Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90953.t1 | XP_013456514.1 | 94.9 | 762 | 37 | 1 | 1 | 760 | 13 | 774 | 0.00E+00 | 1431 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90953.t1 | Q9C6C3 | 63.3 | 781 | 250 | 11 | 1 | 760 | 12 | 776 | 7.1e-269 | 927.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90953.t1 | A0A072UXE8 | 94.9 | 762 | 37 | 1 | 1 | 760 | 13 | 774 | 0.0e+00 | 1431.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene031837 | MS.gene90953 | PPI |
| MS.gene28931 | MS.gene90953 | PPI |
| MS.gene052299 | MS.gene90953 | PPI |
| MS.gene003381 | MS.gene90953 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90953.t1 | MTR_4g074170 | 96.325 | 762 | 26 | 1 | 1 | 760 | 13 | 774 | 0.0 | 1525 |
| MS.gene90953.t1 | MTR_7g020860 | 46.914 | 810 | 364 | 11 | 1 | 746 | 11 | 818 | 0.0 | 702 |
| MS.gene90953.t1 | MTR_8g100100 | 44.987 | 798 | 379 | 12 | 1 | 755 | 11 | 791 | 0.0 | 653 |
| MS.gene90953.t1 | MTR_8g100100 | 44.763 | 802 | 381 | 12 | 1 | 755 | 11 | 797 | 0.0 | 646 |
| MS.gene90953.t1 | MTR_3g098680 | 45.259 | 791 | 370 | 14 | 1 | 743 | 11 | 786 | 0.0 | 636 |
| MS.gene90953.t1 | MTR_7g020860 | 50.641 | 624 | 266 | 8 | 1 | 583 | 11 | 633 | 0.0 | 617 |
| MS.gene90953.t1 | MTR_2g080950 | 43.704 | 135 | 54 | 4 | 470 | 601 | 18 | 133 | 1.75e-24 | 108 |
| MS.gene90953.t1 | MTR_8g464390 | 42.222 | 135 | 56 | 4 | 470 | 601 | 18 | 133 | 3.57e-23 | 103 |
| MS.gene90953.t1 | MTR_6g080710 | 41.985 | 131 | 55 | 4 | 468 | 594 | 16 | 129 | 1.14e-22 | 99.0 |
| MS.gene90953.t1 | MTR_8g038400 | 36.923 | 130 | 69 | 5 | 467 | 595 | 20 | 137 | 5.69e-17 | 84.0 |
| MS.gene90953.t1 | MTR_8g088320 | 38.393 | 112 | 51 | 4 | 477 | 584 | 21 | 118 | 2.13e-16 | 81.6 |
| MS.gene90953.t1 | MTR_2g030230 | 37.500 | 112 | 52 | 4 | 477 | 584 | 30 | 127 | 1.38e-15 | 79.3 |
| MS.gene90953.t1 | MTR_1g069000 | 46.053 | 76 | 39 | 1 | 471 | 546 | 10 | 83 | 7.49e-15 | 78.2 |
| MS.gene90953.t1 | MTR_8g067080 | 43.678 | 87 | 46 | 2 | 455 | 541 | 1 | 84 | 8.48e-15 | 77.8 |
| MS.gene90953.t1 | MTR_8g471110 | 43.678 | 87 | 46 | 2 | 455 | 541 | 1 | 84 | 8.48e-15 | 77.8 |
| MS.gene90953.t1 | MTR_8g067080 | 43.678 | 87 | 46 | 2 | 455 | 541 | 1 | 84 | 8.75e-15 | 77.8 |
| MS.gene90953.t1 | MTR_3g017500 | 36.567 | 134 | 66 | 5 | 467 | 596 | 24 | 142 | 1.05e-14 | 77.0 |
| MS.gene90953.t1 | MTR_3g017500 | 36.567 | 134 | 66 | 5 | 467 | 596 | 54 | 172 | 1.70e-14 | 76.6 |
| MS.gene90953.t1 | MTR_8g067090 | 36.290 | 124 | 69 | 5 | 477 | 600 | 22 | 135 | 5.66e-14 | 75.1 |
| MS.gene90953.t1 | MTR_8g471120 | 36.290 | 124 | 69 | 5 | 477 | 600 | 22 | 135 | 5.66e-14 | 75.1 |
| MS.gene90953.t1 | MTR_7g099830 | 54.717 | 53 | 24 | 0 | 471 | 523 | 10 | 62 | 2.34e-13 | 73.6 |
| MS.gene90953.t1 | MTR_2g080950 | 40.594 | 101 | 41 | 3 | 501 | 601 | 1 | 82 | 9.69e-13 | 71.2 |
