265156-35265175 | MS.gene90601:CDS | 25.0% |
| !! | ATTTTATACAAGTGGCAATT+AGG | - | chr5.1:35264753-35264772 | MS.gene90601:CDS | 25.0% |
| !! | CATTTTGGATTACATTAGAA+AGG | - | chr5.1:35263288-35263307 | MS.gene90601:intron | 25.0% |
| !! | TCTAGATCTTTTGTTAACTT+TGG | - | chr5.1:35265151-35265170 | MS.gene90601:CDS | 25.0% |
| !! | TGTAGCTTTTGTTAAAAACA+CGG | + | chr5.1:35264322-35264341 | None:intergenic | 25.0% |
| !! | TTTTAGTACTTACTGATGTT+TGG | - | chr5.1:35264261-35264280 | MS.gene90601:CDS | 25.0% |
| !!! | GATAATCTTAACTTTTTGAG+GGG | - | chr5.1:35263186-35263205 | MS.gene90601:intron | 25.0% |
| AAAAAAACTAGTACCTTGGA+GGG | + | chr5.1:35262755-35262774 | None:intergenic | 30.0% | |
| AATCTTGCTAGTTGTGATAA+TGG | - | chr5.1:35264575-35264594 | MS.gene90601:intron | 30.0% | |
| ACAAGATCATCAATCTTTAG+TGG | - | chr5.1:35265118-35265137 | MS.gene90601:intron | 30.0% | |
| ATATATACCTGATATGCTTG+TGG | + | chr5.1:35263989-35264008 | None:intergenic | 30.0% | |
| ATGCAAAAAAACTAGTACCT+TGG | + | chr5.1:35262759-35262778 | None:intergenic | 30.0% | |
| CAAACAATGTACATAGTTAG+TGG | + | chr5.1:35263371-35263390 | None:intergenic | 30.0% | |
| CAAATGTTGATGTTGTTAAC+TGG | - | chr5.1:35263837-35263856 | MS.gene90601:intron | 30.0% | |
| CAGTAAATTTGACAGAATCA+CGG | - | chr5.1:35264289-35264308 | MS.gene90601:CDS | 30.0% | |
| CAGTTAACAACATCAACATT+TGG | + | chr5.1:35263839-35263858 | None:intergenic | 30.0% | |
| CTAAGACAATTGAATCCATT+AGG | - | chr5.1:35265029-35265048 | MS.gene90601:intron | 30.0% | |
| CTGTTGTTACTATTGAATGT+AGG | - | chr5.1:35263876-35263895 | MS.gene90601:intron | 30.0% | |
| GGTTTATAAGGTGATTTCAT+TGG | - | chr5.1:35264091-35264110 | MS.gene90601:CDS | 30.0% | |
| TAAACATACCCTTATAACAG+TGG | + | chr5.1:35262889-35262908 | None:intergenic | 30.0% | |
| TCAGCAAGTAGAAAATAATG+AGG | + | chr5.1:35262821-35262840 | None:intergenic | 30.0% | |
| TGAACTTAACCACAATTTGT+TGG | - | chr5.1:35264656-35264675 | MS.gene90601:intron | 30.0% | |
| TGTACTTTGTTGGGTTTATA+AGG | - | chr5.1:35264079-35264098 | MS.gene90601:CDS | 30.0% | |
| TTACTATTGAATGTAGGGAT+AGG | - | chr5.1:35263882-35263901 | MS.gene90601:intron | 30.0% | |
| TTATTCTCAGTCTCATTACA+TGG | - | chr5.1:35262695-35262714 | MS.gene90601:CDS | 30.0% | |
| TTCAGGGTTGTAATTGATAA+TGG | - | chr5.1:35262849-35262868 | MS.gene90601:CDS | 30.0% | |
| TTTAATGTAACTGACCAAGA+TGG | - | chr5.1:35263244-35263263 | MS.gene90601:intron | 30.0% | |
| TTTGACAGATATGCAATATG+TGG | - | chr5.1:35263934-35263953 | MS.gene90601:CDS | 30.0% | |
| ! | ATCAGATGATGTTTGATGAT+AGG | - | chr5.1:35263768-35263787 | MS.gene90601:intron | 30.0% |
| ! | CTAAAGATTGATGATCTTGT+AGG | + | chr5.1:35265118-35265137 | None:intergenic | 30.0% |
| ! | TCAGATGATGTTTGATGATA+GGG | - | chr5.1:35263769-35263788 | MS.gene90601:intron | 30.0% |
| ! | TTTCTGCATCTGATTTTACA+GGG | + | chr5.1:35264175-35264194 | None:intergenic | 30.0% |
| !!! | ACTTGCTGATTTGTTTTTTC+AGG | - | chr5.1:35262832-35262851 | MS.gene90601:CDS | 30.0% |
| !!! | CTTGCTGATTTGTTTTTTCA+GGG | - | chr5.1:35262833-35262852 | MS.gene90601:CDS | 30.0% |
| AACTGCTATTCAACTAACCT+TGG | + | chr5.1:35264602-35264621 | None:intergenic | 35.0% | |
| AAGGCTTACATTTCTTCTGA+TGG | - | chr5.1:35263100-35263119 | MS.gene90601:intron | 35.0% | |
| AAGTGGCAATTAGGTATTCT+TGG | - | chr5.1:35264762-35264781 | MS.gene90601:CDS | 35.0% | |
| ACAGACTTATGAGATTCCTT+TGG | - | chr5.1:35264046-35264065 | MS.gene90601:CDS | 35.0% | |
| AGAAAGGTGAGTGTTTCATT+TGG | - | chr5.1:35263304-35263323 | MS.gene90601:intron | 35.0% | |
| ATGCTAATATTGATGCTGAG+GGG | - | chr5.1:35263963-35263982 | MS.gene90601:CDS | 35.0% | |
| CAAAAAAACTAGTACCTTGG+AGG | + | chr5.1:35262756-35262775 | None:intergenic | 35.0% | |
| CAAATGCAACATAGTGAATG+CGG | - | chr5.1:35263550-35263569 | MS.gene90601:intron | 35.0% | |
| CATGCTAATATTGATGCTGA+GGG | - | chr5.1:35263962-35263981 | MS.gene90601:CDS | 35.0% | |
| CATTCACTATGTTGCATTTG+AGG | + | chr5.1:35263550-35263569 | None:intergenic | 35.0% | |
| GAATCCATTAGGCAAACAAT+TGG | - | chr5.1:35265040-35265059 | MS.gene90601:intron | 35.0% | |
| GTACTTACTGATGTTTGGAT+TGG | - | chr5.1:35264266-35264285 | MS.gene90601:CDS | 35.0% | |
| GTTAACACTTTCTATGTTCG+TGG | - | chr5.1:35264983-35265002 | MS.gene90601:intron | 35.0% | |
| GTTACCAATTGTTTGCCTAA+TGG | + | chr5.1:35265047-35265066 | None:intergenic | 35.0% | |
| TACGTGTTACGTTCGATAAT+AGG | + | chr5.1:35264901-35264920 | None:intergenic | 35.0% | |
| TATTGAGAGAAGAGTTTCTG+AGG | - | chr5.1:35264226-35264245 | MS.gene90601:CDS | 35.0% | |
| TCATGCTAATATTGATGCTG+AGG | - | chr5.1:35263961-35263980 | MS.gene90601:CDS | 35.0% | |
| TCCAAATGCCACTGTTATAA+GGG | - | chr5.1:35262878-35262897 | MS.gene90601:CDS | 35.0% | |
| TGATGAGATTTAGATCAGTG+AGG | + | chr5.1:35263075-35263094 | None:intergenic | 35.0% | |