| MS.gene90953.t1 | MTR_8g464390 | 38.614 | 101 | 43 | 3 | 501 | 601 | 1 | 82 | 1.52e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90953.t1 | AT1G60860 | 64.277 | 781 | 242 | 11 | 1 | 760 | 12 | 776 | 0.0 | 995 |
| MS.gene90953.t1 | AT1G10870 | 63.974 | 780 | 243 | 12 | 1 | 759 | 12 | 774 | 0.0 | 986 |
| MS.gene90953.t1 | AT1G10870 | 63.648 | 784 | 244 | 11 | 1 | 759 | 12 | 779 | 0.0 | 985 |
| MS.gene90953.t1 | AT1G60860 | 62.555 | 681 | 218 | 11 | 101 | 760 | 1 | 665 | 0.0 | 836 |
| MS.gene90953.t1 | AT1G60860 | 60.420 | 619 | 208 | 11 | 163 | 760 | 3 | 605 | 0.0 | 732 |
| MS.gene90953.t1 | AT5G13300 | 47.052 | 814 | 365 | 12 | 1 | 756 | 11 | 816 | 0.0 | 710 |
| MS.gene90953.t1 | AT5G61980 | 45.060 | 830 | 373 | 15 | 1 | 760 | 11 | 827 | 0.0 | 680 |
| MS.gene90953.t1 | AT5G54310 | 42.647 | 136 | 57 | 3 | 470 | 602 | 18 | 135 | 1.21e-23 | 105 |
| MS.gene90953.t1 | AT3G17660 | 42.241 | 116 | 49 | 2 | 475 | 590 | 26 | 123 | 3.23e-22 | 95.1 |
| MS.gene90953.t1 | AT3G17660 | 43.966 | 116 | 47 | 3 | 475 | 590 | 26 | 123 | 4.50e-22 | 96.3 |
| MS.gene90953.t1 | AT3G17660 | 42.241 | 116 | 49 | 2 | 475 | 590 | 26 | 123 | 7.67e-22 | 95.9 |
| MS.gene90953.t1 | AT3G07940 | 43.243 | 111 | 51 | 5 | 475 | 584 | 57 | 156 | 1.33e-17 | 84.3 |
| MS.gene90953.t1 | AT3G07940 | 43.243 | 111 | 51 | 5 | 475 | 584 | 57 | 156 | 3.82e-17 | 84.7 |
| MS.gene90953.t1 | AT4G21160 | 38.983 | 118 | 61 | 4 | 477 | 591 | 27 | 136 | 9.62e-17 | 82.8 |
| MS.gene90953.t1 | AT4G21160 | 38.983 | 118 | 61 | 4 | 477 | 591 | 27 | 136 | 9.62e-17 | 82.8 |
| MS.gene90953.t1 | AT4G21160 | 38.983 | 118 | 61 | 4 | 477 | 591 | 27 | 136 | 9.62e-17 | 82.8 |
| MS.gene90953.t1 | AT4G21160 | 38.983 | 118 | 61 | 4 | 477 | 591 | 27 | 136 | 9.62e-17 | 82.8 |
| MS.gene90953.t1 | AT4G05330 | 39.640 | 111 | 55 | 3 | 475 | 584 | 25 | 124 | 2.92e-16 | 81.3 |
| MS.gene90953.t1 | AT4G05330 | 39.640 | 111 | 55 | 3 | 475 | 584 | 25 | 124 | 2.92e-16 | 81.3 |
| MS.gene90953.t1 | AT2G35210 | 34.286 | 175 | 100 | 6 | 466 | 639 | 11 | 171 | 4.04e-15 | 78.6 |
| MS.gene90953.t1 | AT2G35210 | 34.286 | 175 | 100 | 6 | 466 | 639 | 11 | 171 | 5.97e-15 | 77.8 |
| MS.gene90953.t1 | AT3G17660 | 37.069 | 116 | 45 | 3 | 475 | 590 | 26 | 113 | 6.64e-15 | 75.1 |
| MS.gene90953.t1 | AT4G17890 | 54.688 | 64 | 27 | 1 | 477 | 540 | 25 | 86 | 6.45e-14 | 74.7 |
| MS.gene90953.t1 | AT2G37550 | 44.156 | 77 | 41 | 1 | 470 | 546 | 9 | 83 | 6.47e-14 | 75.5 |
| MS.gene90953.t1 | AT2G37550 | 44.156 | 77 | 41 | 1 | 470 | 546 | 9 | 83 | 6.47e-14 | 75.5 |
| MS.gene90953.t1 | AT4G17890 | 54.688 | 64 | 27 | 1 | 477 | 540 | 25 | 86 | 7.96e-14 | 74.7 |
| MS.gene90953.t1 | AT5G46750 | 51.429 | 70 | 32 | 1 | 471 | 540 | 16 | 83 | 1.38e-13 | 73.9 |