| TTTGTCAAGCCAACAAATTG+TGG | + | chr5.1:35264668-35264687 | None:intergenic | 35.0% | |
| ! | CTTTCTGCATCTGATTTTAC+AGG | + | chr5.1:35264176-35264195 | None:intergenic | 35.0% |
| ! | GGTAACAGATGAAGTCATTT+TGG | - | chr5.1:35263273-35263292 | MS.gene90601:intron | 35.0% |
| ! | TGTTGTTAACTGGTCTGATA+AGG | - | chr5.1:35263847-35263866 | MS.gene90601:intron | 35.0% |
| ! | TTCTGCATCTGATTTTACAG+GGG | + | chr5.1:35264174-35264193 | None:intergenic | 35.0% |
| !! | GTTGATAGTGCTAACAAACA+AGG | - | chr5.1:35263025-35263044 | MS.gene90601:intron | 35.0% |
| !! | TGTTGGTGTTAAACAAACAC+TGG | - | chr5.1:35263451-35263470 | MS.gene90601:intron | 35.0% |
| AACTGACCAAGATGGAAACA+AGG | - | chr5.1:35263252-35263271 | MS.gene90601:intron | 40.0% | |
| ACCCTTATAACAGTGGCATT+TGG | + | chr5.1:35262882-35262901 | None:intergenic | 40.0% | |
| AGAATAGCCTCACAGTTACA+AGG | - | chr5.1:35264930-35264949 | MS.gene90601:intron | 40.0% | |
| ATGAGATTCCTTTGGTTGCT+TGG | - | chr5.1:35264054-35264073 | MS.gene90601:CDS | 40.0% | |
| ATTCGACGCATACTGATAGA+AGG | - | chr5.1:35263741-35263760 | MS.gene90601:intron | 40.0% | |
| CACACAGCAATAGAGCTTAT+GGG | - | chr5.1:35263476-35263495 | MS.gene90601:intron | 40.0% | |
| CCAACAGATCTCATAGTAGT+TGG | + | chr5.1:35263437-35263456 | None:intergenic | 40.0% | |
| CCAACTACTATGAGATCTGT+TGG | - | chr5.1:35263434-35263453 | MS.gene90601:intron | 40.0% | |
| CTCCAAATGCCACTGTTATA+AGG | - | chr5.1:35262877-35262896 | MS.gene90601:CDS | 40.0% | |
| GAATAGCCTCACAGTTACAA+GGG | - | chr5.1:35264931-35264950 | MS.gene90601:intron | 40.0% | |
| GATCTTGTAGGAGAATCTTG+AGG | + | chr5.1:35265106-35265125 | None:intergenic | 40.0% | |
| GCTTACATTTCTTCTGATGG+TGG | - | chr5.1:35263103-35263122 | MS.gene90601:intron | 40.0% | |
| TAGAGCTTATGGGAAGTGAT+AGG | - | chr5.1:35263486-35263505 | MS.gene90601:intron | 40.0% | |
| TATAACAGTGGCATTTGGAG+AGG | + | chr5.1:35262877-35262896 | None:intergenic | 40.0% | |
| TCTCATAGTAGTTGGAAAGC+AGG | + | chr5.1:35263429-35263448 | None:intergenic | 40.0% | |
| TGCTTGGTCTGTACTTTGTT+GGG | - | chr5.1:35264070-35264089 | MS.gene90601:CDS | 40.0% | |
| TTAGAAGAATGAACCCTCCA+AGG | - | chr5.1:35262739-35262758 | MS.gene90601:CDS | 40.0% | |
| TTGCTTGGTCTGTACTTTGT+TGG | - | chr5.1:35264069-35264088 | MS.gene90601:CDS | 40.0% | |
| ! | ACAGTGTCGAAAACAAGCTT+TGG | + | chr5.1:35263908-35263927 | None:intergenic | 40.0% |
| ! | CTGTTACCTTGTTTCCATCT+TGG | + | chr5.1:35263261-35263280 | None:intergenic | 40.0% |
| !! | ACATTTCTTCTGATGGTGGA+TGG | - | chr5.1:35263107-35263126 | MS.gene90601:intron | 40.0% |
| !! | CTAGTTGTGATAATGGTCCA+AGG | - | chr5.1:35264582-35264601 | MS.gene90601:CDS | 40.0% |
| ACATAGTGAATGCGGAGGTT+TGG | - | chr5.1:35263558-35263577 | MS.gene90601:intron | 45.0% | |
| AGGGCAGAAGTAACAACGAA+AGG | - | chr5.1:35264950-35264969 | MS.gene90601:intron | 45.0% | |
| AGTACAGACCAAGCAACCAA+AGG | + | chr5.1:35264065-35264084 | None:intergenic | 45.0% | |
| ATGCAACATAGTGAATGCGG+AGG | - | chr5.1:35263553-35263572 | MS.gene90601:intron | 45.0% | |
| CCACACAGCAATAGAGCTTA+TGG | - | chr5.1:35263475-35263494 | MS.gene90601:intron | 45.0% | |
| CCATAAGCTCTATTGCTGTG+TGG | + | chr5.1:35263478-35263497 | None:intergenic | 45.0% | |
| CGATAATAGGCCAACTCTGT+CGG | + | chr5.1:35264888-35264907 | None:intergenic | 45.0% | |
| CTTCTGTGTAATGTGCTTGG+TGG | - | chr5.1:35263677-35263696 | MS.gene90601:CDS | 45.0% | |
| GAATCTTGAGGTACAGACTC+AGG | + | chr5.1:35265094-35265113 | None:intergenic | 45.0% | |
| GAGCTTCTGTGTAATGTGCT+TGG | - | chr5.1:35263674-35263693 | MS.gene90601:CDS | 45.0% | |
| GCAGAAGTAACAACGAAAGG+AGG | - | chr5.1:35264953-35264972 | MS.gene90601:intron | 45.0% | |
| GTAGTTGGAAAGCAGGATTC+AGG | + | chr5.1:35263422-35263441 | None:intergenic | 45.0% | |
| TTCTATGTTCGTGGAGCTTC+TGG | - | chr5.1:35264992-35265011 | MS.gene90601:CDS | 45.0% | |
| ! | CTCACTTCTGAAAGCAATCC+TGG | + | chr5.1:35263512-35263531 | None:intergenic | 45.0% |
| !! | AGAGAAGAGTTTCTGAGGTG+AGG | - | chr5.1:35264231-35264250 | MS.gene90601:CDS | 45.0% |
| !! | GAGAAGAGTTTCTGAGGTGA+GGG | - | chr5.1:35264232-35264251 | MS.gene90601:CDS | 45.0% |
| !! | TTCTGATGGTGGATGGTTCA+TGG | - | chr5.1:35263114-35263133 | MS.gene90601:intron | 45.0% |
| ACAATGAAGAGGGTCCCTAC+AGG | + | chr5.1:35264439-35264458 | None:intergenic | 50.0% | |
| AGCAGAACCTGTTTCCTCGT+CGG | + | chr5.1:35263621-35263640 | None:intergenic | 50.0% | |
| CTTATGGGAAGTGATAGGCC+AGG | - | chr5.1:35263491-35263510 | MS.gene90601:intron | 50.0% | |
| CTTCTGCCCTTGTAACTGTG+AGG | + | chr5.1:35264940-35264959 | None:intergenic | 50.0% | |
| GCAGCGGCTTTCACTAATCA+AGG | - | chr5.1:35263652-35263671 | MS.gene90601:CDS | 50.0% | |
| TAATAGGCCAACTCTGTCGG+TGG | + | chr5.1:35264885-35264904 | None:intergenic | 50.0% | |
| ! | CTGTGTAATGTGCTTGGTGG+TGG | - | chr5.1:35263680-35263699 | MS.gene90601:CDS | 50.0% |