| MS.gene90953.t1 | AT3G53710 | 44.000 | 75 | 40 | 1 | 470 | 544 | 9 | 81 | 1.89e-13 | 73.9 |
| MS.gene90953.t1 | AT3G53710 | 44.000 | 75 | 40 | 1 | 470 | 544 | 9 | 81 | 1.89e-13 | 73.9 |
| MS.gene90953.t1 | AT3G53710 | 44.000 | 75 | 40 | 1 | 470 | 544 | 9 | 81 | 1.89e-13 | 73.9 |
| MS.gene90953.t1 | AT2G03430 | 40.230 | 87 | 52 | 0 | 668 | 754 | 83 | 169 | 1.48e-11 | 65.5 |
Find 162 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCACTAAATGAGGATATTT+TGG | 0.124193 | 4.2:-34538153 | MS.gene90953:CDS |
| ATACTTATTGTAATTCTATT+TGG | 0.131807 | 4.2:-34536837 | MS.gene90953:CDS |
| GGCATCCATTATTGCACTTA+TGG | 0.180506 | 4.2:+34539597 | None:intergenic |
| ATAGAATAGGAACCTGTTTC+TGG | 0.192308 | 4.2:+34545920 | None:intergenic |
| ATCCTCTGCATCCATCTTTA+TGG | 0.222480 | 4.2:+34538100 | None:intergenic |
| TTGGAGTTATTCAATAATTT+AGG | 0.249690 | 4.2:-34536862 | MS.gene90953:CDS |
| AAGCTTATCTTGCTCAATAT+TGG | 0.271200 | 4.2:+34538752 | None:intergenic |
| GATTCCGTTCAAGGCATAAT+AGG | 0.273907 | 4.2:-34538181 | MS.gene90953:CDS |
| TCTTCATATTTCGTGTTTAT+CGG | 0.282872 | 4.2:+34535595 | None:intergenic |
| GGTTTGGGAACCTACCATTT+TGG | 0.288939 | 4.2:-34536881 | MS.gene90953:CDS |
| TGTTTATATCAGCACCAAAT+TGG | 0.300897 | 4.2:+34535416 | None:intergenic |
| AGAAACAGCTGATGAGTTAA+AGG | 0.304443 | 4.2:-34544793 | MS.gene90953:CDS |
| TACTTATTGTAATTCTATTT+GGG | 0.314969 | 4.2:-34536836 | MS.gene90953:CDS |
| GCTGATTCATTAGAAGCATT+TGG | 0.333082 | 4.2:-34543961 | MS.gene90953:CDS |
| GCTGATGGCTCCCGTCCTTC+AGG | 0.333354 | 4.2:-34538645 | MS.gene90953:CDS |
| TTAATCCTCAAACAGGCTTC+AGG | 0.336208 | 4.2:+34535532 | None:intergenic |
| GGAATCCATAAGTGCAATAA+TGG | 0.336938 | 4.2:-34539602 | MS.gene90953:CDS |
| AAGTATTCCTACCGCGGGTT+TGG | 0.339913 | 4.2:+34538323 | None:intergenic |
| TACACCCTTTGAATAGATTC+TGG | 0.340734 | 4.2:+34544763 | None:intergenic |
| ATCTCCTCAGGACAGCTATA+GGG | 0.341643 | 4.2:-34544011 | MS.gene90953:intron |
| TTCTCCAATGTTCCAGAAAC+AGG | 0.351523 | 4.2:-34545932 | None:intergenic |
| AAAGATGCCCAGTCTGGTTC+AGG | 0.351894 | 4.2:+34537389 | None:intergenic |
| GTTGAGTTGTTGCTCCAATT+TGG | 0.352804 | 4.2:-34535430 | MS.gene90953:CDS |
| TATCTCCTCAGGACAGCTAT+AGG | 0.355481 | 4.2:-34544012 | MS.gene90953:intron |
| GACTGGGTAAACAAAATTAC+TGG | 0.355801 | 4.2:-34537718 | MS.gene90953:CDS |
| ATTATTGAATAACTCCAAAA+TGG | 0.357080 | 4.2:+34536867 | None:intergenic |
| AGTATTCCTACCGCGGGTTT+GGG | 0.363976 | 4.2:+34538324 | None:intergenic |
| TTAGTTACCTGATGAATATA+AGG | 0.365136 | 4.2:+34539441 | None:intergenic |
| AACATTAGATGTGAAGGTTT+GGG | 0.367326 | 4.2:-34536896 | MS.gene90953:CDS |
| TAACATTAGATGTGAAGGTT+TGG | 0.369093 | 4.2:-34536897 | MS.gene90953:CDS |
| GAACAAAATAGTGGCATGTT+TGG | 0.370329 | 4.2:-34538206 | MS.gene90953:CDS |
| TTGAAGTTGATGTCACAATA+AGG | 0.378712 | 4.2:+34535620 | None:intergenic |
| CCAATTACTTGCCTCGCCTT+TGG | 0.383476 | 4.2:+34538578 | None:intergenic |
| TCTAAATGCAATTTACCATA+AGG | 0.388952 | 4.2:+34537560 | None:intergenic |
| AGCCTCTTTAATCCTCAAAC+AGG | 0.392863 | 4.2:+34535525 | None:intergenic |
| TTTCAGGTATATCCTCTTCC+CGG | 0.396284 | 4.2:+34535707 | None:intergenic |
| GCTATAGGGGAAGCATATAA+TGG | 0.401537 | 4.2:-34543997 | MS.gene90953:CDS |
| AGAGACACTACCCGCTTCTT+CGG | 0.403499 | 4.2:+34537463 | None:intergenic |
| CATCAAGGATGCGAGGAGAT+TGG | 0.414926 | 4.2:-34538407 | MS.gene90953:CDS |
| CCATCTGAGATACTTTAAAC+TGG | 0.416847 | 4.2:-34539575 | MS.gene90953:intron |
| CCTCCAATTGATACACTAAC+AGG | 0.419592 | 4.2:+34543922 | None:intergenic |
| CAGAAAGTTGTTTCCGTGGT+TGG | 0.427831 | 4.2:-34535495 | MS.gene90953:CDS |
| TAAGCTTGCAAAACGGATAC+AGG | 0.432000 | 4.2:-34538736 | MS.gene90953:CDS |
| TCCGGAGTGCATCGCAATCT+TGG | 0.439650 | 4.2:-34537335 | MS.gene90953:CDS |
| GGATAGTAATAAATCTTTGA+TGG | 0.442034 | 4.2:-34537498 | MS.gene90953:CDS |
| ATGATCCTGAAGCCTGTTTG+AGG | 0.443167 | 4.2:-34535537 | MS.gene90953:CDS |
| TAGAGAAATCACTAGTCATC+CGG | 0.447952 | 4.2:-34535726 | MS.gene90953:CDS |
| TAATTCTGATAGTACACTAA+TGG | 0.448339 | 4.2:-34535452 | MS.gene90953:CDS |
| GCAGTGCTCCTGAACCAGAC+TGG | 0.452884 | 4.2:-34537397 | MS.gene90953:CDS |
| ATCTGTGCATTCTTATGATC+AGG | 0.455771 | 4.2:-34542161 | MS.gene90953:intron |
| TGTATAGGTAGAGCATGTAT+TGG | 0.462481 | 4.2:-34542393 | MS.gene90953:intron |
| TTATATTATTACAGATCAAA+AGG | 0.462710 | 4.2:-34538348 | MS.gene90953:CDS |
| AGGTTTAAAGATGCCCAGTC+TGG | 0.465472 | 4.2:+34537383 | None:intergenic |
| GGAACCTGTTTCTGGAACAT+TGG | 0.467030 | 4.2:+34545928 | None:intergenic |
| TGTTTGGTAGATTCCGTTCA+AGG | 0.468960 | 4.2:-34538190 | MS.gene90953:CDS |
| TGGTTGGTCTATATTACATC+TGG | 0.475078 | 4.2:-34535479 | MS.gene90953:CDS |
| CCTTACAAAAGCTTTGAAGC+AGG | 0.478464 | 4.2:-34538615 | MS.gene90953:CDS |
| AGGATCATGCTGATCTCCTT+CGG | 0.479476 | 4.2:+34535552 | None:intergenic |
| ATCTCCTTCGGTATCATCAT+GGG | 0.480413 | 4.2:+34535564 | None:intergenic |
| GATGAATATAAGGCTCCATT+TGG | 0.482572 | 4.2:+34539451 | None:intergenic |
| TAAAGAGCTTCTTCGCTCAC+AGG | 0.485694 | 4.2:-34543585 | MS.gene90953:intron |
| ATGAAGCTGATAGGATGGAC+TGG | 0.487239 | 4.2:-34537735 | MS.gene90953:CDS |
| AATGGAGCCTTATATTCATC+AGG | 0.487707 | 4.2:-34539448 | MS.gene90953:intron |
| ATACAGAACACAGGCAGAGC+TGG | 0.488200 | 4.2:-34538712 | MS.gene90953:CDS |
| GATCTCCTTCGGTATCATCA+TGG | 0.492164 | 4.2:+34535563 | None:intergenic |
| ATATAATTATAGTCGTTCTT+CGG | 0.492178 | 4.2:-34538228 | MS.gene90953:CDS |
| ATTCCGTTCAAGGCATAATA+GGG | 0.496660 | 4.2:-34538180 | MS.gene90953:CDS |
| ATCTATAACATTAGATGTGA+AGG | 0.499638 | 4.2:-34536902 | MS.gene90953:CDS |