| !! | ATGTGCTTGGTGGTGGAAAC+AGG | - | chr5.1:35263687-35263706 | MS.gene90601:CDS | 50.0% |
| !! | CTGCTATAACTGACTCGCAG+CGG | - | chr5.1:35263636-35263655 | MS.gene90601:intron | 50.0% |
| !! | GATGGTGGATGGTTCATGGA+TGG | - | chr5.1:35263118-35263137 | MS.gene90601:intron | 50.0% |
| !! | GGTGGTGGAAACAGGAAAAG+AGG | - | chr5.1:35263695-35263714 | MS.gene90601:CDS | 50.0% |
| CATGTGACCGACGAGGAAAC+AGG | - | chr5.1:35263611-35263630 | MS.gene90601:intron | 55.0% | |
| TGAGGGGCCACAAGCATATC+AGG | - | chr5.1:35263979-35263998 | MS.gene90601:CDS | 55.0% | |
| TGTGATGCATGTGACCGACG+AGG | - | chr5.1:35263604-35263623 | MS.gene90601:intron | 55.0% | |
| CTCTGCACCACCGACAGAGT+TGG | - | chr5.1:35264875-35264894 | MS.gene90601:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 35262690 | 35265195 | 35262690 | ID=MS.gene90601 |
| chr5.1 | mRNA | 35262690 | 35265195 | 35262690 | ID=MS.gene90601.t1;Parent=MS.gene90601 |
| chr5.1 | exon | 35265125 | 35265195 | 35265125 | ID=MS.gene90601.t1.exon1;Parent=MS.gene90601.t1 |
| chr5.1 | CDS | 35265125 | 35265195 | 35265125 | ID=cds.MS.gene90601.t1;Parent=MS.gene90601.t1 |
| chr5.1 | exon | 35264986 | 35265031 | 35264986 | ID=MS.gene90601.t1.exon2;Parent=MS.gene90601.t1 |
| chr5.1 | CDS | 35264986 | 35265031 | 35264986 | ID=cds.MS.gene90601.t1;Parent=MS.gene90601.t1 |
| chr5.1 | exon | 35264746 | 35264860 | 35264746 | ID=MS.gene90601.t1.exon3;Parent=MS.gene90601.t1 |
| chr5.1 | CDS | 35264746 | 35264860 | 35264746 | ID=cds.MS.gene90601.t1;Parent=MS.gene90601.t1 |
| chr5.1 | exon | 35264576 | 35264643 | 35264576 | ID=MS.gene90601.t1.exon4;Parent=MS.gene90601.t1 |
| chr5.1 | CDS | 35264576 | 35264643 | 35264576 | ID=cds.MS.gene90601.t1;Parent=MS.gene90601.t1 |
| chr5.1 | exon | 35263885 | 35264475 | 35263885 | ID=MS.gene90601.t1.exon5;Parent=MS.gene90601.t1 |
| chr5.1 | CDS | 35263885 | 35264475 | 35263885 | ID=cds.MS.gene90601.t1;Parent=MS.gene90601.t1 |
| chr5.1 | exon | 35263638 | 35263742 | 35263638 | ID=MS.gene90601.t1.exon6;Parent=MS.gene90601.t1 |
| chr5.1 | CDS | 35263638 | 35263742 | 35263638 | ID=cds.MS.gene90601.t1;Parent=MS.gene90601.t1 |
| chr5.1 | exon | 35262690 | 35263025 | 35262690 | ID=MS.gene90601.t1.exon7;Parent=MS.gene90601.t1 |
| chr5.1 | CDS | 35262690 | 35263025 | 35262690 | ID=cds.MS.gene90601.t1;Parent=MS.gene90601.t1 |
| Gene Sequence |
| Protein sequence |