| AATTCAGCAACAATATCTTC+CGG | 0.500213 | 4.2:+34541167 | None:intergenic |
| TATTGTAATTCTATTTGGGA+GGG | 0.502577 | 4.2:-34536832 | MS.gene90953:CDS |
| CATTTATAAACTCTGTCAAC+CGG | 0.503947 | 4.2:+34542366 | None:intergenic |
| AGGCTGAAAATGAAGCTGAT+AGG | 0.508257 | 4.2:-34537744 | MS.gene90953:CDS |
| TTTAAATTGGGAGGGATCTG+TGG | 0.511480 | 4.2:+34536631 | None:intergenic |
| GACTGGGCATCTTTAAACCT+TGG | 0.512691 | 4.2:-34537380 | MS.gene90953:CDS |
| TTGCTTGTTGAATGCCAGTA+AGG | 0.512810 | 4.2:-34534440 | None:intergenic |
| GATCCTGTTAGTGTATCAAT+TGG | 0.513937 | 4.2:-34543925 | MS.gene90953:CDS |
| ATACGACTTACTGAGCCAAA+TGG | 0.517252 | 4.2:-34539466 | MS.gene90953:CDS |
| GTGGATGTGCACAGATCGAC+TGG | 0.517433 | 4.2:+34538122 | None:intergenic |
| TTGAATAACTCCAAAATGGT+AGG | 0.518071 | 4.2:+34536871 | None:intergenic |
| TGCGAGGAGATTGGAAAAGG+AGG | 0.519980 | 4.2:-34538398 | MS.gene90953:CDS |
| TAGAGCATGTATTGGTTGAC+CGG | 0.520417 | 4.2:-34542385 | MS.gene90953:CDS |
| CCGTCAGTTAAAGATGCTGC+TGG | 0.520835 | 4.2:-34534524 | MS.gene90953:CDS |
| CTCTGCATCCATCTTTATGG+TGG | 0.521582 | 4.2:+34538103 | None:intergenic |
| TCATTAGAAGCATTTGGAGG+TGG | 0.523290 | 4.2:-34543955 | MS.gene90953:CDS |
| CAGTGCTCCTGAACCAGACT+GGG | 0.523590 | 4.2:-34537396 | MS.gene90953:CDS |
| CTTCTCGTACGTTTATAGCC+TGG | 0.525427 | 4.2:+34535650 | None:intergenic |
| GTGCACATCCACCATAAAGA+TGG | 0.528945 | 4.2:-34538111 | MS.gene90953:CDS |
| AACAATTATTTGCAGTGTAG+GGG | 0.531476 | 4.2:-34536681 | MS.gene90953:intron |
| ATAAACATGTGTGACTATCA+TGG | 0.532084 | 4.2:-34535400 | MS.gene90953:CDS |
| ATCACTAGTCATCCGGGAAG+AGG | 0.532106 | 4.2:-34535719 | MS.gene90953:CDS |
| ACGTAGTGCGGTGATAAACT+TGG | 0.534422 | 4.2:+34543622 | None:intergenic |
| CGTTCTTCGGAACAAAATAG+TGG | 0.534792 | 4.2:-34538215 | MS.gene90953:CDS |
| GGATGCGAGGAGATTGGAAA+AGG | 0.543094 | 4.2:-34538401 | MS.gene90953:CDS |
| AGGTTTCAAACCTGAAGGAC+GGG | 0.547280 | 4.2:+34538635 | None:intergenic |
| TTATTGTAATTCTATTTGGG+AGG | 0.549054 | 4.2:-34536833 | MS.gene90953:CDS |
| CGGTGCCAGAATCTATTCAA+AGG | 0.549863 | 4.2:-34544768 | MS.gene90953:CDS |
| TTGTAAGGTTTCAAACCTGA+AGG | 0.549880 | 4.2:+34538630 | None:intergenic |
| TGTTGATTTGCAAGATGCCA+AGG | 0.551744 | 4.2:-34542345 | MS.gene90953:intron |
| GAACCTATGCTAGGTGCTGA+TGG | 0.554421 | 4.2:-34538660 | MS.gene90953:CDS |
| CCTGTTAGTGTATCAATTGG+AGG | 0.555903 | 4.2:-34543922 | MS.gene90953:intron |
| GTGATAAACTTGGATATGAC+GGG | 0.556307 | 4.2:+34543632 | None:intergenic |
| CTGCCCTATTATGCCTTGAA+CGG | 0.557204 | 4.2:+34538177 | None:intergenic |
| TCTCCTCAGGACAGCTATAG+GGG | 0.557373 | 4.2:-34544010 | MS.gene90953:intron |
| TGAAAATGCTTACCTTCGCA+TGG | 0.560443 | 4.2:+34536597 | None:intergenic |
| CTGGAAATGCAGTGGTGCAA+TGG | 0.560564 | 4.2:+34535370 | None:intergenic |
| CCAGCAGCATCTTTAACTGA+CGG | 0.564531 | 4.2:+34534524 | None:intergenic |
| TCCAAGATTGCGATGCACTC+CGG | 0.564657 | 4.2:+34537334 | None:intergenic |
| CCAGTTTAAAGTATCTCAGA+TGG | 0.565755 | 4.2:+34539575 | None:intergenic |
| TATTGTTGCTGAATTAGAAG+AGG | 0.565780 | 4.2:-34541159 | MS.gene90953:intron |
| ATCTGTTAAAACGATCATCA+AGG | 0.567007 | 4.2:-34538422 | MS.gene90953:CDS |
| TAGGGCAGTGTCACTAAATG+AGG | 0.567074 | 4.2:-34538162 | MS.gene90953:CDS |
| GAAACAGAAAGTTGTTTCCG+TGG | 0.567443 | 4.2:-34535499 | MS.gene90953:CDS |
| AGCAAGATAAGCTTGCAAAA+CGG | 0.567886 | 4.2:-34538743 | MS.gene90953:CDS |
| TGCTTCTACATCATGATGAA+AGG | 0.569884 | 4.2:-34536807 | MS.gene90953:intron |
| GATTCATTAGAAGCATTTGG+AGG | 0.570143 | 4.2:-34543958 | MS.gene90953:CDS |
| AGTTATTGCTCCCATCTCCA+TGG | 0.571340 | 4.2:+34534481 | None:intergenic |
| CACCATAAAGATGGATGCAG+AGG | 0.577911 | 4.2:-34538102 | MS.gene90953:CDS |
| TACTGTGCTTGAAAGAGCCA+TGG | 0.578067 | 4.2:-34534498 | MS.gene90953:CDS |
| TCAGCACACTTATCATTCCC+AGG | 0.578263 | 4.2:+34537422 | None:intergenic |
| AAATGCAATTTACCATAAGG+TGG | 0.578571 | 4.2:+34537563 | None:intergenic |
| TGAAGCTGATAGGATGGACT+GGG | 0.578586 | 4.2:-34537734 | MS.gene90953:CDS |
| TGTAATAATATAAACTCCCA+TGG | 0.580809 | 4.2:+34538358 | None:intergenic |
| AGAGAAATCACTAGTCATCC+GGG | 0.582473 | 4.2:-34535725 | MS.gene90953:CDS |
| CTTGAAAGAGCCATGGAGAT+GGG | 0.583262 | 4.2:-34534491 | MS.gene90953:CDS |
| TTCTTTGACAAGTCAACAAG+AGG | 0.583912 | 4.2:-34537519 | MS.gene90953:CDS |
| CTTACAAAAGCTTTGAAGCA+GGG | 0.584053 | 4.2:-34538614 | MS.gene90953:CDS |
| GGTGCCAGAATCTATTCAAA+GGG | 0.589241 | 4.2:-34544767 | MS.gene90953:CDS |
| TCTGTGGAGCATGGTTTCGA+AGG | 0.591143 | 4.2:+34536647 | None:intergenic |
| TGCACCACTGCATTTCCAGT+GGG | 0.592100 | 4.2:-34535366 | MS.gene90953:CDS |
| TGGGAGGGATCTGTGGAGCA+TGG | 0.598157 | 4.2:+34536638 | None:intergenic |
| GGTGATAAACTTGGATATGA+CGG | 0.598806 | 4.2:+34543631 | None:intergenic |
| AAACACGAAATATGAAGATG+TGG | 0.600151 | 4.2:-34535590 | MS.gene90953:CDS |
| GCTTGAAAGAGCCATGGAGA+TGG | 0.603752 | 4.2:-34534492 | MS.gene90953:CDS |
| AAGGTTTCAAACCTGAAGGA+CGG | 0.605973 | 4.2:+34538634 | None:intergenic |
| GAGCCATCAGCACCTAGCAT+AGG | 0.606773 | 4.2:+34538657 | None:intergenic |
| GGGATGCAGTCTGCAACCAA+AGG | 0.607648 | 4.2:-34538594 | MS.gene90953:CDS |
| TGCTTCTAATGAATCAGCAA+AGG | 0.614038 | 4.2:+34543966 | None:intergenic |
| TGAAAATGAAGCTGATAGGA+TGG | 0.614641 | 4.2:-34537740 | MS.gene90953:CDS |
| TAGATTCAAACAGTTAAACA+AGG | 0.615988 | 4.2:-34538447 | MS.gene90953:CDS |
| CTGTTGTGTATTGAATGCTC+CGG | 0.617714 | 4.2:-34537353 | MS.gene90953:CDS |
| TTGCACCACTGCATTTCCAG+TGG | 0.618119 | 4.2:-34535367 | MS.gene90953:CDS |
| AGCCTGTTTGAGGATTAAAG+AGG | 0.619620 | 4.2:-34535527 | MS.gene90953:CDS |
| CAGTTTAAAGTATCTCAGAT+GGG | 0.621267 | 4.2:+34539576 | None:intergenic |
| AGAAAAGTACATCCATGCGA+AGG | 0.625858 | 4.2:-34536609 | MS.gene90953:intron |
| AGTAGCTAATTCACGTAGTG+CGG | 0.628754 | 4.2:+34543610 | None:intergenic |
| TCTTGGAGTTCATATCTCAA+AGG | 0.632215 | 4.2:-34537318 | MS.gene90953:intron |
| ATGCAGAGGATACAGATCTA+CGG | 0.634035 | 4.2:-34538088 | MS.gene90953:CDS |
| ACATGTGTGACTATCATGGA+AGG | 0.641582 | 4.2:-34535396 | MS.gene90953:CDS |
| GTTCCCCATGATGATACCGA+AGG | 0.653048 | 4.2:-34535568 | MS.gene90953:CDS |
| TCTCCTTCGGTATCATCATG+GGG | 0.654258 | 4.2:+34535565 | None:intergenic |
| GCAGTCTGCAACCAAAGGCG+AGG | 0.654904 | 4.2:-34538589 | MS.gene90953:intron |
| ATACACTAACAGGATCATCA+TGG | 0.655340 | 4.2:+34543932 | None:intergenic |
| AAATACATACTAGATTGAAG+CGG | 0.659466 | 4.2:+34539753 | None:intergenic |
| AGCAATACTGAACCTATGCT+AGG | 0.663682 | 4.2:-34538669 | MS.gene90953:CDS |
| AAACGATCATCAAGGATGCG+AGG | 0.666466 | 4.2:-34538414 | MS.gene90953:CDS |
| TTCTTTGAAGAAGAATACAC+CGG | 0.667197 | 4.2:-34541186 | MS.gene90953:CDS |
| CAGCTGATGAGTTAAAGGAT+CGG | 0.673704 | 4.2:-34544788 | MS.gene90953:CDS |
| CAATACACAACAGTATACCA+AGG | 0.684352 | 4.2:+34537363 | None:intergenic |
| ATCAAAAGGACCCAAACCCG+CGG | 0.686528 | 4.2:-34538334 | MS.gene90953:intron |
| GATGTAATATAGACCAACCA+CGG | 0.697038 | 4.2:+34535482 | None:intergenic |
| GATACAGGAATACAGAACAC+AGG | 0.698065 | 4.2:-34538721 | MS.gene90953:CDS |
| GCACAGATTTGTCAAAACGA+CGG | 0.721276 | 4.2:+34542176 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 34534442 | 34545947 | 34534442 | ID=MS.gene90953 |
| chr4.2 | mRNA | 34534442 | 34545947 | 34534442 | ID=MS.gene90953.t1;Parent=MS.gene90953 |
| chr4.2 | exon | 34545933 | 34545947 | 34545933 | ID=MS.gene90953.t1.exon1;Parent=MS.gene90953.t1 |
| chr4.2 | CDS | 34545933 | 34545947 | 34545933 | ID=cds.MS.gene90953.t1;Parent=MS.gene90953.t1 |
| chr4.2 | exon | 34544753 | 34544829 | 34544753 | ID=MS.gene90953.t1.exon2;Parent=MS.gene90953.t1 |
| chr4.2 | CDS | 34544753 | 34544829 | 34544753 | ID=cds.MS.gene90953.t1;Parent=MS.gene90953.t1 |
| chr4.2 | exon | 34543923 | 34544023 | 34543923 | ID=MS.gene90953.t1.exon3;Parent=MS.gene90953.t1 |
| chr4.2 | CDS | 34543923 | 34544023 | 34543923 | ID=cds.MS.gene90953.t1;Parent=MS.gene90953.t1 |
| chr4.2 | exon | 34543586 | 34543656 | 34543586 | ID=MS.gene90953.t1.exon4;Parent=MS.gene90953.t1 |
| chr4.2 | CDS | 34543586 | 34543656 | 34543586 | ID=cds.MS.gene90953.t1;Parent=MS.gene90953.t1 |
| chr4.2 | exon | 34542346 | 34542408 | 34542346 | ID=MS.gene90953.t1.exon5;Parent=MS.gene90953.t1 |
| chr4.2 | CDS | 34542346 | 34542408 | 34542346 | ID=cds.MS.gene90953.t1;Parent=MS.gene90953.t1 |
| chr4.2 | exon | 34542162 | 34542206 | 34542162 | ID=MS.gene90953.t1.exon6;Parent=MS.gene90953.t1 |
| chr4.2 | CDS | 34542162 | 34542206 | 34542162 | ID=cds.MS.gene90953.t1;Parent=MS.gene90953.t1 |
| chr4.2 | exon | 34541160 | 34541225 | 34541160 | ID=MS.gene90953.t1.exon7;Parent=MS.gene90953.t1 |
| chr4.2 | CDS | 34541160 | 34541225 | 34541160 | ID=cds.MS.gene90953.t1;Parent=MS.gene90953.t1 |
| chr4.2 | exon | 34539763 | 34539810 | 34539763 | ID=MS.gene90953.t1.exon8;Parent=MS.gene90953.t1 |
| chr4.2 | CDS | 34539763 | 34539810 | 34539763 | ID=cds.MS.gene90953.t1;Parent=MS.gene90953.t1 |
| chr4.2 | exon | 34539576 | 34539671 | 34539576 | ID=MS.gene90953.t1.exon9;Parent=MS.gene90953.t1 |
| chr4.2 | CDS | 34539576 | 34539671 | 34539576 | ID=cds.MS.gene90953.t1;Parent=MS.gene90953.t1 |
| chr4.2 | exon | 34539449 | 34539490 | 34539449 | ID=MS.gene90953.t1.exon10;Parent=MS.gene90953.t1 |
| chr4.2 | CDS | 34539449 | 34539490 | 34539449 | ID=cds.MS.gene90953.t1;Parent=MS.gene90953.t1 |
| chr4.2 | exon | 34538590 | 34538808 | 34538590 | ID=MS.gene90953.t1.exon11;Parent=MS.gene90953.t1 |
| chr4.2 | CDS | 34538590 | 34538808 | 34538590 | ID=cds.MS.gene90953.t1;Parent=MS.gene90953.t1 |
| chr4.2 | exon | 34538335 | 34538466 | 34538335 | ID=MS.gene90953.t1.exon12;Parent=MS.gene90953.t1 |
| chr4.2 | CDS | 34538335 | 34538466 | 34538335 | ID=cds.MS.gene90953.t1;Parent=MS.gene90953.t1 |
| chr4.2 | exon | 34538043 | 34538261 | 34538043 | ID=MS.gene90953.t1.exon13;Parent=MS.gene90953.t1 |
| chr4.2 | CDS | 34538043 | 34538261 | 34538043 | ID=cds.MS.gene90953.t1;Parent=MS.gene90953.t1 |
| chr4.2 | exon | 34537678 | 34537764 | 34537678 | ID=MS.gene90953.t1.exon14;Parent=MS.gene90953.t1 |
| chr4.2 | CDS | 34537678 | 34537764 | 34537678 | ID=cds.MS.gene90953.t1;Parent=MS.gene90953.t1 |
| chr4.2 | exon | 34537319 | 34537585 | 34537319 | ID=MS.gene90953.t1.exon15;Parent=MS.gene90953.t1 |
| chr4.2 | CDS | 34537319 | 34537585 | 34537319 | ID=cds.MS.gene90953.t1;Parent=MS.gene90953.t1 |
| chr4.2 | exon | 34536808 | 34536929 | 34536808 | ID=MS.gene90953.t1.exon16;Parent=MS.gene90953.t1 |
| chr4.2 | CDS | 34536808 | 34536929 | 34536808 | ID=cds.MS.gene90953.t1;Parent=MS.gene90953.t1 |
| chr4.2 | exon | 34536610 | 34536688 | 34536610 | ID=MS.gene90953.t1.exon17;Parent=MS.gene90953.t1 |
| chr4.2 | CDS | 34536610 | 34536688 | 34536610 | ID=cds.MS.gene90953.t1;Parent=MS.gene90953.t1 |
| chr4.2 | exon | 34535334 | 34535752 | 34535334 | ID=MS.gene90953.t1.exon18;Parent=MS.gene90953.t1 |
| chr4.2 | CDS | 34535334 | 34535752 | 34535334 | ID=cds.MS.gene90953.t1;Parent=MS.gene90953.t1 |
| chr4.2 | exon | 34534442 | 34534556 | 34534442 | ID=MS.gene90953.t1.exon19;Parent=MS.gene90953.t1 |
| chr4.2 | CDS | 34534442 | 34534556 | 34534442 | ID=cds.MS.gene90953.t1;Parent=MS.gene90953.t1 |
| Gene Sequence |
| Protein sequence |